https://launchpad.net/ubuntu/+source/cctbx/2023.12+ds2+~3.17.0+ds1-4build3/+build/28134722 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-024 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 22 Apr 16:28:05 ntpdate[1832]: adjust time server 10.211.37.1 offset 0.004088 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28134722 --image-type chroot /home/buildd/filecache-default/0aaa0d191106d33e51979a9c6a062e50b7f5b3b2 Creating target for build PACKAGEBUILD-28134722 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28134722 Starting target for build PACKAGEBUILD-28134722 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28134722 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28134722 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28134722 Updating target for build PACKAGEBUILD-28134722 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 Packages [1377 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 Packages [15.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5981 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [20.0 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [7084 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [197 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [85.3 kB] Fetched 24.0 MB in 9s (2640 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-14-base gcc-aarch64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 176 upgraded, 23 newly installed, 14 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 77.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1build1 [201 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3build3 [72.5 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl2 arm64 1.3.0-3build3 [41.6 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1build1 [83.6 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libgssapi-krb5-2 arm64 1.20.1-6ubuntu2 [141 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5-3 arm64 1.20.1-6ubuntu2 [349 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libk5crypto3 arm64 1.20.1-6ubuntu2 [85.6 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5support0 arm64 1.20.1-6ubuntu2 [33.9 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libacl1 arm64 2.3.2-1build1 [17.0 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libapparmor1 arm64 4.0.0-beta3-0ubuntu3 [50.0 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcap-ng0 arm64 0.8.4-2build2 [14.8 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit1 arm64 1:3.1.2-2.1build1 [47.6 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libblkid1 arm64 2.39.3-9ubuntu6 [123 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcap2 arm64 1:2.66-5ubuntu2 [30.2 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4build1 [118 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt1 arm64 1:4.4.36-4build1 [85.9 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error-l10n all 1.47-3build2 [8064 B] Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error0 arm64 1.47-3build2 [70.0 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgcrypt20 arm64 1.10.3-2build1 [472 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma5 arm64 5.6.1+really5.4.5-1 [125 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libzstd1 arm64 1.5.5+dfsg2-2build1 [271 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libkmod2 arm64 31+20240202-2ubuntu7 [51.8 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 liblz4-1 arm64 1.9.4-1build1 [64.1 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-8-0 arm64 10.42-4ubuntu2 [212 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libselinux1 arm64 3.5-2ubuntu2 [79.9 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libmount1 arm64 2.39.3-9ubuntu6 [133 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-7 [732 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm6t64 arm64 1.23-5.1build1 [34.4 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm-compat4t64 arm64 1.23-5.1build1 [6578 B] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libperl5.38t64 arm64 5.38.2-3.2build2 [4774 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 perl arm64 5.38.2-3.2build2 [231 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 perl-base arm64 5.38.2-3.2build2 [1777 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 liblocale-gettext-perl arm64 1.07-6ubuntu5 [15.3 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-iconv-perl arm64 1.7-8build3 [13.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-charwidth-perl arm64 0.04-11build3 [9406 B] Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 libnss-nisplus arm64 1.3-5build1 [22.5 kB] Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 libnss-nis arm64 3.1-0ubuntu7 [26.6 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu8 [19.7 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu7 [64.8 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu8 [1596 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu8 [2774 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu8 [591 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 openssl arm64 3.0.13-0ubuntu3 [984 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libsystemd-shared arm64 255.4-1ubuntu8 [2016 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libcryptsetup12 arm64 2:2.7.0-1ubuntu4 [262 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3t64 arm64 3.0.13-0ubuntu3 [1793 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 systemd-dev all 255.4-1ubuntu8 [104 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 systemd-sysv arm64 255.4-1ubuntu8 [11.9 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 systemd arm64 255.4-1ubuntu8 [3403 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libsystemd0 arm64 255.4-1ubuntu8 [424 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules-bin arm64 1.5.3-5ubuntu5 [50.4 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules arm64 1.5.3-5ubuntu5 [278 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libnettle8t64 arm64 3.9.1-2.2build1 [192 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libhogweed6t64 arm64 3.9.1-2.2build1 [199 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libp11-kit0 arm64 0.25.3-4ubuntu2 [276 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libunistring5 arm64 1.1-2build1 [530 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libgnutls30t64 arm64 3.8.3-1.1ubuntu3 [942 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libapt-pkg6.0t64 arm64 2.7.14build2 [935 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 bzip2 arm64 1.0.8-5.1 [34.0 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-1.0 arm64 1.0.8-5.1 [35.7 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-14-base arm64 14-20240412-0ubuntu1 [47.6 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-s1 arm64 14-20240412-0ubuntu1 [61.7 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++6 arm64 14-20240412-0ubuntu1 [748 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libudev1 arm64 255.4-1ubuntu8 [173 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxxhash0 arm64 0.8.2-2build1 [21.7 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu2 [61.7 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2ubuntu6 [243 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libffi8 arm64 3.4.6-1build1 [22.7 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libidn2-0 arm64 2.3.7-2build1 [67.2 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libtasn1-6 arm64 4.19.0-3build1 [43.1 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdebconfclient0 arm64 0.271ubuntu3 [11.3 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 base-passwd arm64 3.6.3build1 [51.1 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libassuan0 arm64 2.5.6-1build1 [36.8 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libsqlite3-0 arm64 3.45.1-1ubuntu2 [703 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 gpg arm64 2.4.4-2ubuntu17 [548 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline8t64 arm64 8.2-4build1 [153 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 readline-common all 8.2-4build1 [56.5 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libncursesw6 arm64 6.4+20240113-1ubuntu2 [145 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libtinfo6 arm64 6.4+20240113-1ubuntu2 [104 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 gpg-agent arm64 2.4.4-2ubuntu17 [221 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 gpgconf arm64 2.4.4-2ubuntu17 [103 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 pinentry-curses arm64 1.2.1-3ubuntu5 [34.3 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libnpth0t64 arm64 1.6-3.1build1 [8144 B] Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 gpgv arm64 2.4.4-2ubuntu17 [150 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libseccomp2 arm64 2.5.5-1ubuntu3 [51.1 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 apt-utils arm64 2.7.14build2 [205 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 apt arm64 2.7.14build2 [1336 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 debconf-i18n all 1.5.86ubuntu1 [205 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 debconf all 1.5.86ubuntu1 [124 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libpam0g arm64 1.5.3-5ubuntu5 [67.8 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libargon2-1 arm64 0~20190702+dfsg-4build1 [20.5 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libdevmapper1.02.1 arm64 2:1.02.185-3ubuntu3 [128 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libjson-c5 arm64 0.17-1build1 [36.4 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libuuid1 arm64 2.39.3-9ubuntu6 [35.4 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libfdisk1 arm64 2.39.3-9ubuntu6 [142 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 mount arm64 2.39.3-9ubuntu6 [116 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libcom-err2 arm64 1.47.0-2.4~exp1ubuntu4 [22.4 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libkeyutils1 arm64 1.6.3-3build1 [9654 B] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-31.31 [1572 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 base-files arm64 13ubuntu10 [73.8 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.17build1 [90.2 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu4 [780 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 bsdutils arm64 1:2.39.3-9ubuntu6 [97.7 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 coreutils arm64 9.4-3ubuntu6 [1363 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 tar arm64 1.35+dfsg-3build1 [248 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg arm64 1.22.6ubuntu6 [1265 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 dash arm64 0.5.12-6ubuntu5 [90.4 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 diffutils arm64 1:3.10-1build1 [175 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 findutils arm64 4.9.0-5build1 [300 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 grep arm64 3.11-4build1 [159 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 gzip arm64 1.12-1ubuntu3 [97.2 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 hostname arm64 3.23+nmu2ubuntu2 [11.0 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 login arm64 1:4.13+dfsg1-4ubuntu3 [200 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-bin arm64 6.4+20240113-1ubuntu2 [186 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 sed arm64 4.9-2build1 [191 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 util-linux arm64 2.39.3-9ubuntu6 [1114 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 sysvinit-utils arm64 3.08-6ubuntu3 [33.8 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 logsave arm64 1.47.0-2.4~exp1ubuntu4 [22.2 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libext2fs2t64 arm64 1.47.0-2.4~exp1ubuntu4 [225 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 e2fsprogs arm64 1.47.0-2.4~exp1ubuntu4 [594 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 optipng arm64 0.7.8+ds-1build2 [109 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpng16-16t64 arm64 1.6.43-5build1 [185 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 init arm64 1.66ubuntu1 [6186 B] Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libsmartcols1 arm64 2.39.3-9ubuntu6 [64.4 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-runtime arm64 2.39.3-9ubuntu6 [32.5 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libattr1 arm64 1:2.5.2-1build1 [11.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libmd0 arm64 1.1.0-2build1 [24.6 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libsepol2 arm64 3.5-2build1 [291 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage2 arm64 3.5-1build5 [90.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 passwd arm64 1:4.13+dfsg1-4ubuntu3 [839 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-4ubuntu3 [58.5 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libss2 arm64 1.47.0-2.4~exp1ubuntu4 [16.5 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 mawk arm64 1.3.4.20240123-1build1 [124 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-4ubuntu3 [708 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 sensible-utils all 0.0.22 [22.5 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates all 20240203 [159 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 tzdata all 2024a-2ubuntu1 [273 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 bash-completion all 1:2.11-8 [180 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 bsdextrautils arm64 2.39.3-9ubuntu6 [71.5 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libgpm2 arm64 1.20.7-11 [14.7 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libip4tc2 arm64 1.8.10-3ubuntu2 [23.4 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libjansson4 arm64 2.14-2build2 [34.4 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 psmisc arm64 23.7-1build1 [178 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 xz-utils arm64 5.6.1+really5.4.5-1 [268 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 advancecomp arm64 2.5-1build1 [177 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libgprofng0 arm64 2.42-4ubuntu2 [777 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libctf0 arm64 2.42-4ubuntu2 [95.7 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libctf-nobfd0 arm64 2.42-4ubuntu2 [99.8 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-aarch64-linux-gnu arm64 2.42-4ubuntu2 [3291 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libbinutils arm64 2.42-4ubuntu2 [767 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 binutils arm64 2.42-4ubuntu2 [18.1 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-common arm64 2.42-4ubuntu2 [239 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 libsframe1 arm64 2.42-4ubuntu2 [14.4 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240412-0ubuntu1 [1155 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-23ubuntu4 [14.5 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240412-0ubuntu1 [144 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240412-0ubuntu1 [27.9 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240412-0ubuntu1 [11.4 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240412-0ubuntu1 [2921 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240412-0ubuntu1 [1286 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240412-0ubuntu1 [1604 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-23ubuntu4 [472 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240412-0ubuntu1 [2692 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240412-0ubuntu1 [44.7 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-23ubuntu4 [1032 B] Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-base arm64 13.2.0-23ubuntu4 [49.0 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3build1 [669 kB] Get:179 http://ftpmaster.internal/ubuntu noble/main arm64 libmpfr6 arm64 4.2.1-1build1 [329 kB] Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [20.1 MB] Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [11.7 MB] Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.3 MB] Get:184 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] Get:186 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] Get:188 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] Get:189 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:191 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:192 http://ftpmaster.internal/ubuntu noble/main arm64 patch arm64 2.7.6-7build3 [101 kB] Get:193 http://ftpmaster.internal/ubuntu noble/main arm64 make arm64 4.3-4.1build2 [178 kB] Get:194 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 47 [12.4 kB] Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfakeroot arm64 1.34-1 [32.5 kB] Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 fakeroot arm64 1.34-1 [66.9 kB] Get:197 http://ftpmaster.internal/ubuntu noble/main arm64 liblockfile-bin arm64 1.17-1build3 [11.0 kB] Get:198 http://ftpmaster.internal/ubuntu noble/main arm64 liblockfile1 arm64 1.17-1build3 [6874 B] Get:199 http://ftpmaster.internal/ubuntu noble/main arm64 lockfile-progs arm64 0.1.19build2 [8440 B] Preconfiguring packages ... Fetched 116 MB in 8s (14.8 MB/s) (Reading database ... 13662 files and directories currently installed.) Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../libtirpc-dev_1.3.4+ds-1.1build1_arm64.deb ... Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../libnsl-dev_1.3.0-3build3_arm64.deb ... Unpacking libnsl-dev:arm64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../libnsl2_1.3.0-3build3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3build3) over (1.3.0-2build2) ... dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). (Reading database ... 13662 files and directories currently installed.) Removing libtirpc3:arm64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:arm64. 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Unpacking perl-modules-5.38 (5.38.2-3.2build2) ... dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libdb5.3. libpam-modules:arm64 depends on libdb5.3. apt-utils depends on libdb5.3. (Reading database ... 15080 files and directories currently installed.) Removing libdb5.3:arm64 (5.3.28+dfsg2-2) ... Selecting previously unselected package libdb5.3t64:arm64. (Reading database ... 15074 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_arm64.deb ... Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-7) ... dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libgdbm6 (>= 1.21). libgdbm-compat4:arm64 depends on libgdbm6 (>= 1.16). (Reading database ... 15080 files and directories currently installed.) Removing libgdbm6:arm64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:arm64. 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Unpacking perl-base (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.38.2-3.2build2) ... (Reading database ... 15614 files and directories currently installed.) Preparing to unpack .../0-liblocale-gettext-perl_1.07-6ubuntu5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6ubuntu5) over (1.07-6) ... Preparing to unpack .../1-libtext-iconv-perl_1.7-8build3_arm64.deb ... Unpacking libtext-iconv-perl:arm64 (1.7-8build3) over (1.7-8) ... Preparing to unpack .../2-libtext-charwidth-perl_0.04-11build3_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11build3) over (0.04-11) ... Preparing to unpack .../3-libnss-nisplus_1.3-5build1_arm64.deb ... Unpacking libnss-nisplus:arm64 (1.3-5build1) over (1.3-0ubuntu6) ... Preparing to unpack .../4-libnss-nis_3.1-0ubuntu7_arm64.deb ... Unpacking libnss-nis:arm64 (3.1-0ubuntu7) over (3.1-0ubuntu6) ... Preparing to unpack .../5-libc-dev-bin_2.39-0ubuntu8_arm64.deb ... 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Unpacking libsystemd-shared:arm64 (255.4-1ubuntu8) over (253.5-1ubuntu6) ... Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu4_arm64.deb ... Unpacking libcryptsetup12:arm64 (2:2.7.0-1ubuntu4) over (2:2.6.1-4ubuntu3) ... dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: systemd depends on libssl3 (>= 3.0.0). (Reading database ... 15618 files and directories currently installed.) Removing libssl3:arm64 (3.0.10-1ubuntu2) ... Selecting previously unselected package libssl3t64:arm64. (Reading database ... 15607 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.0.13-0ubuntu3_arm64.deb ... Unpacking libssl3t64:arm64 (3.0.13-0ubuntu3) ... Setting up libssl3t64:arm64 (3.0.13-0ubuntu3) ... (Reading database ... 15620 files and directories currently installed.) Preparing to unpack .../systemd-dev_255.4-1ubuntu8_all.deb ... Unpacking systemd-dev (255.4-1ubuntu8) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-sysv_255.4-1ubuntu8_arm64.deb ... Unpacking systemd-sysv (255.4-1ubuntu8) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd_255.4-1ubuntu8_arm64.deb ... Unpacking systemd (255.4-1ubuntu8) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu8_arm64.deb ... Unpacking libsystemd0:arm64 (255.4-1ubuntu8) over (253.5-1ubuntu6) ... Setting up libsystemd0:arm64 (255.4-1ubuntu8) ... (Reading database ... 15782 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu5_arm64.deb ... Unpacking libpam-modules-bin (1.5.3-5ubuntu5) over (1.5.2-6ubuntu1) ... Setting up libpam-modules-bin (1.5.3-5ubuntu5) ... (Reading database ... 15781 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-5ubuntu5_arm64.deb ... Unpacking libpam-modules:arm64 (1.5.3-5ubuntu5) over (1.5.2-6ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/aarch64-linux-gnu/security': Directory not empty Setting up libpam-modules:arm64 (1.5.3-5ubuntu5) ... Installing new version of config file /etc/security/namespace.init ... dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: libgnutls30:arm64 depends on libhogweed6 (>= 3.6). 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(both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_arm64.deb ... Unpacking libbz2-1.0:arm64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:arm64 (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:arm64. (Reading database ... 15788 files and directories currently installed.) 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Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1build1) ... Setting up libkrb5-3:arm64 (1.20.1-6ubuntu2) ... Setting up liblockfile1:arm64 (1.17-1build3) ... Setting up libperl5.38t64:arm64 (5.38.2-3.2build2) ... Setting up libtsan2:arm64 (14-20240412-0ubuntu1) ... Setting up libbinutils:arm64 (2.42-4ubuntu2) ... Setting up libisl23:arm64 (0.26-3build1) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build2) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:arm64 (14-20240412-0ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up liblsan0:arm64 (14-20240412-0ubuntu1) ... Setting up libitm1:arm64 (14-20240412-0ubuntu1) ... Setting up libctf0:arm64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... Setting up debconf-i18n (1.5.86ubuntu1) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libgprofng0:arm64 (2.42-4ubuntu2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19build2) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:arm64 (8.2-4build1) ... Setting up libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:arm64 (2.39-0ubuntu8) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu4) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1build1) ... Setting up binutils-aarch64-linux-gnu (2.42-4ubuntu2) ... Setting up binutils (2.42-4ubuntu2) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu4) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:arm64 (1.3.0-3build3) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-23ubuntu4) ... Setting up libnss-nisplus:arm64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up libnss-nis:arm64 (3.1-0ubuntu7) ... Setting up libnsl-dev:arm64 (1.3.0-3build3) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15845 files and directories currently installed.) Purging configuration files for libssl3:arm64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28134722 arm64 noble-proposed -c chroot:build-PACKAGEBUILD-28134722 --arch=arm64 --dist=noble-proposed --nolog 'cctbx_2023.12+ds2+~3.17.0+ds1-4build3.dsc' Initiating build PACKAGEBUILD-28134722 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-024.buildd +===============================================================================+ | cctbx 2023.12+ds2+~3.17.0+ds1-4build3 (arm64) Mon, 22 Apr 2024 16:29:43 +0000 | +===============================================================================+ Package: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build3 Source Version: 2023.12+ds2+~3.17.0+ds1-4build3 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28134722/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/cctbx-NwfKSV/resolver-mq9rDh' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- cctbx_2023.12+ds2+~3.17.0+ds1-4build3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/cctbx-NwfKSV/cctbx-2023.12+ds2+~3.17.0+ds1' with '<>' I: NOTICE: Log filtering will replace 'build/cctbx-NwfKSV' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-h5py (>= 3), python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-nxmx, python3-orderedset, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, rsync, scons, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-h5py (>= 3), python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-nxmx, python3-orderedset, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, rsync, scons, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [683 B] Get:5 copy:/<>/apt_archive ./ Packages [757 B] Fetched 2403 B in 0s (67.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev blt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 gettext gettext-base groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian jq libaec-dev libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcbf-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0 libclipper-dev libclipper2 libcolord2 libcups2t64 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1t64 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libepoxy0 libevdev2 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0t64 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu74 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc-dev liblerc4 libllvm17t64 liblz4-dev liblzf1 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmmdb2-0 libmmdb2-dev libmtdev1t64 libmunge2 libnetcdf19t64 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnotify4 libonig5 libopengl-dev libopengl0 libopenjp2-7 libopenmpi3t64 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpipeline1 libpixman-1-0 libpkgconf3 libpmix2t64 libpopt0 libpsl5t64 libpthread-stubs0-dev libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libraqm0 librdmacm1t64 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv-dev libsharpyuv0 libsm6 libssh-4 libssl-dev libssm-dev libssm2 libsub-override-perl libsz2 libtcl8.6 libthai-data libthai0 libtiff-dev libtiff6 libtiffxx6 libtk8.6 libtool libuchardet0 libucx0 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzstd-dev m4 man-db media-types netbase ocl-icd-libopencl1 pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev pymol-data python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-fonttools python3-freetype python3-fs python3-h5py python3-h5py-serial python3-idna python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-mrcfile python3-msgpack python3-numpy python3-nxmx python3-opengl python3-orderedset python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pip python3-pkg-resources python3-pluggy python3-procrunner python3-psutil python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-pytest python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3-wheel python3-wxgtk4.0 python3.12 python3.12-dev python3.12-minimal rsync scons sfftw-dev sfftw2 sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data w3c-sgml-lib x11-common x11proto-dev xfonts-encodings xfonts-utils xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo dh-make flit python3-build python3-installer mpi-defaults-bin fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.83-doc gccxml libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-program-options1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libclipper-doc colord cups-common libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libfftw3-doc glew-utils low-memory-monitor gvfs libhdf5-doc libjs-jquery-ui-docs liblcms2-utils liblzma-doc notification-daemon pciutils qgnomeplatform-qt5 qt5-image-formats-plugins lm-sensors libssl-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk libwacom-bin libx11-doc libxcb-doc m4-doc apparmor less www-browser opencl-icd libmail-box-perl pybind11-doc python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-cycler-doc python-h5py-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran libgle3 python-pil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg wx3.2-doc python3.12-venv python3.12-doc binfmt-support openssh-client openssh-server python3-braceexpand scons-doc sgml-base-doc Recommended packages: librsvg2-common curl | wget | lynx at-spi2-core libarchive-cpio-perl libgdk-pixbuf2.0-bin libgl1-amber-dri libglib2.0-data xdg-user-dirs libgtk-3-bin javascript-common libldap-common publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-bs4 python3-cssselect python3-html5lib libglut-dev python3-olefile python3-pygments fonts-dejavu-extra isympy-common The following NEW packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev blt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 gettext gettext-base groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian jq libaec-dev libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcbf-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0 libclipper-dev libclipper2 libcolord2 libcups2t64 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1t64 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libepoxy0 libevdev2 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0t64 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu74 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc-dev liblerc4 libllvm17t64 liblz4-dev liblzf1 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmmdb2-0 libmmdb2-dev libmtdev1t64 libmunge2 libnetcdf19t64 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnotify4 libonig5 libopengl-dev libopengl0 libopenjp2-7 libopenmpi3t64 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpipeline1 libpixman-1-0 libpkgconf3 libpmix2t64 libpopt0 libpsl5t64 libpthread-stubs0-dev libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libraqm0 librdmacm1t64 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv-dev libsharpyuv0 libsm6 libssh-4 libssl-dev libssm-dev libssm2 libsub-override-perl libsz2 libtcl8.6 libthai-data libthai0 libtiff-dev libtiff6 libtiffxx6 libtk8.6 libtool libuchardet0 libucx0 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzstd-dev m4 man-db media-types netbase ocl-icd-libopencl1 pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev pymol-data python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-fonttools python3-freetype python3-fs python3-h5py python3-h5py-serial python3-idna python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-mrcfile python3-msgpack python3-numpy python3-nxmx python3-opengl python3-orderedset python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pip python3-pkg-resources python3-pluggy python3-procrunner python3-psutil python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-pytest python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3-wheel python3-wxgtk4.0 python3.12 python3.12-dev python3.12-minimal rsync sbuild-build-depends-main-dummy scons sfftw-dev sfftw2 sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data w3c-sgml-lib x11-common x11proto-dev xfonts-encodings xfonts-utils xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 428 newly installed, 0 to remove and 0 not upgraded. Need to get 241 MB of archives. After this operation, 1183 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-minimal arm64 3.12.3-1 [829 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1 arm64 2.6.1-2build1 [76.1 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-minimal arm64 3.12.3-1 [2251 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3-minimal arm64 3.12.3-0ubuntu1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-stdlib arm64 3.12.3-1 [2036 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12 arm64 3.12.3-1 [651 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-stdlib arm64 3.12.3-0ubuntu1 [9896 B] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 python3 arm64 3.12.3-0ubuntu1 [24.1 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libpopt0 arm64 1.19+dfsg-1build1 [28.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rsync arm64 3.2.7-1ubuntu1 [427 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-lato all 2.015-1 [2781 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libdbus-1-3 arm64 1.14.10-4ubuntu4 [210 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 dbus-bin arm64 1.14.10-4ubuntu4 [38.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 dbus-session-bus-common all 1.14.10-4ubuntu4 [80.4 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 dbus-daemon arm64 1.14.10-4ubuntu4 [115 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 dbus-system-bus-common all 1.14.10-4ubuntu4 [81.6 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 dbus arm64 1.14.10-4ubuntu4 [23.9 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-systemd arm64 255.4-1ubuntu8 [232 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 dbus-user-session arm64 1.14.10-4ubuntu4 [9960 B] Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libbsd0 arm64 0.12.1-1build1 [40.9 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libelf1t64 arm64 0.190-1.1build4 [58.0 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libfribidi0 arm64 1.0.13-3build1 [26.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libglib2.0-0t64 arm64 2.80.0-6ubuntu1 [1289 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libicu74 arm64 74.2-1ubuntu3 [10.8 MB] Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libxml2 arm64 2.9.14+dfsg-1.3ubuntu3 [735 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 shared-mime-info arm64 2.4-4 [472 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 xkb-data all 2.41-2ubuntu1 [395 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic-mgc arm64 1:5.45-3build1 [307 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic1t64 arm64 1:5.45-3build1 [85.7 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 file arm64 1:5.45-3build1 [22.0 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gettext-base arm64 0.21-14ubuntu2 [37.6 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libuchardet0 arm64 0.0.8-1build1 [75.4 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 groff-base arm64 1.23.0-3build2 [993 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-common all 2.4.120-2build1 [8096 B] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm2 arm64 2.4.120-2build1 [42.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libedit2 arm64 3.1-20230828-1build1 [97.5 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libnghttp2-14 arm64 1.59.0-1build4 [74.1 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libpipeline1 arm64 1.5.7-2 [23.7 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libpsl5t64 arm64 0.21.2-1.1build1 [57.4 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxau6 arm64 1:1.0.9-1build6 [7264 B] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu6 [10.4 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb1 arm64 1.15-1ubuntu2 [49.4 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-data all 2:1.8.7-1build1 [115 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-6 arm64 2:1.8.7-1build1 [649 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxext6 arm64 2:1.3.4-1build2 [30.4 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 man-db arm64 2.12.0-4build2 [1232 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3ubuntu3 [7852 B] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1build1 [43.4 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4build3 [14.5 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4build3 [191 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu2 [191 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3ubuntu3 [145 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.41-4ubuntu1 [51.9 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46.0-1 [723 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.52.0-1build1 [8674 B] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4build1 [240 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 autopoint all 0.21-14ubuntu2 [422 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libbrotli1 arm64 1.1.0-2build2 [339 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libfreetype6 arm64 2.13.2+dfsg-1build3 [393 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build3 [93.1 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libdconf1 arm64 0.40.0-4build2 [39.8 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-service arm64 0.40.0-4build2 [26.9 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-gsettings-backend arm64 0.40.0-4build2 [22.0 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtool all 2.4.7-7build1 [166 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 dh-autoreconf all 20 [16.1 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1t64 arm64 0.190-1.1build4 [258 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5build2 [45.3 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1build6 [113 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 gettext arm64 0.21-14ubuntu2 [845 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.14.1ubuntu5 [869 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 dh-python all 6.20240401 [110 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-9ubuntu2 [90.3 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-9ubuntu2 [7932 B] Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-200 arm64 3.7.0-0.3build1 [57.5 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-200 arm64 3.7.0-0.3build1 [183 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs1 arm64 50.0-2build2 [67.3 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 ibverbs-providers arm64 50.0-2build2 [367 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2build2 [70.6 kB] Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build2 [541 kB] Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1build1 [159 kB] Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1build1 [15.7 kB] Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2t64 arm64 5.0.1-4.1build1 [655 kB] Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-5ubuntu1 [1074 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu2 [2463 kB] Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 fftw2 arm64 2.1.5-6build2 [177 kB] Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 fftw-dev arm64 2.1.5-6build2 [220 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.4.0~RC3-1build4 [171 kB] Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3.1ubuntu4 [15.8 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libonig5 arm64 6.9.9-1build1 [172 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libjq1 arm64 1.7.1-3build1 [133 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 jq arm64 1.7.1-3build1 [64.6 kB] Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1build1 [22.1 kB] Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libann-cctbx0 arm64 1.1.2+doc-9build1 [32.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libann-cctbx-dev arm64 1.1.2+doc-9build1 [45.1 kB] Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr3c-3.4-0 arm64 3.4+dfsg-4build2 [45.7 kB] Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr3c-dev arm64 3.4+dfsg-4build2 [132 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0t64 arm64 2.52.0-1build1 [55.1 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1build1 [31.9 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libatspi2.0-0t64 arm64 2.52.0-1build1 [80.9 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libatk-bridge2.0-0t64 arm64 2.52.0-1build1 [66.3 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu6 [29.6 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu6 [23.3 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu6 [27.2 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2.1ubuntu3 [10.7 MB] Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-atomic1.83.0 arm64 1.83.0-2.1ubuntu3 [239 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-atomic1.83-dev arm64 1.83.0-2.1ubuntu3 [235 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-2.1ubuntu3 [244 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-chrono1.83-dev arm64 1.83.0-2.1ubuntu3 [245 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-date-time1.83.0 arm64 1.83.0-2.1ubuntu3 [236 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-serialization1.83.0 arm64 1.83.0-2.1ubuntu3 [335 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-serialization1.83-dev arm64 1.83.0-2.1ubuntu3 [392 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-date-time1.83-dev arm64 1.83.0-2.1ubuntu3 [239 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-python1.83.0 arm64 1.83.0-2.1ubuntu3 [307 kB] Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-numpy1.83.0 arm64 1.83.0-2.1ubuntu3 [242 kB] Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-numpy1.83-dev arm64 1.83.0-2.1ubuntu3 [248 kB] Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-numpy-dev arm64 1.83.0.1ubuntu2 [4098 B] Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12t64 arm64 3.12.3-1 [2278 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1-dev arm64 2.6.1-2build1 [128 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-dev arm64 3.12.3-1 [5532 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-dev arm64 3.12.3-0ubuntu1 [10.2 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-dev arm64 3.12.3-1 [498 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-6 [149 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dev arm64 3.12.3-0ubuntu1 [26.7 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-python1.83-dev arm64 1.83.0-2.1ubuntu3 [336 kB] Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-python-dev arm64 1.83.0.1ubuntu2 [4346 B] Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-system1.83.0 arm64 1.83.0-2.1ubuntu3 [236 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-system1.83-dev arm64 1.83.0-2.1ubuntu3 [231 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-thread1.83.0 arm64 1.83.0-2.1ubuntu3 [275 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-thread1.83-dev arm64 1.83.0-2.1ubuntu3 [284 kB] Get:179 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-thread-dev arm64 1.83.0.1ubuntu2 [4088 B] Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1ubuntu2 [16.6 kB] Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1ubuntu2 [5876 B] Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB] Get:184 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo-gobject2 arm64 1.18.0-3build1 [127 kB] Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-5ubuntu3 [21.4 kB] Get:186 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-5ubuntu3 [54.7 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main arm64 libldap2 arm64 2.6.7+dfsg-1~exp1ubuntu8 [193 kB] Get:188 http://ftpmaster.internal/ubuntu noble/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build7 [57.8 kB] Get:189 http://ftpmaster.internal/ubuntu noble/main arm64 libssh-4 arm64 0.10.6-2build2 [189 kB] Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu10 [333 kB] Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1build1 [5284 B] Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [1192 kB] Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libcbf1t64 arm64 0.9.7+dfsg1-3.1build2 [347 kB] Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libccp4-data all 8.0.0-2ubuntu1 [65.2 kB] Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libccp4c0t64 arm64 8.0.0-2ubuntu1 [92.4 kB] Get:196 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240412-0ubuntu1 [444 kB] Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libmmdb2-0 arm64 2.0.22-1 [347 kB] Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libccp4f0 arm64 8.0.0-2ubuntu1 [202 kB] Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libccp4-dev arm64 8.0.0-2ubuntu1 [42.4 kB] Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 sfftw2 arm64 2.1.5-6build2 [179 kB] Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 libclipper2 arm64 2.1.20201109-2build1 [1150 kB] Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 libmmdb2-dev arm64 2.0.22-1 [93.5 kB] Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 sfftw-dev arm64 2.1.5-6build2 [223 kB] Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 libclipper-dev arm64 2.1.20201109-2build1 [77.0 kB] Get:205 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] Get:206 http://ftpmaster.internal/ubuntu noble/main arm64 libcolord2 arm64 1.4.7-1build2 [149 kB] Get:207 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2t64 arm64 2.4.7-1.2ubuntu7 [273 kB] Get:208 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl3t64-gnutls arm64 8.5.0-2ubuntu10 [327 kB] Get:209 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu10 [454 kB] Get:210 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] Get:211 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate-dev arm64 1.19-1build1 [51.2 kB] Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1build1 [38.0 kB] Get:213 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2build1 [20.5 kB] Get:214 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2build1 [17.8 kB] Get:215 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2build1 [20.9 kB] Get:216 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-server0 arm64 1.22.0-2.1build1 [34.6 kB] Get:217 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1ubuntu2 [18.4 kB] Get:218 http://ftpmaster.internal/ubuntu noble/main arm64 libgbm1 arm64 24.0.5-1ubuntu1 [43.6 kB] Get:219 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.5-1ubuntu1 [58.4 kB] Get:220 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1build1 [25.9 kB] Get:221 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1build1 [7870 B] Get:222 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1ubuntu2 [7418 B] Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1ubuntu2 [7196 B] Get:224 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1ubuntu2 [5866 B] Get:225 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1ubuntu2 [9682 B] Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1ubuntu2 [10.6 kB] Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] Get:228 http://ftpmaster.internal/ubuntu noble/main arm64 libegl-mesa0 arm64 24.0.5-1ubuntu1 [116 kB] Get:229 http://ftpmaster.internal/ubuntu noble/main arm64 libepoxy0 arm64 1.5.10-1build1 [240 kB] Get:230 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu3 [384 kB] Get:231 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-long3 arm64 3.3.10-1ubuntu3 [640 kB] Get:232 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-single3 arm64 3.3.10-1ubuntu3 [583 kB] Get:233 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-bin arm64 3.3.10-1ubuntu3 [34.2 kB] Get:234 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-dev arm64 3.3.10-1ubuntu3 [1453 kB] Get:235 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1ubuntu2 [25.5 kB] Get:237 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB] Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] Get:239 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1build1 [150 kB] Get:240 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17t64 arm64 1:17.0.6-9ubuntu1 [25.0 MB] Get:241 http://ftpmaster.internal/ubuntu noble/main arm64 libsensors-config all 1:3.6.0-9build1 [5546 B] Get:242 http://ftpmaster.internal/ubuntu noble/main arm64 libsensors5 arm64 1:3.6.0-9build1 [27.0 kB] Get:243 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.5-1ubuntu1 [8226 kB] Get:244 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.5-1ubuntu1 [166 kB] Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] Get:246 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] Get:247 http://ftpmaster.internal/ubuntu noble/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:248 http://ftpmaster.internal/ubuntu noble/main arm64 x11proto-dev all 2023.2-1 [602 kB] Get:249 http://ftpmaster.internal/ubuntu noble/main arm64 libxau-dev arm64 1:1.0.9-1build6 [10.0 kB] Get:250 http://ftpmaster.internal/ubuntu noble/main arm64 libxdmcp-dev arm64 1:1.1.3-0ubuntu6 [26.3 kB] Get:251 http://ftpmaster.internal/ubuntu noble/main arm64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 libpthread-stubs0-dev arm64 0.4-1build3 [4734 B] Get:253 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb1-dev arm64 1.15-1ubuntu2 [91.2 kB] Get:254 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-dev arm64 2:1.8.7-1build1 [742 kB] Get:255 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-dev arm64 1.7.0-1build1 [14.2 kB] Get:256 http://ftpmaster.internal/ubuntu noble/main arm64 libgl-dev arm64 1.7.0-1build1 [102 kB] Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] Get:258 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] Get:259 http://ftpmaster.internal/ubuntu noble/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB] Get:260 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl-dev arm64 1.7.0-1build1 [3440 B] Get:261 http://ftpmaster.internal/ubuntu noble/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1build1 [227 kB] Get:262 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB] Get:263 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] Get:264 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2build1 [158 kB] Get:265 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] Get:266 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.52.1+ds-1build1 [228 kB] Get:267 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.52.1+ds-1build1 [42.0 kB] Get:268 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.52.1+ds-1build1 [27.4 kB] Get:269 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-cursor0 arm64 1.22.0-2.1build1 [10.3 kB] Get:270 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-egl1 arm64 1.22.0-2.1build1 [5622 B] Get:271 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build3 [6336 B] Get:272 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1build1 [21.1 kB] Get:273 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1build1 [6236 B] Get:274 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3build1 [6394 B] Get:275 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon0 arm64 1.6.0-1build1 [122 kB] Get:276 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2build1 [19.6 kB] Get:277 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-common all 3.24.41-4ubuntu1 [1202 kB] Get:278 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-0t64 arm64 3.24.41-4ubuntu1 [2869 kB] Get:279 http://ftpmaster.internal/ubuntu noble/main arm64 libgudev-1.0-0 arm64 1:238-5ubuntu1 [15.1 kB] Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [121 kB] Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-3.1ubuntu4 [86.4 kB] Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu4 [55.8 kB] Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-3.1ubuntu4 [30.9 kB] Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-3.1ubuntu4 [11.0 kB] Get:285 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] Get:286 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] Get:287 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1build1 [19.2 kB] Get:289 http://ftpmaster.internal/ubuntu noble/main arm64 libssl-dev arm64 3.0.13-0ubuntu3 [2334 kB] Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3.1ubuntu4 [3038 kB] Get:291 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] Get:292 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] Get:293 http://ftpmaster.internal/ubuntu noble/main arm64 libevdev2 arm64 1.13.1+dfsg-1build1 [35.8 kB] Get:294 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom-common all 2.10.0-2 [63.4 kB] Get:295 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom9 arm64 2.10.0-2 [23.7 kB] Get:296 http://ftpmaster.internal/ubuntu noble/main arm64 libinput-bin arm64 1.25.0-1ubuntu2 [22.2 kB] Get:297 http://ftpmaster.internal/ubuntu noble/main arm64 libmtdev1t64 arm64 1.1.6-1.1build1 [14.3 kB] Get:298 http://ftpmaster.internal/ubuntu noble/main arm64 libinput10 arm64 1.25.0-1ubuntu2 [129 kB] Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:300 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] Get:302 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc-dev arm64 4.0.0+ds-4ubuntu2 [168 kB] Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 libmd4c0 arm64 0.4.8-1build1 [40.9 kB] Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu4 [471 kB] Get:306 http://ftpmaster.internal/ubuntu noble/main arm64 libnotify4 arm64 0.8.3-1build2 [25.4 kB] Get:307 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu2 [196 kB] Get:308 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu2 [184 kB] Get:309 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2build1 [31.2 kB] Get:310 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-all-dev arm64 3.12.3-0ubuntu1 [910 B] Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5core5t64 arm64 5.15.13+dfsg-1ubuntu1 [1973 kB] Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5dbus5t64 arm64 5.15.13+dfsg-1ubuntu1 [224 kB] Get:314 http://ftpmaster.internal/ubuntu noble/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5network5t64 arm64 5.15.13+dfsg-1ubuntu1 [741 kB] Get:316 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] Get:317 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-icccm4 arm64 0.4.1-1.1build3 [10.5 kB] Get:318 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-util1 arm64 0.4.0-1build3 [10.7 kB] Get:319 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] Get:320 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-keysyms1 arm64 0.4.0-1build4 [7984 B] Get:321 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render-util0 arm64 0.3.9-1build4 [9648 B] Get:322 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shape0 arm64 1.15-1ubuntu2 [6250 B] Get:323 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinerama0 arm64 1.15-1ubuntu2 [5598 B] Get:324 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinput0 arm64 1.15-1ubuntu2 [34.2 kB] Get:325 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xkb1 arm64 1.15-1ubuntu2 [32.6 kB] Get:326 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1build1 [13.6 kB] Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5gui5t64 arm64 5.15.13+dfsg-1ubuntu1 [3617 kB] Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5widgets5t64 arm64 5.15.13+dfsg-1ubuntu1 [2564 kB] Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5xml5t64 arm64 5.15.13+dfsg-1ubuntu1 [125 kB] Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5designer5 arm64 5.15.13-1 [2845 kB] Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5sql5t64 arm64 5.15.13+dfsg-1ubuntu1 [123 kB] Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5help5 arm64 5.15.13-1 [165 kB] Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5opengl5t64 arm64 5.15.13+dfsg-1ubuntu1 [148 kB] Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5printsupport5t64 arm64 5.15.13+dfsg-1ubuntu1 [210 kB] Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5test5t64 arm64 5.15.13+dfsg-1ubuntu1 [144 kB] Get:336 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] Get:337 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv-dev arm64 1.3.2-0.4build3 [15.1 kB] Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 libssm2 arm64 1.4.0-2 [73.0 kB] Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 libssm-dev arm64 1.4.0-2 [14.0 kB] Get:340 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig-dev arm64 2.1-6.1ubuntu2 [27.5 kB] Get:341 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.6.1+really5.4.5-1 [178 kB] Get:342 http://ftpmaster.internal/ubuntu noble/main arm64 libzstd-dev arm64 1.5.5+dfsg2-2build1 [344 kB] Get:343 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4build3 [12.3 kB] Get:344 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4build3 [25.0 kB] Get:345 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdecoder3 arm64 1.3.2-0.4build3 [88.7 kB] Get:346 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp-dev arm64 1.3.2-0.4build3 [334 kB] Get:347 http://ftpmaster.internal/ubuntu noble/main arm64 libtiffxx6 arm64 4.5.1+git230720-4ubuntu2 [5640 B] Get:348 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff-dev arm64 4.5.1+git230720-4ubuntu2 [337 kB] Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxbase3.2-1t64 arm64 3.2.4+dfsg-4build1 [860 kB] Get:350 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1build1 [13.0 kB] Get:351 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxgtk3.2-1t64 arm64 3.2.4+dfsg-4build1 [4352 kB] Get:352 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxgtk-gl3.2-1t64 arm64 3.2.4+dfsg-4build1 [52.6 kB] Get:353 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB] Get:354 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2build1 [20.5 kB] Get:355 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2build1 [16.8 kB] Get:356 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2build1 [7264 B] Get:357 http://ftpmaster.internal/ubuntu noble/universe arm64 pybind11-dev all 2.11.1-2 [159 kB] Get:358 http://ftpmaster.internal/ubuntu noble/universe arm64 pymol-data all 2.5.0+dfsg-1build6 [1353 kB] Get:359 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu5 [2936 kB] Get:360 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B] Get:361 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all-dev arm64 3.12.3-0ubuntu1 [910 B] Get:362 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] Get:363 http://ftpmaster.internal/ubuntu noble/main arm64 python3-attr all 23.2.0-2 [48.6 kB] Get:364 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.26.4+ds-6ubuntu1 [3565 kB] Get:365 http://ftpmaster.internal/ubuntu noble/main arm64 python3-chardet all 5.2.0+dfsg-1 [117 kB] Get:366 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.12.3-0ubuntu1 [102 kB] Get:367 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pil.imagetk arm64 10.2.0-1build1 [9274 B] Get:368 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] Get:369 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1build1 [440 kB] Get:370 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2build2 [121 kB] Get:371 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] Get:372 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] Get:373 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-4 [1105 kB] Get:374 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] Get:375 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] Get:376 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.83+dfsg1-1 [1646 kB] Get:377 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] Get:378 http://ftpmaster.internal/ubuntu noble/main arm64 python3-certifi all 2023.11.17-1 [165 kB] Get:379 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-2build1 [163 kB] Get:380 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-2 [8202 B] Get:381 http://ftpmaster.internal/ubuntu noble/main arm64 python3-six all 1.16.0-4 [12.4 kB] Get:382 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3ubuntu1 [79.4 kB] Get:383 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] Get:384 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6build1 [15.0 MB] Get:385 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] Get:386 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-3 [421 kB] Get:387 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-7 [3966 kB] Get:388 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tz all 2024.1-2 [31.4 kB] Get:389 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-3 [91.1 kB] Get:390 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB] Get:391 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] Get:392 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB] Get:393 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] Get:394 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu3 [888 kB] Get:395 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] Get:396 http://ftpmaster.internal/ubuntu noble/main arm64 python3-idna all 3.6-2 [46.0 kB] Get:397 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] Get:398 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-2build1 [48.5 kB] Get:399 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pyparsing all 3.1.1-1 [86.2 kB] Get:400 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 24.0-1 [41.1 kB] Get:401 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu5 [5963 kB] Get:402 http://ftpmaster.internal/ubuntu noble/main arm64 sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1012 kB] Get:403 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mrcfile all 1.4.3-3 [110 kB] Get:404 http://ftpmaster.internal/ubuntu noble/main arm64 python3-msgpack arm64 1.0.3-3build2 [77.9 kB] Get:405 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pint all 0.19.2-1 [170 kB] Get:406 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nxmx all 0.0.3-2 [15.3 kB] Get:407 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB] Get:408 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-orderedset arm64 2.0.3+ds1-2build1 [57.9 kB] Get:409 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-wheel all 0.42.0-2 [53.1 kB] Get:410 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pip all 24.0+dfsg-1ubuntu1 [1316 kB] Get:411 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] Get:412 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-procrunner all 2.3.3-1 [11.9 kB] Get:413 http://ftpmaster.internal/ubuntu noble/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB] Get:414 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pycbf arm64 0.9.7+dfsg1-3.1build2 [150 kB] Get:415 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5.sip arm64 12.13.0-1build3 [64.0 kB] Get:416 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5 arm64 5.15.10+dfsg-1build6 [2557 kB] Get:417 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5.qtopengl arm64 5.15.10+dfsg-1build6 [119 kB] Get:418 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pymol arm64 2.5.0+dfsg-1build6 [3822 kB] Get:419 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] Get:420 http://ftpmaster.internal/ubuntu noble/main arm64 python3-urllib3 all 2.0.7-1 [113 kB] Get:421 http://ftpmaster.internal/ubuntu noble/main arm64 python3-requests all 2.31.0+dfsg-1ubuntu1 [50.7 kB] Get:422 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-tqdm all 4.66.2-2 [91.1 kB] Get:423 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-wxgtk4.0 arm64 4.2.1+dfsg-3build2 [7617 kB] Get:424 http://ftpmaster.internal/ubuntu noble/universe arm64 scons all 4.5.2+dfsg-1 [577 kB] Get:425 http://ftpmaster.internal/ubuntu noble/main arm64 dh-exec arm64 0.29build1 [25.6 kB] Get:426 http://ftpmaster.internal/ubuntu noble/universe arm64 libcbf-dev arm64 0.9.7+dfsg1-3.1build2 [469 kB] Get:427 http://ftpmaster.internal/ubuntu noble/universe arm64 libeigen3-dev all 3.4.0-4 [1056 kB] Get:428 http://ftpmaster.internal/ubuntu noble/main arm64 liblz4-dev arm64 1.9.4-1build1 [89.5 kB] Preconfiguring packages ... Fetched 241 MB in 18s (13.4 MB/s) Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... 15845 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.3-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.3-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.1-2build1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.3-1_arm64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Setting up libpython3.12-minimal:arm64 (3.12.3-1) ... Setting up libexpat1:arm64 (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 16163 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.3-0ubuntu1_arm64.deb ... 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Setting up libdbus-1-3:arm64 (1.14.10-4ubuntu4) ... Setting up liblzf1:arm64 (3.6-4) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:arm64 (1.0.13-3build1) ... Setting up libimagequant0:arm64 (2.18.0-1build1) ... Setting up pymol-data (2.5.0+dfsg-1build6) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:arm64 (3.0.13-0ubuntu3) ... Setting up libhwloc15:arm64 (2.10.0-1build1) ... Setting up libmmdb2-dev (2.0.22-1) ... Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... Setting up autopoint (0.21-14ubuntu2) ... Setting up libboost-numpy1.83-dev (1.83.0-2.1ubuntu3) ... Setting up liblz4-dev:arm64 (1.9.4-1build1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-2build1) ... Setting up libsensors5:arm64 (1:3.6.0-9build1) ... Setting up liblerc-dev:arm64 (4.0.0+ds-4ubuntu2) ... Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu3) ... Setting up libglapi-mesa:arm64 (24.0.5-1ubuntu1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-5ubuntu3) ... Setting up libssh-4:arm64 (0.10.6-2build2) ... Setting up libgfortran5:arm64 (14-20240412-0ubuntu1) ... Setting up libvulkan1:arm64 (1.3.275.0-1build1) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-2.1ubuntu3) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.3.2-0.4build3) ... Setting up liblzma-dev:arm64 (5.6.1+really5.4.5-1) ... Setting up libicu74:arm64 (74.2-1ubuntu3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up libmtdev1t64:arm64 (1.1.6-1.1build1) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... Setting up libxshmfence1:arm64 (1.3-1build5) ... Setting up at-spi2-common (2.52.0-1build1) ... Setting up libccp4c0t64:arm64 (8.0.0-2ubuntu1) ... Setting up dbus-session-bus-common (1.14.10-4ubuntu4) ... Setting up libuchardet0:arm64 (0.0.8-1build1) ... Setting up libnl-3-200:arm64 (3.7.0-0.3build1) ... Setting up debugedit (1:5.0-5build2) ... Setting up libmd4c0:arm64 (0.4.8-1build1) ... Setting up libopenjp2-7:arm64 (2.5.0-2build3) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ... Setting up libthai-data (0.1.29-2build1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-9ubuntu2) ... Setting up libglu1-mesa:arm64 (9.0.2-1.1build1) ... Setting up libwayland-egl1:arm64 (1.22.0-2.1build1) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-2.1ubuntu3) ... Setting up libopengl-dev:arm64 (1.7.0-1build1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up dbus-system-bus-common (1.14.10-4ubuntu4) ... Setting up libsharpyuv-dev:arm64 (1.3.2-0.4build3) ... Setting up python-matplotlib-data (3.6.3-1ubuntu5) ... Setting up libwebpmux3:arm64 (1.3.2-0.4build3) ... Setting up libbsd0:arm64 (0.12.1-1build1) ... Setting up libdeflate-dev:arm64 (1.19-1build1) ... Setting up libdrm-common (2.4.120-2build1) ... Setting up libevdev2:arm64 (1.13.1+dfsg-1build1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3ubuntu3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (2.0.0+dfsg-1) ... Setting up libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu8) ... Setting up dbus-bin (1.14.10-4ubuntu4) ... Setting up libonig5:arm64 (6.9.9-1build1) ... Setting up libgudev-1.0-0:arm64 (1:238-5ubuntu1) ... Setting up libsz2:arm64 (1.1.2-1build1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpopt0:arm64 (1.19+dfsg-1build1) ... Setting up libann-cctbx-dev (1.1.2+doc-9build1) ... Setting up libccp4f0:arm64 (8.0.0-2ubuntu1) ... Setting up libwacom-common (2.10.0-2) ... Setting up libxkbcommon0:arm64 (1.6.0-1build1) ... Setting up libwayland-client0:arm64 (1.22.0-2.1build1) ... Setting up libjpeg8:arm64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2023.2-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:arm64 (2:1.0.10-1build3) ... Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu6) ... Setting up liblapack3:arm64 (3.12.0-3build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1ubuntu2) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libxcb-xfixes0:arm64 (1.15-1ubuntu2) ... Setting up libssm2:arm64 (1.4.0-2) ... Setting up libatk1.0-0t64:arm64 (2.52.0-1build1) ... Setting up libxau-dev:arm64 (1:1.0.9-1build6) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-2.1ubuntu3) ... Setting up libpython3.12-stdlib:arm64 (3.12.3-1) ... Setting up libxcb-xinput0:arm64 (1.15-1ubuntu2) ... Setting up libcurl4t64:arm64 (8.5.0-2ubuntu10) ... Setting up libccp4-dev:arm64 (8.0.0-2ubuntu1) ... Setting up libtool (2.4.7-7build1) ... Setting up libxcb-render0:arm64 (1.15-1ubuntu2) ... Setting up libfftw3-bin (3.3.10-1ubuntu3) ... Setting up libwacom9:arm64 (2.10.0-2) ... Setting up libjq1:arm64 (1.7.1-3build1) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-9ubuntu2) ... Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... Setting up libxcb-glx0:arm64 (1.15-1ubuntu2) ... Setting up libwebpdemux2:arm64 (1.3.2-0.4build3) ... Setting up python3.12 (3.12.3-1) ... Setting up libedit2:arm64 (3.1-20230828-1build1) ... Setting up libxcb-keysyms1:arm64 (0.4.0-1build4) ... Setting up libaec-dev:arm64 (1.1.2-1build1) ... Setting up libxcb-shape0:arm64 (1.15-1ubuntu2) ... Setting up libavahi-common3:arm64 (0.8-13ubuntu6) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-2.1ubuntu3) ... Setting up libjbig-dev:arm64 (2.1-6.1ubuntu2) ... Setting up libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu10) ... Setting up libxcb-render-util0:arm64 (0.3.9-1build4) ... Setting up libxcb-shm0:arm64 (1.15-1ubuntu2) ... Setting up libxcb-icccm4:arm64 (0.4.1-1.1build3) ... Setting up dbus-daemon (1.14.10-4ubuntu4) ... Setting up xfonts-utils (1:7.7+6build3) ... Setting up libcolord2:arm64 (1.4.7-1build2) ... Setting up libxcb-util1:arm64 (0.4.0-1build3) ... Setting up pkgconf:arm64 (1.8.1-2build1) ... Setting up libinput-bin (1.25.0-1ubuntu2) ... Setting up libxcb-xkb1:arm64 (1.15-1ubuntu2) ... Setting up libxcb-image0:arm64 (0.4.0-2build1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3build1) ... Setting up libxcb-present0:arm64 (1.15-1ubuntu2) ... Setting up libdconf1:arm64 (0.40.0-4build2) ... Setting up libpython3.12t64:arm64 (3.12.3-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2build1) ... Setting up libxdmcp-dev:arm64 (1:1.1.3-0ubuntu6) ... Setting up libwebp-dev:arm64 (1.3.2-0.4build3) ... Setting up libxcb-xinerama0:arm64 (1.15-1ubuntu2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:arm64 (1:17.0.6-9ubuntu1) ... Setting up libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu10) ... Setting up libxcb-sync1:arm64 (1.15-1ubuntu2) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-2.1ubuntu3) ... Setting up libraqm0:arm64 (0.10.1-1build1) ... Setting up dbus (1.14.10-4ubuntu4) ... Setting up shared-mime-info (2.4-4) ... Setting up libboost-numpy-dev (1.83.0.1ubuntu2) ... Setting up libxkbcommon-x11-0:arm64 (1.6.0-1build1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up pkg-config:arm64 (1.8.1-2build1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libssm-dev:arm64 (1.4.0-2) ... Setting up libxcb-dri2-0:arm64 (1.15-1ubuntu2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:arm64 (2.4.120-2build1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu2) ... Setting up libwayland-cursor0:arm64 (1.22.0-2.1build1) ... Setting up libxcb-randr0:arm64 (1.15-1ubuntu2) ... Setting up xml-core (0.19) ... Setting up jq (1.7.1-3build1) ... Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ... Setting up libpam-systemd:arm64 (255.4-1ubuntu8) ... Setting up libx11-6:arm64 (2:1.8.7-1build1) ... Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3ubuntu3) ... Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... Setting up libwxbase3.2-1t64:arm64 (3.2.4+dfsg-4build1) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... Setting up libtiffxx6:arm64 (4.5.1+git230720-4ubuntu2) ... Setting up libxcomposite1:arm64 (1:0.4.5-1build3) ... Setting up libsm6:arm64 (2:1.2.3-1build3) ... Setting up libfftw3-dev:arm64 (3.3.10-1ubuntu3) ... Setting up libavahi-client3:arm64 (0.8-13ubuntu6) ... Setting up rsync (3.2.7-1ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:arm64 (3.12.3-0ubuntu1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... Setting up libdrm-amdgpu1:arm64 (2.4.120-2build1) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-2.1ubuntu3) ... Setting up libxcb-dri3-0:arm64 (1.15-1ubuntu2) ... Setting up libinput10:arm64 (1.25.0-1ubuntu2) ... Setting up gtk-update-icon-cache (3.24.41-4ubuntu1) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... Setting up libx11-xcb1:arm64 (2:1.8.7-1build1) ... Setting up libibverbs1:arm64 (50.0-2build2) ... Setting up fontconfig (2.15.0-1.1ubuntu2) ... Regenerating fonts cache... done. Setting up libnetcdf19t64:arm64 (1:4.9.2-5ubuntu4) ... Setting up libdrm-nouveau2:arm64 (2.4.120-2build1) ... Setting up libxdamage1:arm64 (1:1.1.6-1build1) ... Setting up libxcb1-dev:arm64 (1.15-1ubuntu2) ... Setting up libcbf1t64:arm64 (0.9.7+dfsg1-3.1build2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... Setting up libgbm1:arm64 (24.0.5-1ubuntu1) ... Setting up ibverbs-providers:arm64 (50.0-2build2) ... Setting up libdrm-radeon1:arm64 (2.4.120-2build1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:arm64 (1.52.1+ds-1build1) ... Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... Setting up libgl1-mesa-dri:arm64 (24.0.5-1ubuntu1) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... Setting up libx11-dev:arm64 (2:1.8.7-1build1) ... Setting up libxext6:arm64 (2:1.3.4-1build2) ... Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-3.1ubuntu4) ... Setting up python3 (3.12.3-0ubuntu1) ... Setting up libpython3.12-dev:arm64 (3.12.3-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up python3-wheel (0.42.0-2) ... Setting up libcairo2:arm64 (1.18.0-3build1) ... Setting up python3-psutil (5.9.8-2build2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-orderedset (2.0.3+ds1-2build1) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:arm64 (10.2.0-1build1) ... Setting up dbus-user-session (1.14.10-4ubuntu4) ... Setting up libqt5core5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up python3-decorator (5.1.1-5) ... Setting up libegl-mesa0:arm64 (24.0.5-1ubuntu1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up libtiff-dev:arm64 (4.5.1+git230720-4ubuntu2) ... Setting up libxfixes3:arm64 (1:6.0.0-2build1) ... Setting up libnotify4:arm64 (0.8.3-1build2) ... Setting up python3-brotli (1.1.0-2build2) ... Setting up python3-cycler (0.11.0-2) ... Setting up libxinerama1:arm64 (2:1.1.4-3build1) ... Setting up python3-pycbf (0.9.7+dfsg1-3.1build2) ... Setting up python3-kiwisolver (1.4.4-2build1) ... Setting up python3-idna (3.6-2) ... Setting up libxrandr2:arm64 (2:1.5.2-2build1) ... Setting up python3.12-dev (3.12.3-1) ... Setting up python3-urllib3 (2.0.7-1) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-pyqt5.sip (12.13.0-1build3) ... Setting up python3-lxml:arm64 (5.2.1-1) ... Setting up libegl1:arm64 (1.7.0-1build1) ... Setting up libqt5sql5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up librdmacm1t64:arm64 (50.0-2build2) ... Setting up python3-dateutil (2.8.2-3ubuntu1) ... Setting up python3-msgpack (1.0.3-3build2) ... Setting up libcairo-gobject2:arm64 (1.18.0-3build1) ... Setting up libxss1:arm64 (1:1.2.3-1build3) ... Setting up libpangoft2-1.0-0:arm64 (1.52.1+ds-1build1) ... Setting up python3-mpmath (1.2.1-3) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... Setting up python3-appdirs (1.4.4-4) ... Setting up libcups2t64:arm64 (2.4.7-1.2ubuntu7) ... Setting up python3-procrunner (2.3.3-1) ... Setting up libboost-thread-dev:arm64 (1.83.0.1ubuntu2) ... Setting up libpangocairo-1.0-0:arm64 (1.52.1+ds-1build1) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up libfabric1:arm64 (1.17.0-3build2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up libucx0:arm64 (1.16.0+ds-5ubuntu1) ... Setting up libxft2:arm64 (2.3.6-1build1) ... Setting up libqt5dbus5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up libglx-mesa0:arm64 (24.0.5-1ubuntu1) ... Setting up libpython3-dev:arm64 (3.12.3-0ubuntu1) ... Setting up python3-cairo (1.25.1-2build2) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up libxi6:arm64 (2:1.8.1-1build1) ... Setting up libglx0:arm64 (1.7.0-1build1) ... Setting up python3-lz4 (4.0.2+dfsg-1build4) ... Setting up python3-pytest (7.4.4-1) ... Setting up libxtst6:arm64 (2:1.2.3-1.1build1) ... Setting up libtk8.6:arm64 (8.6.14-1build1) ... Setting up libxcursor1:arm64 (1:1.2.1-1build1) ... Setting up python3-tqdm (4.66.2-2) ... Setting up libqt5network5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... Setting up libqt5xml5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up python3-all (3.12.3-0ubuntu1) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up dconf-service (0.40.0-4build2) ... Setting up dh-exec (0.29build1) ... Setting up libqt5test5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up libhwloc-plugins:arm64 (2.10.0-1build1) ... Setting up pybind11-dev (2.11.1-2) ... Setting up python3-fs (2.4.16-3) ... Setting up python3-pint (0.19.2-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libgl1:arm64 (1.7.0-1build1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:arm64 (3.12.3-0ubuntu1) ... Setting up libatspi2.0-0t64:arm64 (2.52.0-1build1) ... Setting up python3-dev (3.12.3-0ubuntu1) ... Setting up python3-requests (2.31.0+dfsg-1ubuntu1) ... Setting up libboost-python1.83-dev (1.83.0-2.1ubuntu3) ... Setting up libhdf5-dev (1.10.10+repack-3.1ubuntu4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up scons (4.5.2+dfsg-1) ... Setting up libpmix2t64:arm64 (5.0.1-4.1build1) ... Setting up python3-pip (24.0+dfsg-1ubuntu1) ... Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ... Setting up libglew2.2:arm64 (2.2.0-4build1) ... Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ... Setting up python3-reportlab (4.1.0-4) ... Setting up libglx-dev:arm64 (1.7.0-1build1) ... Setting up python3-contourpy (1.0.7-2build1) ... Setting up libgl-dev:arm64 (1.7.0-1build1) ... Setting up python3-mrcfile (1.4.3-3) ... Setting up dh-python (6.20240401) ... Setting up python3-all-dev (3.12.3-0ubuntu1) ... Setting up libatk-bridge2.0-0t64:arm64 (2.52.0-1build1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... Setting up python3-scipy (1.11.4-6build1) ... Setting up dconf-gsettings-backend:arm64 (0.40.0-4build2) ... Setting up blt (2.5.3+dfsg-7build1) ... Setting up sfftw2 (2.1.5-6build2) ... Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... Setting up python3-tk:arm64 (3.12.3-0ubuntu1) ... Setting up python3-opengl (3.1.7+dfsg-1) ... /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' '''OpenGL extension AMD.vertex_shader_tessellator Setting up libboost-python-dev (1.83.0.1ubuntu2) ... Setting up libqt5gui5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up fftw2 (2.1.5-6build2) ... Setting up python3-pil.imagetk:arm64 (10.2.0-1build1) ... Setting up libcbf-dev:arm64 (0.9.7+dfsg1-3.1build2) ... Setting up python3-h5py (3.10.0-1ubuntu3) ... Setting up sfftw-dev (2.1.5-6build2) ... Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1build1) ... Setting up libclipper2:arm64 (2.1.20201109-2build1) ... Setting up fftw-dev (2.1.5-6build2) ... Setting up python3-nxmx (0.0.3-2) ... Setting up libgtk-3-common (3.24.41-4ubuntu1) ... Setting up libqt5widgets5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up libqt5help5:arm64 (5.15.13-1) ... Setting up libclipper-dev:arm64 (2.1.20201109-2build1) ... Setting up libqt5opengl5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up libqt5printsupport5t64:arm64 (5.15.13+dfsg-1ubuntu1) ... Setting up libqt5designer5:arm64 (5.15.13-1) ... Setting up python3-pyqt5 (5.15.10+dfsg-1build6) ... Setting up python3-pyqt5.qtopengl (5.15.10+dfsg-1build6) ... Setting up python3-pymol (2.5.0+dfsg-1build6) ... /usr/lib/python3/dist-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' getkee = re.compile("^>\s+<([^>]*)>") /usr/lib/python3/dist-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' gettag = re.compile("^>\s+<[^>]*>\s+\((.*)\)") /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' g = re.search("(.*)(\..*)$", save_file) /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' if re.search("\.pym*$|\.PYM*$",ofile): /usr/lib/python3/dist-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' if re.search("[0-9]*\.png$",fname): # remove numbering, etc. /usr/lib/python3/dist-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' fname = re.sub("[0-9]*\.png$","",fname) /usr/lib/python3/dist-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' if re.search("[0-9]*\.ppm$",fname): /usr/lib/python3/dist-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' fname = re.sub("[0-9]*\.ppm$","",fname) /usr/lib/python3/dist-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' '''Return full path to executable or None. /usr/lib/python3/dist-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' input = re.sub("\s"," ",specification) /usr/lib/python3/dist-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' remove_lists_re = re.compile("\[[^\]]*\]") /usr/lib/python3/dist-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' if re.search("\.py$|\.pym$",path) is not None: /usr/lib/python3/dist-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' ''' /usr/lib/python3/dist-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' re_pat = re.compile("[0-9]+\.") /usr/lib/python3/dist-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' new_file = re.sub("\.pse$",".psw",new_file,re.I) /usr/lib/python3/dist-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' new_file = re.sub("\.psw$",".pse",new_file,re.I) /usr/lib/python3/dist-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' self.prefix = 'Label text: \888' Setting up python3-fonttools (4.46.0-1build2) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk-3-0t64:arm64 (3.24.41-4ubuntu1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up libwxgtk3.2-1t64:arm64 (3.2.4+dfsg-4build1) ... Setting up libwxgtk-gl3.2-1t64:arm64 (3.2.4+dfsg-4build1) ... Setting up python3-matplotlib (3.6.3-1ubuntu5) ... Setting up python3-wxgtk4.0 (4.2.1+dfsg-3build2) ... Setting up humanity-icon-theme (0.6.16) ... Setting up ubuntu-mono (24.04-0ubuntu1) ... Processing triggers for systemd (255.4-1ubuntu8) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in amd64 arm64 armel armhf i386 ppc64 ppc64el riscv64 s390x) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 arm64 (aarch64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu4 gcc-13_13.2.0-23ubuntu4 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 linux-libc-dev_6.8.0-31.31 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 adwaita-icon-theme_46.0-1 apt_2.7.14build2 apt-utils_2.7.14build2 at-spi2-common_2.52.0-1build1 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu10 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-aarch64-linux-gnu_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 blt_2.5.3+dfsg-7build1 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu4 cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu4 cpp-aarch64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 dbus_1.14.10-4ubuntu4 dbus-bin_1.14.10-4ubuntu4 dbus-daemon_1.14.10-4ubuntu4 dbus-session-bus-common_1.14.10-4ubuntu4 dbus-system-bus-common_1.14.10-4ubuntu4 dbus-user-session_1.14.10-4ubuntu4 dconf-gsettings-backend_0.40.0-4build2 dconf-service_0.40.0-4build2 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-exec_0.29build1 dh-python_6.20240401 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.34-1 fftw-dev_2.1.5-6build2 fftw2_2.1.5-6build2 file_1:5.45-3build1 findutils_4.9.0-5build1 fontconfig_2.15.0-1.1ubuntu2 fontconfig-config_2.15.0-1.1ubuntu2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-lato_2.015-1 fonts-lyx_2.4.0~RC3-1build4 fonts-urw-base35_20200910-8 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu4 g++-13-aarch64-linux-gnu_13.2.0-23ubuntu4 g++-aarch64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu4 gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu4 gcc-13-base_13.2.0-23ubuntu4 gcc-14-base_14-20240412-0ubuntu1 gcc-aarch64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gtk-update-icon-cache_3.24.41-4ubuntu1 gzip_1.12-1ubuntu3 hdf5-helpers_1.10.10+repack-3.1ubuntu4 hicolor-icon-theme_0.17-2 hostname_3.23+nmu2ubuntu2 humanity-icon-theme_0.6.16 ibverbs-providers_50.0-2build2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 jq_1.7.1-3build1 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libaec-dev_1.1.2-1build1 libaec0_1.1.2-1build1 libann-cctbx-dev_1.1.2+doc-9build1 libann-cctbx0_1.1.2+doc-9build1 libantlr3c-3.4-0_3.4+dfsg-4build2 libantlr3c-dev_3.4+dfsg-4build2 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240412-0ubuntu1 libassuan0_2.5.6-1build1 libatk-bridge2.0-0t64_2.52.0-1build1 libatk1.0-0t64_2.52.0-1build1 libatomic1_14-20240412-0ubuntu1 libatspi2.0-0t64_2.52.0-1build1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libavahi-client3_0.8-13ubuntu6 libavahi-common-data_0.8-13ubuntu6 libavahi-common3_0.8-13ubuntu6 libbinutils_2.42-4ubuntu2 libblas3_3.12.0-3build1 libblkid1_2.39.3-9ubuntu6 libboost-atomic1.83-dev_1.83.0-2.1ubuntu3 libboost-atomic1.83.0_1.83.0-2.1ubuntu3 libboost-chrono1.83-dev_1.83.0-2.1ubuntu3 libboost-chrono1.83.0t64_1.83.0-2.1ubuntu3 libboost-date-time1.83-dev_1.83.0-2.1ubuntu3 libboost-date-time1.83.0_1.83.0-2.1ubuntu3 libboost-dev_1.83.0.1ubuntu2 libboost-numpy-dev_1.83.0.1ubuntu2 libboost-numpy1.83-dev_1.83.0-2.1ubuntu3 libboost-numpy1.83.0_1.83.0-2.1ubuntu3 libboost-python-dev_1.83.0.1ubuntu2 libboost-python1.83-dev_1.83.0-2.1ubuntu3 libboost-python1.83.0_1.83.0-2.1ubuntu3 libboost-serialization1.83-dev_1.83.0-2.1ubuntu3 libboost-serialization1.83.0_1.83.0-2.1ubuntu3 libboost-system1.83-dev_1.83.0-2.1ubuntu3 libboost-system1.83.0_1.83.0-2.1ubuntu3 libboost-thread-dev_1.83.0.1ubuntu2 libboost-thread1.83-dev_1.83.0-2.1ubuntu3 libboost-thread1.83.0_1.83.0-2.1ubuntu3 libboost1.83-dev_1.83.0-2.1ubuntu3 libbrotli1_1.1.0-2build2 libbsd0_0.12.1-1build1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcairo-gobject2_1.18.0-3build1 libcairo2_1.18.0-3build1 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcbf-dev_0.9.7+dfsg1-3.1build2 libcbf1t64_0.9.7+dfsg1-3.1build2 libcc1-0_14-20240412-0ubuntu1 libccp4-data_8.0.0-2ubuntu1 libccp4-dev_8.0.0-2ubuntu1 libccp4c0t64_8.0.0-2ubuntu1 libccp4f0_8.0.0-2ubuntu1 libclipper-dev_2.1.20201109-2build1 libclipper2_2.1.20201109-2build1 libcolord2_1.4.7-1build2 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcups2t64_2.4.7-1.2ubuntu7 libcurl3t64-gnutls_8.5.0-2ubuntu10 libcurl4-openssl-dev_8.5.0-2ubuntu10 libcurl4t64_8.5.0-2ubuntu10 libdatrie1_0.2.13-3build1 libdb5.3t64_5.3.28+dfsg2-7 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util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu3 x11proto-dev_2023.2-1 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build3 xkb-data_2.41-2ubuntu1 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: amd64 arm64 armel armhf i386 ppc64 ppc64el riscv64 s390x Version: 2023.12+ds2+~3.17.0+ds1-4build3 Maintainer: Ubuntu Developers Uploaders: Picca Frédéric-Emmanuel , Radostan Riedel , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Testsuite: autopkgtest Testsuite-Triggers: bitshuffle, g++, python3-all, python3-dials-data, python3-h5py, python3-pytest, python3-pytest-mock, python3-pytest-regressions Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-h5py (>= 3) , python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-nxmx, python3-orderedset, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest , python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm , python3-wxgtk4.0, rsync, scons Package-List: libcctbx-dev deb devel optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x libcctbx0 deb libs optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x python3-cctbx deb python optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x Checksums-Sha1: 583bc5895221491d4781f9b93c10e83631ea2a6c 352408 cctbx_2023.12+ds2+~3.17.0+ds1.orig-dxtbx.tar.xz d8d510a0b3209e405f33e661c932251e5a9927e6 23566808 cctbx_2023.12+ds2+~3.17.0+ds1.orig.tar.xz 3eddeca0b8abe084d7eaf595a55a176ea5f6b5f6 417096 cctbx_2023.12+ds2+~3.17.0+ds1-4build3.debian.tar.xz Checksums-Sha256: 82bd787fee9624766cb748f58368535bcf7bb35100c660f397a07e93b5b906da 352408 cctbx_2023.12+ds2+~3.17.0+ds1.orig-dxtbx.tar.xz b9fb29501e5916d780e9088415d738fa4f115e2b698908ade233a1295fb352f7 23566808 cctbx_2023.12+ds2+~3.17.0+ds1.orig.tar.xz 0ab52126dff12f87ad89c869534e950e25d22c24d1411a09f600183954763b02 417096 cctbx_2023.12+ds2+~3.17.0+ds1-4build3.debian.tar.xz Files: c4433045379327608dad40e2fb4f23a4 352408 cctbx_2023.12+ds2+~3.17.0+ds1.orig-dxtbx.tar.xz 5f5060528d2079c30a309afdea3c6a28 23566808 cctbx_2023.12+ds2+~3.17.0+ds1.orig.tar.xz 0d2d8de56c3946d2fe6fed47dff3836a 417096 cctbx_2023.12+ds2+~3.17.0+ds1-4build3.debian.tar.xz Original-Maintainer: Debian Science Maintainers -----BEGIN PGP SIGNATURE----- iQJOBAEBCgA4FiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmYmgt0aHHN0ZXZlLmxh bmdhc2VrQHVidW50dS5jb20ACgkQVo0w8yGyEz2IJQ/9Ew55L9m++2pjw5v5HI+b UnieFvJuwgFc9rAK0IVM+Qui5VOTW36GEqqZCgdXK0vINU+GYj+rY64On1z0MBLr 6ey4C0r6CpgpE2bwXjcRKpHgGMil5D/rjswidIW5BlZWJeD1M9jz6TvBKysSbZaq MLB9iWwIj5Hh6jky8ie0xBfR4mW+tW+pzR6bCcOvFjBUiVr2CbGYlRKIDjWO/QIK 119CjodFD0CmP6c/luQS3LgGzNqucfNODKpPzD8HqCFDWxsQ4ab3ikozTfeDkNTs Fy3dWtSZDMKyL+r1BarsvZRPA79JtykZne+olCxns5Fg29W2+xDeKNxB0vl1+98E Q3TDHzkqO/eb/X7THaTiioB6ofrb9FTTIW6j3Ppfcs0iPv32/L6AR5VXTYrnByxD 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applying workaround_env_config.patch dpkg-source: info: applying boost_adaptbx.patch dpkg-source: info: applying reproducible-timestamp.patch dpkg-source: info: applying libtbx_env-per-python-version.patch dpkg-source: info: applying iotbx_with_system_libraries.patch dpkg-source: info: applying 0007-iotbx-mtz-load-ccp4-data-from-the-right-directory.patch dpkg-source: info: applying 0009-scons-soname.patch dpkg-source: info: applying 0010-fix-cbflib_adaptbx-compilation-with-the-system-cbfli.patch dpkg-source: info: applying 0011-dxtbx-use-the-system-libraries.patch dpkg-source: info: applying 0012-dxtbx-remove-hdf5plugin.patch dpkg-source: info: applying 0013-dxtbx-do-not-modify-the-HDF5_PLUGIN_PATH.patch dpkg-source: info: applying 0015-dxtbx-adapte-the-boost_python-link-name.patch dpkg-source: info: applying 0016-cctbx-avoid-FTBFS-when-cctbx-is-already-installed.patch dpkg-source: info: applying 0017-cctbx-do-not-hide-sign-comparison.patch dpkg-source: info: applying 0017-dxtbx-fix-for-unsigned-char-arch.patch dpkg-source: info: applying 0016-unactivated-ucif-compilation.patch dpkg-source: info: applying 0017-smtbx-save-the-generated-test-file-under-tmp.patch dpkg-source: info: applying 0018-iotbx-link-with-ccp4c-instead-of-ccp4io.patch dpkg-source: info: applying 0019-cbflib_adapter-link-cbf-private-with-cbf.patch dpkg-source: info: applying 0020-spotfinder-link-with-dxtbxspotfinder.patch dpkg-source: info: applying 0021-rstbx-link-with-ann_adaptor.patch dpkg-source: info: applying 0022-rstbx-link-rstbx_integration_ext-with-ann_adaptor.patch dpkg-source: info: applying 0023-rstbx-use-the-annself_excluded-namespace-from-ann-cc.patch dpkg-source: info: applying 0024-more-ann-ann-cctbx.patch dpkg-source: info: applying 0031-Add-missing-ctdint-header.patch dpkg-source: info: applying 0026-adapt-format-registry-to-Python-3.12.patch dpkg-source: info: applying 0032-no-future.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28134722 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28134722 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28134722 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2023.12+ds2+~3.17.0+ds1-4build3 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cp -f debian/setup.py setup.py # add missing __init__.py files. It seems that it doesn not work when I use a patch touch serialtbx/__init__.py touch serialtbx/detector/legacy_metrology/__init__.py touch serialtbx/mono_simulation/__init__.py touch serialtbx/util/__init__.py cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_clean pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; find . -name __pycache__ -type d -exec rm -rf {} \; rm -f setup.py rm -rf annlib annlib_adaptbx rm -rf ccp4io ccp4io_adaptbx rm -rf gui_resources rm -f serialtbx/__init__.py rm -f serialtbx/detector/legacy_metrology/__init__.py rm -f serialtbx/mono_simulation/__init__.py rm -f serialtbx/util/__init__.py make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars debian/files rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/ debian/python3-cctbx/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cp -f debian/setup.py setup.py # add missing __init__.py files. It seems that it doesn not work when I use a patch touch serialtbx/__init__.py touch serialtbx/detector/legacy_metrology/__init__.py touch serialtbx/mono_simulation/__init__.py touch serialtbx/util/__init__.py cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources # configure the cctbx python modules dh_auto_configure pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config running config # configure dxtbx python modules dh_auto_configure --sourcedirectory=dxtbx pybuild --configure -i python{version} -p 3.12 --dir dxtbx I: pybuild base:311: python3.12 setup.py config Found 20 dxtbx dispatchers Found 134 Format classes running config # configure the cctbx libtbx build system dh_auto_configure -- -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ \ && {interpreter} /<>/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io" pybuild --configure -i python{version} -p 3.12 -s custom "--configure-args=mkdir -p {build_dir}_ && cd {build_dir}_ && {interpreter} /<>/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io" I: pybuild base:311: mkdir -p '/<>/.pybuild/cpython3_3.12/build'_ && cd '/<>/.pybuild/cpython3_3.12/build'_ && python3.12 /<>/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io Python: 3.12.3 "/usr/bin/python3.12" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=3 LDFLAGS = -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 command_version_suffix: None Relocatable paths anchored at: /<>/.pybuild/cpython3_3.12/build_ Top-down list of all modules involved: wxtbx "/<>/wxtbx" serialtbx "/<>/serialtbx" rstbx "/<>/rstbx" spotfinder "/<>/spotfinder" mmtbx "/<>/mmtbx" gltbx "/<>/gltbx" dxtbx "/<>/dxtbx" iotbx "/<>/iotbx" smtbx "/<>/smtbx" ucif "/<>/ucif" crys3d "/<>/crys3d" cctbx "/<>/cctbx" chiltbx "/<>/chiltbx" ccp4io+adaptbx "/<>/ccp4io" "/<>/ccp4io_adaptbx" cbflib_adaptbx "/<>/cbflib_adaptbx" annlib+adaptbx "/<>/annlib" "/<>/annlib_adaptbx" scitbx "/<>/scitbx" fable "/<>/fable" cma_es "/<>/cma_es" omptbx "/<>/omptbx" boost+adaptbx "/<>/boost" "/<>/boost_adaptbx" tbxx "/<>/tbxx" libtbx "/<>/libtbx" Creating files in build directory: "/<>/.pybuild/cpython3_3.12/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/<>/libtbx/command_line" Processing: "/<>/boost_adaptbx/command_line" Processing: "/<>/fable/command_line" Processing: "/<>/scitbx/command_line" Processing: "/<>/cbflib_adaptbx/command_line" Processing: "/<>/cctbx/command_line" Processing: "/<>/crys3d/command_line" Processing: "/<>/smtbx/command_line" Processing: "/<>/iotbx/command_line" Processing: "/<>/gltbx/command_line" Processing: "/<>/mmtbx/command_line" Processing: "/<>/spotfinder/command_line" Processing: "/<>/rstbx/command_line" Processing: "/<>/wxtbx/command_line" Processing: "/<>/libtbx/libtbx_refresh.py" Processing: "/<>/boost_adaptbx/libtbx_refresh.py" Processing: "/<>/scitbx/libtbx_refresh.py" Generating C++ header files in: "/<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///<>/cctbx-2023.12%2Bds2%2B~3.17.0%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Installing collected packages: dxtbx Running setup.py develop for dxtbx Successfully installed dxtbx Processing: "/<>/cctbx/libtbx_refresh.py" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/cctbx/eltbx" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/include/cctbx/boost_python" Processing: "/<>/crys3d/libtbx_refresh.py" Processing: "/<>/smtbx/libtbx_refresh.py" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/include/smtbx/boost_python" Processing: "/<>/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/<>/dxtbx/libtbx_refresh.py" Processing: "/<>/gltbx/libtbx_refresh.py" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/gltbx" fonts: 8x13 9x15 10x20 /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() Processing: "/<>/mmtbx/libtbx_refresh.py" Done. make[1]: Leaving directory '/<>' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # build the python modules dh_auto_build pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12/build/serialtbx copying serialtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx creating /<>/.pybuild/cpython3_3.12/build/spotfinder copying spotfinder/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder copying spotfinder/exception.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder copying spotfinder/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder creating /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/proq2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/grow_density.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/invariant_domain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/pdb_distances.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/model_vs_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/lattice.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/arrays.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/find_peaks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/f_model_info.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/real_space_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/xmanip_tasks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/pdb_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/msa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/map_tools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/resolve_resources.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/domains_from_pae.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/xmanip.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/clashes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx creating /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/tst_cma_es.py -> /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/cma_es_interface.py -> /<>/.pybuild/cpython3_3.12/build/cma_es creating /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx copying annlib_adaptbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx copying annlib_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx creating /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/fonts.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_motion_on_tab.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/quadrics.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewer_leapmotion.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/gl_managed.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/util.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/generate_functions_bpl.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/gl.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewer.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewers_images.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_cube.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/images.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst_ellipsoids.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewer_example.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst_viewer_utils.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/viewer_utils.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/generate_fonts_ucs_cpp.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_ellipsoids_test.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/extract_opengl_specs.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/glu.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/generate_defines_bpl.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst_fonts.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_scene.py -> /<>/.pybuild/cpython3_3.12/build/gltbx creating /<>/.pybuild/cpython3_3.12/build/rstbx copying rstbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/rstbx copying rstbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/rstbx copying rstbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx creating /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/pdb_editor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/checklistctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/layout.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/symmetry_dialog.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/listeditor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/ensemble_validation.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/icons.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/tables.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/wx4_compatibility.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/metallicbutton.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/windows.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/polygon.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/path_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/qstat_view.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/misc_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/sequence_view.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/segmentedctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/errors.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/bitmaps.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/adp_statistics.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/anomalous_scattering.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/browser.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/heavy_atoms.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/polygon_db_viewer.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/info_panels.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/b_plot.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/process_control.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/mtz_dump.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/custom_restraints.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/app.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/monitor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx creating /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_xmlrpc_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_topological_sort.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/env_config.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/log.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/introspection.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/configure.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/runtime_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/object_oriented_patterns.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/start_print_trace.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_mp.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_citations.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/metric_prefixes.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_runtime_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/mpi4py.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_thread_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/citations.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/table_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/try_hello_world_c.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_profile.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_mp_multicore.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/complex_math.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/clear_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/crossmingw.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/callbacks.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_run.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/find_reference_cycles.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_binary_search.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/cluster.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_program_template.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/dlite.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_pickle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_find_unused_imports.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_fully_buffered_timeout.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/math_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_object_oriented_patterns.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/xmlrpc_server_example.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/str_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/console_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_mp.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_math_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_dlite.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/load_env.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/forward_compatibility.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/subversion.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/cli.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/simplexml.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_pickle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/python_code_parsing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/objgraph.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/option_parser.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_representation.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/xmlrpc_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/fastentrypoints.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/code_analysis.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_mp_state.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/topological_sort.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/containers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/wingide.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/thread_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/assert_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_scheduling.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/subprocess_with_fixes.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/smart_open.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/clusterTests.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/binary_search.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_python_code_parsing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_containers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/program_template.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/file_clutter.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/cpp_function_name.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/pyframe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/progress.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/pyplot.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_str_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/pkg_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx creating /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/validation_lists.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/hydrogens_button.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/view_refinement.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/xmlrpc_server.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/interactive_edit.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/watch_file.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/ligand_checklist.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/simple_zoom_list.py -> /<>/.pybuild/cpython3_3.12/build/cootbx creating /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/math_module.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/translation_search.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/euclidean_model_matching.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/dmtbx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/adptbx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/anharmonic.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/statistics.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/r_free_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/crystal_orientation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/run_examples.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/symmetry_search.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/french_wilson.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/multipolar.py -> /<>/.pybuild/cpython3_3.12/build/cctbx creating /<>/.pybuild/cpython3_3.12/build/fable copying fable/tokenization.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/utils.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/read.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_cout_compile.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_equivalence.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/equivalence.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/simple_compilation.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/intrinsics.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/cout.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_cout.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_read.py -> /<>/.pybuild/cpython3_3.12/build/fable creating /<>/.pybuild/cpython3_3.12/build/qttbx copying qttbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/qttbx copying qttbx/phil.py -> /<>/.pybuild/cpython3_3.12/build/qttbx creating /<>/.pybuild/cpython3_3.12/build/cctbx_website copying cctbx_website/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website copying cctbx_website/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website copying cctbx_website/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website creating /<>/.pybuild/cpython3_3.12/build/omptbx copying omptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/omptbx copying omptbx/tst.py -> /<>/.pybuild/cpython3_3.12/build/omptbx creating /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/r3_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/genetic_algorithm_with_mp.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/restraints.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/regular_grid_on_unit_sphere.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/cubicle_neighbors.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/minimizers.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/direct_search_simulated_annealing.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/fftpack.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/smoothing.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/cross_entropy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/golden_section_search.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/differential_evolution.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/minpack.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/lbfgsb.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/simplex.py -> /<>/.pybuild/cpython3_3.12/build/scitbx creating /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/exercise_compression.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/copy_files.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx creating /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx copying ccp4io_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx copying ccp4io_adaptbx/copy_files.py -> /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx copying ccp4io_adaptbx/tst.py -> /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/hybrid_times.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx creating /<>/.pybuild/cpython3_3.12/build/fftw3tbx copying fftw3tbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fftw3tbx copying fftw3tbx/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/fftw3tbx copying fftw3tbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/fftw3tbx creating /<>/.pybuild/cpython3_3.12/build/simtbx copying simtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/simtbx copying simtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx creating /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/development.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/conftest.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/smtbx creating /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/builders.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_editor.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/pymol.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/merging_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/data_plots.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/cif_mtz_data_labels.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/mtrix_biomt.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_converter.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/simple_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/option_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/csv_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/extract_xtal_data.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/map_tools.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/format.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/map_model_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/wildcard.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/map_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/builders_depending_on_smtbx.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/poscar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/phases.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/logfiles.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/cli_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/ranges.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/table_one.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/crystal_symmetry_from_any.py -> /<>/.pybuild/cpython3_3.12/build/iotbx creating /<>/.pybuild/cpython3_3.12/build/fast_linalg copying fast_linalg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fast_linalg creating /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation copying serialtbx/mono_simulation/util.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation copying serialtbx/mono_simulation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation copying serialtbx/mono_simulation/max_like.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation creating /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/energy_scan_notch_finder.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/time.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/construct_frame.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util creating /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/jungfrau.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/rayonix.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/cspad.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/xtc.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector creating /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/generic_detector.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/cspad_detector.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/metrology.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology creating /<>/.pybuild/cpython3_3.12/build/cudatbx creating /<>/.pybuild/cpython3_3.12/build/cudatbx/math copying cudatbx/math/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/math creating /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering copying cudatbx/scattering/tst_direct_summation.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering copying cudatbx/scattering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering creating /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft copying cudatbx/cufft/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft copying cudatbx/cufft/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft creating /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions copying cudatbx/math/special_functions/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions copying cudatbx/math/special_functions/tst_spherical_bessel_jn.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions creating /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/sweep_strength.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/find_active_area.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/mp_spotfinder_server_read_file.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/thin_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/image_viewer.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/signal_strength.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line creating /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support copying spotfinder/math_support/sphere_formulae.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support copying spotfinder/math_support/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support creating /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox copying spotfinder/core_toolbox/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox copying spotfinder/core_toolbox/close_spots_detail.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox creating /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction copying spotfinder/diffraction/geometry.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction copying spotfinder/diffraction/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction copying spotfinder/diffraction/imagefiles.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction creating /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/multipart_encoder.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/adsc_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_read_file.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/spotfinder_server_read_file.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/pilatus_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache_dials.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/thin_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/spotfinder_server_client_push.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/bcsb_client_example.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_is_alive.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/general_client_example.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/specific_client_example.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache_utils.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache_bcsb.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers creating /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family copying spotfinder/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family copying spotfinder/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family creating /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/practical_heuristics.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox creating /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/stats_distl.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/practical_heuristics.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/image_viewer.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/signal_strength.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/wrappers.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications creating /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/method2_resolution.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice_nztt.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice2.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/spotreporter.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx creating /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_phil.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/correction_vector_plot.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_run3.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel creating /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr copying mmtbx/rsr/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr copying mmtbx/rsr/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_sampled_model_density.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_reduce.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/make_fake_anomalous_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_ligand_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_scattering_type_registry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_prune_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cis_trans_peptide_link.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_maps_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_mtz2map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_statistics_output.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_model_vs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_metal_link_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_refine_anomalous_substructure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_isomorphous_difference_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_add_arrows_on_plot.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_rigid_bond_test.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_rank_scale_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_sort_hetatms.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_anomalous_substructure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_flipping_his.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_special_term_at_end.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_apply_cif_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_models_to_from_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_find_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_model_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_geometry_minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_msa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_map_coeffs_simple.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_loop_closure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_map_model_cc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fix_rotamer_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_no_cryst1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_reduce_timeout.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_ml_estimate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_validation_summary.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cc_star.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_table_one.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_altloc_remediate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_add_h_to_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_schrodinger_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_dynamics_cli.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_ringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_model_vs_sequence.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_minimize_chain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_command_line_input.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_adp_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_alignment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_ccs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_box.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_psi_phi_extraction.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_origin_ids.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_chain_comparison.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_geo_min_restraints_phil.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_altloc_chain_break.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_map_type_parser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_sequence_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_examples.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_clashes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_multi_residue_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_fd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_probe.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_real_space_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression creating /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/skew_kurt_plot.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/tst_hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/data_filtering.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci creating /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/rotamer_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/sample_rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/all_his.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues creating /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/find_ss_from_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/ss_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/proteins.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_segid.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/secondary_structure_params.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/nucleic_acids.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_insertion_codes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/regularize_from_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure creating /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_04.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_00.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/pair_interaction.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_05.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_03.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction creating /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/maxlik.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/tst_maxlik.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/tst_max_lik.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/max_like_non_uniform.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik creating /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/tst_mmtbx_probe_ext.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/Helpers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/AtomTypes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe creating /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/constants.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/tst_sa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/ensemble_cd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/cartesian_dynamics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/simulated_annealing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/tst_cartesian_dynamics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics creating /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_training.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_math.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_fingerprints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_res.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_align.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam creating /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/check_cdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hydrogen_bonding.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_svl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/sf4_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_setup.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/density_dependent_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mutli_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/nucleotides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_omega_cdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_03.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/histidines.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_base_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/altloc_weighting.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hpdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/bond_angle_registry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/metal_coordination_library.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/testing_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_esd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/LinkedResidues.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_hpdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library creating /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/chiral_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/partial_omit_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/select_best_starting_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/grow_density.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/barbed_wire_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/tls_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/molprobity.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/probe2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/sort_hetatms.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/anneal_real_space.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/hydrogenate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/density_modification.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/distance_difference.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/sisa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdb_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/reciprocal_space_arrays.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/monomer_library.comp_as_motif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/show_r_factors_by_shell.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/show_suspicious_residues.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/tls.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/verify_mon_lib_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/water_b_factors.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/flipbase.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/matthews.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_comparison.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fobs_minus_fobs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/apply_ncs_to_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/simulate_low_res_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam_training.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mask.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/find_peaks_holes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/development.aev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/altloc_remediate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/evalurama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdb_atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_vs_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/estimate_bijvoet_ratio.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/extend_sidechains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ssm_rmsd_for_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cdl_lookup.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ntc_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate_suites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/dynamics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/super.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/f000.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/emringer_score.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/maps.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/search_pdb_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fake_f_obs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_ions.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/water_screen.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/probescore_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/compute_map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_to_structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validation_summary.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/prepare_pdb_deposition.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/find_tls_groups.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/kinemage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/suitename_old.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/development_fem.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_to_model_histogram.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/geometry_minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/r_factor_statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fix_rotamer_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/tls_as_xyz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/analyze_static_disorder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/compare_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/strip_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/find_residue_in_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/real_space_diff_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mtz2map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ss_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/real_space_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/get_related_ensemble.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate_puckers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/maximum_entropy_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/reduce2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rank_scale_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/chains_as_models.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_vs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_vs_sequence.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/quantum_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cif_as_mtz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fetch_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdb_view_ad_hoc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mon_lib_cif_triage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fix_rama_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/prune_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/comparama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rebuild_rotarama_cache.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/analyze_peptides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fmodel.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/refine_anomalous_substructure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_box.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rigid_bond_test.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/models_as_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cc_star.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/arginine_geometry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/massage_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_model_distances.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fmodel_simple.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rebuild_cablam_cache.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/perigee.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/afitt_fd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_H_cl_app.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mp_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/afitt.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fab_elbow_angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/secondary_structure_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/secondary_structure_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/xmanip.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/table_one.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_waters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fest.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rama_z.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/remove_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/tst_polygon_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/output.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/tst_gui.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon creating /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/kick.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/fem.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/fobs_minus_fobs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/composite_omit_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/map_model_cc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/mtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/barbed_wire_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/convert_lists.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mean_devs_others_phi_psi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/ensembles.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/evalurama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/fav_lists.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/waters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/model_properties.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/cbd_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/sequence.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/graphics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mean_devs_PRO_phi_psi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/comparama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/comprehensive_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/analyze_peptides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/datasets.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/chain_comparison.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/rama_z.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/experimental.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation creating /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components copying mmtbx/chemical_components/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components copying mmtbx/chemical_components/cif_parser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components copying mmtbx/chemical_components/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components creating /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/external.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/base_qm_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_geo_file_parsing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qm_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/ramachandran.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_c_beta_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_ramachandran.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qi_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/geo_file_parsing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/orca_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_restraints_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/c_beta.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/mopac_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/reference.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/afitt.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints creating /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/Movers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/InteractionGraph.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/tst_mmtbx_reduce_ext.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/Optimizers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce creating /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model creating /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model copying mmtbx/f_model/f_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model copying mmtbx/f_model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model copying mmtbx/f_model/f_model_info.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model creating /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment copying mmtbx/alignment/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/tncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/cartesian_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_restraints_group_list.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_params.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_search.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/chemistry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/ready_set_basics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/electrons.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/hierarchy_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/xtal_screens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/tst_ready_set_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/tst_xtal_screens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/ready_set_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/rdkit_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands creating /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_scaler.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_mosaic.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_aniso_scaler.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/kbu_refinery.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_flat_nonuniform.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/scaler.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/mosaic.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/f_model_all_scales.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent creating /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/tst_analyze_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/backbone.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/analyze_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/tst_backbone.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder creating /<>/.pybuild/cpython3_3.12/build/mmtbx/den copying mmtbx/den/refinement.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/den copying mmtbx/den/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/den copying mmtbx/den/plot_weights.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/den creating /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/select_best_starting_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/anomalous_scatterer_groups.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_group_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/print_statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_occupancy_selections.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/adp_refinement.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_anomalous_scatterer_groups.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/orca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/refinement_flags.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/wx_tardy_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/targets.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tardy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_fit_rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_refinement_flags.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_real_space_simple.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_select_best_starting_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/group.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_group.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/geometry_minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/minimization_ncs_constraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/minimization_monitor.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/inspect_tardy_trajectory.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/occupancies.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/flip_peptide_side_chain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/weights_params.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/energy_monitor.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement creating /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning copying mmtbx/twinning/twin_f_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning copying mmtbx/twinning/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning copying mmtbx/twinning/probabalistic_detwinning.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning creating /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification copying mmtbx/density_modification/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification copying mmtbx/density_modification/tst_density_modification.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification creating /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors creating /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/indexing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/shared_types.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/clash.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/asa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/altloc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/topology.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/sphere_surface_sampling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry creating /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/rotatable_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/grid2d.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/tst_switch_rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/ntc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/fab_elbow_angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_parameters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_approx_zn.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/geometry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_ca_svm.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_k.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pickle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_mg.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/identify.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_geometries.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_validate_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_symmetry_axis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_validate_mg.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/build.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/halides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_environment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/environment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions creating /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage copying mmtbx/kinemage/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage copying mmtbx/kinemage/validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage creating /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/chiral_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/barbed_wire_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/probe2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/hydrogenate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ss_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/water_b_factors.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/mask.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/evalurama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ntc_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate_suites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/probescore_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/pdb_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/prepare_pdb_deposition.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/suitename_old.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/cablam_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ss_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate_puckers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/reduce2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/quantum_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/comparama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/arginine_geometry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rama_z.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs creating /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitealyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/transdent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suiteninput.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suiteninit.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/diangle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/mainchain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/dualparse.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitenout.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitenamedefs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename creating /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/loop_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/tst_extend_sidechains_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/tst_make_library.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/minimize_chain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/extend_sidechains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/cablam_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/make_library.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/merge_models.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/tst_extend_sidechains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ias copying mmtbx/ias/tst_ias.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ias copying mmtbx/ias/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ias creating /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/tools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm15.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm12.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/command_line.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/tls_as_xyz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm13.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm14.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/decompose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/ladp.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm10.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/optimise_amplitudes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm11.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls creating /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa copying mmtbx/sisa/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa creating /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/standard_geometry_cif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_web_services.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/tst_standard_geometry_cif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_web_services.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb creating /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_superpose_ideal.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_server.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/hydrogen_restrictions.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_dna_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/pdb_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_linking.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/conv_v2_v3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/linking_setup.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/idealized_aa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_chg.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_hand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_correct_hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_all_cif_files.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_triage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_types.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rotamer_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/rotamer_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_coordination.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/linking_mixins.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/conformation_dependent_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_deuterium_terminii.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_paral_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/cif_types.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/linking_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/server.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_neutron_distance.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_idealized_aa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_metal_coordination.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_protein_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/bondlength_defaults.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/correct_hydrogen_geometries.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_chiral_values.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_motif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_carbo_linking.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/cif_triage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library creating /<>/.pybuild/cpython3_3.12/build/mmtbx/masks copying mmtbx/masks/tst_masks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/masks copying mmtbx/masks/tst_asu_mask.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/masks copying mmtbx/masks/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/masks creating /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/find.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/validate_H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_8.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_validate_H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/parameterization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/riding.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_6.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/build_hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/specialised_hydrogen_atoms.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_0.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/connectivity.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_minimize.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/reduce_hydrogen.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_9.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_7.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/tst_em_rscc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/em_scoring.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/em_rscc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/tst_emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/em_rolling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer creating /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/absolute_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/mean_f_rms_f.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/relative_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_mean_f_rms_f.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/matthews.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/pair_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_xtriage_twin_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/rip_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/sir_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/fa_estimation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/random_omit.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/twin_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/bayesian_estimator.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/thorough_outlier_test.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_absences.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/siras_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/pre_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/absences.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/make_param.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_sigmaa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/sad_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/data_statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_massage_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_xtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/basic_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/absence_likelihood.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_bayesian_estimator.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/outlier_plots.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/outlier_rejection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/relative_wilson.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_outlier.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/twmad_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/ta_alpha_beta_calc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/fest.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/sigmaa_estimation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/remove_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/massage_twin_detwin_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling creating /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/ordered_solvent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/map_to_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/ensemble_ordered_solvent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent creating /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/tst_rotamer_eval.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/nqh.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval_deprecated.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/n_dim_table.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/graphics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/sidechain_angles.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/rotamer_eval.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer creating /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space copying mmtbx/real_space/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space copying mmtbx/real_space/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_tors_ref_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_cart_ref_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_mtrix.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ramachandran.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_dedeuterate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_utils_merge_models.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_get_vdw_radii.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_merge.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_neutralize_scatterers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search_flips.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_refinement_fft.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_as_xyz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_get_t_scheme.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls creating /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/ss_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_io.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build creating /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/antiparallel_beta.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/how_to.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/regular_helix_definitions.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/parallel_beta.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_find_region_max_value.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_chiral_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_waters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_arguments.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_keep_hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_model_properties.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/run_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_experimental.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_endtoend.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_symmetry_SS.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_do_flips_clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/convert_from_text.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/kinemage_templates.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/probescore_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/mp_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity creating /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints creating /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement creating /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/weight.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/explode_and_refine.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_flipbase.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/flipbase.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_monitor.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residues.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_weight.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/occupancy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/adp.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_6.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_his.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_small_molecule.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/individual_sites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_6.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_7.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/dump_sites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm creating /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/berkeley_ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/ccd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/starting_conformations.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/custom_gm.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure creating /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands copying mmtbx/building/ligands/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands copying mmtbx/building/ligands/tst_00.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands copying mmtbx/building/ligands/lifi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands creating /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_util.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_optimize.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_input.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_masks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_ga.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_mtz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize creating /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/self_match.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/sample.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx creating /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/generate_all.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/gltbx/command_line copying gltbx/command_line/try_imports.py -> /<>/.pybuild/cpython3_3.12/build/gltbx/command_line copying gltbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/gltbx/command_line creating /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.wx_display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.explore_completeness.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.solver.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/slip_viewer.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.create.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/viewer.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/example_viewer.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line creating /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/ersatz_misset.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2_validate.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions_idx.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/compare_mosflm_xds.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2a.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx creating /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/preferences.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/phil_preferences.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/scope.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil creating /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support copying rstbx/sublattice_support/tst_sublattice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support copying rstbx/sublattice_support/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support copying rstbx/sublattice_support/change_basis.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support creating /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/indexing.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/drivers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/pixels3d.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/spotfinder_wrap.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/results_base.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/spotfinder_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/tst.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/processing.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/calibration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/dataset.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/calibration_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/controls.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer creating /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass copying rstbx/bandpass/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass copying rstbx/bandpass/simulated_annealing.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass creating /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core copying rstbx/dials_core/integration_core.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core copying rstbx/dials_core/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core creating /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/slip_helpers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/dual_resolution_helpers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/spot_markup.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps creating /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/tst_ewald_sphere.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/tst_partial_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/tst_predict.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction creating /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/do_index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/tst_dataset1.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/tst_auto_monoscan.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing creating /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/run_labelit_index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/run_spotfinder.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/solver.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/integrate_crude.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/refine_uc_cr.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/tst.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/explore_completeness.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/wx_display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/create.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage creating /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/constants.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/tst_xfel1_simple.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/sim_pdf.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/sim_utils.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation creating /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/stats_index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/spot_shape.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/speckfinder.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/oscillation_shots.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/pixel_spread.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons creating /<>/.pybuild/cpython3_3.12/build/rstbx/array_family copying rstbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/array_family copying rstbx/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/array_family creating /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots copying rstbx/outlier_spots/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots copying rstbx/outlier_spots/fit_distribution.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots creating /<>/.pybuild/cpython3_3.12/build/rstbx/detectors copying rstbx/detectors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/detectors copying rstbx/detectors/silicon.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/detectors creating /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/tools.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/lattice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/force_cell.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/nearest_neighbor.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/sampling.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/outlier_procedure.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/outlier_detection.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/basis_choice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/test_dps.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api creating /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry copying rstbx/symmetry/subgroup.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry copying rstbx/symmetry/sgtbx_adaptor.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry copying rstbx/symmetry/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry creating /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/example_frame_plugin_hidden.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/uc_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/pyslip.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/score_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/tile_generation.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/slip_display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/ring_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/calibration_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/slip_viewer_image_factory.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer creating /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/tst_coordinate_frame_converter.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_converter.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_helpers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx creating /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/cell_assessment.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/lepage.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/sampling.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/zuoreduction.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/constrainment.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/tst_iotbx_converter.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/basis_choice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core creating /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/instrument_specifics.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/detector.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/tst_detector_model.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model creating /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/simple_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/util.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/dials_refinement_preceding_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/stills_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills creating /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_utils_clustering.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg creating /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/parameter_reduction.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/g_gradients.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints creating /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/pdb_editor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/plot_anomalous_scattering.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/inspect_r_free_flags.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/wxpython.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/show_file_info.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/pdb_statistics.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/anomalous_differences_histogram.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/loggraph.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/b_plot.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/wxtbx/reports copying wxtbx/reports/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/reports copying wxtbx/reports/blast.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/reports copying wxtbx/reports/pdb_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/reports creating /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/ints.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/floatctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/intctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/text_base.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/choice_multi.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/choice.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/numbers.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/array_label.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/tribool.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/floats.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/space_group.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/strctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/symop.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/strings.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/path.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/unit_cell.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/boolctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/tree.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/misc_ctrls.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/simple_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls creating /<>/.pybuild/cpython3_3.12/build/wxtbx/plots copying wxtbx/plots/molprobity.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/plots copying wxtbx/plots/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/plots copying wxtbx/plots/emringer.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/plots creating /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/phil.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/python_string.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/pubmed.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx creating /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils copying libtbx/program_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils copying libtbx/program_utils/result.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils copying libtbx/program_utils/statistics_info.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils creating /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/install_csh.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/install_bat.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/copy_all.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/copy_build_libtbx.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/copy_runtime_sources.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle creating /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_untested.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/path_utility.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/git_avoid_merges.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_mac_app.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_unused_imports_crude.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_clutter.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/bundle_as_exe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/py_compile_all.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/list_modules.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_host_and_user.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/nequal.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/easy_qsub.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_stdin_contains_strings.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/remote_processing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/scons.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/extract_code_from_txt.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/list_source_files_sorted_by_size.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/wait_for_file.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_stdin_ends_with.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/clear_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/chunk.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/line_count.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/clean_clutter.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/make_dist.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/help.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/epydoc_run.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_old_style_classes.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_unzipsfx.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/env_run.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/run_pickled_function.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/make_sphinx_html.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/import_all_ext.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_pythonpath.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/run_tests_parallel.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/start_binary_bundle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/phil.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_but_no_repr.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_install_script_bat.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_environ_usage.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/sge_available_slots.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/check_libcpp.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_line_count.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_in_repositories.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/sge_qstat_counts.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_tests.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_python_sys_executable.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/remove_tree.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_number_of_processors.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/raise_exception_for_testing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_dist_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/sphinx_build.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/list_files.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/bootstrap.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/start_process.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_date_and_time.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/analyse_code_comments.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_module_dependencies.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/install_conda.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/printenv.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_commands.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/ipython_shell_start.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_not_show_diff.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_repository_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_reserved_names.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/add_from_future_import_division.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_include_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/seconds_since_the_epoch.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/parallel_simple.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_bin_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_numpy_version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_variable_names.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/import_all_python.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_full_command_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/dtrace.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/any2unix.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_unused_imports.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_python_dependencies.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_files.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_windows_exe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_all_on_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_numeric_version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_env.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_cctbx_bundle_for_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/prime_factors_of.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_build_options.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_build_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_selfx.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_lib_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_stdin.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_under_build.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/install.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/FileServer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/FileClient.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/StartServer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/FileSocket.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/SocketServer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server creating /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/interface.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/parser.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/gui_objects.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/command_line.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst_experimental.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst_interface.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst_tokenizer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tokenizer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/experimental.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil creating /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/looping.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling_helpers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/sge_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/generic.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/communication.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/pbs_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/tst.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/remote.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/lsf.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils creating /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/mainthread.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/philgen.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/file_queue.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/socket_queue.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/parallel_for.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/shared_resource.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/cluster_handler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/process_pool.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/result.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/job_scheduler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/mp_handler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/thread_handler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/stacktrace.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling creating /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils copying libtbx/test_utils/parallel.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils copying libtbx/test_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils copying libtbx/test_utils/pytest.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils creating /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/xcode_build_phase.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/timers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/except_Exception.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development creating /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/regenerate_module_files.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_mac_app.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_windows_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_mac_pkg.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/install_base_packages.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/installer_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/setup_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/write_gui_dispatcher_include.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/bootstrap.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/plus_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/install_conda.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/make_bundle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/rpath.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/install_distribution.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_windows_exe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_cctbx_bundle_for_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/package_defs.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build creating /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/util.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/polling.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/transfer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/errors.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/submission.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/status.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/phase_o_phrenia.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/space_group_matrices.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/convert_ccp4_symop_lib.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/trigonal_r_vs_tetragonal_i.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/cr2o3_consistency_checks.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_phase_o_phrenia.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/list_non_principal_continuous_shifts.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/g_exp_i_partial_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_space_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/site_symmetry_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/adp_symmetry_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/miller_transform.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/maximum_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/g_exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/neutron_structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/change_hand_p31.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/all_axes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/fft_map_electron_density_around_atom.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/site_symmetry_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/find_distances_using_cpp_objects.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/sub_group_graph.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/getting_started.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/random_puckers.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/location_part.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/random_f_calc.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/unit_cell_minimizers.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/view_fft_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives_4.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/steve_collins.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/miller_common_sets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/unit_cell_refinement.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/f_model_example.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/find_sys_abs_equiv_space_groups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/le_page_1982_vs_lebedev_2005.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/lebedev_2005_perturbation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/ccp4_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/quartz_structure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/symops_530.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/hirshfeld_test.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_4.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/cr2o3_primitive_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/space_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/analyze_adp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/reduced_cell_two_folds.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives_3.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_3.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/map_skewness.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples creating /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/read_custom_scattering_dict.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/van_der_waals_radii.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/distance_based_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/fp_fdp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/icsd_radii.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/attenuation_coefficient.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/chemical_elements.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/wavelengths.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/gaussian_fit.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/sasaki.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/neutron.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/e_scattering.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/henke.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/formula.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/tiny_pse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/covalent_radii.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_fft_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sampled_model_density.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_target_functors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sphericity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_diffuse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_refine_xray_curvs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_weighting_schemes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_show_cosets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_loc_res.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_direct_scaling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_double_step_filtration.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_krivy_gruber.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_find_best_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_crystal.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_twin_target.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_triplet_generator.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_coordination_sequences.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_amplitude_normalisation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_minimization_failure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_merge_equivalents.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_geometry_restraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_web_change_basis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_maptbx_structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_adp_aniso_restraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_math_module.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_wilson_plot.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_maptbx_mask.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_special_op_simplifier.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_mem_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_pointgroup_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_tidy_pickling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_direct_space_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_adp_constraints_cartesian.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_geometry_restraints_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_wavelength_units.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_adp_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_f_model.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_geometry_restraints_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_reflection_statistics.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_french_wilson.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_denominators.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_expand_to_p1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_connectivity_allsym.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_statistics_graphs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_statistics.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_create_models_or_maps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_fcalc_fft_stability.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_grouped_data.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_crystal_close_packing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_map_weights_for_symmetry_summation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sf_low_res_accuracy.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_minimization.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_site_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_fast_nv1995.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_emma.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_harker.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_lookup_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_mem.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_pair_asu_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_prepare_map_for_docking.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_data_manipulation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_reciprocal_space_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_crystal_asu_clusters.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_fast_gradients.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_r_free_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_grm_modifications.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_fourier_transform_real_part_at_x.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_grm_pickling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_change_basis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_maptbx_box.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_map_is_periodic.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression creating /<>/.pybuild/cpython3_3.12/build/cctbx/covariance copying cctbx/covariance/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/covariance creating /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/gruber_1973.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/reduction_base.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/gruber_1973_table_1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/krivy_gruber_1976.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/phase_o_phrenia.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/iotbx_cif_validate.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/wyckoff.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/all_axes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/change_hand.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/replay.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/cgi_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/change_basis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/libtbx_help.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/frac_cart.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/io_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/multiple_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/structure_factors_pdb.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/change_setting.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/explore_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/emma.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/browse_settings.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/dispatcher.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/shelx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web creating /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/eltbx.show_fp_fdp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/version.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/cctbx_test_nightly.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/cod_select_and_pickle.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/euclidean_model_matching.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/diffuse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/auto_sharpen.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/find_reticular_twin_laws.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/brehm_diederichs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/wavelength_units.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/xray_structure.show.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/samosa_join.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/precession_view.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/space_group_info.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/segment_and_split_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/structure_factor_timings.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/form_factor_query.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/samosa_scale.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/minimization.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/structure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/scatterer.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/target_functors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/weighting_schemes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/observation_types.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray creating /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/reindexing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/display.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/tst_reindexing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/tst_map_to_asu_isym.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller creating /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/linking_class.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/standard_cif_links.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/energies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/flags.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/distance_least_squares.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_angle_derivs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_proxy_registry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/base_geometry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_motif.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/process_nonbonded_proxies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/auto_linking_types.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints creating /<>/.pybuild/cpython3_3.12/build/cctbx/merging copying cctbx/merging/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/merging copying cctbx/merging/brehm_diederichs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/merging creating /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/rational_matrices_point_groups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/pointgroup_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/harker.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/reticular_twin_laws.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/sys_abs_equiv.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/literal_description.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/reticular_pg_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/bravais_types.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/sub_lattice_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/plane_groups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/show_cosets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/symbol_confidence.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/cosets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/energies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/flags.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints creating /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/cod_refine.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/tst_bfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/eval_iso_vs_refined.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/cif_refine.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/cod_select_and_pickle.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/bfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/tst_dev.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/tardy_adaptor.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/dev.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/pdb_dev.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz creating /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators copying cctbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators copying cctbx/source_generators/flex_fwd_h.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/cctbx/neutron copying cctbx/neutron/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/neutron creating /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol copying cctbx/macro_mol/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol copying cctbx/macro_mol/rotation_parameters.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol creating /<>/.pybuild/cpython3_3.12/build/cctbx/array_family copying cctbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/array_family copying cctbx/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/array_family creating /<>/.pybuild/cpython3_3.12/build/cctbx/geometry copying cctbx/geometry/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry creating /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/burzlaff_zimmermann_dewolff.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/distance_based_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/coordination_sequences.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/super_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/reindex.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/close_packing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/direct_space_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/find_best_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/tst_distance_based_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/tst_super_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal creating /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/electron_density_sampling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/tst_cns_epsilon.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/tst_cns_hl.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/create_models_or_maps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/github.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/direct_or_fft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/make_settings.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/fmt_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/approx_amplitude_vs_resolution.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/run_shelx76.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/cns_density_modification.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/space_group_option_parser.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/make_cns_input.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/debug_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/structure_factor_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/run_shelx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/random_structure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development creating /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/minimization.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_mask.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_loft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_target_and_gradients.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/mem.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/resolution_from_map_and_model.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_bcr.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_ccp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_real_space_refinement_simple.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/mask.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_get_percentile_cutoffs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_interpolation_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/auto_sharpen.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/refine_scales_errors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_asymmetric_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/real_space_refinement_simple.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/refine_sharpening.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_peak_volume_estimate.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_docking.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_atom_curves.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_resolution_from_map_and_model.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/box.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/segment_and_split_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_interpolation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_map_peak_3d_as_2d.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/map_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/masks copying cctbx/masks/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/masks creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/test_levenberg_sparse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/data_subset.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/task4.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/test1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/test_cc_half.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/data_utilities.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/tst_permutations.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/show_results.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/sigma_correction.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/site_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/join.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/scale.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa creating /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/e_scattering_plots.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_approx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_section61_io.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/combine_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_cross_validation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/rez_rez_grant.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/hydrogen_plots.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_kissel.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_io.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/format_gaussian_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development creating /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering copying cctbx/eltbx/xray_scattering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering creating /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell copying cctbx/uctbx/determine_unit_cell/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell creating /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jvx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/web_links.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_index.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/guide_to_notation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations copying cctbx/xray/observations/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations copying cctbx/xray/observations/tst_observations.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_base.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_fft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/misc.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_direct.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_fft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradient_flags.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/global_counters.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/tst_shelxl_wght_ls.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/tst_r1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/r1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets creating /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/check_redundancies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/short_cuts.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/facet_analysis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/cut_plane.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/reference_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu creating /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto creating /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_henke_cpp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/bcr.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr creating /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/fem_include_search_paths.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/show_calls.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/insert_write_at_start_of_each_procedure.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/split.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/read.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/cout.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line creating /<>/.pybuild/cpython3_3.12/build/qttbx/viewers copying qttbx/viewers/chimerax.py -> /<>/.pybuild/cpython3_3.12/build/qttbx/viewers copying qttbx/viewers/__init__.py -> /<>/.pybuild/cpython3_3.12/build/qttbx/viewers creating /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/exercise.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_12_script_compare_ss.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_17_script_rfactors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_19_doc_programming_tips_3.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_8_doc_maps_intro.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_11_script_1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_15_doc_models_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_18_doc_programming_tips_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_13_script_ideal_ss.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_py_from_html.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_2_doc_hlo_intro.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_10_doc_programming_tips_1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_9_doc_maps_boxing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_1_template.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression creating /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line copying cctbx_website/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line copying cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line creating /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/minimizer_comparisons.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/functions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/integrating_a_weighted_sinc_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/lbfgs_recipe.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/flex_array_loops.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/chebyshev_lsq_example.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/immoptibox_ports.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/flex_grid.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/lbfgs_linear_least_squares_fit.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/bootstrap.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/rigid_body_refinement_core.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/principal_axes_of_inertia.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples creating /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/dicts.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/misc.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/tst_random_transform.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/random_transform.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/graph_tools.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/signal_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/command_line.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/tst_graph.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/robust_statistics.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/tst_robust.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/random_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils creating /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx copying scitbx/lstbx/normal_eqns_solving.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx copying scitbx/lstbx/normal_eqns.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx copying scitbx/lstbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx creating /<>/.pybuild/cpython3_3.12/build/scitbx/wigner copying scitbx/wigner/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/wigner copying scitbx/wigner/tst_wigner3j.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/wigner creating /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_2d_zernike.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/ext.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fliege_mayer_900.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/des_3_100_13.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_multivariate_moments.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/besselk.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/minimum_covering_ellipsoid.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_zernike.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/lefebvre.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/undirected_graph.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/multiple_superposition.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/incremental_SO3_sampling.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/spe.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/periodogram.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/des_3_240_21.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_so3_lie_algebra.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/chebyshev_lsq_fit.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/gaussian_fit.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/zernike_align_fft.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/cubic_spline.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/sphere_sphere_intersection.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fliege_mayer_400.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/distributions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/gumbel.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/breakpoint.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fit_peak.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/sieve_of_eratosthenes.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/superpose.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/so3_lie_algebra.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/curve_fitting.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_zernike_mom.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/gaussian.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_bessel_zeros.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/clustering.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_undirected_graph.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fliege_mayer_900_ylm.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/euler_angles.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fit_quadratic_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/farey.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/scale_curves.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math creating /<>/.pybuild/cpython3_3.12/build/scitbx/random copying scitbx/random/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/random creating /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/ext.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/svd.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/eigensystem.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/householder.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg creating /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/bounds.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/realsymmetricpseudoinverse.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/optional.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/reparams.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/minimizer.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/twisted_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/compulsory.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/min_logging.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/auxiliary.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/refinebase.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin creating /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree copying scitbx/suffixtree/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree copying scitbx/suffixtree/single.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree creating /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_rigidity.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/rigidity.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/test_cases_tardy_pdb.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_tardy_tree_find_paths.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_tardy_tree.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/rigidity_matrix_symbolic.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tardy_tree.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph creating /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_func_free_line_search.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_lbfgs_fem.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_mpi_split_evaluator.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_curvatures.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs creating /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/lbfgs_fem.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/flex_fwd_h.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python copying scitbx/boost_python/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python creating /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib copying scitbx/stdlib/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib creating /<>/.pybuild/cpython3_3.12/build/scitbx/array_family copying scitbx/array_family/shared.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/array_family copying scitbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/array_family copying scitbx/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/array_family creating /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/tst_vector.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/vector.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/tst_set.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/set.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/tst_map.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/map.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl creating /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body copying scitbx/rigid_body/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body copying scitbx/rigid_body/tst.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body creating /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface copying scitbx/iso_surface/tst_iso_surface.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface copying scitbx/iso_surface/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface creating /<>/.pybuild/cpython3_3.12/build/scitbx/sparse copying scitbx/sparse/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/sparse creating /<>/.pybuild/cpython3_3.12/build/scitbx/matrix copying scitbx/matrix/row_echelon.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/matrix copying scitbx/matrix/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/matrix creating /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils copying scitbx/graphics_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils copying scitbx/graphics_utils/tst.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils creating /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx copying scitbx/glmtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx creating /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington copying scitbx/examples/bevington/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington copying scitbx/examples/bevington/silver.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington creating /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests copying scitbx/lstbx/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests copying scitbx/lstbx/tests/test_problems.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests copying scitbx/lstbx/tests/tst_normal_equations.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests creating /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_curve_fitting.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_cubic_equation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_halton.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_exp_functions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_g_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_resample.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_weighted_correlation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_euler_angles.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_gcd.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_dmatrix.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_r3_rotation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_clustering.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_quadrature.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_angle_derivative.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_fit_quadratic_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_orthonormal_basis.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_uniform_rotation_matrix.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_line_search.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_fit_peak.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_tetrahedron.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_bessel.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_superpose.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_similarity_indices.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_periodogram.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_math.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests creating /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python copying scitbx/math/boost_python/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python creating /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_functors.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_algebras.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_std_imports.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_all.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/operator_functor_info.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_reductions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_apply.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family creating /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion_hard.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/free_motion_reference_impl.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_simulation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_free_motion.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_molecules.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_featherstone.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_singular.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/featherstone.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_spherical_refinement.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_molecules.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto creating /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_basic.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/make_bundles.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/wx_tardy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tardy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/body_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_energy_plots.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_tardy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/featherstone.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/spatial_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence creating /<>/.pybuild/cpython3_3.12/build/xfel creating /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/isoform.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/simulate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/progress_support.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/split_pickles.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/progress_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp creating /<>/.pybuild/cpython3_3.12/build/xfel/ui copying xfel/ui/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui copying xfel/ui/phil_patch.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui creating /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos copying xfel/vonHamos/test_3_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos copying xfel/vonHamos/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos copying xfel/vonHamos/fit_3_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos creating /<>/.pybuild/cpython3_3.12/build/xfel/amo copying xfel/amo/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo creating /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation copying xfel/mono_simulation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation copying xfel/mono_simulation/mono_treatment.py -> /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation copying xfel/mono_simulation/max_like_pos_neg.py -> /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation creating /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_pyana.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xes_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_circular_gain_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_apply_metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/histogram_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_shifts.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_congruence2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/convert_gain_map_cbf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/frame_extractor.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/list_db_metadata.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cbf_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_optical2cbfheader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_psana.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_pbs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_lsf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/quadrants.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/print_pickle.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_merge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_calibdir2cbfheader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/make_dials_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_generate_circular_gain_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_mpi_submit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/overlay_spectra.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/experiment_json_to_cbf_def.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/postrefine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/radial_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_progress_bar.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/stills_merge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/experiment_manager.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xtc_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_isoform.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/recompute_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_stream_to_pickle.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xes_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/plot_to_subpixel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_cspad_pinwheel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xtc_dump.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/auto_submit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_simulate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/convert_gain_map.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/show_spot_separation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/trial_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/make_mar_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_detector_format_versions.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/detector_residuals.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_slaccalib2cbfheader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/brehm_diederichs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/beamcenter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/runs_sentinel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/make_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/get_next_trial_id.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/jobs_sentinel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/find_highres_shots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_view.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_index.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/experiment_residuals.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/striping.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_xmerge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/weather.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_parameters.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/or_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/jungfrau_metrics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/smooth_spectrum.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/monitor_trials.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/subtract_background.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/fee_calibration.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/launch_fxs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xfel_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_progress_detail.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/FEE_average_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/fee_view.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/frame_unpickler.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_xtc_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cctbx_integration_pickle_viewer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/trumpet_plots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_cbfheader2slaccalib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/drift.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/h5_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_congruence.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/riso.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/monitor_detectors.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/calc_gain_ratio.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_plotcv.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/filter_experiments_by_rmsd.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/upload_mtz.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_pickle2cbf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/mpi_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_display_metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_cbf_metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/view_pixel_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_diff.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/quadrants_cbf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/absorption.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/general_fcalc.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/refine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/predictions_to_edges.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/phil_validation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging creating /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark3.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/flatfile.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/panel_fitting.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark0.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark1.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/quadrant.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark10.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology creating /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/read_geom.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/write_composite_image.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/agipd_from_defs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/agipd_cxigeom2nexus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel creating /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api copying xfel/lcls_api/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api copying xfel/lcls_api/psana_cctbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api copying xfel/lcls_api/exercise_api.py -> /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api creating /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/cctbx_xfel_installer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/reflection_length.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/show_spot_separation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/weather.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/image_pickle_locator.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/mp.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/drift.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/kapton_2019_correction_frame_frame_plugin.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/dials_pickle_reader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/dials_file_matcher.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/split_detector.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util creating /<>/.pybuild/cpython3_3.12/build/xfel/pal copying xfel/pal/jf4m_geom2nexus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/pal copying xfel/pal/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/pal creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/average_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_hybrid_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/spectra_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/display_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/util.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/correction_vector_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/integrate_image_api.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/merging_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_legacy_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/cxi_cc.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/data_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/strong_zulu.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/trumpet_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_updated_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/display_powder_arcs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/completeness_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi creating /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/components.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/multiproc_temp_parame_opt.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/graph.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/parameter_optimizer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc creating /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/powder_util.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/small_cell.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/solve_orientation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/write_orientation_arrows.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell creating /<>/.pybuild/cpython3_3.12/build/xfel/swissfel copying xfel/swissfel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/swissfel copying xfel/swissfel/sync_jf16m_geometry.py -> /<>/.pybuild/cpython3_3.12/build/xfel/swissfel copying xfel/swissfel/jf16m_cxigeom2nexus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/swissfel creating /<>/.pybuild/cpython3_3.12/build/xfel/cftbx copying xfel/cftbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx creating /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/simulate_partial_data.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/singleframe.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/api.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/cluster.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/cluster_groups.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/ui_server.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_run_stats_in_gui.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/get_hit_timestamps.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_run_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_isoform_cloud.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_uc_cloud_from_experiments.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/xfel_gui_launch.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_spotfinder_stats_in_gui.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_run_stats_from_experiments.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_uc_cloud.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/print_run_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_reflection_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/spotfinder_scraper.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/run_stats_plotter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_controls.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/spotfinder_plotter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_init.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/submission_tracker.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_plotter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/tooltips.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/timeit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/trial.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/dxtbx_db.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/frame_logging.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/xfel_db.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/experiment.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/job.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/rungroup.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/tag.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/run.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/merging_log_scraper.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/task.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/dataset.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs copying xfel/ui/db/cfgs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs copying xfel/ui/db/cfgs/shifter_templates.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs creating /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/fxs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_index.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_calib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_c2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/pnccd_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_launch.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/pnccd_hit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_bg.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line copying xfel/merging/command_line/mpi_integrate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line copying xfel/merging/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line copying xfel/merging/command_line/merge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database_sqlite3.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database_fs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database_flex.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/model copying xfel/merging/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/model creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/report copying xfel/merging/report/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/report creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/worker.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/mpi_helper.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/mpi_logger.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/reflection_table_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms copying xfel/merging/algorithms/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs copying xfel/merging/report/graphs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables copying xfel/merging/report/tables/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale copying xfel/merging/application/scale/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale copying xfel/merging/application/scale/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale copying xfel/merging/application/scale/experiment_scaler.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge copying xfel/merging/application/merge/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge copying xfel/merging/application/merge/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge copying xfel/merging/application/merge/merger.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/experiment_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/reflection_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil copying xfel/merging/application/phil/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil copying xfel/merging/application/phil/phil.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/token_passing_left_right.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/reindex_to_reference.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/reindex_to_abc.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/compare_results.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/aux_cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/df_cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/cosym_tranch_align.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/polarization.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/reindex_cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation copying xfel/merging/application/validation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation copying xfel/merging/application/validation/application.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/resolution_binner.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/crystal_model.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group copying xfel/merging/application/group/group_reflections.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group copying xfel/merging/application/group/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group copying xfel/merging/application/group/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate copying xfel/merging/application/integrate/integrate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate copying xfel/merging/application/integrate/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate copying xfel/merging/application/integrate/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/beam_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/intensity_histogram.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/intensity_resolution_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/experiment_resolution_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/unit_cell_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance copying xfel/merging/application/balance/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance copying xfel/merging/application/balance/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance copying xfel/merging/application/balance/load_balancer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils copying xfel/merging/application/utils/data_counter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils copying xfel/merging/application/utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils copying xfel/merging/application/utils/memory_usage.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/postrefinement_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/postrefinement_rs2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output copying xfel/merging/application/output/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output copying xfel/merging/application/output/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/file_load_calculator.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/file_loader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/file_lister.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/error_modifier_sr.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/error_modifier_ha14.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/error_modifier_ev11.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata copying xfel/merging/application/tdata/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata copying xfel/merging/application/tdata/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata copying xfel/merging/application/tdata/cell_listing.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus copying xfel/merging/application/lunus/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus copying xfel/merging/application/lunus/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus copying xfel/merging/application/lunus/lunus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_refine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/error_modeler_base.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_propagate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/errors_from_residuals.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/reduced_chi_squared.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_refine_levmar.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics copying xfel/merging/algorithms/statistics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine copying xfel/merging/algorithms/postrefine/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine creating /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale copying xfel/metrology/legacy_scale/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/xes_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/histogram_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_ledge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/rayonix_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/average_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_param.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_illumination_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_pulnix_dump.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_view.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_dump_bitmap.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/xes_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_hitfind.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/pixel_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_xes.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_mar.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/hitfinder_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_dump.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_radial_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_image_dict.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/display_calib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/cspad_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_hdf5.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_event_code.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_spectrum_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_event_info.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/common_mode.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/parse_calib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_daq_status.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/xes_faster_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line copying xfel/cxi/command_line/einsle.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line copying xfel/cxi/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/status_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/trials_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/wx_detectors.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/test_cluster.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/Cluster.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/SingleFrame.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering creating /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/xfel_small_cell_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/small_cell_index.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/powder_from_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/cake_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/small_cell_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/cake_plot_prep.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/candidate_cells.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector copying xfel/cftbx/detector/metrology2phil.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector copying xfel/cftbx/detector/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector copying xfel/cftbx/detector/cspad_cbf_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector creating /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_per_frame_wilson.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_unit_cell.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_visualise_orientations.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_42.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_intensity_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line creating /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/dump.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/double_overflow.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/divide_by_zero.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/inexact.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_platform_info.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_environ_usage.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/int_overflow.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/gcd.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/lcm.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/segmentation_fault.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/std_pair.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/optional.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/tuple.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/rational.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/python.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/connected_component_algorithm.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/clustering_algorithm.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/utility.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/min_cut_max_flow.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/maximum_clique.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/minimum_cut_enumerate.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/metric.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/graph_structure_comparison.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/breadth_first_search.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph creating /<>/.pybuild/cpython3_3.12/build/prime creating /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster copying prime/isoform_cluster/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster copying prime/isoform_cluster/mod_isoform_cluster.py -> /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster creating /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/comparestats.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/spot_param_visualizer.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/ray_trace.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/r_mtz_mtz.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/view_fineslices.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/iotacc.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/explore_twin_operators.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/postrefine.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/cluster_isoform.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/mpi_run.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/print_integration_pickle.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/frame_extractor_by_scan.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/compare_solution_pickles.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/change_basis.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/mpi_scale.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/plot_energy_spectrum.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/prime_gui.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/solve_indexing_ambiguity.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/run.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/change_path_indexing_ambiguity.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/plotstats.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/viewstats.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line creating /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/mod_kmeans.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/mod_indexing_ambiguity.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/mod_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity creating /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_util.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_gui_frames.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_plotter.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/postrefine.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_input.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_outlier.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_partiality.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_gui_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_pdb.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_mx.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_merge_data.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_run.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_misc.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_perf.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_results.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_leastsqr.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_threads.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_lbfgs_partiality.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine creating /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos copying simtbx/kokkos/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos copying simtbx/kokkos/tst_kokkos_lib.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos creating /<>/.pybuild/cpython3_3.12/build/simtbx/pixel copying simtbx/pixel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/pixel creating /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/tst_gpu_multisource_background.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/tst_shoeboxes.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/tst_exafel_api.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu creating /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_basic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_input.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_init.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_threads.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_minimal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_beam.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/anisotropic_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_crystal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_frames.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gauss_argchk.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_multisource_background.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/sim_data.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg creating /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/predictions.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/FormatHDF5AttributeGeometry.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/forward_models.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling creating /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/attr_list.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/hopper_ensemble_utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/device.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/phil.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/mpi_logger.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/hopper_io.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/parameter_errors.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/prep_stage2_input.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/ensemble_refine_launcher.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/psf.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/hopper_utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/stage_two_utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg creating /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/parameters.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/stage_two_refiner.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/base_refiner.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners creating /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/manager.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems creating /<>/.pybuild/cpython3_3.12/build/crys3d creating /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_websocket.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_hklinfo.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tests_HKLviewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression creating /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/compare_datasets.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/visualize_r_factors.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/model_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/qttbx.view_structure.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/make_install_HKLviewer_ChimeraX.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/hklview.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/HKLinfo.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/HKLviewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/multiplicity_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line creating /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx copying crys3d/qttbx/xray_structure_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx copying crys3d/qttbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx copying crys3d/qttbx/map_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx creating /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/hklview_frame.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/webbrowser_messenger_py2.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/xtricorder_runner.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/cmdlineframes.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/helpers.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/webbrowser_messenger_py3.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/display2.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/default_user_preset_buttons.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/xtriage_runner.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/hklviewer_gui.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/preset_buttons.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/qt.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/jsview_3d.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/HKLviewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/qt_chromium_check.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer creating /<>/.pybuild/cpython3_3.12/build/crys3d/programs copying crys3d/programs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/programs copying crys3d/programs/HKLinfo.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/programs creating /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/frames.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/view_2d.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/comparison.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/view_3d.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview creating /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src copying crys3d/hklviewer/chimeraX_wheel_src/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src copying crys3d/hklviewer/chimeraX_wheel_src/tool.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src creating /<>/.pybuild/cpython3_3.12/build/smtbx/regression copying smtbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression copying smtbx/regression/tst_commandline_anomrefine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression copying smtbx/regression/tst_commandline_refine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression creating /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/absolute_structure.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/benchmark_refinement.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/refine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/masks.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/anom_refine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors copying smtbx/structure_factors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors creating /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators copying smtbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators copying smtbx/source_generators/flex_fwd_h.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure copying smtbx/absolute_structure/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement copying smtbx/refinement/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement copying smtbx/refinement/least_squares.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement copying smtbx/refinement/weighting_schemes.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement creating /<>/.pybuild/cpython3_3.12/build/smtbx/array_family copying smtbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/array_family creating /<>/.pybuild/cpython3_3.12/build/smtbx/stl copying smtbx/stl/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/stl copying smtbx/stl/map.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/stl creating /<>/.pybuild/cpython3_3.12/build/smtbx/masks copying smtbx/masks/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/masks creating /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio copying smtbx/ab_initio/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio copying smtbx/ab_initio/charge_flipping.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio creating /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data copying smtbx/regression/test_data/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data creating /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct copying smtbx/structure_factors/direct/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/fpfdp.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/site.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/rigid.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/occupancy.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/adp.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/all.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints copying smtbx/refinement/restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints copying smtbx/refinement/restraints/origin_fixing_restraints.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints copying smtbx/refinement/restraints/adp_restraints.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_disorder.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_direction.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_occupancies.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_constrained_structure.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_same_group.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_reparametrisation.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_rigid.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/all.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical creating /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_charge_flipping.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_ab_initio_ext.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests creating /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/mtz_convert_free_to_work.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/recalculate_phenix_refine_r_factors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/direct_methods_light.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_split_chains.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_to_map_simple.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/tst_mtz_free_flipper.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_symmetry_copies.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_tardy_conf_sampling_simple.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/libtbx_phil_examples.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdbx_mmcif_tutorial.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_shake.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/prepare_model_for_rsr.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/mtz_free_flipper.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples creating /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_sort_atoms.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mmcif_segids.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_box_around_molecule.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_phases.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_extract_xtal_data.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_simple_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_3.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdbx_mmcif_tutorial.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_split_data_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_file_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_3.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_copy_select.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_show_systematic_absences.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_occupancies_rounding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_cif_1.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_split_models.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_tools.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_cif_as_pdb_1atom.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_link_records.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mmcif_to_from_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_4.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_simple_map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_bioinformatics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_atom_selections_10k.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_cli_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mmcif_multimodel.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_group_rounding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_fetch.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_selected_hierarchy_flip.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_as_fasta.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_manager_wrapping.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mtz_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_patterson.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_1.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_pdb_v3.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_export_scalepack_unmerged.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_add_conformations.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_data_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_miller_sort_asu.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_file_editor.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_merging_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_wildcard.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_generate_n_char_string.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_crystal_symmetry_from_any.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_call_consistency.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_cif_inputs.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_poscar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_4.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reindex.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_id_str.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_data_plots.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_all_chain_ids.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_restraints_merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_examples.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_csv_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_xray_scale.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression creating /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/hklf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_lex_parse_build.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/write_ins.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/fcf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/writer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tokens.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/fvar_encoding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/parsers.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/errors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/lexer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/crystal_symmetry_from_ins.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_hklf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_fvar_encoding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_writer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx creating /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof copying iotbx/fullprof/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof copying iotbx/fullprof/write_pcr.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof copying iotbx/fullprof/read_pcr.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof creating /<>/.pybuild/cpython3_3.12/build/iotbx/solve copying iotbx/solve/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/solve copying iotbx/solve/fpfm_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/solve copying iotbx/solve/crystal_symmetry_from_inp.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/solve creating /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/simple_map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/get_pubmed_citation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif_as_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns.reflection_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif.validate.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_as_fasta.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/xplor.map.show_summary.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/patterson_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_file_editor.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/merging_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cbf_read.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif.as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/flip_symmetric_amino_acids.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/show_distances.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.b_factor_stats.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/r_free_flags_completion_simple.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/shelx.dump_as_python.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/blast_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_add_conformations.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.join_fragment_files.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/mtz.dump.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_get_citation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_file_converter.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/sort_atoms.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/dano_as_amplitudes.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/show_systematic_absences.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns.transfer_crystal_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/mtrix_reconstruction.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns.sdb_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_split_models.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.print_sequence.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/distance_least_squares.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/split_data_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/r_free_flags_as_cns.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/effective_resolution.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_labels_comparison.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/detector_image_as_png.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.insert_scale_records.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/export_scalepack_unmerged.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reindex.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.box_around_molecule.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/explore_metric_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif.as_miller_arrays.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_remediator.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/r_free_flags_accumulation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/shelx.as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/shelx.as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/emma.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/biomt_reconstruction.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_labels_diff.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/symmetry_search.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/french_wilson.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/mtz_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/build_phil_cache.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/unique_with_biomt.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/isomorphous_difference_patterson.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.superpose_atoms_by_name.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/poscar_as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/csv_as_mtz.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns_as_mtz.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_show_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/crystal_symmetry_from_any.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.superpose_centers_of_mass.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/dtrek.to_cns.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line creating /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/ext.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/crystal_symmetry_from_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/tst_xplormap.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor creating /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/crystal_symmetry_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/space_group_symbols.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/crystal_symmetry_from_sdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/sdb_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/index_fobs_sigma_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/tst_cns.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/reflection_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/pdb_remarks.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/crystal_symmetry_from_inp.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/miller_array.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/sdb_writer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns creating /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/model.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/restraint.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/ncs_spec.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/sequence.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/miller_array.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/common.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/real_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager creating /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/crystal_symmetry_from_ref.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/dtrek_symmetry_dict.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/reflnlist_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek creating /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint copying iotbx/PrettyPrint/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint copying iotbx/PrettyPrint/tables.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint creating /<>/.pybuild/cpython3_3.12/build/iotbx/ncs copying iotbx/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ncs creating /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/reflections.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/models.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/cif_conversions.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/import_data_and_flags.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools creating /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile copying iotbx/mrcfile/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile copying iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile creating /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/atom_name_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/pdbe.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/web_service_api.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/aa_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_atom_name_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_rna_dna_atom_names.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/crystal_symmetry_from_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/modified_rna_dna_names.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_secondary_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/misc_records_output.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy_atom_sort.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/cryst1_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_tls.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/extract_rfactors_resolutions_sigma.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/rna_dna_detection.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/remark_2_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/fetch.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/experiment_type.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/records.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/pdb_v3_cif_conversion.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/hybrid_36.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_mmcif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/modified_aa_names.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/secondary_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/amino_acid_codes.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/mmcif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_secondary_structure_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/remark_3_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_read_mtrix_records_from_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/nucleic_acid_codes.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_atom_selection_string.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/rcsb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/download.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/remark_290_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb creating /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map copying iotbx/ccp4_map/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map copying iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map copying iotbx/ccp4_map/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map creating /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/ncbi_blast_xml.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/homologues.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/ebi_wu_blast_xml.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/pubmed.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/xmlbuild.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/local_blast.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/pdb_info.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/alignment_as_hsearch.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics creating /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_debug_write.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/noir.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/eiger.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/test_mar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/marIP.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/adsc.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/eiger_minicbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/generic_detector.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/dtrek.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/active_area_filter.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/bruker.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/adsc_module.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_cbf_comp_read_meth.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/edf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_py_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/adsc_minicbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/mar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/beam_center_convention.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_adsc.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/detectorbase.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/cspad_detector_formats.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_detectors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/raxisbase.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/test_raxis2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/pilatus_slice.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/pilatus_minicbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/macscience.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/saturn.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/raxis.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/raxis_nonsquare.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/url_support.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/npy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/hamamatsu.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/image_from_http_request.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors creating /<>/.pybuild/cpython3_3.12/build/iotbx/kriber copying iotbx/kriber/strudat.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/kriber copying iotbx/kriber/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/kriber copying iotbx/kriber/tst_strudat.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/kriber creating /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/box_around_molecule.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/split_data_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/unique_with_biomt.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs creating /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_extract_from_symmetry_lib.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/crystal_symmetry_from_mtz.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_unmerged.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_miller_dict.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_dano.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/extract_from_symmetry_lib.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz creating /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6 copying iotbx/dsn6/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6 copying iotbx/dsn6/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6 creating /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/geometry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/blank_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/integrate_hkl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/read_ascii.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/xparm.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/gain_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/crystal_symmetry_from_hkl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/xds_inp.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/xds_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/correction.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/spot_xds.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds creating /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/geometry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/builders.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/model.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/citations.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/cod_tools.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/restraint_file_merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/validation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/restraints.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/errors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/crystal_symmetry_from_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif creating /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/space_group_dictionary.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/no_merge_original_index.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/tst_no_merge_original_index.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/tst_merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/crystal_symmetry_from_hkl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack creating /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_user_selections.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_without_validation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_reordered_chains.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_ligs.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs creating /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation copying iotbx/pdb/remediation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation copying iotbx/pdb/remediation/remediator.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation copying iotbx/pdb/remediation/tst_remediator.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation creating /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/camera_convention.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/endstation_max_iv_trial.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/config_detector.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/endstation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/spot_xy_convention.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context creating /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util copying iotbx/detectors/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util copying iotbx/detectors/util/filters.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util # build the dxtbx python module dh_auto_build --sourcedirectory=dxtbx pybuild --build -i python{version} -p 3.12 --dir dxtbx I: pybuild base:311: /usr/bin/python3 setup.py build Found 20 dxtbx dispatchers Found 134 Format classes running build running build_py creating /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/ext.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/flumpy.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/imageset.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/version.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/datablock.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/filecache.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/filecache_controller.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/sequence_filenames.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx creating /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/SmarGonShadowMask.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking creating /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/image_average.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/print_matching_images.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/show_registry.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/debug_memory.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/plot_detector_models.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/overload.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/radial_average.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/image2pickle.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/detector_superpose.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/install_format.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/print_header.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/dlsnxs2cbf.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/display_parallax_correction.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/saturation.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/show_matching_formats.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/read_sequence.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/depends_on.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/show_mask_info.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/crystal.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/profile.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan_helpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector_helpers_types.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/compare.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/experiment_list.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/beam.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/goniometer.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector_helpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model creating /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/imageset.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/xds.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/filename.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/load.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize creating /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCNoDateStamp.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMultiImageLazy.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerChessID7B2.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSNAPSID19.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatGatanDM4.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatROD.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI51.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPY.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatBrukerPhoton.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPilatusHelpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatBruker.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5Lambda.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN926.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturn.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMini.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5PAL.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCmlfsom.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmx.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatRAXISII.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniADSCHF4M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBF.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMV.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTC.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusXXX.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/image.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS12M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/Format.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN928.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN442.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPYmultitile.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCJungfrau.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5EigerNearlyNexus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMRC.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN905.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuEiger.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMultiTile.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/nexus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5SaclaRayonix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCDBG.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatEDFALS733.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerPetraP14.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFCspad.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLSI19_2.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusHelpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigaku.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuA200.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatBrukerFixedChi.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMultiTileHierarchy.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatRAXIS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI7d.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLS16MI03.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatRAXISIVSpring8.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN457.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN915.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/cbf_writer.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatStill.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonixESRF.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVHamamatsu.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN445.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFHelpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI71.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVCMOS1.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatDIP2030b.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMarIP.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI61.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI32.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexusJungfrauHack.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVJHSim.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCEpix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPYunspecified.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullByteOffset.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonixSPring8.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexusJungfrauExt.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonixXPP.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxED.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI41.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuPilatus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexusTimepix2M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXDS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/Registry.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPYunspecifiedStill.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFF.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5SaclaMPCCD.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxEigerFilewriter.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCMultipleDetectors.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCRayonix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/nxmx_writer.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5Sacla.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI31.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFull.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSC.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFBruker.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVTimePix_SU.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSER.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMultiImage.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN920.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVNOIR.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnNoTS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEiger.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLS16M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCCspad.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format creating /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus copying src/dxtbx/nexus/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus creating /<>/.pybuild/cpython3_3.12/build/dxtbx/util copying src/dxtbx/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/util copying src/dxtbx/util/dlsnxs2cbf.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/util copying src/dxtbx/util/rotate_and_average.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/util creating /<>/.pybuild/cpython3_3.12/build/dxtbx/data copying src/dxtbx/data/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data creating /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/data/beamline_defs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/dxtbx_format_nexus_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_model_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/py.typed -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_format_image_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/imageset.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_masking_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_imageset_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/CMakeLists.txt -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/error.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_flumpy.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx creating /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family copying src/dxtbx/array_family/ref_pickle_double_buffered.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family copying src/dxtbx/array_family/flex_table_suite.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family copying src/dxtbx/array_family/flex_table.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family creating /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/compression.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/flumpy.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/ext.cpp -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/imageset_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/compression.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python creating /<>/.pybuild/cpython3_3.12/build/dxtbx/example copying src/dxtbx/example/to_xds.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/example copying src/dxtbx/example/resolution_corners.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/example copying src/dxtbx/masking/goniometer_shadow_masking.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/SConscript -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/masking.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking creating /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python copying src/dxtbx/masking/boost_python/ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python copying src/dxtbx/model/model_helpers.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/experiment_list.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/kappa_goniometer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/beam.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/virtual_panel.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/crystal.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/multi_axis_goniometer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/panel_data.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/spectrum.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan_helpers.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/pixel_to_millimeter.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/parallax_correction.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/ray_intersection.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/panel.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/goniometer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/experiment.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model creating /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/spectrum.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/crystal.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/goniometer.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/detector.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/experiment_list.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/pickle_suite.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/scan_helpers.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/model_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/parallax_correction.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/pixel_to_millimeter.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/beam.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/panel.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/scan.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/kappa_goniometer.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/to_from_dict.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/experiment.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/multi_axis_goniometer.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/format/README.md -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/image.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format creating /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/cbf_read_buffer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/image_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/cbf_read_buffer.cpp -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/nexus_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/data/detectors.lib -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data # build the cctbx extensions and libraries dh_auto_build -- -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 4 " pybuild --build -i python{version} -p 3.12 -s custom "--build-args=cd {build_dir}_ && ./bin/libtbx.scons -j 4 " I: pybuild base:311: cd '/<>/.pybuild/cpython3_3.12/build'_ && ./bin/libtbx.scons -j 4 scons: Reading SConscript files ... /<>/libtbx/SConscript:1401: SyntaxWarning: invalid escape sequence '\.' cuda_version = re.findall('release [0-9]+\.*[0-9]+', line) libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=3 LDFLAGS = -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python312 BOOST_NUMPY_LIB_VERSION: boost_numpy312 BOOST_VERSION: 108300 Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/<>/annlib_adaptbx/src -Iannlib_adaptbx/include -I/<>/annlib_adaptbx/include /<>/annlib_adaptbx/ann/ann_adaptor.cpp g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/usr/include/python3.12 -Iannlib_adaptbx/ann/boost_python/src -I/<>/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/<>/annlib_adaptbx/ann/boost_python/include /<>/annlib_adaptbx/ann/boost_python/annlib_ext.cpp g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/blobs_cmd.cpp g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/asymmetric_map.cpp g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/skeletons.cpp g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/dijkstra.cpp g++ -o iotbx/xplor/map_reader.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/iotbx/xplor/map_reader.cpp g++ -o iotbx/xplor/map_writer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/iotbx/xplor/map_writer.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/cut.cpp g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp g++ -o cctbx/eltbx/basic.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/basic.cpp g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/xray_scattering/it1992.cpp g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/xray_scattering/wk1995.cpp g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/xray_scattering/n_gaussian.cpp g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/fp_fdp.cpp g++ -o cctbx/eltbx/henke.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include cctbx/eltbx/henke.cpp g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include cctbx/eltbx/henke_tables_01_12.cpp g++ -o cctbx/eltbx/henke_tables_13_24.o -c 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-ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include cctbx/eltbx/henke_tables_25_36.cpp g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong 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-fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/tr_vec.cpp g++ -o cctbx/sgtbx/utils.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/utils.cpp g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/wyckoff.cpp g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/reference_settings/normalizer.cpp g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/reference_settings/wyckoff.cpp g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/uctbx/uctbx.cpp g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/uctbx/spoil_optimization.cpp g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/uctbx/crystal_orientation.cpp g++ -o omptbx/stubs.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> /<>/omptbx/stubs.cpp g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/breadth_first_search_ext.cpp g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/clustering_algorithm_ext.cpp g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/connected_component_algorithm_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lm In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/graph_ext.cpp Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/graph_structure_comparison_ext.cpp g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/maximum_clique_ext.cpp Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/metric_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/min_cut_max_flow_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/utility_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/hybrid_times_ext.cpp g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/meta_ext.cpp g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/optional_ext.cpp g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/rational_ext.cpp g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/std_pair_ext.cpp g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/boost_adaptbx/tests/boost_thread_test.cpp g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/tests/python_streambuf_test_ext.cpp g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> /<>/boost_adaptbx/tests/tst_optional_copy.cpp g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/tuple_ext.cpp g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/boost_adaptbx/tests/python_streambuf_test_ext.cpp:2: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 /<>/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/buffer_based_service.cpp g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/cbf_adaptor.cpp g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/mar_adaptor.cpp g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DCBF_NO_REGEX -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/hdf5/serial /<>/cbflib_adaptbx/detectors/tst_memory.cpp g++ -o ccp4io_adaptbx/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/ccp4io -I/usr/include -I/usr/include/python3.12 /<>/ccp4io_adaptbx/ext.cpp gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/<> -I/usr/include -I/usr/include/ccp4 -I/<>/ccp4io -I. -I/<> /<>/ccp4io_adaptbx/fortran_call_stubs.c gcc -o ccp4io_adaptbx/printf_wrappers.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/<> -I/usr/include -I/usr/include/ccp4 -I/<>/ccp4io -I. -I/<> /<>/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/sys_abs_equiv_space_groups.cpp g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry/boost_python/geometry_ext.cpp g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/angle_bpl.cpp g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/bond_bpl.cpp g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/angle.h:6, from /<>/cctbx/geometry_restraints/angle_bpl.cpp:13: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/angle_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/cctbx/geometry_restraints/bond_misc.h:4, from /<>/cctbx/geometry_restraints/bond_bpl.cpp:14: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/bond_bpl.cpp:10: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/bond_similarity.h:6, from /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/geometry_restraints/bond_similarity.h: In constructor ‘cctbx::geometry_restraints::bond_similarity::bond_similarity(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /<>/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i>/cctbx/geometry_restraints/bond_similarity.h: In constructor ‘cctbx::geometry_restraints::bond_similarity::bond_similarity(const cctbx::uctbx::unit_cell&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /<>/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/bond_sorted_bpl.cpp /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /<>/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /<>/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct vec3 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::vec3 >(scitbx::vec3*, unsigned long, scitbx::vec3 const&)scitbx::vec3* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/cctbx/geometry_restraints/bond_sorted.h:4, from /<>/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /<>/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ /<>/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ /<>/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here /<>/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym>/cctbx/crystal/direct_space_asu.h:869:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/chirality_bpl.cpp g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/dihedral_bpl.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/chirality.h:5, from /<>/cctbx/geometry_restraints/chirality_bpl.cpp:13: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/chirality_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/dihedral.h:6, from /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:12: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/geometry_restraints/dihedral_bpl.cpp:13: /<>/cctbx/geometry_restraints/proxy_select.h: In instantiation of ‘scitbx::af::shared cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here /<>/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/geometry_restraints_ext.cpp g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/motif_bpl.cpp g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/nonbonded.h:4, from /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/nonbonded.h:4, from /<>/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /<>/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/crystal/neighbors_fast.h:5, from /<>/cctbx/crystal/pair_tables.h:4, from /<>/cctbx/geometry_restraints/nonbonded_sorted.h:5: /<>/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /<>/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ /<>/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here /<>/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/parallelity_bpl.cpp In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/parallelity_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/planarity_bpl.cpp g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/asymmetric_map_ext.cpp In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/planarity_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/bcr/bcr_ext.cpp g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/coordinate_transformers.cpp g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/grid_tags.cpp g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/gridding.cpp g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/maptbx_ext.cpp g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/misc.cpp g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/peak_search.cpp g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/pymol_interface.cpp g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/statistics.cpp g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/structure_factors.cpp g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/masks/boost_python/masks_ext.cpp g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/math/boost_python/math_ext.cpp g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/math/time_trigonometry.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_array.hpp:17, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/math/cos_sin_table.h:6, from /<>/cctbx/math/time_trigonometry.cpp:1: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lm g++ -o cctbx/merging/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/merging/ext.cpp g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/miller/boost_python/amplitude_normalisation.cpp g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer 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cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/uctbx/boost_python/uctbx_ext.cpp g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DHAVE_SINGLEFILE_NCDIST -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/uctbx/determine_unit_cell/ext.cpp g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/conversions.cpp g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/curvatures_simple.cpp g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/curvatures_simple.h:4, from /<>/cctbx/xray/boost_python/curvatures_simple.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/gradients_direct.h:4, from /<>/cctbx/xray/each_hkl_gradients_direct.h:4, from /<>/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/extinction.cpp In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/f_model_bpl.cpp g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/fast_gradients.cpp g++ -o cctbx/xray/boost_python/gradient_flags.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/gradient_flags.cpp g++ -o cctbx/xray/boost_python/gradients_direct.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/gradients_direct.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/sampling_base.h:4, from /<>/cctbx/xray/fast_gradients.h:4, from /<>/cctbx/xray/boost_python/fast_gradients.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/cctbx/miller/match_indices.h:4, from /<>/cctbx/miller/lookup_utils.h:11, from /<>/cctbx/xray/f_model.h:11, from /<>/cctbx/xray/boost_python/f_model_bpl.cpp:3: /<>/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /<>/scitbx/error_utils.h:4, from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/cctbx/xray/f_model.h:4: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/gradients_direct.h:4, from /<>/cctbx/xray/boost_python/gradients_direct.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /<>/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here /<>/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/f_model.h:732:10: note: in expansion of macro ‘CCTBX_ASSERT’ 732 | CCTBX_ASSERT( iselection[ii]>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/grouped_data.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/grouped_data.cpp In file included from /<>/cctbx/miller/match_indices.h:4, from /<>/cctbx/miller/lookup_utils.h:11, from /<>/cctbx/xray/grouped_data.h:14, from /<>/cctbx/xray/boost_python/grouped_data.cpp:3: /<>/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /<>/scitbx/error_utils.h:4, from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/cctbx/xray/grouped_data.h:4: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /<>/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here /<>/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii>/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::r_abs() [with FloatType = double]’: /<>/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here /<>/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii>/cctbx/xray/grouped_data.h: In instantiation of ‘std::vector cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /<>/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ /<>/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here /<>/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii>/cctbx/xray/grouped_data.h:231:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii>/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::unmerged_data::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here /<>/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii>/cctbx/xray/grouped_data.h:61:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii>/cctbx/xray/grouped_data.h:67:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here /<>/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii>/cctbx/xray/grouped_data.h:167:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/minimization.cpp g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/parameter_map.cpp g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/sampled_model_density.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/minimization.h:4, from /<>/cctbx/xray/boost_python/minimization.cpp:8: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/boost_python/parameter_map.cpp:10: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/sampling_base.h:4, from /<>/cctbx/xray/sampled_model_density.h:6, from /<>/cctbx/xray/boost_python/sampled_model_density.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/xray/boost_python/parameter_map.cpp:9: /<>/cctbx/xray/parameter_map.h: In instantiation of ‘void cctbx::xray::parameter_map::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /<>/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ /<>/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here /<>/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sampling_base.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/sampling_base.cpp In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/scatterer.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/sampling_base.h:4, from /<>/cctbx/xray/boost_python/sampling_base.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/scatterer_flags.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scatterer_utils.h:4, from /<>/cctbx/xray/boost_python/scatterer.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /<>/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here /<>/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /<>/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /<>/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here /<>/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/boost_python/scatterer_flags.cpp:7: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/sgtbx/tensor_rank_2.h:9, from /<>/cctbx/sgtbx/site_symmetry.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/scattering_type_registry.cpp g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/sigmaa.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/boost_python/scattering_type_registry.cpp: At global scope: /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:49:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/sigmaa.h:4, from /<>/cctbx/xray/boost_python/sigmaa.cpp:8: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/structure_factors_direct.cpp g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/structure_factors_simple.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/structure_factors_direct.h:4, from /<>/cctbx/xray/boost_python/structure_factors_direct.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/structure_factors_simple.h:12, from /<>/cctbx/xray/boost_python/structure_factors_simple.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/targets.cpp In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/twin_components.cpp g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/twin_targets.cpp g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/xray_ext.cpp g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/xray/observations/boost_python/observations.cpp In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/stl/vector_wrapper.h:4, from /<>/cctbx/xray/boost_python/twin_components.cpp:6: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ /<>/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ /<>/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/cctbx/miller/match_indices.h:4, from /<>/cctbx/miller/lookup_utils.h:11, from /<>/cctbx/xray/twin_targets.h:14, from /<>/cctbx/xray/boost_python/twin_targets.cpp:3: /<>/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /<>/scitbx/error_utils.h:4, from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/cctbx/xray/twin_targets.h:4: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here /<>/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here /<>/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here /<>/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here /<>/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here /<>/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here /<>/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here /<>/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here /<>/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii>/cctbx/xray/twin_targets.h:10: /<>/scitbx/math/quadrature.h: In instantiation of ‘FloatType scitbx::math::quadrature::gauss_legendre_engine::refine(const FloatType&) [with FloatType = double]’: /<>/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ /<>/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here /<>/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/xray/observations/boost_python/observations_ext.cpp g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from /<>/cctbx/xray/targets/shelxl_wght_ls.hpp:1, from /<>/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp:23: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o chiltbx/handle_test.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> /<>/chiltbx/handle_test.cpp g++ -o chiltbx/handle_test -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread chiltbx/handle_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o cma_es/cma/cmaes.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/cma_es/cma/cmaes.cpp g++ -o cma_es/cma_es_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/cma_es/cma_es_ext.cpp g++ -o dxtbx/src/dxtbx/boost_python/compression.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/compression.cc /<>/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /<>/dxtbx/src/dxtbx/boost_python/compression.cc:123:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY6_decompress(int*, const char*, const char*, int, int)’: /<>/dxtbx/src/dxtbx/boost_python/compression.cc:203:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 203 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:224:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 224 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:250:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 250 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:257:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 257 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 278 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/ext.cpp g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /<>/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:184:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 184 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:184:5: note: in expansion of macro ‘DXTBX_ASSERT’ 184 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:219:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:220:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 220 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp In file included from /<>/dxtbx/src/dxtbx/imageset.h:24, from /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/imageset.h:25: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/imageset.h:27: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc In file included from /<>/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /<>/dxtbx/src/dxtbx/imageset.h:30: /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /<>/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /<>/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /<>/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /<>/dxtbx/src/dxtbx/imageset.h:647:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 647 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /<>/dxtbx/src/dxtbx/imageset.h:1115:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1115 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: At global scope: /<>/dxtbx/src/dxtbx/imageset.h:1062:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1062 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1202:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1202 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /<>/dxtbx/src/dxtbx/imageset.h:1138:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1138 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /<>/dxtbx/src/dxtbx/imageset.h:1138:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1138 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /<>/dxtbx/src/dxtbx/imageset.h:1152:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1152 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /<>/dxtbx/src/dxtbx/imageset.h:1152:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1152 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: At global scope: /<>/dxtbx/src/dxtbx/imageset.h:1062:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1062 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1473:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1473 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /<>/dxtbx/src/dxtbx/imageset.h:1237:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1237 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /<>/dxtbx/src/dxtbx/imageset.h:1276:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1276 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /<>/dxtbx/src/dxtbx/imageset.h:1398:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1398 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1414:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1414 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1414:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1414 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /<>/dxtbx/src/dxtbx/imageset.h:468:56: required from here /<>/dxtbx/src/dxtbx/imageset.h:501:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 501 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /<>/dxtbx/src/dxtbx/imageset.h:470:55: required from here /<>/dxtbx/src/dxtbx/imageset.h:501:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /<>/dxtbx/src/dxtbx/imageset.h:472:53: required from here /<>/dxtbx/src/dxtbx/imageset.h:501:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:249:56: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:253:56: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:257:58: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:261:52: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/masking/boost_python/ext.cc In file included from /<>/dxtbx/src/dxtbx/masking/masking.h:16, from /<>/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/masking/masking.h:17: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /<>/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /<>/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc In file included from /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/beam.h:17: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/experiment.cc In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:22: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:18: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:9: note: in expansion of macro ‘DXTBX_ASSERT’ 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:100:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 100 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:124:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 124 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:134:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 134 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:158:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 158 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:168:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 168 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:228:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 228 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/experiment.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/experiment.h:23: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/experiment.h:25: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/experiment.h:19: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc In file included from /<>/dxtbx/src/dxtbx/model/experiment.h:22, from /<>/dxtbx/src/dxtbx/model/experiment_list.h:23, from /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/experiment.h:23: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/experiment.h:25: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/experiment_list.h:20: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/model_ext.cc In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/goniometer.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/goniometer.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc:20: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc:18: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec2.h:4, from /<>/dxtbx/src/dxtbx/model/scan.h:17: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:62:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 62 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:191:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/spectrum.cc g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lboost_thread -lboost_system -lhdf5 -lcbf Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lcbf -lcbf-private -lm -lhdf5 g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/dxtbx/src/dxtbx/model/spectrum.h:9, from /<>/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o fable/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<>/fable -I/<> -I/usr/include -I/usr/include/python3.12 /<>/fable/ext.cpp g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/font_ucs_10x20.cpp g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/font_ucs_8x13.cpp g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/font_ucs_9x15.cpp g++ -o gltbx/fonts_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/fonts_ext.cpp g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_00_bpl.cpp In file included from /<>/fable/ext.cpp:5: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/utils/string_to_double.hpp:5, from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/ext.cpp:6: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string.hpp:6, from /<>/fable/fem/str_ref.hpp:5, from /<>/fable/fem/format.hpp:5, from /<>/fable/ext.cpp:4: /<>/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /<>/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /<>/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /<>/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /<>/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_01_bpl.cpp g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_02_bpl.cpp g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_03_bpl.cpp g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_04_bpl.cpp g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_05_bpl.cpp g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_06_bpl.cpp g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_07_bpl.cpp g++ -o gltbx/gl_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/gl_ext.cpp g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_00_bpl.cpp g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_01_bpl.cpp g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_02_bpl.cpp g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_03_bpl.cpp g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_04_bpl.cpp g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_05_bpl.cpp g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_06_bpl.cpp g++ -o gltbx/gl_functions_07_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_07_bpl.cpp g++ -o gltbx/gl_functions_08_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_08_bpl.cpp g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_09_bpl.cpp g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_10_bpl.cpp g++ -o gltbx/gl_functions_11_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_11_bpl.cpp g++ -o gltbx/gl_functions_12_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/glu_ext.cpp g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/glu_functions_00_bpl.cpp g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/glu_functions_01_bpl.cpp g++ -o gltbx/glu_functions_02_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/glu_functions_02_bpl.cpp g++ -o gltbx/glu_functions_03_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/glu_functions_03_bpl.cpp g++ -o gltbx/quadrics_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/quadrics_ext.cpp g++ -o gltbx/util_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/util_ext.cpp g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/viewer_utils_ext.cpp g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/ccp4_map/ext.cpp /<>/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /<>/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /<>/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /<>/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /<>/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /<>/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /<>/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /<>/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /<>/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /<>/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /<>/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /<>/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/cif/boost_python/cif_ext.cpp g++ -o iotbx/detectors/bruker.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/bruker.cpp g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/bruker_ext.cpp g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/detectors_ext.cpp g++ -o iotbx/detectors/image_divider.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/image_divider.cpp g++ -o iotbx/dsn6/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/dsn6/ext.cpp g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/misc/boost_python/dtrek_ext.cpp g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/misc/boost_python/scalepack_ext.cpp g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/batch_bpl.cpp g++ -o iotbx/mtz/column.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/column.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/column.h:4, from /<>/iotbx/mtz/column.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/column_bpl.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/batch_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/batch_bpl.cpp:78:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /<>/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/crystal.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/crystal.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/crystal.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/column.h:4, from /<>/iotbx/mtz/column_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/column_bpl.cpp:76:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/crystal_bpl.cpp g++ -o iotbx/mtz/dataset.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/dataset.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/dataset.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/dataset_bpl.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/crystal_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/crystal_bpl.cpp:42:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/ext.cpp g++ -o iotbx/mtz/object.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/object.cpp g++ -o iotbx/mtz/object_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/object_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx/hendrickson_lattman.h:4, from /<>/cctbx/miller/sym_equiv.h:4, from /<>/cctbx/miller/asu.h:4, from /<>/iotbx/mtz/object.cpp:5: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/dataset_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/dataset_bpl.cpp:43:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /<>/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl>/iotbx/mtz/object.cpp: In member function ‘scitbx::af::shared iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /<>/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i>/iotbx/mtz/object.cpp: In member function ‘scitbx::af::shared iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /<>/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/object_bpl.cpp:9: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/pdb/atom_selection.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/atom_selection.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/atom_selection.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/common_residue_names_bpl.cpp g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/construct_hierarchy.cpp g++ -o iotbx/pdb/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/ext.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/construct_hierarchy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy.cpp g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hierarchy_atom_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy_atoms.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp:242:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 242 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /<>/iotbx/pdb/hierarchy_atoms.cpp:248:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 248 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /<>/iotbx/pdb/hierarchy_atoms.cpp:257:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 257 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /<>/iotbx/pdb/hierarchy_atoms.cpp:261:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 261 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hierarchy_ext.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/iotbx/pdb/hierarchy_ext.cpp:11: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/function/function_base.hpp:28, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy_select.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_select.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy_write.cpp g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hybrid_36_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_write.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hybrid_36_c.c g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hybrid_36_cpp.cpp g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/<>/fable iotbx/pdb/hybrid_36_fem.cpp In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/input.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/input.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/input.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/misc/file_utils.h:4, from /<>/iotbx/pdb/input.cpp:3: /<>/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /<>/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /<>/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/input_bpl.cpp g++ -o iotbx/pdb/input_write.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/input_write.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/input_write.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/overall_counts.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/overall_counts.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/rna_dna_atom_names_bpl.cpp /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/utils.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/utils.cpp g++ -o iotbx/pdb/write_utils.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/write_utils.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/write_utils.h:5, from /<>/iotbx/pdb/write_utils.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /<>/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/xray_structure_bpl.cpp g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 -I/<>/fable /<>/iotbx/shelx/shelx_ext.cpp g++ -o iotbx/wildcard_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/iotbx/wildcard_ext.cpp g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/xplor/boost_python/xplor_ext.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/iotbx/pdb/xray_structure.h:6, from /<>/iotbx/pdb/xray_structure_bpl.cpp:7: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o lib/libann_adaptor.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libann_adaptor.so.0 annlib_adaptbx/ann/ann_adaptor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lcbf-private -lcbf -lboost_thread -lboost_system -lboost_python312 -lm -lhdf5 Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm -lccp4c Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o lib/ccp4io_adaptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=ccp4io_adaptbx_ext.so.0 ccp4io_adaptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lccp4io -lccp4c -lssm -lmmdb2 -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o scitbx/boost_python/utils.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/boost_python/utils.cpp Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/boost_python/slice.cpp Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/utils.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/boost_python/utils.h:5, from /<>/scitbx/array_family/boost_python/utils.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so.0'->'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so'->'lib/ccp4io_adaptbx_ext.so.0.0.1' g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lhdf5 g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lboost_thread -lboost_system -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lboost_thread -lboost_system -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lboost_thread -lboost_system -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lccp4c -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' g++ -o ucif/cifParser.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/ucif/cifParser.cpp Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o ucif/cifLexer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/ucif/cifLexer.cpp g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm -lantlr3c Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread -lboost_system Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/dxtbx_toolbox/libdistl.cpp Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/dxtbx_toolbox/distl.cpp g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/spot.cpp Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/libdistl.cpp g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/hough.cpp g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/distl.cpp g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/spotfilter.cpp g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/masks/atom_mask.cpp g++ -o mmtbx/tls/decompose.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/decompose.cpp Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/dps_core/dps_core.cpp g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lomptbx -lm g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lm g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/dps_core/directional_fft.cpp Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o rstbx/dps_core/direction.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/dps_core/direction.cpp g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/indexing_api/indexing_api.cpp g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/diffraction/ewald_sphere.cpp Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/diffraction/partial_spot_position_partial_H.cpp g++ -o scitbx/minpack/raw.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/minpack/raw.cpp gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> /<>/scitbx/slatec/lib_c.c g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lcctbx -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/affine.cpp g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/geometrical_hydrogens.cpp Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/occupancy.cpp g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/reparametrisation.cpp g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/rigid.cpp Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/same_group.cpp g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/scaled_adp.cpp g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/shared.cpp g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/special_position.cpp g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/symmetry_equivalent.cpp g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include /<>/mmtbx/alignment/alignment_ext.cpp g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/building/loop_closure/ccd_bpl.cpp g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/bulk_solvent/bulk_solvent_ext.cpp g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/bulk_solvent/bulk_solvent.cpp g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o mmtbx/cablam/boost_python/cablam_align_utils_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/cablam/boost_python/cablam_align_utils_ext.cpp g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/den/boost_python/den_ext.cpp Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/secondary_structure/dssp_ext.cpp In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/mmtbx/den/den.h:2, from /<>/mmtbx/den/boost_python/den_ext.cpp:12: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/sgtbx/tensor_rank_2.h:9, from /<>/cctbx/sgtbx/site_symmetry.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_cablam_align_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_cablam_align_utils_ext.so.0 mmtbx/cablam/boost_python/cablam_align_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_cablam_align_utils_ext.so.0.0.1' 'lib/mmtbx_cablam_align_utils_ext.so.0'->'lib/mmtbx_cablam_align_utils_ext.so.0.0.1' 'lib/mmtbx_cablam_align_utils_ext.so'->'lib/mmtbx_cablam_align_utils_ext.so.0.0.1' g++ -o mmtbx/dynamics/dynamics_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/dynamics/dynamics_ext.cpp g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/dynamics/dynamics.cpp g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/f_model/f_model_ext.cpp g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/asa_ext.cpp Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/clash_ext.cpp Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/indexing_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/object_manager.hpp:8, from /usr/include/boost/python/extract.hpp:10, from /<>/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/primitive_ext.cpp g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/shared_types_ext.cpp Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/hydrogens/hydrogens_ext.cpp Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/masks/masks_ext.cpp g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/max_lik/max_lik_ext.cpp g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/max_lik/max_lik.cpp Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/bulk_solvent/mosaic_ext.cpp g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/ncs/cartesian_restraints_ext.cpp g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/ncs/tncs_ext.cpp g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/pair_interaction/interaction_ext.cpp Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/boost_python/probe_bpl.cpp Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/Scoring.cpp g++ -o lib/mmtbx_ncs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_ext.so.0 mmtbx/ncs/tncs_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/DotSpheres.cpp g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/SpatialQuery.cpp g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o ranlib probe/lib/libprobelib.a g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/boost_python/reduce_bpl.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/dihedral.h:6, from /<>/mmtbx/geometry_restraints/ramachandran.h:10, from /<>/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/mmtbx/geometry_restraints/ramachandran.h: In instantiation of ‘scitbx::af::tiny mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /<>/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here /<>/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i>/mmtbx/geometry_restraints/ramachandran.h:284:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /<>/cctbx/geometry_restraints/dihedral.h:8: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/reduce/PositionReturn.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/PositionReturn.cpp g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -Lprobe/lib -L/<>/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/InteractionGraph.cpp Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/Optimizers.cpp g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/rotamer/fit_ext.cpp In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/mmtbx/geometry_restraints/reference_coordinate.h:2, from /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:14: /<>/cctbx/geometry_restraints/proxy_select.h: In instantiation of ‘scitbx::af::shared cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here /<>/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/sgtbx/tensor_rank_2.h:9, from /<>/cctbx/sgtbx/site_symmetry.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/rsr/rsr_ext.cpp g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/scaling_ext.cpp g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -Lreduce/lib -L/<>/reduce/lib -Lprobe/lib -L/<>/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/twinning_bpl.cpp g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/relative_scaling_bpl.cpp Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/outlier_bpl.cpp g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/secondary_structure/ext.cpp g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/decompose_ext.cpp g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/tls_ext.cpp g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/optimise_amplitudes.cpp g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/optimise_amplitudes_ext.cpp g++ -o mmtbx/tls/utils.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/utils.cpp g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/utils_ext.cpp Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/utils/utils_ext.cpp g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/validation/ramachandran/rama_eval_bpl.cpp g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' g++ -o omptbx/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/omptbx/ext.cpp g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' g++ -o rstbx/array_family/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/array_family/ext.cpp g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/array_family/flex_rstbx_arrays.cpp g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lomptbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/bandpass/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/bandpass/src -I/<>/rstbx/bandpass/src -Irstbx/bandpass/include -I/<>/rstbx/bandpass/include /<>/rstbx/bandpass/ext.cpp g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/bpcx/src -I/<>/rstbx/bpcx/src -Irstbx/bpcx/include -I/<>/rstbx/bpcx/include /<>/rstbx/bpcx/detector_model/detector_model_ext.cpp In file included from /<>/rstbx/bandpass/ext.cpp:10: /<>/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /<>/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/rstbx/bandpass/parameters.h:3: /<>/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /<>/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /<>/rstbx/bandpass/ext.cpp:11: /<>/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /<>/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /<>/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /<>/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /<>/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /<>/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /<>/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /<>/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /<>/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /<>/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /<>/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /<>/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /<>/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /<>/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /<>/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /<>/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /<>/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /<>/rstbx/bandpass/ext.cpp:616:87: required from here /<>/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /<>/rstbx/bandpass/ext.cpp:620:78: required from here /<>/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/bpcx/src -I/<>/rstbx/bpcx/src -Irstbx/bpcx/include -I/<>/rstbx/bpcx/include /<>/rstbx/bpcx/detector_model/sensor.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec2.h:4, from /<>/rstbx/bpcx/detector_model/sensor.h:3, from /<>/rstbx/bpcx/detector_model/sensor.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /<>/rstbx/bandpass/ext.cpp:4: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct vec3 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::vec3 >(scitbx::vec3*, unsigned long, scitbx::vec3 const&)scitbx::vec3* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/<>/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/<>/rstbx/diffraction/fastbragg/include /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp g++ -o lib/mmtbx_tls_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_utils_ext.so.0 mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm In file included from /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/rstbx/diffraction/fastbragg/fastbragg.h:8: /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm /<>/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here /<>/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here /<>/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] Create symlinks for: 'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so.0'->'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/<>/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/<>/rstbx/diffraction/fastbragg/include /<>/rstbx/diffraction/fastbragg/fastbragg.cpp Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' g++ -o rstbx/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/ext.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/rstbx/diffraction/fastbragg/fastbragg.h:8, from /<>/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4: /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o rstbx/indexing_api/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/indexing_api/src -I/<>/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/<>/rstbx/indexing_api/include /<>/rstbx/indexing_api/ext.cpp In file included from /<>/scitbx/fftpack/real_to_complex.h:4, from /<>/rstbx/dps_core/directional_fft.h:5, from /<>/rstbx/dps_core/dps_core.h:11, from /<>/rstbx/indexing_api/indexing_api.h:9, from /<>/rstbx/indexing_api/ext.cpp:4: /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/rstbx/indexing_api/indexing_api.h:11: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' g++ -o rstbx/apps/integration_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/apps/src -I/<>/rstbx/apps/src -Irstbx/apps/include -I/<>/rstbx/apps/include /<>/rstbx/apps/integration_ext.cpp g++ -o lib/rstbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_array_family_flex_ext.so.0 rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm In file included from /<>/spotfinder/core_toolbox/libdistl.h:81, from /<>/spotfinder/core_toolbox/distl.h:14, from /<>/rstbx/apps/stills/simple_integration.h:9, from /<>/rstbx/apps/integration_ext.cpp:3: /<>/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /<>/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ /<>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /<>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::null_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:320:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p>/rstbx/apps/stills/simple_integration.h: In member function ‘scitbx::af::shared > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort>/rstbx/apps/stills/simple_integration.h:378:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort>/rstbx/apps/stills/simple_integration.h:395:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:495:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort>/rstbx/apps/stills/simple_integration.h:550:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::integration_proper_fast(const scitbx::af::flex_int&, scitbx::af::shared >, scitbx::af::shared >, scitbx::af::shared >)’: /<>/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:631:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k>/rstbx/apps/stills/simple_integration.h:638:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o rstbx/simage/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/simage/src -I/<>/rstbx/simage/src -Irstbx/simage/include -I/<>/rstbx/simage/include /<>/rstbx/simage/ext.cpp Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/simulation/src -I/<>/rstbx/simulation/src -Irstbx/simulation/include -I/<>/rstbx/simulation/include /<>/rstbx/simulation/ext.cpp In file included from /<>/rstbx/simage/ext.cpp:2: /<>/rstbx/simage/image_simple.hpp: In member function ‘rstbx::simage::image_simple& rstbx::simage::image_simple::compute(const cctbx::uctbx::unit_cell&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /<>/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /<>/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /<>/rstbx/simage/image_simple.hpp:10: /<>/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /<>/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ In file included from /<>/rstbx/simulation/ext.cpp:11: /<>/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /<>/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /<>/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /<>/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount>/rstbx/simulation/sim_xfel1.h:230:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /<>/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm In file included from /<>/scitbx/array_family/shared_plain.h:307, from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7, from /<>/rstbx/simulation/sim_xfel1.h:4: /<>/scitbx/array_family/detail/push_back_etc.h: In member function ‘scitbx::af::shared_plain >::resize(unsigned long const&)’: /<>/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct vec3 &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::vec3 const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h: In member function ‘scitbx::af::shared_plain::resize(unsigned long const&)’: /<>/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct crystal_orientation &’ to ‘scitbx::af::shared_plain::resize(unsigned long const&, cctbx::crystal_orientation const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so.0'->'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/symmetry/constraints/src -I/<>/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/<>/rstbx/symmetry/constraints/include /<>/rstbx/symmetry/constraints/ext.cpp Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_ext.cpp g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm /<>/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /<>/scitbx/array_family/boost_python/flex_ext.cpp:367:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 367 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_ext.cpp:375:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 375 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_ext.cpp:383:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 383 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_grid.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/selections.h:4, from /<>/scitbx/array_family/boost_python/flex_ext.cpp:2: /<>/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_ext.cpp:544:7: required from here /<>/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /<>/scitbx/array_family/boost_python/flex_ext.cpp:10: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:84:46: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:85:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:86:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:90:37: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:91:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_bool.cpp /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:96:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:100:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:101:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:102:55: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:105:58: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:106:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:110:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:112:46: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:115:49: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:117:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:122:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:127:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:128:52: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:129:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:131:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:132:63: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:133:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:134:49: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:135:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:136:52: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:137:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:139:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:141:49: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:143:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:146:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:153:64: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:154:56: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:156:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_bool.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so.0'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_size_t.cpp /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /<>/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /<>/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_size_t.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_int.cpp In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_int.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = signed char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = signed char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_float.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_float.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_double.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_double.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /<>/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /<>/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i>/scitbx/array_family/boost_python/flex_double.cpp:454:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/boost_python/flex_double.cpp:7: /<>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here /<>/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /<>/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp In file included from /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /<>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here /<>/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i>/scitbx/matrix/norms.h:16:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_inf(const scitbx::af::const_ref >&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here /<>/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i>/scitbx/matrix/norms.h:34:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int j=0; j>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_frobenius(const scitbx::af::const_ref >&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here /<>/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_complex_double.cpp g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_std_string.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/array_family/boost_python/flex_std_string.cpp:3: /<>/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /<>/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /<>/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /<>/scitbx/array_family/boost_python/flex_std_string.cpp:1: /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_random.cpp g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_sort.cpp g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_weighted_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_mean_and_variance.cpp g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_median.cpp g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_linear_interpolation.cpp In file included from /<>/scitbx/array_family/boost_python/flex_median.cpp:2: /<>/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ /<>/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ /<>/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here /<>/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i>/scitbx/array_family/boost_python/flex_vec2_double.cpp:129:28: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 129 | for(std::size_t j=0;j>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct vec3 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::vec3 >(scitbx::vec3*, unsigned long, scitbx::vec3 const&)scitbx::vec3* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘scitbx::af::versa_plain, scitbx::af::flex_grid > >::resize(scitbx::af::flex_grid > const&)’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct vec3 &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::vec3 const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct vec2 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::vec2 >(scitbx::vec2*, unsigned long, scitbx::vec2 const&)scitbx::vec2* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct vec3 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::vec3 >(scitbx::vec3*, unsigned long, scitbx::vec3 const&)scitbx::vec3* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct sym_mat3 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::sym_mat3 >(scitbx::sym_mat3*, unsigned long, scitbx::sym_mat3 const&)scitbx::sym_mat3* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘scitbx::af::versa_plain, scitbx::af::flex_grid > >::resize(scitbx::af::flex_grid > const&)’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct vec2 &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::vec2 const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘scitbx::af::versa_plain, scitbx::af::flex_grid > >::resize(scitbx::af::flex_grid > const&)’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct vec3 &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::vec3 const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘scitbx::af::versa_plain, scitbx::af::flex_grid > >::resize(scitbx::af::flex_grid > const&)’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct sym_mat3 &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::sym_mat3 const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/loops.cpp g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/show_sizes.cpp In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:3: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include /<>/scitbx/array_family/boost_python/numpy_bridge.cpp In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct mat3 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::mat3 >(scitbx::mat3*, unsigned long, scitbx::mat3 const&)scitbx::mat3* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/shared_ext.cpp /<>/scitbx/array_family/versa_plain.h: In member function ‘scitbx::af::versa_plain, scitbx::af::flex_grid > >::resize(scitbx::af::flex_grid > const&)’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct mat3 &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::mat3 const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct tiny &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::af::tiny >(scitbx::af::tiny*, unsigned long, scitbx::af::tiny const&)scitbx::af::tiny* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/error.h:16, from /<>/scitbx/array_family/versa_plain.h:4, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:4: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘scitbx::af::versa_plain, scitbx::af::flex_grid > >::resize(scitbx::af::flex_grid > const&)’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct tiny &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::af::tiny const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/scitbx/array_family/boost_python/shared_ext.cpp:3: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/cubicle_neighbors_ext.cpp g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/fftpack/boost_python/fftpack_ext.cpp g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm -lboost_numpy312 In file included from /<>/scitbx/fftpack/gridding.h:5, from /<>/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/cubicle_neighbors_ext.cpp:3: /<>/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /<>/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here /<>/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /<>/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /<>/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /<>/scitbx/cubicle_neighbors.hpp:4: /<>/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /<>/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here /<>/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/glmtbx/boost_python/ext.cc g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/graphics_utils/ext.cpp g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm -lboost_numpy312 g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/iso_surface/iso_surface_ext.cpp Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/lbfgs/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/scitbx/lbfgs/ext.cpp g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/fable scitbx/lbfgs/lbfgs_fem.cpp In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/linalg_ext.cpp g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/matrix.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb.h:8, from /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>/scitbx/lbfgsb.h: In instantiation of ‘scitbx::lbfgsb::minimizer::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here /<>/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/cholesky.cpp g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/householder.cpp g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/svd.cpp g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/eigensystem.cpp g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/lstbx/boost_python/lstbx_ext.cpp g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/lstbx/boost_python/normal_equations.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/math_ext.cpp g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/basic_statistics.cpp Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/gaussian.cpp g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/golay.cpp g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/minimum_covering_sphere.cpp g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/principal_axes_of_inertia.cpp g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/row_echelon.cpp Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/tensor_rank_2.cpp g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/chebyshev.cpp g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/icosahedron.cpp g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/slatec.cpp g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/line_search.cpp g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/r3_rotation.cpp g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/resample.cpp g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/quadrature.cpp g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/unimodular_generator.cpp g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/halton.cpp g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/least_squares_plane.cpp g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/continued_fraction.cpp g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/numeric_limits.cpp g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/distributions.cpp g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/exp_functions.cpp g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/zernike.cpp g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/zernike_moments.cpp g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/2d_zernike_moments.cpp g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/weighted_covariance.cpp g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/rotation.cpp g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/interpolation.cpp g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/tetrahedron.cpp g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/angle_derivative.cpp g++ -o scitbx/minpack/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/minpack/ext.cpp g++ -o scitbx/r3_utils_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/r3_utils_ext.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/minpack/raw.h:4, from /<>/scitbx/minpack/levenberg_marquardt.h:4, from /<>/scitbx/minpack/ext.cpp:4: /<>/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /<>/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/random/boost_python/random_ext.cpp g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/random/boost_python/basic_distributions.cpp Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/rigid_body/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/rigid_body/ext.cpp Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/vector.cpp In file included from /<>/scitbx/array_family/tiny_plain.h:6, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/rotr3.h:4, from /<>/scitbx/rigid_body/spatial_lib.h:4, from /<>/scitbx/rigid_body/featherstone.h:4, from /<>/scitbx/rigid_body/tardy.h:6, from /<>/scitbx/rigid_body/ext.cpp:14: /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /<>/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ /<>/scitbx/rigid_body/ext.cpp:24:49: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/versa_matrix.h:6, from /<>/scitbx/rigid_body/spatial_lib.h:5: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /<>/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ /<>/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ /<>/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ /<>/scitbx/rigid_body/ext.cpp:120:46: required from here /<>/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /<>/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ /<>/scitbx/rigid_body/ext.cpp:151:13: required from here /<>/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /<>/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:643:5: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /<>/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ /<>/scitbx/rigid_body/joint_lib.h:271:5: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /<>/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:313:5: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /<>/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ /<>/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:313:5: required from here /<>/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/versa_matrix.h:4: /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/scitbx/boost_python/array_as_list.h:4, from /<>/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct vec3 &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::vec3 >(scitbx::vec3*, unsigned long, scitbx::vec3 const&)scitbx::vec3* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::shared_plain >::shared_plain(unsigned long const&)’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const struct tiny &’ to ‘std::uninitialized_fill_n*, unsigned long, scitbx::af::tiny >(scitbx::af::tiny*, unsigned long, scitbx::af::tiny const&)scitbx::af::tiny* [clone .isra.0]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h: In member function ‘scitbx::af::shared_plain >::resize(unsigned long const&)’: /<>/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct tiny &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::af::tiny const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/matrix.cpp Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/approx_equal.cpp g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/random.cpp g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/lu_factorization.cpp g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/sparse_ext.cpp g++ -o scitbx/stl/map_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/stl/map_ext.cpp g++ -o scitbx/stl/set_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/stl/set_ext.cpp g++ -o scitbx/stl/vector_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/stl/vector_ext.cpp g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm In file included from /<>/scitbx/stl/set_ext.cpp:1: /<>/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /<>/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/stl/set_wrapper.h:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ /<>/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/set_ext.cpp:9:32: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ /<>/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/set_ext.cpp:10:35: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/stl/vector_wrapper.h:4, from /<>/scitbx/stl/vector_ext.cpp:2: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/vector_ext.cpp:10:35: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/vector_ext.cpp:11:33: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/vector_ext.cpp:14:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/suffixtree/boost_python/object_extensions.cpp g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o scitbx/wigner/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/wigner/ext.cpp Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/ab_initio/ab_initio_ext.cpp Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/array_family/af_ext.cpp g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/affine.cpp g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/constraints_ext.cpp Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/direction.cpp g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/occupancy.cpp Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/reparametrisation.cpp g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/rigid.cpp g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/same_group.cpp g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/scaled_adp.cpp g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/shared.cpp g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/special_position.cpp g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/boost_python/least_squares_ext.cpp g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/boost_python/weighting_schemes.cpp g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/boost_python/least_squares.cpp g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/restraints/boost_python/origin_fixing.cpp g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/restraints/boost_python/restraints_ext.cpp g++ -o smtbx/stl/map_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/stl/map_ext.cpp Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/structure_factors/direct/boost_python/ext.cpp g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/structure_factors/direct/boost_python/standard_xray.cpp g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/array_family/src -I/<>/spotfinder/array_family/src -Ispotfinder/array_family/include -I/<>/spotfinder/array_family/include /<>/spotfinder/array_family/flex_ext.cpp g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/array_family/src -I/<>/spotfinder/array_family/src -Ispotfinder/array_family/include -I/<>/spotfinder/array_family/include /<>/spotfinder/array_family/flex_distl_spot.cpp Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/core_toolbox/boost_python/src -I/<>/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/<>/spotfinder/core_toolbox/boost_python/include /<>/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so.0'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/core_toolbox/boost_python/src -I/<>/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/<>/spotfinder/core_toolbox/boost_python/include /<>/spotfinder/diffraction/geometry.cpp g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/dxtbx_toolbox/src -I/<>/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/<>/spotfinder/dxtbx_toolbox/include /<>/spotfinder/dxtbx_toolbox/ext.cpp g++ -o lib/spotfinder_distltbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_distltbx_ext.so.0 spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/core_toolbox/boost_python/src -I/<>/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/<>/spotfinder/core_toolbox/boost_python/include /<>/spotfinder/core_toolbox/boost_python/hough_ext.cpp Create symlinks for: 'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so.0'->'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/masks/tst_mask.cpp g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/regression_test_ext.cpp g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_accessors.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/tst_accessors.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/tst_accessors.cpp:15: /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /<>/scitbx/array_family/tst_accessors.cpp:127:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /<>/scitbx/array_family/tst_accessors.cpp:145:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /<>/scitbx/array_family/tst_accessors.cpp:172:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /<>/scitbx/array_family/tst_accessors.cpp:202:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:248:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:280:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:326:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:371:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_1.cpp In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/list.hpp:10, from /<>/scitbx/boost_python/container_conversions.h:4, from /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:7: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /<>/scitbx/array_family/tst_af_1.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:619:52: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ /<>/scitbx/array_family/tst_af_1.cpp:621:46: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::shared_plain]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:624:48: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_2.cpp /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::shared]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ /<>/scitbx/array_family/tst_af_1.cpp:629:42: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /<>/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ /<>/scitbx/array_family/tst_af_1.cpp:635:64: required from here /<>/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /<>/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ /<>/scitbx/array_family/tst_af_1.cpp:637:58: required from here /<>/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/small_plain_apply.h:15, from /<>/scitbx/array_family/tst_af_1.cpp:3: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /<>/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:619:52: required from here /<>/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/tst_af_2.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_3.cpp g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_4.cpp g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm -lboost_numpy312 In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_3.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_4.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_5.cpp Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_mat3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_5.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_optional_copy.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/array_family/tst_mat3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/tst_optional_copy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_5.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_rectangular_full_packed.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/accessors/rectangular_full_packed.h:3, from /<>/scitbx/array_family/tst_rectangular_full_packed.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_ref_matrix_facet.cpp /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /<>/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i>/scitbx/array_family/tst_rectangular_full_packed.cpp:53:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 53 | for(int j=0; j>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_sym_mat3.cpp g++ -o scitbx/array_family/tst_rectangular_full_packed -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_rectangular_full_packed.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tst_ref_matrix_facet.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_unsigned_float_arithmetic.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/scitbx/array_family/tst_sym_mat3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/tiny_algebra.h:14, from /<>/scitbx/array_family/tst_unsigned_float_arithmetic.cpp:3: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_ref_matrix_facet.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_vec3.cpp g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_sym_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/error/tst_error.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/error -I/<>/scitbx/error /<>/scitbx/error/tst_error.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/array_family/tst_vec3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/error/tst_error -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/fftpack/timing/fftpack_timer.cpp g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/fftpack/timing/test0.cpp g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/tiny_types.h:4, from /<>/scitbx/fftpack/factorization.h:4, from /<>/scitbx/fftpack/complex_to_complex.h:4, from /<>/scitbx/fftpack/timing/fftpack_timer.cpp:6: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/tiny_types.h:4, from /<>/scitbx/fftpack/factorization.h:4, from /<>/scitbx/fftpack/complex_to_complex.h:4, from /<>/scitbx/fftpack/complex_to_complex_3d.h:4, from /<>/scitbx/fftpack/timing/test0.cpp:3: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/fable scitbx/lbfgs/sdrive_fem.cpp In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lomptbx -lm g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lomptbx -lm g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgs/tst_lbfgs.cpp g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgsb/dev/driver1.cpp g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgsb/dev/driver2.cpp g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/tst_lbfgs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver1.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver2.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgsb/dev/driver3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver3.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/math/tests/tst.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/math/tests -I/<>/scitbx/math/tests /<>/scitbx/math/tests/tst.cpp g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_cholesky.cpp g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_givens.cpp g++ -o scitbx/math/tests/tst -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_householder.cpp g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_svd.cpp g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/serialization -I/<>/scitbx/serialization /<>/scitbx/serialization/tst_base_256.cpp g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/sparse/tests -I/<>/scitbx/sparse/tests /<>/scitbx/sparse/tests/tst_sparse.cpp g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_special_position.cpp g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/aarch64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system scons: done building targets. usr+sys time: 141.53 seconds wall clock time: 125 minutes 9.87 seconds (7509.87 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h # cp all extensions into the python build directory # special case for an extension used during test dh_auto_build -- -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" pybuild --build -i python{version} -p 3.12 -s custom "--build-args=cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" I: pybuild base:311: cp -f '/<>/.pybuild/cpython3_3.12/build'_/lib/*_ext.so '/<>/.pybuild/cpython3_3.12/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/<>/.pybuild/cpython3_3.12/build' # cp the dxtbx pybind11 extension at the right place. dh_auto_build -- -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" pybuild --build -i python{version} -p 3.12 -s custom "--build-args=cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" I: pybuild base:311: cp -f '/<>/.pybuild/cpython3_3.12/build'_/lib/dxtbx_flumpy.so '/<>/.pybuild/cpython3_3.12/build' make[1]: Leaving directory '/<>' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>' # DOES NOT WORK, source code must be modified in order to find the expected # /usr/share/cctbx libtbx_env file during the build process make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars rm -fr -- debian/.debhelper/generated/libcctbx0/ debian/libcctbx0/ debian/tmp/ debian/.debhelper/generated/libcctbx-dev/ debian/libcctbx-dev/ debian/.debhelper/generated/python3-cctbx/ debian/python3-cctbx/ debian/rules override_dh_auto_install make[1]: Entering directory '/<>' # install the cctbx python modules dh_auto_install install -m0755 -d /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.12 --dest-dir /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root '/<>/debian/tmp' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.12 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_iso_surface_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/max_like.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/energy_scan_notch_finder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/construct_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/jungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/rayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/cspad_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/cspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/xtc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_nexus_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/flumpy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_model_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/goniometer_shadow_masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SConscript -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SmarGonShadowMask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python/ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/py.typed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_matching_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/debug_memory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/plot_detector_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/overload.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image2pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/detector_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/install_format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_header.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/display_parallax_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/saturation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_matching_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/read_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/depends_on.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_mask_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_image_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/datablock.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/model_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/kappa_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/virtual_panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/multi_axis_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel_data.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/spectrum.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/pixel_to_millimeter.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/parallax_correction.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/spectrum.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/crystal.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/detector.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment_list.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pickle_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan_helpers.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/model_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/parallax_correction.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pixel_to_millimeter.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/beam.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/panel.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/kappa_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/to_from_dict.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/multi_axis_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/ray_intersection.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/compare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_masking_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/filename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/load.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_imageset_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/to_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/resolution_corners.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache_controller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/sequence_filenames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/flumpy.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/ext.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/imageset_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCNoDateStamp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImageLazy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerChessID7B2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSNAPSID19.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatGatanDM4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatROD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI51.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPY.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerPhoton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Lambda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN926.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/README.md -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMini.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5PAL.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCmlfsom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISII.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniADSCHF4M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMV.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusXXX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS12M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN928.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN442.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYmultitile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCJungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMRC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN905.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCDBG.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatEDFALS733.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPetraP14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLSI19_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigaku.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerFixedChi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTileHierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXIS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI7d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16MI03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISIVSpring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN457.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN915.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/cbf_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixESRF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN445.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI71.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/image_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/nexus_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVCMOS1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatDIP2030b.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMarIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI61.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI32.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauHack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVJHSim.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCEpix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecified.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullByteOffset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauExt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixXPP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxED.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI41.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusTimepix2M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXDS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecifiedStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaMPCCD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCMultipleDetectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nxmx_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Sacla.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFull.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVTimePix_SU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSER.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN920.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVNOIR.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnNoTS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus copying /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/rotate_and_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/ref_pickle_double_buffered.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/CMakeLists.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/error.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/detectors.lib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_flumpy.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/cma_es_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_shared_types_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simage_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_wavelengths_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/tst_spherical_bessel_jn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/tst_direct_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reduce_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_pair_interaction_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/annlib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_wigner_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_fftpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_rational_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_asymmetric_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_sphere_surface_sampling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_metric_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/sweep_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/find_active_area.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/sphere_formulae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/close_spots_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/imagefiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/multipart_encoder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/adsc_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/pilatus_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_dials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_client_push.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/bcsb_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_is_alive.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/general_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/specific_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_bcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/method2_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice_nztt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/spotreporter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/stats_distl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_run3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/wrappers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/proq2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/invariant_domain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/make_fake_anomalous_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ligand_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_scattering_type_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cis_trans_peptide_link.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_maps_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_statistics_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_metal_link_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_isomorphous_difference_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_arrows_on_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_flipping_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_special_term_at_end.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_apply_cif_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_models_to_from_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_dedeuterate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_utils_merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_get_vdw_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_coeffs_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search_flips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_loop_closure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ss_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_no_cryst1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ml_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_h_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_schrodinger_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_dynamics_cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_command_line_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_alignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_ccs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_psi_phi_extraction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_refinement_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_get_t_scheme.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geo_min_restraints_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_chain_break.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_type_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sequence_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_probe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/skew_kurt_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/tst_hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/data_filtering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/rotamer_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/sample_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/all_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/find_ss_from_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/proteins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_segid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/secondary_structure_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/nucleic_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_insertion_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/pair_interaction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_05.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_max_lik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/max_like_non_uniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/tst_mmtbx_probe_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/Helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/AtomTypes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_sa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/ensemble_cd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/how_to.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/regular_helix_definitions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/parallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_fingerprints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/check_cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_svl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/sf4_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/histidines.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_base_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/altloc_weighting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hpdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/bond_angle_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/metal_coordination_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/testing_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/LinkedResidues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_hpdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/partial_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/anneal_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/distance_difference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sisa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reciprocal_space_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/monomer_library.comp_as_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_r_factors_by_shell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_suspicious_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/verify_mon_lib_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/apply_ncs_to_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/simulate_low_res_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_peaks_holes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development.aev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/estimate_bijvoet_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ssm_rmsd_for_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cdl_lookup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/super.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/f000.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer_score.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/search_pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fake_f_obs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_screen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compute_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_tls_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/kinemage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_model_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/r_factor_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_static_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compare_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/strip_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_residue_in_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_diff_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/get_related_ensemble.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maximum_entropy_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chains_as_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cif_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fetch_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_view_ad_hoc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mon_lib_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rama_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_rotarama_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/models_as_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_model_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_cablam_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/perigee.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_H_cl_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_polygon_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/kick.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/mtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_find_region_max_value.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_arguments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_keep_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/run_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_symmetry_SS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_do_flips_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/convert_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/convert_from_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_others_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ensembles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/fav_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbd_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_PRO_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comprehensive_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/kinemage_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/cif_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/external.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/base_qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/orca_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_restraints_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/c_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/mopac_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Movers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/InteractionGraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Optimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment copying /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/tncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/cartesian_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/find_peaks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/chemistry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_basics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/electrons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/hierarchy_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/rdkit_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip_tasks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_aniso_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/kbu_refinery.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/f_model_all_scales.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/plot_weights.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/print_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_occupancy_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/adp_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/orca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/wx_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/targets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_fit_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_real_space_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/inspect_tardy_trajectory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/flip_peptide_side_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/weights_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/energy_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/explode_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_small_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/individual_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/twin_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/probabalistic_detwinning.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/tst_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/shared_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/clash.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/asa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/altloc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/topology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/sphere_surface_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/rotatable_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/grid2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/tst_switch_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/ntc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_approx_zn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca_svm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/identify.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_symmetry_axis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/tst_classifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/dump_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/halides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/resolve_resources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitealyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/transdent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninput.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/diangle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/mainchain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/dualparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenamedefs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/berkeley_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/ccd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/starting_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/custom_gm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/lifi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/tst_ias.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm15.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm12.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/decompose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/ladp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_optimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_ga.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_superpose_ideal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/hydrogen_restrictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conv_v2_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_chg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_correct_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_all_cif_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_mixins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conformation_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_deuterium_terminii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_paral_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_neutron_distance.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_metal_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_protein_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/bondlength_defaults.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/correct_hydrogen_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_chiral_values.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_carbo_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_asu_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/find.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/parameterization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/riding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/build_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_minimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/reduce_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_scoring.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rolling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absolute_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pair_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage_twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/rip_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sir_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/random_omit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/thorough_outlier_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/siras_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pre_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/make_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_sigmaa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/data_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/basic_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absence_likelihood.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_rejection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twmad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/ta_alpha_beta_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sigmaa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/massage_twin_detwin_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/map_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ensemble_ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/nqh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval_deprecated.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/n_dim_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/sidechain_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_min_cut_max_flow_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_python_streambuf_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_single_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_utility_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_masking_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_rigid_body_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/tst_cma_es.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/cma_es_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/scitbx_minpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_observations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_cartesian_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_imageset_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/self_match.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/sample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_bcr_bcr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_orientation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_clash_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_building_loop_closure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_least_squares_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_viewer_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_connected_component_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_dtrek_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_hough_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_indexing_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_random_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_motion_on_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/quadrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_leapmotion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl_managed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/try_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_functions_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewers_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_cube.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_ellipsoids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_fonts_ucs_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_ellipsoids_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/extract_opengl_specs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/glu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_defines_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_scene.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/iotbx_ccp4_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/slip_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/example_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/ersatz_misset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/instrument_specifics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/tst_detector_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions_idx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/compare_mosflm_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2a.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/phil_preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/scope.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/tst_sublattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/drivers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/pixels3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_wrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/results_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/integration_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/slip_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/dual_resolution_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/simple_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/dials_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/stills_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/spot_markup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_ewald_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_predict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/do_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_dataset1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_auto_monoscan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_labelit_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_spotfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/integrate_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/refine_uc_cr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/tst_xfel1_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_pdf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/stats_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/spot_shape.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/speckfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/oscillation_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/pixel_spread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/fit_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/silicon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/force_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/nearest_neighbor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/test_dps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/subgroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/sgtbx_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/parameter_reduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/g_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/example_frame_plugin_hidden.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/uc_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/pyslip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/score_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/tile_generation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/ring_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_viewer_image_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/tst_coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/cell_assessment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/lepage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/zuoreduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/constrainment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/tst_iotbx_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/checklistctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/layout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/symmetry_dialog.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/listeditor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plot_anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/inspect_r_free_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/wxpython.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/show_file_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/anomalous_differences_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/loggraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/ensemble_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/icons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/wx4_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/metallicbutton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/windows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/path_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/qstat_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/misc_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/sequence_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/segmentedctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/ints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floatctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/intctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/text_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice_multi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/numbers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/array_label.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tribool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/space_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/symop.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/boolctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/misc_ctrls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/simple_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/bitmaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/adp_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/browser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/heavy_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon_db_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/info_panels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/process_control.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/mtz_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/custom_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_henke_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_r3_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/env_config.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/log.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/introspection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/configure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/python_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/start_print_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/statistics_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/metric_prefixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/mpi4py.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_csh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_build_libtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_runtime_sources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/try_hello_world_c.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_untested.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/path_utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/git_avoid_merges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bundle_as_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/py_compile_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_modules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_host_and_user.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/nequal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/easy_qsub.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_contains_strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remote_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/scons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/extract_code_from_txt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_source_files_sorted_by_size.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/wait_for_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_ends_with.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/chunk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clean_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_dist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/epydoc_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_old_style_classes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_unzipsfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/env_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_pickled_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_sphinx_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_pythonpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_tests_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_binary_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_but_no_repr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_install_script_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_available_slots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/check_libcpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_in_repositories.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_qstat_counts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_sys_executable.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remove_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_number_of_processors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/raise_exception_for_testing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_dist_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sphinx_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_date_and_time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/analyse_code_comments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_module_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/printenv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_commands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/ipython_shell_start.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_not_show_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_repository_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_reserved_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/add_from_future_import_division.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_include_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/seconds_since_the_epoch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/parallel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_bin_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numpy_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_variable_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_full_command_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/dtrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/any2unix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_all_on_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numeric_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/prime_factors_of.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_options.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_selfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_lib_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_under_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_multicore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/complex_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/crossmingw.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileClient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/StartServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileSocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/SocketServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/gui_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/callbacks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/find_reference_cycles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_fully_buffered_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_server_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/console_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/load_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/forward_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/simplexml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/objgraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_representation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/fastentrypoints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/looping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/polling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/transfer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/submission.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/sge_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/generic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/communication.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/pbs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/remote.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/code_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mainthread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/philgen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/file_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/socket_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/parallel_for.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/shared_resource.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/cluster_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/process_pool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/job_scheduler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mp_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/thread_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/stacktrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_state.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/pytest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/xcode_build_phase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/timers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/except_Exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/wingide.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/assert_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subprocess_with_fixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/smart_open.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clusterTests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/file_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cpp_function_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/progress.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/regenerate_module_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_pkg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_base_packages.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/installer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/setup_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/write_gui_dispatcher_include.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/plus_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/make_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/rpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/package_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyplot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pkg_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_symmetry_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/validation_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/hydrogens_button.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/view_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/xmlrpc_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/interactive_edit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/watch_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/ligand_checklist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/simple_zoom_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_fp_fdp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_chemical_elements_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_tuple_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_group_matrices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/convert_ccp4_symop_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_consistency_checks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/list_non_principal_continuous_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/adp_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/maximum_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/neutron_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/change_hand_p31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/fft_map_electron_density_around_atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_distances_using_cpp_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/sub_group_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/getting_started.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_levenberg_sparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_subset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/task4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_cc_half.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_utilities.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/tst_permutations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/show_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/sigma_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/location_part.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_f_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/view_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/steve_collins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_common_sets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/f_model_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_sys_abs_equiv_space_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/lebedev_2005_perturbation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/quartz_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/symops_530.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/hirshfeld_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_primitive_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/analyze_adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/reduced_cell_two_folds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/site_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/map_skewness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/read_custom_scattering_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/van_der_waals_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/icsd_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/attenuation_coefficient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/chemical_elements.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/sasaki.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/neutron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/e_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/henke.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/e_scattering_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_approx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_section61_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/combine_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_cross_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/rez_rez_grant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/hydrogen_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_kissel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/format_gaussian_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/formula.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/tiny_pse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/covalent_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sphericity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_refine_xray_curvs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_loc_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_double_step_filtration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_krivy_gruber.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_twin_target.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_triplet_generator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_amplitude_normalisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization_failure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_merge_equivalents.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_web_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_aniso_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wilson_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_tidy_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints_cartesian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_denominators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_expand_to_p1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity_allsym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_statistics_graphs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fcalc_fft_stability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grouped_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sf_low_res_accuracy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_site_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fast_nv1995.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_lookup_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pair_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_data_manipulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reciprocal_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_asu_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_fast_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_modifications.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_is_periodic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance copying /<>/.pybuild/cpython3_3.12/build/cctbx/covariance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/reduction_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973_table_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/krivy_gruber_1976.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/iotbx_cif_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/wyckoff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/replay.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/cgi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/libtbx_help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/frac_cart.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/io_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/multiple_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_setting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/explore_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/browse_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jvx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/web_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/guide_to_notation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/dispatcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/eltbx.show_fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cctbx_test_nightly.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/find_reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/xray_structure.show.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/precession_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/space_group_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/structure_factor_timings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/form_factor_query.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/translation_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/tst_observations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradient_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/global_counters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/scatterer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_shelxl_wght_ls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observation_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_map_to_asu_isym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/linking_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/standard_cif_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_angle_derivs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_proxy_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/base_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/auto_linking_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/dmtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/rational_matrices_point_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sys_abs_equiv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/literal_description.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_pg_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/bravais_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/short_cuts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/cut_plane.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sub_lattice_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/plane_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/symbol_confidence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/adptbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/eval_iso_vs_refined.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cif_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tardy_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/pdb_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/anharmonic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_henke_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron copying /<>/.pybuild/cpython3_3.12/build/cctbx/neutron/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/rotation_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/electron_density_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_epsilon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_hl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/github.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/direct_or_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/fmt_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/approx_amplitude_vs_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx76.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/cns_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/space_group_option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_cns_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/debug_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/structure_factor_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/random_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/multipolar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_loft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_target_and_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_ccp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_get_percentile_cutoffs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_scales_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_asymmetric_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_sharpening.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_peak_volume_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/map_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks copying /<>/.pybuild/cpython3_3.12/build/cctbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks copying /<>/.pybuild/cpython3_3.12/build/gltbx_fonts_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_maximum_clique_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tokenization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/fem_include_search_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/show_calls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/insert_write_at_start_of_each_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/split.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout_compile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/simple_compilation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/intrinsics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_max_lik_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bpcx_detector_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_set_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_quadrics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_bulk_solvent_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/qttbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/chimerax.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/cctbx_covariance_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_bruker_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/exercise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_12_script_compare_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_17_script_rfactors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_8_doc_maps_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_11_script_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_13_script_ideal_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_py_from_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_2_doc_hlo_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_9_doc_maps_boxing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_1_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/mmtbx_probe_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_french_wilson_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_array_family_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_xray_scattering_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_decompose_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_gl_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reference_coordinate_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/omptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/omptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/scitbx_sparse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_uctbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_den_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_ab_initio_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_linalg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_icsd_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_merging_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_adp_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_emma_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_validation_ramachandran_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_mtz_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_neutron_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rotamer_fit_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/minimizer_comparisons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/integrating_a_weighted_sinc_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_recipe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_array_loops.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/chebyshev_lsq_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/immoptibox_ports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_grid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_linear_least_squares_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/silver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/rigid_body_refinement_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/principal_axes_of_inertia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/r3_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/dicts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/graph_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/signal_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/robust_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_robust.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/test_problems.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/tst_normal_equations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns_solving.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/tst_wigner3j.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_2d_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_cubic_equation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_halton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_exp_functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_g_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_resample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_weighted_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_dmatrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_r3_rotation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_quadrature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_angle_derivative.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_orthonormal_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_uniform_rotation_matrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_tetrahedron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_bessel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_similarity_indices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_100_13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_multivariate_moments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/besselk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/lefebvre.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/multiple_superposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/incremental_SO3_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/spe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_240_21.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/chebyshev_lsq_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/zernike_align_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/cubic_spline.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sphere_sphere_intersection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_400.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/distributions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gumbel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/breakpoint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sieve_of_eratosthenes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike_mom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_bessel_zeros.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900_ylm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/farey.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/scale_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random copying /<>/.pybuild/cpython3_3.12/build/scitbx/random/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random copying /<>/.pybuild/cpython3_3.12/build/scitbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/genetic_algorithm_with_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/svd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/eigensystem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/householder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/bounds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/realsymmetricpseudoinverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/reparams.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/minimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/twisted_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/compulsory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/min_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/auxiliary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/refinebase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/single.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/test_cases_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree_find_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity_matrix_symbolic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_func_free_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_mpi_split_evaluator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_curvatures.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/regular_grid_on_unit_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cubicle_neighbors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_algebras.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_std_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/operator_functor_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_reductions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_apply.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/direct_search_simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/fftpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib copying /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib copying /<>/.pybuild/cpython3_3.12/build/scitbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/shared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion_hard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/free_motion_reference_impl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_simulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_singular.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_spherical_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/make_bundles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/wx_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/body_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_energy_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/spatial_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/tst_iso_surface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/smoothing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cross_entropy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse copying /<>/.pybuild/cpython3_3.12/build/scitbx/sparse/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse copying /<>/.pybuild/cpython3_3.12/build/scitbx/golden_section_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/row_echelon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/differential_evolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/minpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/simplex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/split_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/ui_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/get_hit_timestamps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_isoform_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/xfel_gui_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/print_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_reflection_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/run_stats_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/submission_tracker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/tooltips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/timeit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/phil_patch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dxtbx_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/frame_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/xfel_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/job.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/rungroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/tag.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/merging_log_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/task.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/shifter_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/test_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/fit_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_c2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_hit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_bg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/mono_treatment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/max_like_pos_neg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pyana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_apply_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_extractor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/list_db_metadata.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cbf_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_optical2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_psana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pbs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/print_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_calibdir2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_dials_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_generate_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_mpi_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/overlay_spectra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_json_to_cbf_def.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_bar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/stills_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/recompute_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_stream_to_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/plot_to_subpixel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cspad_pinwheel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/auto_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trial_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mar_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_detector_format_versions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/detector_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_slaccalib2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/beamcenter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/runs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/get_next_trial_id.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jobs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/find_highres_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/striping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xmerge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/or_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jungfrau_metrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/smooth_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_trials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/subtract_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/launch_fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xfel_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/FEE_average_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_unpickler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cctbx_integration_pickle_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trumpet_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cbfheader2slaccalib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/h5_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/riso.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/calc_gain_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_plotcv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/filter_experiments_by_rmsd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/upload_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pickle2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/mpi_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_display_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_cbf_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/view_pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/absorption.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/general_fcalc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/mpi_integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_fs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/predictions_to_edges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/experiment_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/merger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/experiment_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/reflection_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/worker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/token_passing_left_right.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_abc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/compare_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/aux_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/df_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym_tranch_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/polarization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_helper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/application.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/resolution_binner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/crystal_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/group_reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/beam_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/experiment_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/unit_cell_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/load_balancer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/data_counter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/memory_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_load_calculator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_loader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_lister.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/reflection_table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_sr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ha14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ev11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/cell_listing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/lunus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/phil_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/error_modeler_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/errors_from_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/reduced_chi_squared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/flatfile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/panel_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/quadrant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/read_geom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/write_composite_image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_from_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/psana_cctbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/exercise_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/cctbx_xfel_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/reflection_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/image_pickle_locator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/kapton_2019_correction_frame_frame_plugin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_pickle_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_file_matcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/split_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/jf4m_geom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/average_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_ledge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/rayonix_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/average_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_illumination_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_pulnix_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump_bitmap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hitfind.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_xes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/hitfinder_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_image_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/display_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/cspad_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hdf5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_code.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/common_mode.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/parse_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_daq_status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_faster_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_hybrid_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/spectra_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/einsle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/integrate_image_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/merging_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_legacy_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cxi_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/data_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/strong_zulu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/status_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/trials_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/wx_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/trumpet_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_updated_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_powder_arcs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/completeness_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/test_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/Cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/SingleFrame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/components.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/multiproc_temp_parame_opt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/parameter_optimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/xfel_small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/powder_from_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot_prep.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/candidate_cells.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/powder_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/small_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/solve_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/write_orientation_arrows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/sync_jf16m_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/jf16m_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/metrology2phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/cspad_cbf_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/simulate_partial_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/singleframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_per_frame_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_visualise_orientations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_42.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_intensity_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_symmetry_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_alignment_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_primitive_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_crystal_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dynamics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_adptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_breadth_first_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simulation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rsr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_optimise_amplitudes_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/exercise_compression.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dssp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_scaling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/omptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_miller_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_multipolar_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_anharmonic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_wildcard_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lstbx_normal_equations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_dsn6_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_glu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_attenuation_coefficient_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/std_pair_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_graphics_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_graph_structure_comparison_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_mosaic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_flumpy.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/regression_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_asa_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_python_meta_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/hybrid_times.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/double_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/divide_by_zero.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/inexact.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_platform_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/int_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/lcm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/segmentation_fault.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/std_pair.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/tuple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/rational.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/connected_component_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/clustering_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/min_cut_max_flow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/maximum_clique.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/minimum_cut_enumerate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/metric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/graph_structure_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/breadth_first_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_python_hybrid_times_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_distltbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_translation_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_shelx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/determine_unit_cell_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_structure_factors_direct_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_cablam_align_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_secondary_structure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_hierarchy_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_statistics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_vector_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgsb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_util_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_diffraction_fastbragg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_tiny_pse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_glmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_image_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_f_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/mod_isoform_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/comparestats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/spot_param_visualizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/ray_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/r_mtz_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/view_fineslices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/iotacc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/explore_twin_operators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/cluster_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/print_integration_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/frame_extractor_by_scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/compare_solution_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plot_energy_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/prime_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/solve_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_path_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plotstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/viewstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_kmeans.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_mx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_merge_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_perf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_leastsqr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_indexing_api_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_xplor_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx copying /<>/.pybuild/cpython3_3.12/build/simtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/tst_kokkos_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel copying /<>/.pybuild/cpython3_3.12/build/simtbx/pixel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel copying /<>/.pybuild/cpython3_3.12/build/simtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_gpu_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_shoeboxes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_exafel_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gauss_argchk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/sim_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/predictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/FormatHDF5AttributeGeometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/forward_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/stage_two_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/base_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/attr_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/device.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/parameter_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/prep_stage2_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/ensemble_refine_launcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/psf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/stage_two_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/cctbx_dmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_scalepack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_websocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_hklinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tests_HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/compare_datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/visualize_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/model_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/qttbx.view_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/make_install_HKLviewer_ChimeraX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/hklview.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/multiplicity_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/xray_structure_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/map_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklview_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtricorder_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/cmdlineframes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/display2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/default_user_preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtriage_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklviewer_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/jsview_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt_chromium_check.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_asu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bandpass_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_hydrogens_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_boost_thread_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/development.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_anomrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/conftest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/absolute_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/benchmark_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/anom_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure copying /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_direction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_same_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/fpfdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/site.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/origin_fixing_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/smtbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks copying /<>/.pybuild/cpython3_3.12/build/smtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ramachandran_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_cubicle_neighbors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cbflib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_convert_free_to_work.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/recalculate_phenix_refine_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/direct_methods_light.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_split_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_to_map_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/tst_mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_symmetry_copies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/libtbx_phil_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_shake.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/prepare_model_for_rsr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_segids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_copy_select.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_as_pdb_1atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_link_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_bioinformatics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_user_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_without_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_ligs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_atom_selections_10k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_multimodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_group_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_selected_hierarchy_flip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager_wrapping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_pdb_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_miller_sort_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_generate_n_char_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_call_consistency.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_cif_inputs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_id_str.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_all_chain_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_restraints_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_xray_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_lex_parse_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/write_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fcf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tokens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/parsers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/lexer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/crystal_symmetry_from_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/pymol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/write_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/read_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/fpfm_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/get_pubmed_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif_as_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/xplor.map.show_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/patterson_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cbf_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/flip_symmetric_amino_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.b_factor_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_completion_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.dump_as_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/blast_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.join_fragment_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz.dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_get_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dano_as_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.transfer_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtrix_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.print_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_as_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/effective_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/detector_image_as_png.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.insert_scale_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/explore_metric_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_miller_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_accumulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/biomt_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/build_phil_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/isomorphous_difference_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_atoms_by_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/poscar_as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/csv_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_show_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_centers_of_mass.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dtrek.to_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/crystal_symmetry_from_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/tst_xplormap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif_mtz_data_labels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/space_group_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_sdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/index_fobs_sigma_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/tst_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/pdb_remarks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/restraint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/ncs_spec.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/common.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/real_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtrix_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/crystal_symmetry_from_ref.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/dtrek_symmetry_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/reflnlist_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/cif_conversions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/import_data_and_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdbe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/web_service_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/aa_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_rna_dna_atom_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/crystal_symmetry_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_rna_dna_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/misc_records_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/tst_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_atom_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/cryst1_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rna_dna_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_2_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/experiment_type.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdb_v3_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hybrid_36.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_aa_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/amino_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_3_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/nucleic_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/download.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_290_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ncbi_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/homologues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ebi_wu_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/xmlbuild.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/local_blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pdb_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/alignment_as_hsearch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders_depending_on_smtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_debug_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/noir.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/marIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/dtrek.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/active_area_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/bruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_cbf_comp_read_meth.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/edf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_py_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/beam_center_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/detectorbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cspad_detector_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/camera_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation_max_iv_trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/config_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/spot_xy_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxisbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_raxis2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_slice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/macscience.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/filters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/saturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis_nonsquare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/url_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/npy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/hamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/image_from_http_request.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/tst_strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/crystal_symmetry_from_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_miller_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_dano.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/blank_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/integrate_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/read_ascii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xparm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/gain_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/spot_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/logfiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/cod_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraint_file_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/crystal_symmetry_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/ranges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/space_group_dictionary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx_cif_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg copying /<>/.pybuild/cpython3_3.12/build/fast_linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_clustering_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_covalent_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_sasaki_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_optional_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_nexus_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_integration_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/max_like.py to max_like.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/energy_scan_notch_finder.py to energy_scan_notch_finder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/time.py to time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/construct_frame.py to construct_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/jungfrau.py to jungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/rayonix.py to rayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py to cspad_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/cspad.py to cspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/xtc.py to xtc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/flumpy.py to flumpy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/SmarGonShadowMask.py to SmarGonShadowMask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image_average.py to image_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_matching_images.py to print_matching_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_registry.py to show_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/debug_memory.py to debug_memory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/plot_detector_models.py to plot_detector_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/overload.py to overload.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image2pickle.py to image2pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/detector_superpose.py to detector_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/install_format.py to install_format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_header.py to print_header.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/display_parallax_correction.py to display_parallax_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/saturation.py to saturation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_matching_formats.py to show_matching_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/read_sequence.py to read_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/depends_on.py to depends_on.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_mask_info.py to show_mask_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/datablock.py to datablock.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/crystal.py to crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/profile.py to profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan.py to scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan_helpers.py to scan_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers_types.py to detector_helpers_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/experiment_list.py to experiment_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/beam.py to beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/goniometer.py to goniometer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers.py to detector_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/xds.py to xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/filename.py to filename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/load.py to load.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache.py to filecache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/to_xds.py to to_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/resolution_corners.py to resolution_corners.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache_controller.py to filecache_controller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/sequence_filenames.py to sequence_filenames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCNoDateStamp.py to FormatSMVADSCNoDateStamp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImageLazy.py to FormatMultiImageLazy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerChessID7B2.py to FormatCBFMiniEigerChessID7B2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSNAPSID19.py to FormatSMVADSCSNAPSID19.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatGatanDM4.py to FormatGatanDM4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatROD.py to FormatROD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI51.py to TemplatePYCXI51.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPY.py to FormatPY.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerPhoton.py to FormatBrukerPhoton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPilatusHelpers.py to FormatPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBruker.py to FormatBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Lambda.py to FormatHDF5Lambda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN926.py to FormatSMVADSCSN926.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturn.py to FormatSMVRigakuSaturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py to FormatCBFMiniPilatusDESY6MSN115.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMini.py to FormatCBFMini.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5PAL.py to FormatHDF5PAL.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py to FormatCBFMiniPilatusDLS6MSN114.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCmlfsom.py to FormatSMVADSCmlfsom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmx.py to FormatNXmx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISII.py to FormatRAXISII.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py to FormatCBFMiniEigerDLS16MSN160.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniADSCHF4M.py to FormatCBFMiniADSCHF4M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS.py to FormatNXmxDLS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py to FormatCBFMiniPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBF.py to FormatCBF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMV.py to FormatSMV.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTC.py to FormatXTC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusXXX.py to FormatCBFMiniPilatusXXX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/image.py to image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS12M.py to FormatCBFMiniPilatusDLS12M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Format.py to Format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN928.py to FormatSMVADSCSN928.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN442.py to FormatSMVADSCSN442.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYmultitile.py to FormatPYmultitile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py to FormatCBFFullPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCJungfrau.py to FormatXTCJungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py to FormatCBFMiniPilatusSOLEILPX16MSN106.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexus.py to FormatHDF5EigerNearlyNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMRC.py to FormatMRC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN905.py to FormatSMVADSCSN905.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py to FormatCBFMiniEigerPhotonFactory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py to FormatCBFMiniPilatus3APS19ID6MSN132.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuEiger.py to FormatSMVRigakuEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTile.py to FormatCBFMultiTile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nexus.py to nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaRayonix.py to FormatHDF5SaclaRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatus.py to FormatCBFFullPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexus.py to FormatNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py to FormatCBFFullPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCDBG.py to FormatSMVADSCDBG.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatEDFALS733.py to FormatEDFALS733.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py to FormatCBFFullPilatusDLS300KSN104.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPetraP14.py to FormatCBFMiniEigerPetraP14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py to FormatCBFMiniEigerMaxIVBio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py to FormatCBFMiniPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFCspad.py to FormatCBFCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLSI19_2.py to FormatNXmxDLSI19_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusHelpers.py to FormatCBFMiniPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py to FormatNXmxEigerFilewriterESRFID232.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigaku.py to FormatSMVRigaku.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200.py to FormatSMVRigakuA200.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerFixedChi.py to FormatBrukerFixedChi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTileHierarchy.py to FormatCBFMultiTileHierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXIS.py to FormatRAXIS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI7d.py to TemplatePYCXI7d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16MI03.py to FormatNXmxDLS16MI03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISIVSpring8.py to FormatRAXISIVSpring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py to FormatSMVRigakuSaturnSN09040159.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN457.py to FormatSMVADSCSN457.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN915.py to FormatSMVADSCSN915.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonix.py to FormatTIFFRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/cbf_writer.py to cbf_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatStill.py to FormatStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixESRF.py to FormatTIFFRayonixESRF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsu.py to FormatSMVHamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN445.py to FormatSMVADSCSN445.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFHelpers.py to FormatTIFFHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI71.py to TemplatePYCXI71.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py to FormatHDF5EigerNearlyNexusSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVCMOS1.py to FormatSMVCMOS1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatDIP2030b.py to FormatDIP2030b.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMarIP.py to FormatMarIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI61.py to TemplatePYCXI61.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI32.py to TemplatePYCXI32.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauHack.py to FormatNexusJungfrauHack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVJHSim.py to FormatSMVJHSim.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCEpix.py to FormatXTCEpix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecified.py to FormatPYunspecified.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullByteOffset.py to FormatCBFFullByteOffset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py to FormatSMVRigakuA200SPring8BL26B1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5.py to FormatHDF5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixSPring8.py to FormatTIFFRayonixSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauExt.py to FormatNexusJungfrauExt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py to FormatSMVRigakuSaturnSN11480296.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixXPP.py to FormatTIFFRayonixXPP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxED.py to FormatNXmxED.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py to FormatCBFMiniPilatusDLS6MSN114DMM.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py to FormatCBFMiniPilatusDLS6MSN119.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI41.py to TemplatePYCXI41.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py to FormatSMVHamamatsuSPring8BL32XU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuPilatus.py to FormatSMVRigakuPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN.py to FormatSMVADSCSN.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusTimepix2M.py to FormatNexusTimepix2M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXDS.py to FormatXDS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Registry.py to Registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecifiedStill.py to FormatPYunspecifiedStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFF.py to FormatTIFF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaMPCCD.py to FormatHDF5SaclaMPCCD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriter.py to FormatNXmxEigerFilewriter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus.py to FormatCBFMiniPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCMultipleDetectors.py to FormatXTCMultipleDetectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCRayonix.py to FormatXTCRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nxmx_writer.py to nxmx_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py to FormatCBFMiniPilatusSPring8_6MSN125.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Sacla.py to FormatHDF5Sacla.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI31.py to TemplatePYCXI31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFull.py to FormatCBFFull.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py to FormatCBFMiniPilatusCHESS_6MSN127.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSC.py to FormatSMVADSC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFBruker.py to FormatTIFFBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py to FormatSMVRigakuSaturnSN07400090.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVTimePix_SU.py to FormatSMVTimePix_SU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSER.py to FormatSER.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImage.py to FormatMultiImage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN920.py to FormatSMVADSCSN920.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVNOIR.py to FormatSMVNOIR.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnNoTS.py to FormatSMVRigakuSaturnNoTS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEiger.py to FormatCBFMiniEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16M.py to FormatNXmxDLS16M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCCspad.py to FormatXTCCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/rotate_and_average.py to rotate_and_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py to PILATUS_2M_S_N_24_0107_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py to PILATUS_300K_S_N_3_0104_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/tst_spherical_bessel_jn.py to tst_spherical_bessel_jn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/tst_direct_summation.py to tst_direct_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/sweep_strength.py to sweep_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/find_active_area.py to find_active_area.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/sphere_formulae.py to sphere_formulae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/exception.py to exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/close_spots_detail.py to close_spots_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/imagefiles.py to imagefiles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache.py to apache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/multipart_encoder.py to multipart_encoder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/adsc_client.py to adsc_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_read_file.py to spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/pilatus_client.py to pilatus_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_dials.py to apache_dials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_client_push.py to spotfinder_server_client_push.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/bcsb_client_example.py to bcsb_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py to mp_spotfinder_server_is_alive.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/general_client_example.py to general_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/specific_client_example.py to specific_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_utils.py to apache_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_bcsb.py to apache_bcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py to method2_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py to ice_nztt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py to ice2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py to spotreporter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/stats_distl.py to stats_distl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_phil.py to cxi_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_run3.py to cxi_run3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/wrappers.py to wrappers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/proq2.py to proq2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/invariant_domain.py to invariant_domain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel.py to tst_fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce.py to tst_reduce.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/make_fake_anomalous_data.py to make_fake_anomalous_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ligand_ncs.py to tst_ligand_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_scattering_type_registry.py to tst_scattering_type_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_prune_model.py to tst_prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py to tst_cis_trans_peptide_link.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_maps_misc.py to tst_maps_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py to tst_cif_as_mtz_wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_mtz2map.py to tst_mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_statistics_output.py to tst_statistics_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_map.py to tst_model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_metal_link_1.py to tst_metal_link_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py to tst_refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py to tst_isomorphous_difference_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py to tst_add_arrows_on_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rigid_bond_test.py to tst_rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rank_scale_map.py to tst_rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sort_hetatms.py to tst_sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py to tst_regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_anomalous_substructure.py to tst_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_flipping_his.py to tst_flipping_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_special_term_at_end.py to tst_special_term_at_end.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py to tst_apply_cif_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_models_to_from_chains.py to tst_models_to_from_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ncs.py to tst_find_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py to tst_model_set_hydrogen_bond_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py to tst_model_tors_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model.py to tst_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py to tst_model_biomt_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py to tst_model_biomt_mtrix_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py to tst_model_cart_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ncs.py to tst_model_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_mtrix.py to tst_model_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_2.py to tst_model_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py to tst_model_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py to tst_model_remove_alternative_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py to tst_model_dedeuterate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py to tst_model_utils_merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py to tst_model_get_vdw_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_merge.py to tst_model_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_symmetry.py to tst_model_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py to tst_model_neutralize_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_map.py to tst_model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder.py to tst_polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geometry_minimization.py to tst_geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_msa.py to tst_msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_coeffs_simple.py to tst_map_coeffs_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py to tst_ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py to tst_ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py to tst_ncs_search_flips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py to tst_minimization_ncs_constraints_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py to tst_minimization_ncs_constraints2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py to tst_geometry_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py to tst_ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py to tst_minimization_ncs_constraints3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py to tst_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_loop_closure.py to tst_loop_closure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_model_cc.py to tst_map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ss_structure.py to tst_find_ss_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_angle.py to tst_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fix_rotamer_outliers.py to tst_fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py to tst_fmodel_no_cryst1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce_timeout.py to tst_reduce_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ml_estimate.py to tst_ml_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py to tst_helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validate_ligands.py to tst_validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_misc.py to tst_fmodel_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_2.py to tst_polder_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validation_summary.py to tst_validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cc_star.py to tst_cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_table_one.py to tst_table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_remediate.py to tst_altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_h_to_water.py to tst_add_h_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_schrodinger_interface.py to tst_schrodinger_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_dynamics_cli.py to tst_dynamics_cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_process_predicted_model.py to tst_process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ringer.py to tst_ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_sequence.py to tst_model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_pdbtools.py to tst_pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_minimize_chain.py to tst_minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_command_line_input.py to tst_command_line_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_3.py to tst_polder_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_domains_from_pae.py to tst_domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_adp_restraints.py to tst_adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_alignment.py to tst_alignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_ccs.py to tst_polder_ccs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_box.py to tst_polder_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py to tst_psi_phi_extraction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_origin_ids.py to tst_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py to tst_u_tls_vs_u_ens_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py to tst_formula_t_S_10_vs_11_4muy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py to tst_u_tls_vs_u_ens_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py to tst_u_tls_vs_u_ens_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py to tst_formula_t_S_10_vs_11_2igd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py to tst_tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py to tst_u_tls_vs_u_ens_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_utils.py to tst_tls_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py to tst_tls_refinement_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py to tst_tls_optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py to tst_u_tls_vs_u_ens_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py to tst_tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py to tst_get_t_scheme.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_chain_comparison.py to tst_chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py to tst_geo_min_restraints_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_chain_break.py to tst_altloc_chain_break.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_1.py to tst_polder_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_2.py to tst_fmodel_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_type_parser.py to tst_map_type_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sequence_validation.py to tst_sequence_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_clashes.py to tst_clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_multi_residue_class.py to tst_multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_fd.py to tst_fmodel_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_probe.py to tst_probe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_real_space_correlation.py to tst_real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/skew_kurt_plot.py to skew_kurt_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/tst_hbond.py to tst_hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/data_filtering.py to data_filtering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py to rotamer_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py to sample_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/all_his.py to all_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py to find_ss_from_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_1.py to tst_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_2.py to tst_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_3.py to tst_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py to tst_ss_id_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_io.py to tst_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/proteins.py to proteins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_segid.py to tst_segid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py to secondary_structure_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/nucleic_acids.py to nucleic_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py to tst_insertion_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py to regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_04.py to tst_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_02.py to tst_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/pair_interaction.py to pair_interaction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_05.py to tst_05.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_03.py to tst_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_01.py to tst_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/maxlik.py to maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_maxlik.py to tst_maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_max_lik.py to tst_max_lik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/max_like_non_uniform.py to max_like_non_uniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py to tst_mmtbx_probe_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/Helpers.py to Helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/AtomTypes.py to AtomTypes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py to CompareOriginalAndNewProbeAtomInfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_sa.py to tst_sa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/ensemble_cd.py to ensemble_cd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/cartesian_dynamics.py to cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py to tst_cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta.py to antiparallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py to antiparallel_beta_bridge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/how_to.py to how_to.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/regular_helix_definitions.py to regular_helix_definitions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/parallel_beta.py to parallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_math.py to cablam_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_fingerprints.py to cablam_fingerprints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_res.py to cablam_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_align.py to cablam_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py to tst_mcl_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py to check_cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py to cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py to tst_multi_residue_rna.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py to hydrogen_bonding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py to cdl_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py to tst_cdl_nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py to tst_rdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py to tst_pH_mechanism.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py to cdl_svl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py to sf4_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega_database.py to omega_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py to cdl_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega.py to omega.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py to tst_cis_c_n_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py to multi_residue_cdl_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py to density_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py to tst_mutli_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py to nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py to tst_omega_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py to tst_mcl_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/histidines.py to histidines.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py to tst_rna_dna_fragments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py to multi_base_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py to altloc_weighting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py to investigate_rotamer_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py to pH_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl.py to mcl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rotamers.py to rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py to rdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py to hpdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py to bond_angle_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py to tst_mcl_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py to tst_poly_ca_multi_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py to mcl_sf4_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py to metal_coordination_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py to testing_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py to tst_cdl_esd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py to LinkedResidues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py to multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py to tst_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py to tst_hpdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py to helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/partial_omit_map.py to partial_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_analysis.py to tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sort_hetatms.py to sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/anneal_real_space.py to anneal_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/density_modification.py to density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/distance_difference.py to distance_difference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sisa.py to sisa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py to reciprocal_space_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/monomer_library.comp_as_motif.py to monomer_library.comp_as_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py to show_r_factors_by_shell.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py:106: SyntaxWarning: invalid escape sequence '\(' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_suspicious_residues.py to show_suspicious_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls.py to tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/verify_mon_lib_data.py to verify_mon_lib_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_comparison.py to map_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py to apply_ncs_to_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/simulate_low_res_data.py to simulate_low_res_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_map.py to model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_peaks_holes.py to find_peaks_holes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development.aev.py to development.aev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/altloc_remediate.py to altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_atom_selection.py to pdb_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py to estimate_bijvoet_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ssm_rmsd_for_chains.py to ssm_rmsd_for_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cdl_lookup.py to cdl_lookup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/dynamics.py to dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/super.py to super.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/f000.py to f000.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer_score.py to emringer_score.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maps.py to maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/search_pdb_symmetry.py to search_pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fake_f_obs.py to fake_f_obs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ions.py to validate_ions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_screen.py to water_screen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compute_map_coefficients.py to compute_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_structure_factors.py to map_to_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validation_summary.py to validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_tls_groups.py to find_tls_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/kinemage.py to kinemage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development_fem.py to development_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_model_histogram.py to map_to_model_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/r_factor_statistics.py to r_factor_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_idealization.py to model_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rotamer_outliers.py to fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_static_disorder.py to analyze_static_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compare_ligands.py to compare_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/strip_model.py to strip_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_residue_in_pdb.py to find_residue_in_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_diff_map.py to real_space_diff_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mtz2map.py to mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/get_related_ensemble.py to get_related_ensemble.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/angle.py to angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maximum_entropy_map.py to maximum_entropy_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rank_scale_map.py to rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chains_as_models.py to chains_as_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_map.py to model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_sequence.py to model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cif_as_mtz.py to cif_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fetch_pdb.py to fetch_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_view_ad_hoc.py to pdb_view_ad_hoc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py to mon_lib_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rama_outliers.py to fix_rama_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prune_model.py to prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py to rebuild_rotarama_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel.py to fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py to refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_box.py to map_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rigid_bond_test.py to rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/models_as_chains.py to models_as_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cc_star.py to cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/massage_data.py to massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ringer.py to ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_model_distances.py to model_model_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel_simple.py to fmodel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py to rebuild_cablam_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/perigee.py to perigee.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt_fd.py to afitt_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_H_cl_app.py to validate_H_cl_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_restraints.py to secondary_structure_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_validation.py to secondary_structure_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_waters.py to validate_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_polygon_data.py to tst_polygon_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/output.py to output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_gui.py to tst_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py to tst_map_model_cc_and_vals_per_atom_xtal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/kick.py to kick.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fem.py to fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map.py to tst_composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/composite_omit_map.py to composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py to tst_composite_omit_map_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/correlation.py to correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/map_model_cc.py to map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/mtriage.py to mtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_correlation.py to tst_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py to tst_composite_omit_map_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py to pdb_distances.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:777: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:779: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:816: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1191: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1194: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1499: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1501: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1503: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1505: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1825: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1879: SyntaxWarning: invalid escape sequence '\/' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1988: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1991: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2318: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2324: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2892: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2979: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2981: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/arrays.py to arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze.py to tst_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py to tst_find_region_max_value.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py to tst_molprobity_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py to tst_ramalyze2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py to tst_chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py to tst_molprobity_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py to tst_molprobity_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rna_validate.py to tst_rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_waters.py to tst_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py to tst_clashscore_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py to tst_mp_geo_chiral_volume_cases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py to tst_molprobity_arguments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py to tst_keep_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_model_properties.py to tst_model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py to tst_molprobity_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam_2.py to tst_cablam_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py to tst_rama_z_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/run_restraints.py to run_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore.py to tst_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_undowser.py to tst_undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_suitename.py to tst_suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_omegalyze.py to tst_omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py to tst_rama_z_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py to tst_mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py to tst_mp_geo_endtoend.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rotalyze.py to tst_rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py to tst_symmetry_SS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo.py to tst_mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py to tst_do_flips_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py to tst_cbetadev_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py to tst_molprobity_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py to tst_hydrogen_addition_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev.py to tst_cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/convert_lists.py to convert_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py to convert_from_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py to mean_devs_others_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ensembles.py to ensembles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/fav_lists.py to fav_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/waters.py to waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/model_properties.py to model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbd_utils.py to cbd_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py to mean_devs_VAL_THR_ILE_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py to mean_devs_PRO_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comprehensive_residue.py to comprehensive_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/datasets.py to datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/chain_comparison.py to chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py to kinemage_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/cif_parser.py to cif_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/external.py to external.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py to base_qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py to tst_geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qm_manager.py to qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_manager.py to tst_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/ramachandran.py to ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py to tst_c_beta_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py to tst_reference_coordinate2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py to tst_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qi_utils.py to qi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py to geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/orca_manager.py to orca_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py to quantum_restraints_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py to tst_reference_coordinate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/c_beta.py to c_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/mopac_manager.py to mopac_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/reference.py to reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py to rotamer_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py to torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py to reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py to tst_torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py to tst_reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py to tst_reference_model_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Movers.py to Movers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/InteractionGraph.py to InteractionGraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py to tst_mmtbx_reduce_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Optimizers.py to Optimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model.py to f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/tncs.py to tncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/cartesian_restraints.py to cartesian_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_utils.py to ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py to ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_params.py to ncs_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs.py to ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_search.py to ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/find_peaks.py to find_peaks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/chemistry.py to chemistry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_basics.py to ready_set_basics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/electrons.py to electrons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/hierarchy_utils.py to hierarchy_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/xtal_screens.py to xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_ready_set_utils.py to tst_ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_xtal_screens.py to tst_xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_utils.py to ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/rdkit_utils.py to rdkit_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip_tasks.py to xmanip_tasks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py to tst_fit_kexpb_to_ktotal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py to tst_kb_sol_u_star_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py to bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_scaler.py to tst_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py to multi_mask_bulk_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py to tst_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py to tst_aniso_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example2.py to example2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py to kbu_refinery.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py to tst_flat_nonuniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py to tst_bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/scaler.py to scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/mosaic.py to mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py to f_model_all_scales.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example.py to example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/msa.py to msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_analyze_model.py to tst_analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/backbone.py to backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/analyze_model.py to analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_backbone.py to tst_backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/refinement.py to refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/plot_weights.py to plot_weights.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py to anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group_2.py to tst_group_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/print_statistics.py to print_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_occupancy_selections.py to tst_occupancy_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/adp_refinement.py to adp_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py to tst_anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/orca.py to orca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/refinement_flags.py to refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/wx_tardy_pdb.py to wx_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/targets.py to targets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py to tst_rigid_body_groups_from_pdb_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py to ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py to ensemble_probability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_fit_rotamers.py to tst_fit_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_refinement_flags.py to tst_refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_real_space_simple.py to tst_real_space_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py to tst_select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/group.py to group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group.py to tst_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py to minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_monitor.py to minimization_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py to inspect_tardy_trajectory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/occupancies.py to occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py to flip_peptide_side_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/weights_params.py to weights_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_misc.py to tst_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/energy_monitor.py to energy_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py to tst_aa_residue_axes_and_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py to tst_fit_residues_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py to tst_fit_residue_0H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/weight.py to weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py to tst_fit_residues_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py to explode_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_flipbase.py to tst_flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py to tst_fit_residue_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py to tst_fit_residues_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py to tst_fit_residue_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py to tst_individual_sites_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py to tst_individual_sites_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_monitor.py to tst_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residues.py to fit_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py to tst_fit_residues_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py to tst_fit_residue_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py to tst_individual_sites_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_weight.py to tst_weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py to tst_fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py to tst_fit_residue_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py to tst_fit_residues_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residue.py to fit_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py to tst_fit_residue_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_his.py to fit_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py to tst_fit_residue_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py to tst_fit_residues_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py to fit_small_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py to tst_fit_residue_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/individual_sites.py to individual_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py to tst_fit_residue_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py to tst_fit_residues_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py to tst_fit_residues_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_water.py to fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py to tst_fit_residue_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/twin_f_model.py to twin_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/probabalistic_detwinning.py to probabalistic_detwinning.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/tst_density_modification.py to tst_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/shared_types.py to shared_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/clash.py to clash.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/asa.py to asa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/altloc.py to altloc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/topology.py to topology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/sphere_surface_sampling.py to sphere_surface_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/rotatable_bonds.py to rotatable_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/grid2d.py to grid2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/tst_switch_rotamers.py to tst_switch_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/ntc.py to ntc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_parameters.py to tst_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_approx_zn.py to tst_pick_approx_zn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca_svm.py to tst_pick_ca_svm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_k.py to tst_pick_k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pickle.py to tst_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_mg.py to tst_pick_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/identify.py to identify.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_geometries.py to tst_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_ca.py to tst_validate_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca.py to tst_pick_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_symmetry_axis.py to tst_symmetry_axis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_mg.py to tst_validate_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/tst_classifier.py to tst_classifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/dump_sites.py to dump_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/build.py to build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/halides.py to halides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_environment.py to tst_environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/environment.py to environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/resolve_resources.py to resolve_resources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/domains_from_pae.py to domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitealyze.py to suitealyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/transdent.py to transdent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninput.py to suiteninput.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninit.py to suiteninit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/diangle.py to diangle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/mainchain.py to mainchain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/dualparse.py to dualparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenout.py to suitenout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenamedefs.py to suitenamedefs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suites.py to suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py to berkeley_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/ccd.py to ccd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/starting_conformations.py to starting_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/custom_gm.py to custom_gm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_idealization.py to loop_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains_2.py to tst_extend_sidechains_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_make_library.py to tst_make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/minimize_chain.py to minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/lifi.py to lifi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/make_library.py to make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/merge_models.py to merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains.py to tst_extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/tst_ias.py to tst_ias.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm15.py to perm15.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm12.py to perm12.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm13.py to perm13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm14.py to perm14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/decompose.py to decompose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/ladp.py to ladp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm10.py to perm10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/optimise_amplitudes.py to optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm11.py to perm11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/analysis.py to analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_optimize.py to mod_optimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_masks.py to mod_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_ga.py to mod_ga.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_mtz.py to mod_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/standard_geometry_cif.py to standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py to tst_rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_standard_geometry_cif.py to tst_standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/rcsb_web_services.py to rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py to tst_superpose_ideal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_server.py to tst_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py to hydrogen_restrictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py to tst_rna_dna_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py to tst_pdb_interpretation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_linking.py to tst_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conv_v2_v3.py to conv_v2_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_setup.py to linking_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py to tst_iron_sulfur_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/idealized_aa.py to idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py to tst_geo_reduce_for_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_chg.py to tst_chg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_utils.py to glyco_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py to tst_glyco_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py to tst_correct_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py to tst_all_cif_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_triage.py to tst_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_types.py to tst_cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py to tst_rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rotamer_utils.py to rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py to tst_glyco_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_mixins.py to linking_mixins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py to conformation_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py to tst_deuterium_terminii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py to tst_pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_paral_geo.py to tst_paral_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_types.py to cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_utils.py to linking_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/server.py to server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py to tst_pdb_interpretation_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py to tst_neutron_distance.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py to tst_idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_selection.py to tst_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py to tst_metal_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py to tst_protein_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/bondlength_defaults.py to bondlength_defaults.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py to rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py to tst_rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py to populate_auto_linking_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py to correct_hydrogen_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py to glyco_chiral_values.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py to tst_carbo_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_triage.py to cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py to tst_pdb_interpretation_ncs_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py to tst_tyr_from_gly_and_bnz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_masks.py to tst_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_asu_mask.py to tst_asu_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py to tst_riding_fd_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/find.py to find.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_manager.py to tst_riding_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/validate_H.py to validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py to tst_parameterization_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py to tst_parameterization_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py to tst_riding_fd_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_validate_H.py to tst_validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/parameterization.py to parameterization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py to tst_riding_fd_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py to tst_parameterization_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py to tst_parameterization_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py to tst_parameterization_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py to tst_add_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/riding.py to riding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py to tst_parameterization_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py to tst_add_hydrogen_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/build_hydrogens.py to build_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py to specialised_hydrogen_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py to tst_riding_fd_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py to tst_add_hydrogen_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_0.py to tst_add_hydrogen_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py to tst_parameterization_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/connectivity.py to connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py to tst_riding_minimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py to tst_riding_fd_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py to reduce_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py to tst_parameterization_9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py to tst_riding_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py to tst_parameterization_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/clashes.py to clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_em_rscc.py to tst_em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_scoring.py to em_scoring.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rscc.py to em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_emringer.py to tst_emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rolling.py to em_rolling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absolute_scaling.py to absolute_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/mean_f_rms_f.py to mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_scaling.py to relative_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py to tst_mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_scaling.py to tst_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pair_analyses.py to pair_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py to tst_xtriage_twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/rip_scale.py to rip_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sir_scale.py to sir_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fa_estimation.py to fa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/random_omit.py to random_omit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twin_analyses.py to twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/bayesian_estimator.py to bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/thorough_outlier_test.py to thorough_outlier_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_absences.py to tst_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py to tst_plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/siras_scale.py to siras_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pre_scale.py to pre_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absences.py to absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/make_param.py to make_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_sigmaa.py to tst_sigmaa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sad_scale.py to sad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/data_statistics.py to data_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_massage_data.py to tst_massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage.py to tst_xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/basic_analyses.py to basic_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absence_likelihood.py to absence_likelihood.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py to tst_bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_plots.py to outlier_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_rejection.py to outlier_rejection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_wilson.py to relative_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_outlier.py to tst_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twmad_scale.py to twmad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py to ta_alpha_beta_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sigmaa_estimation.py to sigmaa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py to massage_twin_detwin_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ordered_solvent.py to ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/map_to_water.py to map_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py to ensemble_ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py to tst_geostd_vs_sidechain_angles_props.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval.py to ramachandran_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py to tst_rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/nqh.py to nqh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py to ramachandran_eval_deprecated.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/n_dim_table.py to n_dim_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/sidechain_angles.py to sidechain_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/rotamer_eval.py to rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/tst_cma_es.py to tst_cma_es.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/cma_es_interface.py to cma_es_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py to self_match.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py to sample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/fonts.py to fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_motion_on_tab.py to wx_motion_on_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/quadrics.py to quadrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_leapmotion.py to wx_viewer_leapmotion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl_managed.py to gl_managed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/util.py to util.cpython-312.pyc /usr/lib/python3.12/dist-packages/gltbx/util.py:61: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/try_imports.py to try_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_functions_bpl.py to generate_functions_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl.py to gl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer.py to wx_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewers_images.py to wx_viewers_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_cube.py to wx_cube.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/images.py to images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_ellipsoids.py to tst_ellipsoids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_example.py to wx_viewer_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_viewer_utils.py to tst_viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/viewer_utils.py to viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_fonts_ucs_cpp.py to generate_fonts_ucs_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_ellipsoids_test.py to wx_ellipsoids_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/extract_opengl_specs.py to extract_opengl_specs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/glu.py to glu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_defines_bpl.py to generate_defines_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_fonts.py to tst_fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_scene.py to wx_scene.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.wx_display.py to simage.wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.explore_completeness.py to simage.explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.solver.py to simage.solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/slip_viewer.py to slip_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.create.py to simage.create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/viewer.py to viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/example_viewer.py to example_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/ersatz_misset.py to ersatz_misset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py to instrument_specifics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py to tst_detector_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_validate.py to uc1_2_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2.py to uc1_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py to uc1_2_positions_idx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/compare_mosflm_xds.py to compare_mosflm_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions.py to uc1_2_positions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2a.py to uc1_2a.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/preferences.py to preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/phil_preferences.py to phil_preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/scope.py to scope.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/tst_sublattice.py to tst_sublattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/drivers.py to drivers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/pixels3d.py to pixels3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/integration.py to integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_wrap.py to spotfinder_wrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/results_base.py to results_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_frame.py to spotfinder_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/processing.py to processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration.py to calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/controls.py to controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/integration_core.py to integration_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/slip_helpers.py to slip_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/dual_resolution_helpers.py to dual_resolution_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py to deltapsi_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/simple_integration.py to simple_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py to dials_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/stills_integration.py to stills_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/spot_markup.py to spot_markup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py to tst_bragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py to tst_utils_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_ewald_sphere.py to tst_ewald_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_partial_derivatives.py to tst_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_predict.py to tst_predict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/do_index.py to do_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_dataset1.py to tst_dataset1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_auto_monoscan.py to tst_auto_monoscan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_labelit_index.py to run_labelit_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_spotfinder.py to run_spotfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/solver.py to solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/integrate_crude.py to integrate_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/refine_uc_cr.py to refine_uc_cr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/explore_completeness.py to explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/wx_display.py to wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/create.py to create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/tst_xfel1_simple.py to tst_xfel1_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_pdf.py to sim_pdf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_utils.py to sim_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/stats_index.py to stats_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/spot_shape.py to spot_shape.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/speckfinder.py to speckfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/oscillation_shots.py to oscillation_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/pixel_spread.py to pixel_spread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/fit_distribution.py to fit_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/silicon.py to silicon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/force_cell.py to force_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/nearest_neighbor.py to nearest_neighbor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_procedure.py to outlier_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_detection.py to outlier_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/test_dps.py to test_dps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/subgroup.py to subgroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/sgtbx_adaptor.py to sgtbx_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py to parameter_reduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/g_gradients.py to g_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py to example_frame_plugin_hidden.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/uc_frame.py to uc_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/pyslip.py to pyslip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/score_frame.py to score_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/tile_generation.py to tile_generation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_display.py to slip_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/ring_frame.py to ring_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py to slip_viewer_image_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py to tst_coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_converter.py to coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py to coordinate_frame_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/cell_assessment.py to cell_assessment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/lepage.py to lepage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/zuoreduction.py to zuoreduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/constrainment.py to constrainment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/tst_iotbx_converter.py to tst_iotbx_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/checklistctrl.py to checklistctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/layout.py to layout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/symmetry_dialog.py to symmetry_dialog.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/listeditor.py to listeditor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py to plot_anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/inspect_r_free_flags.py to inspect_r_free_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/wxpython.py to wxpython.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/show_file_info.py to show_file_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_statistics.py to pdb_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py to anomalous_differences_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/loggraph.py to loggraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/ensemble_validation.py to ensemble_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/icons.py to icons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/wx4_compatibility.py to wx4_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/metallicbutton.py to metallicbutton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/windows.py to windows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/blast.py to blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon.py to polygon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/path_dialogs.py to path_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/qstat_view.py to qstat_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/misc_dialogs.py to misc_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/sequence_view.py to sequence_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/segmentedctrl.py to segmentedctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/ints.py to ints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floatctrl.py to floatctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/intctrl.py to intctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/text_base.py to text_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice_multi.py to choice_multi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py to choice.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py:18: SyntaxWarning: invalid escape sequence '\*' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/numbers.py to numbers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/array_label.py to array_label.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tribool.py to tribool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floats.py to floats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/space_group.py to space_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strctrl.py to strctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/symop.py to symop.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strings.py to strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/unit_cell.py to unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/boolctrl.py to boolctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tree.py to tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/misc_ctrls.py to misc_ctrls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/simple_dialogs.py to simple_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/bitmaps.py to bitmaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/adp_statistics.py to adp_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/anomalous_scattering.py to anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/browser.py to browser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/heavy_atoms.py to heavy_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon_db_viewer.py to polygon_db_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/info_panels.py to info_panels.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:208: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:418: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/process_control.py to process_control.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/mtz_dump.py to mtz_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/custom_restraints.py to custom_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/app.py to app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/monitor.py to monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_xmlrpc_utils.py to tst_xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_topological_sort.py to tst_topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/env_config.py to env_config.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/log.py to log.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/introspection.py to introspection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/configure.py to configure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/runtime_utils.py to runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/object_oriented_patterns.py to object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/python_string.py to python_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/start_print_trace.py to start_print_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/statistics_info.py to statistics_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp.py to tst_easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_citations.py to tst_citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/metric_prefixes.py to metric_prefixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_runtime_utils.py to tst_runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/mpi4py.py to mpi4py.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_thread_utils.py to tst_thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_csh.py to install_csh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_bat.py to install_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_all.py to copy_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_build_libtbx.py to copy_build_libtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_runtime_sources.py to copy_runtime_sources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/table_utils.py to table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/try_hello_world_c.py to try_hello_world_c.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_untested.py to find_untested.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/path_utility.py to path_utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/git_avoid_merges.py to git_avoid_merges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports_crude.py to find_unused_imports_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_clutter.py to find_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bundle_as_exe.py to bundle_as_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/py_compile_all.py to py_compile_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_modules.py to list_modules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_host_and_user.py to show_host_and_user.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/nequal.py to nequal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/easy_qsub.py to easy_qsub.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py to assert_stdin_contains_strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remote_processing.py to remote_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/scons.py to scons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/extract_code_from_txt.py to extract_code_from_txt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py to list_source_files_sorted_by_size.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/wait_for_file.py to wait_for_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_ends_with.py to assert_stdin_ends_with.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/chunk.py to chunk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/line_count.py to line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clean_clutter.py to clean_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_dist.py to make_dist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/help.py to help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/epydoc_run.py to epydoc_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_old_style_classes.py to find_old_style_classes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_unzipsfx.py to create_unzipsfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/env_run.py to env_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_pickled_function.py to run_pickled_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_sphinx_html.py to make_sphinx_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_ext.py to import_all_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_pythonpath.py to show_pythonpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_tests_parallel.py to run_tests_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_binary_bundle.py to start_binary_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_but_no_repr.py to show_but_no_repr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_install_script_bat.py to create_install_script_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_available_slots.py to sge_available_slots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/check_libcpp.py to check_libcpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_line_count.py to assert_line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_in_repositories.py to find_in_repositories.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_qstat_counts.py to sge_qstat_counts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_tests.py to show_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_sys_executable.py to show_python_sys_executable.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remove_tree.py to remove_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_number_of_processors.py to show_number_of_processors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/raise_exception_for_testing.py to raise_exception_for_testing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_dist_paths.py to show_dist_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sphinx_build.py to sphinx_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_files.py to list_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_process.py to start_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_date_and_time.py to show_date_and_time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/analyse_code_comments.py to analyse_code_comments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_module_dependencies.py to show_module_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/printenv.py to printenv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_commands.py to show_commands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/ipython_shell_start.py to ipython_shell_start.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_not_show_diff.py to assert_not_show_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_repository_paths.py to show_repository_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_reserved_names.py to find_reserved_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/add_from_future_import_division.py to add_from_future_import_division.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_include_paths.py to show_include_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/seconds_since_the_epoch.py to seconds_since_the_epoch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/parallel_simple.py to parallel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_bin_path.py to show_bin_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numpy_version.py to show_numpy_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_variable_names.py to show_variable_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_python.py to import_all_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_full_command_path.py to show_full_command_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/dtrace.py to dtrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/any2unix.py to any2unix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports.py to find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_dependencies.py to show_python_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_files.py to find_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_all_on_path.py to show_all_on_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numeric_version.py to show_numeric_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_env.py to show_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/prime_factors_of.py to prime_factors_of.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_options.py to show_build_options.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_path.py to show_build_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_selfx.py to create_selfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_lib_path.py to show_lib_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin.py to assert_stdin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_under_build.py to find_under_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install.py to install.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_profile.py to easy_profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_multicore.py to tst_easy_mp_multicore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/complex_math.py to complex_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/crossmingw.py to crossmingw.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileServer.py to FileServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileClient.py to FileClient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/StartServer.py to StartServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileSocket.py to FileSocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/SocketServer.py to SocketServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/interface.py to interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/parser.py to parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/gui_objects.py to gui_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_interface.py to tst_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_tokenizer.py to tst_tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tokenizer.py to tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/callbacks.py to callbacks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_run.py to easy_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_path.py to tst_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/find_reference_cycles.py to find_reference_cycles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_binary_search.py to tst_binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_program_template.py to tst_program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/dlite.py to dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_pickle.py to tst_easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_find_unused_imports.py to tst_find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_fully_buffered_timeout.py to tst_fully_buffered_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/math_utils.py to math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_object_oriented_patterns.py to tst_object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_server_example.py to xmlrpc_server_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/str_utils.py to str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/console_utils.py to console_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_mp.py to easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_math_utils.py to tst_math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_dlite.py to tst_dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/load_env.py to load_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/forward_compatibility.py to forward_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subversion.py to subversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cli.py to cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/simplexml.py to simplexml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_pickle.py to easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/python_code_parsing.py to python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/objgraph.py to objgraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_representation.py to tst_representation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_utils.py to xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py to fastentrypoints.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:43: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:92: SyntaxWarning: invalid escape sequence '\.' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/looping.py to looping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py to polling.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py:282: SyntaxWarning: invalid escape sequence '\?' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/transfer.py to transfer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/submission.py to submission.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/status.py to status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py to scheduling_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/sge_utils.py to sge_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/generic.py to generic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/communication.py to communication.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/pbs_utils.py to pbs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/remote.py to remote.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/lsf.py to lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling.py to scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/code_analysis.py to code_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mainthread.py to mainthread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/philgen.py to philgen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/file_queue.py to file_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/socket_queue.py to socket_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/parallel_for.py to parallel_for.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/shared_resource.py to shared_resource.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/cluster_handler.py to cluster_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/process_pool.py to process_pool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/job_scheduler.py to job_scheduler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mp_handler.py to mp_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/thread_handler.py to thread_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/stacktrace.py to stacktrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_state.py to tst_easy_mp_state.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/topological_sort.py to topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/containers.py to containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/parallel.py to parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/pytest.py to pytest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/xcode_build_phase.py to xcode_build_phase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/timers.py to timers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/except_Exception.py to except_Exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_version.py to tst_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/wingide.py to wingide.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/thread_utils.py to thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/assert_utils.py to assert_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_scheduling.py to tst_scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subprocess_with_fixes.py to subprocess_with_fixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/smart_open.py to smart_open.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clusterTests.py to clusterTests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/binary_search.py to binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_python_code_parsing.py to tst_python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_containers.py to tst_containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_template.py to program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/file_clutter.py to file_clutter.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:12: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:14: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:16: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cpp_function_name.py to cpp_function_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyframe.py to pyframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/progress.py to progress.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/regenerate_module_files.py to regenerate_module_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_installer.py to create_windows_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_pkg.py to create_mac_pkg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py to install_base_packages.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py:840: SyntaxWarning: invalid escape sequence '\$' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/installer_utils.py to installer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/setup_installer.py to setup_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py to write_gui_dispatcher_include.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py to bootstrap.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:455: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:457: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/plus_installer.py to plus_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/make_bundle.py to make_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/rpath.py to rpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_distribution.py to install_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/package_defs.py to package_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyplot.py to pyplot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_str_utils.py to tst_str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pkg_utils.py to pkg_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/validation_lists.py to validation_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/hydrogens_button.py to hydrogens_button.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/view_refinement.py to view_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/xmlrpc_server.py to xmlrpc_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/interactive_edit.py to interactive_edit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/watch_file.py to watch_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/ligand_checklist.py to ligand_checklist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/simple_zoom_list.py to simple_zoom_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_group_matrices.py to space_group_matrices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py to convert_ccp4_symop_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py to trigonal_r_vs_tetragonal_i.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_consistency_checks.py to cr2o3_consistency_checks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives.py to structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_phase_o_phrenia.py to tst_phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py to list_non_principal_continuous_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py to g_exp_i_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_space_subgroups.py to tst_space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_constraints.py to site_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/adp_symmetry_constraints.py to adp_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_transform.py to miller_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py to tst_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/maximum_subgroups.py to maximum_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py to g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/neutron_structure_factors.py to neutron_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/change_hand_p31.py to change_hand_p31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py to fft_map_electron_density_around_atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_table.py to site_symmetry_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py to find_distances_using_cpp_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/sub_group_graph.py to sub_group_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/getting_started.py to getting_started.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py to test_levenberg_sparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/join.py to join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/scale.py to scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py to per_lattice_postrefinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_subset.py to data_subset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/task4.py to task4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test1.py to test1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_cc_half.py to test_cc_half.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_utilities.py to data_utilities.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/tst_permutations.py to tst_permutations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/show_results.py to show_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/sigma_correction.py to sigma_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_puckers.py to random_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/location_part.py to location_part.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_f_calc.py to random_f_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py to tst_g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_minimizers.py to unit_cell_minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/view_fft_map.py to view_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_4.py to structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/steve_collins.py to steve_collins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_common_sets.py to miller_common_sets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_refinement.py to unit_cell_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/f_model_example.py to f_model_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py to find_sys_abs_equiv_space_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py to le_page_1982_vs_lebedev_2005.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_2.py to structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/lebedev_2005_perturbation.py to lebedev_2005_perturbation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/ccp4_map.py to ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/quartz_structure.py to quartz_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/symops_530.py to symops_530.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/hirshfeld_test.py to hirshfeld_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py to tst_structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_primitive_cell.py to cr2o3_primitive_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py to tst_structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_subgroups.py to space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/analyze_adp.py to analyze_adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/reduced_cell_two_folds.py to reduced_cell_two_folds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py to exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_3.py to structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py to u_star_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py to sites_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py to site_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py to sites_least_squares_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py to tst_structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/map_skewness.py to map_skewness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py to tst_structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py to read_custom_scattering_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/van_der_waals_radii.py to van_der_waals_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/fp_fdp.py to fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/icsd_radii.py to icsd_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/attenuation_coefficient.py to attenuation_coefficient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/chemical_elements.py to chemical_elements.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/wavelengths.py to wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/sasaki.py to sasaki.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/neutron.py to neutron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/e_scattering.py to e_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/henke.py to henke.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/e_scattering_plots.py to e_scattering_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_fits.py to kissel_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_approx.py to itvc_approx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_section61_io.py to itvc_section61_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/combine_fits.py to combine_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py to create_n_gaussian_raw_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py to itvc_cross_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/rez_rez_grant.py to rez_rez_grant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/hydrogen_plots.py to hydrogen_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_kissel.py to itvc_kissel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_fits.py to itvc_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_io.py to kissel_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py to format_gaussian_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/formula.py to formula.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/tiny_pse.py to tiny_pse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/covalent_radii.py to covalent_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_fft_map.py to tst_miller_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_target_functors.py to tst_xray_target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sphericity.py to tst_sphericity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py to tst_sgtbx_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py to tst_sgtbx_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_diffuse.py to tst_diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_refine_xray_curvs.py to tst_refine_xray_curvs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_weighting_schemes.py to tst_weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_derivatives.py to tst_xray_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_show_cosets.py to tst_show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_loc_res.py to tst_loc_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_scaling.py to tst_direct_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py to tst_miller_double_step_filtration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_krivy_gruber.py to tst_krivy_gruber.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_find_best_cell.py to tst_find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal.py to tst_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_twin_target.py to tst_twin_target.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_triplet_generator.py to tst_triplet_generator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_coordination_sequences.py to tst_coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_amplitude_normalisation.py to tst_amplitude_normalisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization_failure.py to tst_xray_minimization_failure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py to tst_miller_merge_equivalents.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints.py to tst_geometry_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_web_change_basis.py to tst_web_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py to tst_maptbx_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py to tst_adp_aniso_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_math_module.py to tst_math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wilson_plot.py to tst_wilson_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_mask.py to tst_maptbx_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py to tst_sgtbx_special_op_simplifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem_2.py to tst_mem_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pointgroup_tools.py to tst_pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py to tst_sgtbx_tidy_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_space_asu.py to tst_direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py to tst_adp_constraints_cartesian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_2.py to tst_geometry_restraints_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wavelength_units.py to tst_wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints.py to tst_adp_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_f_model.py to tst_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray.py to tst_xray.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py to tst_geometry_restraints_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_french_wilson.py to tst_french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_denominators.py to tst_sgtbx_denominators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_expand_to_p1.py to tst_expand_to_p1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity_allsym.py to tst_connectivity_allsym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_statistics_graphs.py to tst_statistics_graphs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_statistics.py to tst_miller_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_create_models_or_maps.py to tst_create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py to tst_fcalc_fft_stability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grouped_data.py to tst_grouped_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_close_packing.py to tst_crystal_close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py to tst_map_weights_for_symmetry_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py to tst_sf_low_res_accuracy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization.py to tst_xray_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py to tst_sgtbx_site_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fast_nv1995.py to tst_fast_nv1995.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py to tst_space_group_type_tidy_cb_op_t.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_emma.py to tst_emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_harker.py to tst_sgtbx_harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_lookup_utils.py to tst_miller_lookup_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem.py to tst_mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pair_asu_table.py to tst_pair_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py to tst_prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_data_manipulation.py to tst_miller_data_manipulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py to tst_reciprocal_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py to tst_itvb_2001_table_a1427_hall_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py to tst_crystal_asu_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_fast_gradients.py to tst_xray_fast_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_r_free_utils.py to tst_r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_modifications.py to tst_grm_modifications.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py to tst_fourier_transform_real_part_at_x.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx.py to tst_sgtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_pickling.py to tst_grm_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_change_basis.py to tst_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_box.py to tst_maptbx_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller.py to tst_miller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_is_periodic.py to tst_map_is_periodic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/math_module.py to math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973.py to gruber_1973.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/reduction_base.py to reduction_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973_table_1.py to gruber_1973_table_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/krivy_gruber_1976.py to krivy_gruber_1976.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/iotbx_cif_validate.py to iotbx_cif_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/wyckoff.py to wyckoff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_hand.py to change_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/replay.py to replay.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/cgi_utils.py to cgi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/libtbx_help.py to libtbx_help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors.py to structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/frac_cart.py to frac_cart.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/io_utils.py to io_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/multiple_cell.py to multiple_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors_pdb.py to structure_factors_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_setting.py to change_setting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/explore_symmetry.py to explore_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/browse_settings.py to browse_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jvx.py to jvx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/web_links.py to web_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_index.py to jv_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py to guide_to_notation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_asu.py to jv_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/dispatcher.py to dispatcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/shelx.py to shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py to eltbx.show_fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cctbx_test_nightly.py to cctbx_test_nightly.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/diffuse.py to diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py to find_reticular_twin_laws.cpython-312.pyc /usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py:37: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/wavelength_units.py to wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/xray_structure.show.py to xray_structure.show.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_join.py to samosa_join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/precession_view.py to precession_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/space_group_info.py to space_group_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/structure_factor_timings.py to structure_factor_timings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/form_factor_query.py to form_factor_query.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_scale.py to samosa_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/translation_search.py to translation_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/tst_observations.py to tst_observations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_base.py to gradients_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py to from_scatterers_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients.py to gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py to from_scatterers_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py to from_scatterers_direct_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_direct.py to gradients_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_fft.py to gradients_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradient_flags.py to gradient_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/global_counters.py to global_counters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers.py to from_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/scatterer.py to scatterer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/target_functors.py to target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py to tst_shelxl_wght_ls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_r1.py to tst_r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/r1.py to r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observation_types.py to observation_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/reindexing.py to reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_reindexing.py to tst_reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_map_to_asu_isym.py to tst_map_to_asu_isym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/linking_class.py to linking_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/standard_cif_links.py to standard_cif_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py to tst_nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/lbfgs.py to lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py to tst_angle_derivs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py to tst_process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py to tst_proxy_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/base_geometry.py to base_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py to process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/auto_linking_types.py to auto_linking_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/dmtbx.py to dmtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py to rational_matrices_point_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/pointgroup_tools.py to pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/harker.py to harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_twin_laws.py to reticular_twin_laws.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sys_abs_equiv.py to sys_abs_equiv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/literal_description.py to literal_description.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_pg_tools.py to reticular_pg_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/bravais_types.py to bravais_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py to check_redundancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py to plane_group_reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py to short_cuts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py to facet_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py to cut_plane.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py to generate_cpp_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py to tst_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py to reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sub_lattice_tools.py to sub_lattice_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/plane_groups.py to plane_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/show_cosets.py to show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/symbol_confidence.py to symbol_confidence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/cosets.py to cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adptbx.py to adptbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_refine.py to cod_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_bfgs.py to tst_bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/eval_iso_vs_refined.py to eval_iso_vs_refined.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cif_refine.py to cif_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/bfgs.py to bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_dev.py to tst_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tardy_adaptor.py to tardy_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/dev.py to dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/pdb_dev.py to pdb_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/anharmonic.py to anharmonic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py to generate_sasaki_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py to generate_henke_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/rotation_parameters.py to rotation_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/r_free_utils.py to r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal_orientation.py to crystal_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py to burzlaff_zimmermann_dewolff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/coordination_sequences.py to coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/super_cell.py to super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/close_packing.py to close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/direct_space_asu.py to direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/find_best_cell.py to find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py to tst_distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_super_cell.py to tst_super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/electron_density_sampling.py to electron_density_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_epsilon.py to tst_cns_epsilon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_hl.py to tst_cns_hl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/create_models_or_maps.py to create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/github.py to github.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/direct_or_fft.py to direct_or_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_settings.py to make_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/fmt_utils.py to fmt_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py to approx_amplitude_vs_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx76.py to run_shelx76.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/cns_density_modification.py to cns_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/space_group_option_parser.py to space_group_option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_cns_input.py to make_cns_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/debug_utils.py to debug_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/structure_factor_utils.py to structure_factor_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx.py to run_shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/random_structure.py to random_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_examples.py to run_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/multipolar.py to multipolar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_mask.py to tst_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_loft.py to tst_loft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_target_and_gradients.py to tst_target_and_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mem.py to mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py to resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_bcr.py to tst_bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_ccp.py to tst_ccp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py to tst_real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py to tst_atom_radius_as_central_peak_width.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py to tst_get_percentile_cutoffs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation_2.py to tst_interpolation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_scales_errors.py to refine_scales_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/bcr.py to bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_asymmetric_map.py to tst_asymmetric_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/real_space_refinement_simple.py to real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_sharpening.py to refine_sharpening.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py to tst_peak_volume_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/prepare_map_for_docking.py to prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_curves.py to tst_atom_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py to tst_resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/box.py to box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation.py to tst_interpolation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py to tst_map_peak_3d_as_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/map_symmetry.py to map_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tokenization.py to tokenization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/fem_include_search_paths.py to fem_include_search_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/show_calls.py to show_calls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py to insert_write_at_start_of_each_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/split.py to split.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout_compile.py to tst_cout_compile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_equivalence.py to tst_equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/equivalence.py to equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/simple_compilation.py to simple_compilation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/intrinsics.py to intrinsics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout.py to tst_cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_read.py to tst_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/chimerax.py to chimerax.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py to tst_3_doc_hlo_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py to tst_4_doc_hlo_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py to tst_5_doc_hlo_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/exercise.py to exercise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py to tst_12_script_compare_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py to tst_17_script_rfactors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py to tst_7_doc_low_flex_advanced.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py to tst_19_doc_programming_tips_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py to tst_8_doc_maps_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_11_script_1.py to tst_11_script_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py to tst_15_doc_models_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py to tst_16_script_lbfgs_with_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py to tst_18_doc_programming_tips_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py to tst_13_script_ideal_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_py_from_html.py to tst_py_from_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py to tst_2_doc_hlo_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py to tst_10_doc_programming_tips_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py to tst_14_script_lbfgs_no_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py to tst_9_doc_maps_boxing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py to tst_6_doc_hlo_model_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_1_template.py to tst_1_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py to extract_script_from_html_cctbx_doc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/minimizer_comparisons.py to minimizer_comparisons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py to integrating_a_weighted_sinc_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_recipe.py to lbfgs_recipe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_array_loops.py to flex_array_loops.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/chebyshev_lsq_example.py to chebyshev_lsq_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/immoptibox_ports.py to immoptibox_ports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_grid.py to flex_grid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py to lbfgs_linear_least_squares_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/silver.py to silver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/rigid_body_refinement_core.py to rigid_body_refinement_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/principal_axes_of_inertia.py to principal_axes_of_inertia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/r3_utils.py to r3_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/dicts.py to dicts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_random_transform.py to tst_random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_transform.py to random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/graph_tools.py to graph_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/signal_utils.py to signal_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_graph.py to tst_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/robust_statistics.py to robust_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_robust.py to tst_robust.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_utils.py to random_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/test_problems.py to test_problems.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py to tst_normal_equations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns_solving.py to normal_eqns_solving.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns.py to normal_eqns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/tst_wigner3j.py to tst_wigner3j.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_2d_zernike.py to tst_2d_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900.py to fliege_mayer_900.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian.py to tst_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_curve_fitting.py to tst_curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py to tst_gaussian_fit_1d_analytical.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_cubic_equation.py to tst_cubic_equation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_halton.py to tst_halton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_exp_functions.py to tst_exp_functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_g_function.py to tst_g_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_resample.py to tst_resample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_weighted_correlation.py to tst_weighted_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py to tst_minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_euler_angles.py to tst_euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py to tst_error_propagation_matrix_inverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gcd.py to tst_gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_dmatrix.py to tst_dmatrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_r3_rotation.py to tst_r3_rotation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_clustering.py to tst_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_quadrature.py to tst_quadrature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_angle_derivative.py to tst_angle_derivative.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py to tst_fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py to tst_orthonormal_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py to tst_uniform_rotation_matrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_line_search.py to tst_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_peak.py to tst_fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_tetrahedron.py to tst_tetrahedron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_bessel.py to tst_bessel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_similarity_indices.py to tst_similarity_indices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_periodogram.py to tst_periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_math.py to tst_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_100_13.py to des_3_100_13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_multivariate_moments.py to tst_multivariate_moments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/besselk.py to besselk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/minimum_covering_ellipsoid.py to minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike.py to tst_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/lefebvre.py to lefebvre.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/undirected_graph.py to undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/multiple_superposition.py to multiple_superposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/incremental_SO3_sampling.py to incremental_SO3_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/spe.py to spe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/periodogram.py to periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_240_21.py to des_3_240_21.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_so3_lie_algebra.py to tst_so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/chebyshev_lsq_fit.py to chebyshev_lsq_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/zernike_align_fft.py to zernike_align_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/cubic_spline.py to cubic_spline.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sphere_sphere_intersection.py to sphere_sphere_intersection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_400.py to fliege_mayer_400.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/distributions.py to distributions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gumbel.py to gumbel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/breakpoint.py to breakpoint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_peak.py to fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sieve_of_eratosthenes.py to sieve_of_eratosthenes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/so3_lie_algebra.py to so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/curve_fitting.py to curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike_mom.py to tst_zernike_mom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian.py to gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_bessel_zeros.py to tst_bessel_zeros.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/clustering.py to clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_undirected_graph.py to tst_undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py to fliege_mayer_900_ylm.cpython-312.pyc /usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py:1: SyntaxWarning: invalid escape sequence '\i' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/euler_angles.py to euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_quadratic_function.py to fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/farey.py to farey.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/scale_curves.py to scale_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/genetic_algorithm_with_mp.py to genetic_algorithm_with_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/svd.py to svd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/eigensystem.py to eigensystem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/householder.py to householder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/bounds.py to bounds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py to realsymmetricpseudoinverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/reparams.py to reparams.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/minimizer.py to minimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/twisted_gaussian.py to twisted_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/compulsory.py to compulsory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/min_logging.py to min_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/auxiliary.py to auxiliary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/refinebase.py to refinebase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/single.py to single.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_rigidity.py to tst_rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity.py to rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/test_cases_tardy_pdb.py to test_cases_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py to tst_tardy_tree_find_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree.py to tst_tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py to rigidity_matrix_symbolic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tardy_tree.py to tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py to tst_func_free_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py to tst_lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py to tst_mpi_split_evaluator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_curvatures.py to tst_curvatures.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/regular_grid_on_unit_sphere.py to regular_grid_on_unit_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cubicle_neighbors.py to cubicle_neighbors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/lbfgs_fem.py to lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py to generate_operator_traits_builtin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py to generate_operator_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_algebras.py to generate_algebras.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py to generate_std_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py to operator_functor_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_reductions.py to generate_reductions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_apply.py to generate_apply.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minimizers.py to minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/direct_search_simulated_annealing.py to direct_search_simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/fftpack.py to fftpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/shared.py to shared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_vector.py to tst_vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/vector.py to vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_set.py to tst_set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/set.py to set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_map.py to tst_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py to tst_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py to tst_free_motion_hard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py to free_motion_reference_impl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_simulation.py to test_simulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py to wx_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_molecules.py to wx_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py to tst_featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_singular.py to tst_singular.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_utils.py to test_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py to wx_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py to tst_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py to tst_spherical_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_molecules.py to tst_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_basic.py to tst_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/make_bundles.py to make_bundles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/wx_tardy.py to wx_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/body_lib.py to body_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py to tst_energy_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_tardy.py to tst_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/spatial_lib.py to spatial_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/tst_iso_surface.py to tst_iso_surface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/smoothing.py to smoothing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cross_entropy.py to cross_entropy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/golden_section_search.py to golden_section_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/row_echelon.py to row_echelon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/differential_evolution.py to differential_evolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minpack.py to minpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgsb.py to lbfgsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/simplex.py to simplex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/isoform.py to isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/simulate.py to simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_support.py to progress_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/split_pickles.py to split_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_utils.py to progress_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/ui_server.py to ui_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_in_gui.py to plot_run_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/get_hit_timestamps.py to get_hit_timestamps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats.py to plot_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_isoform_cloud.py to plot_isoform_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud_from_experiments.py to plot_uc_cloud_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/xfel_gui_launch.py to xfel_gui_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py to plot_spotfinder_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_from_experiments.py to plot_run_stats_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud.py to plot_uc_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/print_run_stats.py to print_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_reflection_stats.py to plot_reflection_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_scraper.py to spotfinder_scraper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/run_stats_plotter.py to run_stats_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_controls.py to xfel_gui_controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_plotter.py to spotfinder_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_init.py to xfel_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/submission_tracker.py to submission_tracker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py to xfel_gui_plotter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:393: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:395: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:397: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/tooltips.py to tooltips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/timeit.py to timeit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_dialogs.py to xfel_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/phil_patch.py to phil_patch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/stats.py to stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/trial.py to trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dxtbx_db.py to dxtbx_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/frame_logging.py to frame_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/xfel_db.py to xfel_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/experiment.py to experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/job.py to job.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/rungroup.py to rungroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/tag.py to tag.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py to merging_log_scraper.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:106: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:189: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/task.py to task.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/shifter_templates.py to shifter_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/test_3_gaussian.py to test_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/fit_3_gaussian.py to fit_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/fxs.py to fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_index.py to mpi_fxs_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_calib.py to mpi_fxs_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_c2.py to mpi_fxs_c2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_tbx.py to pnccd_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_launch.py to mpi_fxs_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_mask.py to mpi_fxs_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_hit.py to pnccd_hit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_bg.py to mpi_fxs_bg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/mono_treatment.py to mono_treatment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/max_like_pos_neg.py to max_like_pos_neg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pyana.py to cxi_pyana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_circular_gain_mask.py to cspad_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_apply_metrology.py to cxi_apply_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_shifts.py to cspad_detector_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence2.py to cspad_detector_congruence2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map_cbf.py to convert_gain_map_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_extractor.py to frame_extractor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/list_db_metadata.py to list_db_metadata.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cbf_average.py to cbf_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_optical2cbfheader.py to cxi_optical2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_psana.py to cxi_psana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pbs.py to cxi_pbs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_lsf.py to cxi_lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants.py to quadrants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/print_pickle.py to print_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_merge.py to cxi_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_calibdir2cbfheader.py to cxi_calibdir2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_dials_mask.py to make_dials_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_generate_circular_gain_mask.py to cxi_generate_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_mpi_submit.py to cxi_mpi_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/overlay_spectra.py to overlay_spectra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_json_to_cbf_def.py to experiment_json_to_cbf_def.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_bar.py to xpp_progress_bar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_spots.py to cxi_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/stills_merge.py to stills_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_manager.py to experiment_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_process.py to xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_isoform.py to xpp_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/recompute_mosaicity.py to recompute_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py to cxi_stream_to_pickle.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:41: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:42: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:45: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:48: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:51: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/plot_to_subpixel.py to plot_to_subpixel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cspad_pinwheel.py to cxi_cspad_pinwheel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_dump.py to xtc_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/auto_submit.py to auto_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_simulate.py to xpp_simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map.py to convert_gain_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trial_stats.py to trial_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mar_mask.py to make_mar_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_detector_format_versions.py to cxi_detector_format_versions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py to detector_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1124: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1126: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1266: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1267: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1268: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1294: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1295: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1296: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_slaccalib2cbfheader.py to cxi_slaccalib2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/beamcenter.py to beamcenter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/runs_sentinel.py to runs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mask.py to make_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/get_next_trial_id.py to get_next_trial_id.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jobs_sentinel.py to jobs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/find_highres_shots.py to find_highres_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_view.py to cxi_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_index.py to cxi_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py to experiment_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py:203: SyntaxWarning: invalid escape sequence '\D' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/striping.py to striping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xmerge.py to cxi_xmerge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_parameters.py to cxi_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/or_mask.py to or_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jungfrau_metrics.py to jungfrau_metrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/smooth_spectrum.py to smooth_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_trials.py to monitor_trials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/subtract_background.py to subtract_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_calibration.py to fee_calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/launch_fxs.py to launch_fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xfel_process.py to xfel_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_detail.py to xpp_progress_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/FEE_average_plot.py to FEE_average_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_view.py to fee_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_unpickler.py to frame_unpickler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xtc_process.py to cxi_xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cctbx_integration_pickle_viewer.py to cctbx_integration_pickle_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trumpet_plots.py to trumpet_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cbfheader2slaccalib.py to cxi_cbfheader2slaccalib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/h5_average.py to h5_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence.py to cspad_detector_congruence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/riso.py to riso.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_detectors.py to monitor_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/calc_gain_ratio.py to calc_gain_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_plotcv.py to cxi_plotcv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/filter_experiments_by_rmsd.py to filter_experiments_by_rmsd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/upload_mtz.py to upload_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pickle2cbf.py to cxi_pickle2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/mpi_average.py to mpi_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_display_metrology.py to cxi_display_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_cbf_metrology.py to cspad_cbf_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/view_pixel_histograms.py to view_pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_diff.py to cxi_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_statistics.py to cspad_detector_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants_cbf.py to quadrants_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/absorption.py to absorption.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/general_fcalc.py to general_fcalc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/mpi_integrate.py to mpi_integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database.py to merging_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_sqlite3.py to merging_database_sqlite3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_fs.py to merging_database_fs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_flex.py to merging_database_flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/predictions_to_edges.py to predictions_to_edges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/experiment_scaler.py to experiment_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/merger.py to merger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/experiment_filter.py to experiment_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/reflection_filter.py to reflection_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/worker.py to worker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/token_passing_left_right.py to token_passing_left_right.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_reference.py to reindex_to_reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_abc.py to reindex_to_abc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/compare_results.py to compare_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/aux_cosym.py to aux_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/df_cosym.py to df_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym_tranch_align.py to cosym_tranch_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym.py to cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/polarization.py to polarization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_cosym.py to reindex_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_helper.py to mpi_helper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/application.py to application.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/resolution_binner.py to resolution_binner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/crystal_model.py to crystal_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/group_reflections.py to group_reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/integrate.py to integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py to intensity_resolution_statistics_cxi.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py:350: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/beam_statistics.py to beam_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_histogram.py to intensity_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics.py to intensity_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/experiment_resolution_statistics.py to experiment_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/unit_cell_statistics.py to unit_cell_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/load_balancer.py to load_balancer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/data_counter.py to data_counter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/memory_usage.py to memory_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs.py to postrefinement_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs2.py to postrefinement_rs2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_load_calculator.py to file_load_calculator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_loader.py to file_loader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_lister.py to file_lister.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/reflection_table_utils.py to reflection_table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_sr.py to error_modifier_sr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ha14.py to error_modifier_ha14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ev11.py to error_modifier_ev11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/cell_listing.py to cell_listing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/lunus.py to lunus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/phil_validation.py to phil_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine.py to sdfac_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/error_modeler_base.py to error_modeler_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate.py to sdfac_propagate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/errors_from_residuals.py to errors_from_residuals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/reduced_chi_squared.py to reduced_chi_squared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py to sdfac_propagate_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py to sdfac_refine_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py to sdfac_refine_levmar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark3.py to mark3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py to flatfile.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1022: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1024: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1026: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1028: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/panel_fitting.py to panel_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark0.py to mark0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark1.py to mark1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/quadrant.py to quadrant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark10.py to mark10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/read_geom.py to read_geom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/write_composite_image.py to write_composite_image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_from_defs.py to agipd_from_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_cxigeom2nexus.py to agipd_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/psana_cctbx.py to psana_cctbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/cctbx_xfel_installer.py to cctbx_xfel_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/reflection_length.py to reflection_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/image_pickle_locator.py to image_pickle_locator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/mp.py to mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/kapton_2019_correction_frame_frame_plugin.py to kapton_2019_correction_frame_frame_plugin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_pickle_reader.py to dials_pickle_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_file_matcher.py to dials_file_matcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/split_detector.py to split_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/jf4m_geom2nexus.py to jf4m_geom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/average_spots.py to average_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py to mod_spectrum_filter_remote_only.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_average.py to mod_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_ledge.py to mod_ledge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/rayonix_tbx.py to rayonix_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py to mod_filter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:52: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:53: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/average_tbx.py to average_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_param.py to mod_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_illumination_filter.py to mod_illumination_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_pulnix_dump.py to mod_pulnix_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_view.py to mod_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump_bitmap.py to mod_dump_bitmap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hitfind.py to mod_hitfind.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/pixel_histograms.py to pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_xes.py to mod_xes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py to mod_spectrum_filter_v2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_mar.py to mod_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/hitfinder_tbx.py to hitfinder_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump.py to mod_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_radial_average.py to mod_radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_image_dict.py to mod_image_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/display_calib.py to display_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/cspad_tbx.py to cspad_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hdf5.py to mod_hdf5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_code.py to mod_event_code.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter.py to mod_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_info.py to mod_event_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/common_mode.py to common_mode.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/parse_calib.py to parse_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_daq_status.py to mod_daq_status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_faster_histograms.py to xes_faster_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py to mod_onecolor_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_hybrid_rs.py to postrefinement_hybrid_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/spectra_filter.py to spectra_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_spots.py to display_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/einsle.py to einsle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/integrate_image_api.py to integrate_image_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/merging_utils.py to merging_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_legacy_rs.py to postrefinement_legacy_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py to cxi_cc.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py:132: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/data_utils.py to data_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/strong_zulu.py to strong_zulu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/status_plot.py to status_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/trials_plot.py to trials_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/wx_detectors.py to wx_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/trumpet_plot.py to trumpet_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_updated_rs.py to postrefinement_updated_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_powder_arcs.py to display_powder_arcs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/completeness_plot.py to completeness_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_factory.py to postrefinement_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/test_cluster.py to test_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/Cluster.py to Cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/SingleFrame.py to SingleFrame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/components.py to components.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/multiproc_temp_parame_opt.py to multiproc_temp_parame_opt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/graph.py to graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/parameter_optimizer.py to parameter_optimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/xfel_small_cell_process.py to xfel_small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_index.py to small_cell_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/powder_from_spots.py to powder_from_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot.py to cake_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_process.py to small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot_prep.py to cake_plot_prep.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/candidate_cells.py to candidate_cells.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/powder_util.py to powder_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/small_cell.py to small_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/solve_orientation.py to solve_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/write_orientation_arrows.py to write_orientation_arrows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/sync_jf16m_geometry.py to sync_jf16m_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/jf16m_cxigeom2nexus.py to jf16m_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/metrology2phil.py to metrology2phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/cspad_cbf_tbx.py to cspad_cbf_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/simulate_partial_data.py to simulate_partial_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/singleframe.py to singleframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/api.py to api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_per_frame_wilson.py to cluster_per_frame_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_unit_cell.py to cluster_unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_visualise_orientations.py to cluster_visualise_orientations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_42.py to cluster_42.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_intensity_statistics.py to cluster_intensity_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster_groups.py to cluster_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/exercise_compression.py to exercise_compression.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/dump.py to dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/hybrid_times.py to hybrid_times.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/double_overflow.py to double_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py to nested_cpp_loops_with_check_signals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/divide_by_zero.py to divide_by_zero.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/inexact.py to inexact.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_platform_info.py to show_platform_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/int_overflow.py to int_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/gcd.py to gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/lcm.py to lcm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/segmentation_fault.py to segmentation_fault.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/std_pair.py to std_pair.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/tuple.py to tuple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/rational.py to rational.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/python.py to python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py to connected_component_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/clustering_algorithm.py to clustering_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/utility.py to utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py to min_cut_max_flow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/maximum_clique.py to maximum_clique.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py to minimum_cut_enumerate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/metric.py to metric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py to graph_structure_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/breadth_first_search.py to breadth_first_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/mod_isoform_cluster.py to mod_isoform_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/comparestats.py to comparestats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/spot_param_visualizer.py to spot_param_visualizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/ray_trace.py to ray_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/r_mtz_mtz.py to r_mtz_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/view_fineslices.py to view_fineslices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/iotacc.py to iotacc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/explore_twin_operators.py to explore_twin_operators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/cluster_isoform.py to cluster_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_run.py to mpi_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/print_integration_pickle.py to print_integration_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/frame_extractor_by_scan.py to frame_extractor_by_scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/compare_solution_pickles.py to compare_solution_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_scale.py to mpi_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plot_energy_spectrum.py to plot_energy_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/prime_gui.py to prime_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/solve_indexing_ambiguity.py to solve_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_path_indexing_ambiguity.py to change_path_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plotstats.py to plotstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/viewstats.py to viewstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_kmeans.py to mod_kmeans.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_indexing_ambiguity.py to mod_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py to mod_gui_frames.cpython-312.pyc /usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py:750: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_plotter.py to mod_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_outlier.py to mod_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_partiality.py to mod_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_dialogs.py to mod_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_pdb.py to mod_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_mx.py to mod_mx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_merge_data.py to mod_merge_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_run.py to mod_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_misc.py to mod_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_perf.py to mod_perf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_results.py to mod_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_leastsqr.py to mod_leastsqr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_threads.py to mod_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs_partiality.py to mod_lbfgs_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/tst_kokkos_lib.py to tst_kokkos_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py to tst_gpu_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_shoeboxes.py to tst_shoeboxes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_exafel_api.py to tst_exafel_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py to tst_nanoBragg_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py to tst_gaussian_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_input.py to nanoBragg_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py to nanoBragg_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py to nanoBragg_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py to nanoBragg_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py to tst_anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py to tst_nanoBragg_multipanel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py to tst_nanoBragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py to nanoBragg_beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py to anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py to tst_nanoBragg_pilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py to tst_gaussian_mosaicity2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py to tst_nanoBragg_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py to nanoBragg_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py to nanoBragg_gui_frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py to tst_gauss_argchk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_multisource_background.py to tst_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py to tst_nanoBragg_cbf_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/sim_data.py to sim_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/predictions.py to predictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py to FormatHDF5AttributeGeometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/forward_models.py to forward_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/parameters.py to parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py to stage_two_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py to orthorhombic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py to tetragonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py to monoclinic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py to hexagonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/base_refiner.py to base_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/attr_list.py to attr_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py to hopper_ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/device.py to device.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_io.py to hopper_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/parameter_errors.py to parameter_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/prep_stage2_input.py to prep_stage2_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py to ensemble_refine_launcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/psf.py to psf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_utils.py to hopper_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/stage_two_utils.py to stage_two_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_websocket.py to tst_websocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py to tst_HKLviewerQtGuiSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py to tst_HKLviewerQtGuiBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_hklinfo.py to tst_hklinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py to tst_HKLviewerOSbrowserSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tests_HKLviewer.py to tests_HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py to tst_HKLviewerOSbrowserBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/compare_datasets.py to compare_datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/visualize_r_factors.py to visualize_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/model_viewer.py to model_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/qttbx.view_structure.py to qttbx.view_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py to make_install_HKLviewer_ChimeraX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/hklview.py to hklview.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/multiplicity_viewer.py to multiplicity_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/xray_structure_viewer.py to xray_structure_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/map_viewer.py to map_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklview_frame.py to hklview_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py2.py to webbrowser_messenger_py2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtricorder_runner.py to xtricorder_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/cmdlineframes.py to cmdlineframes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/helpers.py to helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py3.py to webbrowser_messenger_py3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/display2.py to display2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/default_user_preset_buttons.py to default_user_preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtriage_runner.py to xtriage_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklviewer_gui.py to hklviewer_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/preset_buttons.py to preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/tool.py to tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt.py to qt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/jsview_3d.py to jsview_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt_chromium_check.py to qt_chromium_check.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/frames.py to frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_2d.py to view_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/comparison.py to comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_3d.py to view_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/development.py to development.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_anomrefine.py to tst_commandline_anomrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_refine.py to tst_commandline_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/conftest.py to conftest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/absolute_structure.py to absolute_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/benchmark_refinement.py to benchmark_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/masks.py to masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/anom_refine.py to anom_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_disorder.py to test_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_direction.py to test_direction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_occupancies.py to test_occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py to tst_constrained_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_same_group.py to test_same_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py to tst_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py to tst_reparametrisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_rigid.py to test_rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py to hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/fpfdp.py to fpfdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/site.py to site.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/rigid.py to rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py to origin_fixing_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/adp_restraints.py to adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/least_squares.py to least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py to tst_charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py to tst_ab_initio_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/charge_flipping.py to charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_convert_free_to_work.py to mtz_convert_free_to_work.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py to recalculate_phenix_refine_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/direct_methods_light.py to direct_methods_light.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_split_chains.py to pdb_split_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_hierarchy.py to pdb_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py to shelx_latt_sym_to_space_group_symbol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_to_map_simple.py to pdb_to_map_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/tst_mtz_free_flipper.py to tst_mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_symmetry_copies.py to pdb_symmetry_copies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py to pdb_tardy_conf_sampling_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/libtbx_phil_examples.py to libtbx_phil_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py to pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_shake.py to pdb_shake.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/prepare_model_for_rsr.py to prepare_model_for_rsr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_free_flipper.py to mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/symmetry.py to symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py to tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_sort_atoms.py to tst_sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_segids.py to tst_mmcif_segids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_2.py to tst_map_model_manager_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_box_around_molecule.py to tst_box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phases.py to tst_phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_extract_xtal_data.py to tst_extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_parser.py to tst_simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_3.py to tst_map_model_manager_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py to tst_pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_data_cif.py to tst_split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py to tst_map_model_manager_tls_from_map_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_utils.py to tst_reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py to tst_hierarchy_long_resname_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py to tst_hierarchy_copy_select.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_show_systematic_absences.py to tst_show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py to tst_hierarchy_long_resname_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py to tst_hierarchy_occupancies_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_1.py to tst_cif_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_models.py to tst_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_tools.py to tst_map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py to tst_hierarchy_long_chain_ids_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py to tst_cif_as_pdb_1atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py to tst_map_model_manager_half_map_sharpening_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_lattice_symmetry.py to tst_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py to tst_hierarchy_forward_compatible_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_link_records.py to tst_pdb_link_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_cif.py to tst_pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py to tst_mmcif_to_from_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py to tst_hierarchy_long_resname_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_map_coefficients.py to tst_simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_bioinformatics.py to tst_bioinformatics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_input.py to tst_ncs_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs.py to tst_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py to tst_ncs_user_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py to tst_ncs_without_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py to tst_mmcif_biomt_reduction_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py to tst_ncs_search_broken_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py to tst_ncs_reordered_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py to tst_ncs_groups_preprocessing.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py:409: SyntaxWarning: invalid escape sequence '\P' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py to tst_ncs_search_ligs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py to tst_mtrix_biomt_cmdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_atom_selections_10k.py to tst_atom_selections_10k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cli_parser.py to tst_cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_multimodel.py to tst_mmcif_multimodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_group_rounding.py to tst_group_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_fetch.py to tst_fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py to tst_selected_hierarchy_flip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_fasta.py to tst_pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager_wrapping.py to tst_map_manager_wrapping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mtz_as_cif.py to tst_mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager.py to tst_map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_patterson.py to tst_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py to tst_hierarchy_long_resname_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py to tst_hierarchy_pdb_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py to tst_export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_add_conformations.py to tst_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_manager.py to tst_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_miller_sort_asu.py to tst_miller_sort_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_editor.py to tst_reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_merging_statistics.py to tst_merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_wildcard.py to tst_wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py to tst_map_model_manager_external_sharpening_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_generate_n_char_string.py to tst_generate_n_char_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_reader.py to tst_reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py to tst_crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py to tst_map_model_manager_model_sharpening_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py to tst_map_model_manager_call_consistency.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py to tst_pdb_cif_inputs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_poscar.py to tst_poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_4.py to tst_map_model_manager_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_symmetry.py to tst_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reindex.py to tst_reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_id_str.py to tst_hierarchy_id_str.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_plots.py to tst_data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_all_chain_ids.py to tst_all_chain_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_restraints_merge.py to tst_restraints_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phil.py to tst_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_file_reader.py to tst_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_csv_utils.py to tst_csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager.py to tst_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_xray_scale.py to tst_xray_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/hklf.py to hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_lex_parse_build.py to tst_lex_parse_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/write_ins.py to write_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fcf.py to fcf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/writer.py to writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tokens.py to tokens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fvar_encoding.py to fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/parsers.py to parsers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/lexer.py to lexer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py to crystal_symmetry_from_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_hklf.py to tst_hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_fvar_encoding.py to tst_fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_writer.py to tst_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pymol.py to pymol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/write_pcr.py to write_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/read_pcr.py to read_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/fpfm_reader.py to fpfm_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/simple_map_coefficients.py to simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/get_pubmed_citation.py to get_pubmed_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif_as_pdb.py to cif_as_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.reflection_reader.py to cns.reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.validate.py to cif.validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_fasta.py to pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/xplor.map.show_summary.py to xplor.map.show_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/patterson_map.py to patterson_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cbf_read.py to cbf_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_xray_structure.py to cif.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py to flip_symmetric_amino_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_distances.py to show_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.b_factor_stats.py to pdb.b_factor_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py to r_free_flags_completion_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.dump_as_python.py to shelx.dump_as_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.hierarchy.py to pdb.hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/blast_pdb.py to blast_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_add_conformations.py to pdb_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.join_fragment_files.py to pdb.join_fragment_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz.dump.py to mtz.dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_get_citation.py to pdb_get_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/sort_atoms.py to sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dano_as_amplitudes.py to dano_as_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_systematic_absences.py to show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py to cns.transfer_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtrix_reconstruction.py to mtrix_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.sdb_reader.py to cns.sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_split_models.py to pdb_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.print_sequence.py to pdb.print_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_as_cns.py to r_free_flags_as_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/effective_resolution.py to effective_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_comparison.py to pdb_labels_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/detector_image_as_png.py to detector_image_as_png.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.insert_scale_records.py to pdb.insert_scale_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/export_scalepack_unmerged.py to export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.box_around_molecule.py to pdb.box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py to explore_metric_symmetry.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:339: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:341: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py to pdb.link_as_geometry_restraints_edits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.as_xray_structure.py to pdb.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_miller_arrays.py to cif.as_miller_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_statistics.py to reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_remediator.py to pdb_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_accumulation.py to r_free_flags_accumulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_xray_structure.py to shelx.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_cif.py to shelx.as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/biomt_reconstruction.py to biomt_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_diff.py to pdb_labels_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz_as_cif.py to mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/build_phil_cache.py to build_phil_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/isomorphous_difference_patterson.py to isomorphous_difference_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py to pdb.superpose_atoms_by_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/poscar_as_xray_structure.py to poscar_as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/csv_as_mtz.py to csv_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns_as_mtz.py to cns_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_show_connectivity.py to pdb_show_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py to pdb.superpose_centers_of_mass.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dtrek.to_cns.py to dtrek.to_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_plots.py to data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py to crystal_symmetry_from_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/tst_xplormap.py to tst_xplormap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif_mtz_data_labels.py to cif_mtz_data_labels.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_utils.py to crystal_symmetry_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/space_group_symbols.py to space_group_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py to crystal_symmetry_from_sdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_reader.py to sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/index_fobs_sigma_reader.py to index_fobs_sigma_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/tst_cns.py to tst_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/reflection_reader.py to reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/pdb_remarks.py to pdb_remarks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_writer.py to sdb_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/map_coefficients.py to map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/restraint.py to restraint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/ncs_spec.py to ncs_spec.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/common.py to common.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/real_map.py to real_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtrix_biomt.py to mtrix_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py to crystal_symmetry_from_ref.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py to dtrek_symmetry_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/reflnlist_reader.py to reflnlist_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/simple_parser.py to simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/reflections.py to reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/models.py to models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/cif_conversions.py to cif_conversions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/import_data_and_flags.py to import_data_and_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_pdb.py to tst_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_name_interpretation.py to atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py to utils.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:7: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:45: SyntaxWarning: invalid escape sequence '\/' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdbe.py to pdbe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py to tst_extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py to forward_compatible_pdb_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy.py to tst_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/web_service_api.py to web_service_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py to tst_mmcif_hierarchy_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/aa_utils.py to aa_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py to tst_mmcif_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py to tst_atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection.py to tst_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py to tst_rna_dna_atom_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py to crystal_symmetry_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hierarchy.py to hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_rna_dna_names.py to modified_rna_dna_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure.py to tst_secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/misc_records_output.py to misc_records_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/remediator.py to remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/tst_remediator.py to tst_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py to tst_hierarchy_atom_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/cryst1_interpretation.py to cryst1_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py to extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rna_dna_detection.py to rna_dna_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_2_interpretation.py to remark_2_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/fetch.py to fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/experiment_type.py to experiment_type.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/records.py to records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py to pdb_v3_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hybrid_36.py to hybrid_36.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif.py to tst_mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_aa_names.py to modified_aa_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/secondary_structure.py to secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/amino_acid_codes.py to amino_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py to tst_hierarchy_flip_symmetric_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/mmcif.py to mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure_2.py to tst_secondary_structure_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_3_interpretation.py to remark_3_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py to tst_read_mtrix_records_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/nucleic_acid_codes.py to nucleic_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection_string.py to tst_atom_selection_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py to tst_hierarchy_flip_symmetric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rcsb.py to rcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/download.py to download.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_290_interpretation.py to remark_290_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/csv_utils.py to csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/extract_xtal_data.py to extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/format.py to format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_model_manager.py to map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py to ncbi_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/homologues.py to homologues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ebi_wu_blast_xml.py to ebi_wu_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/xmlbuild.py to xmlbuild.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/local_blast.py to local_blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pdb_info.py to pdb_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/alignment_as_hsearch.py to alignment_as_hsearch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/wildcard.py to wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_manager.py to map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders_depending_on_smtbx.py to builders_depending_on_smtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/poscar.py to poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_debug_write.py to tst_debug_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/noir.py to noir.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger.py to eiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_mar.py to test_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/marIP.py to marIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc.py to adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger_minicbf.py to eiger_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/dtrek.py to dtrek.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/active_area_filter.py to active_area_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/bruker.py to bruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_module.py to adsc_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py to tst_cbf_comp_read_meth.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/edf.py to edf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_py_cbf.py to tst_py_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_minicbf.py to adsc_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/mar.py to mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/beam_center_convention.py to beam_center_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_adsc.py to tst_adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/detectorbase.py to detectorbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cspad_detector_formats.py to cspad_detector_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_detectors.py to tst_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/camera_convention.py to camera_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py to endstation_max_iv_trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/config_detector.py to config_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation.py to endstation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/spot_xy_convention.py to spot_xy_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxisbase.py to raxisbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_raxis2.py to test_raxis2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_slice.py to pilatus_slice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_minicbf.py to pilatus_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/macscience.py to macscience.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/filters.py to filters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/saturn.py to saturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis.py to raxis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis_nonsquare.py to raxis_nonsquare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/url_support.py to url_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/npy.py to npy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/hamamatsu.py to hamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cbf.py to cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/image_from_http_request.py to image_from_http_request.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/strudat.py to strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/tst_strudat.py to tst_strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_utils.py to reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/box_around_molecule.py to box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py to tst_extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py to crystal_symmetry_from_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_unmerged.py to tst_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_miller_dict.py to tst_miller_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_dano.py to tst_dano.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py to extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phases.py to phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/blank_cbf.py to blank_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/integrate_hkl.py to integrate_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/read_ascii.py to read_ascii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xparm.py to xparm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/gain_cbf.py to gain_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_inp.py to xds_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_cbf.py to xds_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/correction.py to correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/spot_xds.py to spot_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/logfiles.py to logfiles.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:19: SyntaxWarning: invalid escape sequence '\%' /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:474: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/cod_tools.py to cod_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraint_file_merge.py to restraint_file_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py to crystal_symmetry_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cli_parser.py to cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ranges.py to ranges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/space_group_dictionary.py to space_group_dictionary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/no_merge_original_index.py to no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py to tst_no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_merge.py to tst_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating cctbx.egg-info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt writing manifest file 'cctbx.egg-info/SOURCES.txt' reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' Copying cctbx.egg-info to /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx-2023.12.egg-info Skipping SOURCES.txt running install_scripts # install the dxtbx python modules dh_auto_install --sourcedirectory=dxtbx install -m0755 -d /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.12 --dir dxtbx --dest-dir /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root '/<>/debian/tmp' Found 20 dxtbx dispatchers Found 134 Format classes running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib copying /<>/.pybuild/cpython3_3.12/build/scitbx_iso_surface_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/max_like.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/energy_scan_notch_finder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/construct_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/jungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/rayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/cspad_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/cspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/xtc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/dxtbx/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_nexus_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/flumpy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_model_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/goniometer_shadow_masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SConscript -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SmarGonShadowMask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python/ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/py.typed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_matching_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/debug_memory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/plot_detector_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/overload.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image2pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/detector_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/install_format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_header.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/display_parallax_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/saturation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_matching_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/read_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/depends_on.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_mask_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_image_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/datablock.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/model_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/kappa_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/virtual_panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/multi_axis_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel_data.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/spectrum.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/pixel_to_millimeter.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/parallax_correction.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/spectrum.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/crystal.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/detector.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment_list.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pickle_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan_helpers.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/model_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/parallax_correction.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pixel_to_millimeter.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/beam.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/panel.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/kappa_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/to_from_dict.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/multi_axis_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/ray_intersection.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/compare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_masking_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/filename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/load.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_imageset_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/to_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/resolution_corners.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache_controller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/sequence_filenames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/flumpy.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/ext.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/imageset_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCNoDateStamp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImageLazy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerChessID7B2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSNAPSID19.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatGatanDM4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatROD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI51.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPY.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerPhoton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Lambda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN926.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/README.md -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMini.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5PAL.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCmlfsom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISII.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniADSCHF4M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMV.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusXXX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS12M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN928.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN442.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYmultitile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCJungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMRC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN905.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCDBG.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatEDFALS733.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPetraP14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLSI19_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigaku.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerFixedChi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTileHierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXIS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI7d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16MI03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISIVSpring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN457.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN915.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/cbf_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixESRF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN445.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI71.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/image_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/nexus_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVCMOS1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatDIP2030b.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMarIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI61.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI32.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauHack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVJHSim.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCEpix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecified.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullByteOffset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauExt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixXPP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxED.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI41.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusTimepix2M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXDS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecifiedStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaMPCCD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCMultipleDetectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nxmx_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Sacla.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFull.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVTimePix_SU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSER.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN920.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVNOIR.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnNoTS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/rotate_and_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/ref_pickle_double_buffered.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/CMakeLists.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/error.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/detectors.lib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_flumpy.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/cma_es_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_shared_types_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simage_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_wavelengths_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/tst_spherical_bessel_jn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/tst_direct_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reduce_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_pair_interaction_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/annlib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_wigner_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_fftpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_rational_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_asymmetric_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_sphere_surface_sampling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_metric_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/sweep_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/find_active_area.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/sphere_formulae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/close_spots_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/imagefiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/multipart_encoder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/adsc_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/pilatus_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_dials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_client_push.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/bcsb_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_is_alive.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/general_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/specific_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_bcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/method2_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice_nztt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/spotreporter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/stats_distl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_run3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/wrappers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/proq2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/invariant_domain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/make_fake_anomalous_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ligand_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_scattering_type_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cis_trans_peptide_link.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_maps_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_statistics_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_metal_link_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_isomorphous_difference_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_arrows_on_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_flipping_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_special_term_at_end.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_apply_cif_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_models_to_from_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_dedeuterate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_utils_merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_get_vdw_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_coeffs_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search_flips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_loop_closure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ss_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_no_cryst1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ml_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_h_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_schrodinger_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_dynamics_cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_command_line_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_alignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_ccs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_psi_phi_extraction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_refinement_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_get_t_scheme.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geo_min_restraints_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_chain_break.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_type_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sequence_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_probe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/skew_kurt_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/tst_hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/data_filtering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/rotamer_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/sample_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/all_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/find_ss_from_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/proteins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_segid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/secondary_structure_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/nucleic_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_insertion_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/pair_interaction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_05.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_max_lik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/max_like_non_uniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/tst_mmtbx_probe_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/Helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/AtomTypes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_sa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/ensemble_cd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/how_to.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/regular_helix_definitions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/parallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_fingerprints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/check_cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_svl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/sf4_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/histidines.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_base_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/altloc_weighting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hpdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/bond_angle_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/metal_coordination_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/testing_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/LinkedResidues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_hpdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/partial_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/anneal_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/distance_difference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sisa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reciprocal_space_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/monomer_library.comp_as_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_r_factors_by_shell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_suspicious_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/verify_mon_lib_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/apply_ncs_to_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/simulate_low_res_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_peaks_holes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development.aev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/estimate_bijvoet_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ssm_rmsd_for_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cdl_lookup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/super.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/f000.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer_score.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/search_pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fake_f_obs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_screen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compute_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_tls_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/kinemage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_model_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/r_factor_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_static_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compare_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/strip_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_residue_in_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_diff_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/get_related_ensemble.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maximum_entropy_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chains_as_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cif_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fetch_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_view_ad_hoc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mon_lib_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rama_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_rotarama_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/models_as_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_model_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_cablam_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/perigee.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_H_cl_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_polygon_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/kick.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/mtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_find_region_max_value.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_arguments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_keep_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/run_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_symmetry_SS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_do_flips_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/convert_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/convert_from_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_others_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ensembles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/fav_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbd_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_PRO_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comprehensive_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/kinemage_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/cif_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/external.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/base_qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/orca_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_restraints_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/c_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/mopac_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Movers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/InteractionGraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Optimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/tncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/cartesian_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/find_peaks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/chemistry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_basics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/electrons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/hierarchy_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/rdkit_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip_tasks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_aniso_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/kbu_refinery.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/f_model_all_scales.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/plot_weights.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/print_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_occupancy_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/adp_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/orca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/wx_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/targets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_fit_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_real_space_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/inspect_tardy_trajectory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/flip_peptide_side_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/weights_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/energy_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/explode_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_small_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/individual_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/twin_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/probabalistic_detwinning.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/tst_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/shared_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/clash.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/asa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/altloc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/topology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/sphere_surface_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/rotatable_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/grid2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/tst_switch_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/ntc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_approx_zn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca_svm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/identify.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_symmetry_axis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/tst_classifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/dump_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/halides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/resolve_resources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitealyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/transdent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninput.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/diangle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/mainchain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/dualparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenamedefs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/berkeley_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/ccd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/starting_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/custom_gm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/lifi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/tst_ias.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm15.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm12.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/decompose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/ladp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_optimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_ga.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_superpose_ideal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/hydrogen_restrictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conv_v2_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_chg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_correct_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_all_cif_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_mixins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conformation_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_deuterium_terminii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_paral_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_neutron_distance.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_metal_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_protein_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/bondlength_defaults.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/correct_hydrogen_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_chiral_values.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_carbo_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_asu_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/find.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/parameterization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/riding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/build_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_minimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/reduce_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_scoring.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rolling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absolute_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pair_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage_twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/rip_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sir_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/random_omit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/thorough_outlier_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/siras_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pre_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/make_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_sigmaa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/data_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/basic_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absence_likelihood.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_rejection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twmad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/ta_alpha_beta_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sigmaa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/massage_twin_detwin_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/map_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ensemble_ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/nqh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval_deprecated.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/n_dim_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/sidechain_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_min_cut_max_flow_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_python_streambuf_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_single_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_utility_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_masking_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_rigid_body_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cma_es/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/tst_cma_es.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/cma_es_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/scitbx_minpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_observations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_cartesian_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_imageset_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/self_match.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/sample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_bcr_bcr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_orientation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_clash_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_building_loop_closure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_least_squares_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_viewer_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_connected_component_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_dtrek_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_hough_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_indexing_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_random_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx/fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_motion_on_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/quadrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_leapmotion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl_managed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/try_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_functions_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewers_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_cube.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_ellipsoids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_fonts_ucs_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_ellipsoids_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/extract_opengl_specs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/glu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_defines_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_scene.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/iotbx_ccp4_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/slip_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/example_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/ersatz_misset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/instrument_specifics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/tst_detector_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions_idx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/compare_mosflm_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2a.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/phil_preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/scope.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/tst_sublattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/drivers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/pixels3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_wrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/results_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/integration_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/slip_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/dual_resolution_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/simple_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/dials_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/stills_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/spot_markup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_ewald_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_predict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/do_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_dataset1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_auto_monoscan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_labelit_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_spotfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/integrate_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/refine_uc_cr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/tst_xfel1_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_pdf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/stats_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/spot_shape.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/speckfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/oscillation_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/pixel_spread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/fit_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/silicon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/force_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/nearest_neighbor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/test_dps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/subgroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/sgtbx_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/parameter_reduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/g_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/example_frame_plugin_hidden.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/uc_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/pyslip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/score_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/tile_generation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/ring_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_viewer_image_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/tst_coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/cell_assessment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/lepage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/zuoreduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/constrainment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/tst_iotbx_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/wxtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/checklistctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/layout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/symmetry_dialog.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/listeditor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plot_anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/inspect_r_free_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/wxpython.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/show_file_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/anomalous_differences_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/loggraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/ensemble_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/icons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/wx4_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/metallicbutton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/windows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/path_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/qstat_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/misc_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/sequence_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/segmentedctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/ints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floatctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/intctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/text_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice_multi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/numbers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/array_label.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tribool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/space_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/symop.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/boolctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/misc_ctrls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/simple_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/bitmaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/adp_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/browser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/heavy_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon_db_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/info_panels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/process_control.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/mtz_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/custom_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_henke_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_r3_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/env_config.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/log.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/introspection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/configure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/python_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/start_print_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/statistics_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/metric_prefixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/mpi4py.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_csh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_build_libtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_runtime_sources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/try_hello_world_c.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_untested.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/path_utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/git_avoid_merges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bundle_as_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/py_compile_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_modules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_host_and_user.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/nequal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/easy_qsub.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_contains_strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remote_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/scons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/extract_code_from_txt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_source_files_sorted_by_size.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/wait_for_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_ends_with.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/chunk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clean_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_dist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/epydoc_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_old_style_classes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_unzipsfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/env_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_pickled_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_sphinx_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_pythonpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_tests_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_binary_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_but_no_repr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_install_script_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_available_slots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/check_libcpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_in_repositories.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_qstat_counts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_sys_executable.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remove_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_number_of_processors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/raise_exception_for_testing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_dist_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sphinx_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_date_and_time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/analyse_code_comments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_module_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/printenv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_commands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/ipython_shell_start.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_not_show_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_repository_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_reserved_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/add_from_future_import_division.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_include_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/seconds_since_the_epoch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/parallel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_bin_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numpy_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_variable_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_full_command_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/dtrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/any2unix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_all_on_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numeric_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/prime_factors_of.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_options.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_selfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_lib_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_under_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_multicore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/complex_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/crossmingw.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileClient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/StartServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileSocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/SocketServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/gui_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/callbacks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/find_reference_cycles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_fully_buffered_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_server_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/console_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/load_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/forward_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/simplexml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/objgraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_representation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/fastentrypoints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/looping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/polling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/transfer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/submission.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/sge_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/generic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/communication.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/pbs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/remote.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/code_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mainthread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/philgen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/file_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/socket_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/parallel_for.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/shared_resource.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/cluster_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/process_pool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/job_scheduler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mp_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/thread_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/stacktrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_state.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/pytest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/xcode_build_phase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/timers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/except_Exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/wingide.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/assert_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subprocess_with_fixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/smart_open.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clusterTests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/file_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cpp_function_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/progress.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/regenerate_module_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_pkg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_base_packages.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/installer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/setup_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/write_gui_dispatcher_include.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/plus_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/make_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/rpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/package_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyplot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pkg_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_symmetry_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cootbx/validation_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/hydrogens_button.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/view_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/xmlrpc_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/interactive_edit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/watch_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/ligand_checklist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/simple_zoom_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_fp_fdp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_chemical_elements_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_tuple_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_group_matrices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/convert_ccp4_symop_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_consistency_checks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/list_non_principal_continuous_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/adp_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/maximum_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/neutron_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/change_hand_p31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/fft_map_electron_density_around_atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_distances_using_cpp_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/sub_group_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/getting_started.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_levenberg_sparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_subset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/task4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_cc_half.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_utilities.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/tst_permutations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/show_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/sigma_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/location_part.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_f_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/view_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/steve_collins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_common_sets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/f_model_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_sys_abs_equiv_space_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/lebedev_2005_perturbation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/quartz_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/symops_530.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/hirshfeld_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_primitive_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/analyze_adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/reduced_cell_two_folds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/site_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/map_skewness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/read_custom_scattering_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/van_der_waals_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/icsd_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/attenuation_coefficient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/chemical_elements.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/sasaki.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/neutron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/e_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/henke.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/e_scattering_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_approx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_section61_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/combine_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_cross_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/rez_rez_grant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/hydrogen_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_kissel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/format_gaussian_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/formula.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/tiny_pse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/covalent_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sphericity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_refine_xray_curvs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_loc_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_double_step_filtration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_krivy_gruber.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_twin_target.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_triplet_generator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_amplitude_normalisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization_failure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_merge_equivalents.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_web_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_aniso_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wilson_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_tidy_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints_cartesian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_denominators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_expand_to_p1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity_allsym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_statistics_graphs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fcalc_fft_stability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grouped_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sf_low_res_accuracy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_site_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fast_nv1995.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_lookup_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pair_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_data_manipulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reciprocal_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_asu_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_fast_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_modifications.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_is_periodic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/covariance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/reduction_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973_table_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/krivy_gruber_1976.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/iotbx_cif_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/wyckoff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/replay.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/cgi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/libtbx_help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/frac_cart.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/io_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/multiple_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_setting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/explore_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/browse_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jvx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/web_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/guide_to_notation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/dispatcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/eltbx.show_fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cctbx_test_nightly.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/find_reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/xray_structure.show.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/precession_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/space_group_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/structure_factor_timings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/form_factor_query.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/translation_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/tst_observations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradient_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/global_counters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/scatterer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_shelxl_wght_ls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observation_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_map_to_asu_isym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/linking_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/standard_cif_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_angle_derivs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_proxy_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/base_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/auto_linking_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/dmtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/rational_matrices_point_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sys_abs_equiv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/literal_description.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_pg_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/bravais_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/short_cuts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/cut_plane.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sub_lattice_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/plane_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/symbol_confidence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/adptbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/eval_iso_vs_refined.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cif_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tardy_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/pdb_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/anharmonic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_henke_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx/neutron/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/rotation_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/electron_density_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_epsilon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_hl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/github.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/direct_or_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/fmt_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/approx_amplitude_vs_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx76.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/cns_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/space_group_option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_cns_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/debug_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/structure_factor_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/random_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/multipolar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_loft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_target_and_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_ccp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_get_percentile_cutoffs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_scales_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_asymmetric_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_sharpening.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_peak_volume_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/map_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks copying /<>/.pybuild/cpython3_3.12/build/gltbx_fonts_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_maximum_clique_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fable/tokenization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/fem_include_search_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/show_calls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/insert_write_at_start_of_each_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/split.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout_compile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/simple_compilation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/intrinsics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_max_lik_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bpcx_detector_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_set_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_quadrics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_bulk_solvent_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/qttbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/chimerax.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/cctbx_covariance_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_bruker_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/exercise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_12_script_compare_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_17_script_rfactors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_8_doc_maps_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_11_script_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_13_script_ideal_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_py_from_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_2_doc_hlo_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_9_doc_maps_boxing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_1_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/mmtbx_probe_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_french_wilson_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_array_family_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_xray_scattering_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_decompose_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_gl_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reference_coordinate_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/omptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/omptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/scitbx_sparse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_uctbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_den_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_ab_initio_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_linalg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_icsd_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_merging_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_adp_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_emma_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_validation_ramachandran_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_mtz_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_neutron_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rotamer_fit_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/minimizer_comparisons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/integrating_a_weighted_sinc_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_recipe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_array_loops.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/chebyshev_lsq_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/immoptibox_ports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_grid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_linear_least_squares_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/silver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/rigid_body_refinement_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/principal_axes_of_inertia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/r3_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/dicts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/graph_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/signal_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/robust_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_robust.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/test_problems.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/tst_normal_equations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns_solving.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/tst_wigner3j.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_2d_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_cubic_equation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_halton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_exp_functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_g_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_resample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_weighted_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_dmatrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_r3_rotation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_quadrature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_angle_derivative.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_orthonormal_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_uniform_rotation_matrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_tetrahedron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_bessel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_similarity_indices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_100_13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_multivariate_moments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/besselk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/lefebvre.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/multiple_superposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/incremental_SO3_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/spe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_240_21.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/chebyshev_lsq_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/zernike_align_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/cubic_spline.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sphere_sphere_intersection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_400.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/distributions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gumbel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/breakpoint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sieve_of_eratosthenes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike_mom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_bessel_zeros.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900_ylm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/farey.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/scale_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/random/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random copying /<>/.pybuild/cpython3_3.12/build/scitbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/genetic_algorithm_with_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/svd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/eigensystem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/householder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/bounds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/realsymmetricpseudoinverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/reparams.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/minimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/twisted_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/compulsory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/min_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/auxiliary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/refinebase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/single.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/test_cases_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree_find_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity_matrix_symbolic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_func_free_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_mpi_split_evaluator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_curvatures.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/regular_grid_on_unit_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cubicle_neighbors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_algebras.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_std_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/operator_functor_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_reductions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_apply.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/direct_search_simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/fftpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib copying /<>/.pybuild/cpython3_3.12/build/scitbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/shared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion_hard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/free_motion_reference_impl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_simulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_singular.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_spherical_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/make_bundles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/wx_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/body_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_energy_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/spatial_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/tst_iso_surface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/smoothing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cross_entropy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/sparse/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse copying /<>/.pybuild/cpython3_3.12/build/scitbx/golden_section_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/row_echelon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/differential_evolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/minpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/simplex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/split_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/ui_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/get_hit_timestamps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_isoform_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/xfel_gui_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/print_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_reflection_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/run_stats_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/submission_tracker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/tooltips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/timeit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/phil_patch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dxtbx_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/frame_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/xfel_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/job.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/rungroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/tag.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/merging_log_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/task.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/shifter_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/test_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/fit_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_c2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_hit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_bg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/mono_treatment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/max_like_pos_neg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pyana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_apply_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_extractor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/list_db_metadata.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cbf_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_optical2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_psana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pbs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/print_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_calibdir2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_dials_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_generate_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_mpi_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/overlay_spectra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_json_to_cbf_def.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_bar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/stills_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/recompute_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_stream_to_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/plot_to_subpixel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cspad_pinwheel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/auto_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trial_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mar_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_detector_format_versions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/detector_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_slaccalib2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/beamcenter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/runs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/get_next_trial_id.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jobs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/find_highres_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/striping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xmerge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/or_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jungfrau_metrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/smooth_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_trials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/subtract_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/launch_fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xfel_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/FEE_average_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_unpickler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cctbx_integration_pickle_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trumpet_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cbfheader2slaccalib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/h5_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/riso.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/calc_gain_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_plotcv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/filter_experiments_by_rmsd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/upload_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pickle2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/mpi_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_display_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_cbf_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/view_pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/absorption.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/general_fcalc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/mpi_integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_fs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/predictions_to_edges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/experiment_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/merger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/experiment_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/reflection_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/worker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/token_passing_left_right.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_abc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/compare_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/aux_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/df_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym_tranch_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/polarization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_helper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/application.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/resolution_binner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/crystal_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/group_reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/beam_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/experiment_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/unit_cell_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/load_balancer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/data_counter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/memory_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_load_calculator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_loader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_lister.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/reflection_table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_sr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ha14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ev11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/cell_listing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/lunus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/phil_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/error_modeler_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/errors_from_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/reduced_chi_squared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/flatfile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/panel_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/quadrant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/read_geom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/write_composite_image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_from_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/psana_cctbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/exercise_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/util/cctbx_xfel_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/reflection_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/image_pickle_locator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/kapton_2019_correction_frame_frame_plugin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_pickle_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_file_matcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/split_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/jf4m_geom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/average_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_ledge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/rayonix_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/average_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_illumination_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_pulnix_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump_bitmap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hitfind.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_xes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/hitfinder_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_image_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/display_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/cspad_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hdf5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_code.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/common_mode.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/parse_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_daq_status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_faster_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_hybrid_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/spectra_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/einsle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/integrate_image_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/merging_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_legacy_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cxi_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/data_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/strong_zulu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/status_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/trials_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/wx_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/trumpet_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_updated_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_powder_arcs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/completeness_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/test_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/Cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/SingleFrame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/components.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/multiproc_temp_parame_opt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/parameter_optimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/xfel_small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/powder_from_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot_prep.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/candidate_cells.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/powder_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/small_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/solve_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/write_orientation_arrows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/sync_jf16m_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/jf16m_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/metrology2phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/cspad_cbf_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/simulate_partial_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/singleframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_per_frame_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_visualise_orientations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_42.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_intensity_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_symmetry_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_alignment_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_primitive_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_crystal_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dynamics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_adptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_breadth_first_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simulation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rsr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_optimise_amplitudes_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/exercise_compression.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dssp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_scaling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/omptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_miller_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_multipolar_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_anharmonic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_wildcard_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lstbx_normal_equations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_dsn6_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_glu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_attenuation_coefficient_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/std_pair_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_graphics_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_graph_structure_comparison_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_mosaic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_flumpy.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/regression_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_asa_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_python_meta_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/hybrid_times.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/double_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/divide_by_zero.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/inexact.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_platform_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/int_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/lcm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/segmentation_fault.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/std_pair.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/tuple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/rational.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/connected_component_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/clustering_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/min_cut_max_flow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/maximum_clique.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/minimum_cut_enumerate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/metric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/graph_structure_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/breadth_first_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_python_hybrid_times_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_distltbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_translation_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_shelx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/determine_unit_cell_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_structure_factors_direct_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_cablam_align_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_secondary_structure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_hierarchy_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_statistics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_vector_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgsb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_util_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_diffraction_fastbragg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_tiny_pse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_glmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_image_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_f_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/mod_isoform_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/comparestats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/spot_param_visualizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/ray_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/r_mtz_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/view_fineslices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/iotacc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/explore_twin_operators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/cluster_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/print_integration_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/frame_extractor_by_scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/compare_solution_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plot_energy_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/prime_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/solve_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_path_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plotstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/viewstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_kmeans.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_mx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_merge_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_perf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_leastsqr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_indexing_api_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_xplor_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/simtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/tst_kokkos_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/pixel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel copying /<>/.pybuild/cpython3_3.12/build/simtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_gpu_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_shoeboxes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_exafel_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gauss_argchk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/sim_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/predictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/FormatHDF5AttributeGeometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/forward_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/stage_two_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/base_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/attr_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/device.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/parameter_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/prep_stage2_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/ensemble_refine_launcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/psf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/stage_two_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/cctbx_dmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_scalepack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_websocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_hklinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tests_HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/compare_datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/visualize_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/model_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/qttbx.view_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/make_install_HKLviewer_ChimeraX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/hklview.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/multiplicity_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/xray_structure_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/map_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklview_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtricorder_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/cmdlineframes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/display2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/default_user_preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtriage_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklviewer_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/jsview_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt_chromium_check.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_asu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bandpass_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_hydrogens_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_boost_thread_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/development.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_anomrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/conftest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/absolute_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/benchmark_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/anom_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_direction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_same_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/fpfdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/site.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/origin_fixing_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ramachandran_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_cubicle_neighbors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cbflib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_convert_free_to_work.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/recalculate_phenix_refine_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/direct_methods_light.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_split_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_to_map_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/tst_mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_symmetry_copies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/libtbx_phil_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_shake.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/prepare_model_for_rsr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_segids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_copy_select.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_as_pdb_1atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_link_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_bioinformatics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_user_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_without_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_ligs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_atom_selections_10k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_multimodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_group_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_selected_hierarchy_flip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager_wrapping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_pdb_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_miller_sort_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_generate_n_char_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_call_consistency.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_cif_inputs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_id_str.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_all_chain_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_restraints_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_xray_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_lex_parse_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/write_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fcf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tokens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/parsers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/lexer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/crystal_symmetry_from_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/pymol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/write_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/read_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/fpfm_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/get_pubmed_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif_as_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/xplor.map.show_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/patterson_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cbf_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/flip_symmetric_amino_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.b_factor_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_completion_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.dump_as_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/blast_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.join_fragment_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz.dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_get_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dano_as_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.transfer_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtrix_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.print_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_as_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/effective_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/detector_image_as_png.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.insert_scale_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/explore_metric_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_miller_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_accumulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/biomt_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/build_phil_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/isomorphous_difference_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_atoms_by_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/poscar_as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/csv_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_show_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_centers_of_mass.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dtrek.to_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/crystal_symmetry_from_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/tst_xplormap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif_mtz_data_labels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/space_group_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_sdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/index_fobs_sigma_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/tst_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/pdb_remarks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/restraint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/ncs_spec.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/common.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/real_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtrix_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/crystal_symmetry_from_ref.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/dtrek_symmetry_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/reflnlist_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/cif_conversions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/import_data_and_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdbe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/web_service_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/aa_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_rna_dna_atom_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/crystal_symmetry_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_rna_dna_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/misc_records_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/tst_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_atom_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/cryst1_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rna_dna_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_2_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/experiment_type.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdb_v3_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hybrid_36.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_aa_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/amino_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_3_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/nucleic_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/download.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_290_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ncbi_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/homologues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ebi_wu_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/xmlbuild.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/local_blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pdb_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/alignment_as_hsearch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders_depending_on_smtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_debug_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/noir.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/marIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/dtrek.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/active_area_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/bruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_cbf_comp_read_meth.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/edf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_py_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/beam_center_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/detectorbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cspad_detector_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/camera_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation_max_iv_trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/config_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/spot_xy_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxisbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_raxis2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_slice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/macscience.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/filters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/saturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis_nonsquare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/url_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/npy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/hamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/image_from_http_request.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/tst_strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/crystal_symmetry_from_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_miller_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_dano.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/blank_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/integrate_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/read_ascii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xparm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/gain_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/spot_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/logfiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/cod_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraint_file_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/crystal_symmetry_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/ranges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/space_group_dictionary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx_cif_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fast_linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_clustering_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_covalent_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_sasaki_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_optional_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_nexus_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_integration_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/max_like.py to max_like.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/energy_scan_notch_finder.py to energy_scan_notch_finder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/time.py to time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/construct_frame.py to construct_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/jungfrau.py to jungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/rayonix.py to rayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py to cspad_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/cspad.py to cspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/xtc.py to xtc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/flumpy.py to flumpy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/SmarGonShadowMask.py to SmarGonShadowMask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image_average.py to image_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_matching_images.py to print_matching_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_registry.py to show_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/debug_memory.py to debug_memory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/plot_detector_models.py to plot_detector_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/overload.py to overload.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image2pickle.py to image2pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/detector_superpose.py to detector_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/install_format.py to install_format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_header.py to print_header.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/display_parallax_correction.py to display_parallax_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/saturation.py to saturation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_matching_formats.py to show_matching_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/read_sequence.py to read_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/depends_on.py to depends_on.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_mask_info.py to show_mask_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/datablock.py to datablock.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/crystal.py to crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/profile.py to profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan.py to scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan_helpers.py to scan_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers_types.py to detector_helpers_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/experiment_list.py to experiment_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/beam.py to beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/goniometer.py to goniometer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers.py to detector_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/xds.py to xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/filename.py to filename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/load.py to load.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache.py to filecache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/to_xds.py to to_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/resolution_corners.py to resolution_corners.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache_controller.py to filecache_controller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/sequence_filenames.py to sequence_filenames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCNoDateStamp.py to FormatSMVADSCNoDateStamp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImageLazy.py to FormatMultiImageLazy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerChessID7B2.py to FormatCBFMiniEigerChessID7B2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSNAPSID19.py to FormatSMVADSCSNAPSID19.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatGatanDM4.py to FormatGatanDM4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatROD.py to FormatROD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI51.py to TemplatePYCXI51.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPY.py to FormatPY.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerPhoton.py to FormatBrukerPhoton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPilatusHelpers.py to FormatPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBruker.py to FormatBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Lambda.py to FormatHDF5Lambda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN926.py to FormatSMVADSCSN926.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturn.py to FormatSMVRigakuSaturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py to FormatCBFMiniPilatusDESY6MSN115.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMini.py to FormatCBFMini.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5PAL.py to FormatHDF5PAL.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py to FormatCBFMiniPilatusDLS6MSN114.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCmlfsom.py to FormatSMVADSCmlfsom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmx.py to FormatNXmx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISII.py to FormatRAXISII.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py to FormatCBFMiniEigerDLS16MSN160.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniADSCHF4M.py to FormatCBFMiniADSCHF4M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS.py to FormatNXmxDLS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py to FormatCBFMiniPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBF.py to FormatCBF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMV.py to FormatSMV.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTC.py to FormatXTC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusXXX.py to FormatCBFMiniPilatusXXX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/image.py to image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS12M.py to FormatCBFMiniPilatusDLS12M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Format.py to Format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN928.py to FormatSMVADSCSN928.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN442.py to FormatSMVADSCSN442.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYmultitile.py to FormatPYmultitile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py to FormatCBFFullPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCJungfrau.py to FormatXTCJungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py to FormatCBFMiniPilatusSOLEILPX16MSN106.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexus.py to FormatHDF5EigerNearlyNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMRC.py to FormatMRC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN905.py to FormatSMVADSCSN905.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py to FormatCBFMiniEigerPhotonFactory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py to FormatCBFMiniPilatus3APS19ID6MSN132.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuEiger.py to FormatSMVRigakuEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTile.py to FormatCBFMultiTile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nexus.py to nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaRayonix.py to FormatHDF5SaclaRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatus.py to FormatCBFFullPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexus.py to FormatNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py to FormatCBFFullPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCDBG.py to FormatSMVADSCDBG.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatEDFALS733.py to FormatEDFALS733.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py to FormatCBFFullPilatusDLS300KSN104.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPetraP14.py to FormatCBFMiniEigerPetraP14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py to FormatCBFMiniEigerMaxIVBio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py to FormatCBFMiniPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFCspad.py to FormatCBFCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLSI19_2.py to FormatNXmxDLSI19_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusHelpers.py to FormatCBFMiniPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py to FormatNXmxEigerFilewriterESRFID232.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigaku.py to FormatSMVRigaku.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200.py to FormatSMVRigakuA200.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerFixedChi.py to FormatBrukerFixedChi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTileHierarchy.py to FormatCBFMultiTileHierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXIS.py to FormatRAXIS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI7d.py to TemplatePYCXI7d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16MI03.py to FormatNXmxDLS16MI03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISIVSpring8.py to FormatRAXISIVSpring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py to FormatSMVRigakuSaturnSN09040159.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN457.py to FormatSMVADSCSN457.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN915.py to FormatSMVADSCSN915.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonix.py to FormatTIFFRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/cbf_writer.py to cbf_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatStill.py to FormatStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixESRF.py to FormatTIFFRayonixESRF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsu.py to FormatSMVHamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN445.py to FormatSMVADSCSN445.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFHelpers.py to FormatTIFFHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI71.py to TemplatePYCXI71.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py to FormatHDF5EigerNearlyNexusSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVCMOS1.py to FormatSMVCMOS1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatDIP2030b.py to FormatDIP2030b.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMarIP.py to FormatMarIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI61.py to TemplatePYCXI61.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI32.py to TemplatePYCXI32.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauHack.py to FormatNexusJungfrauHack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVJHSim.py to FormatSMVJHSim.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCEpix.py to FormatXTCEpix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecified.py to FormatPYunspecified.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullByteOffset.py to FormatCBFFullByteOffset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py to FormatSMVRigakuA200SPring8BL26B1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5.py to FormatHDF5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixSPring8.py to FormatTIFFRayonixSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauExt.py to FormatNexusJungfrauExt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py to FormatSMVRigakuSaturnSN11480296.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixXPP.py to FormatTIFFRayonixXPP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxED.py to FormatNXmxED.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py to FormatCBFMiniPilatusDLS6MSN114DMM.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py to FormatCBFMiniPilatusDLS6MSN119.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI41.py to TemplatePYCXI41.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py to FormatSMVHamamatsuSPring8BL32XU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuPilatus.py to FormatSMVRigakuPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN.py to FormatSMVADSCSN.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusTimepix2M.py to FormatNexusTimepix2M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXDS.py to FormatXDS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Registry.py to Registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecifiedStill.py to FormatPYunspecifiedStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFF.py to FormatTIFF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaMPCCD.py to FormatHDF5SaclaMPCCD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriter.py to FormatNXmxEigerFilewriter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus.py to FormatCBFMiniPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCMultipleDetectors.py to FormatXTCMultipleDetectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCRayonix.py to FormatXTCRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nxmx_writer.py to nxmx_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py to FormatCBFMiniPilatusSPring8_6MSN125.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Sacla.py to FormatHDF5Sacla.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI31.py to TemplatePYCXI31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFull.py to FormatCBFFull.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py to FormatCBFMiniPilatusCHESS_6MSN127.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSC.py to FormatSMVADSC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFBruker.py to FormatTIFFBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py to FormatSMVRigakuSaturnSN07400090.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVTimePix_SU.py to FormatSMVTimePix_SU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSER.py to FormatSER.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImage.py to FormatMultiImage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN920.py to FormatSMVADSCSN920.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVNOIR.py to FormatSMVNOIR.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnNoTS.py to FormatSMVRigakuSaturnNoTS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEiger.py to FormatCBFMiniEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16M.py to FormatNXmxDLS16M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCCspad.py to FormatXTCCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/rotate_and_average.py to rotate_and_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py to PILATUS_2M_S_N_24_0107_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py to PILATUS_300K_S_N_3_0104_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/tst_spherical_bessel_jn.py to tst_spherical_bessel_jn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/tst_direct_summation.py to tst_direct_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/sweep_strength.py to sweep_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/find_active_area.py to find_active_area.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/sphere_formulae.py to sphere_formulae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/exception.py to exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/close_spots_detail.py to close_spots_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/imagefiles.py to imagefiles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache.py to apache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/multipart_encoder.py to multipart_encoder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/adsc_client.py to adsc_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_read_file.py to spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/pilatus_client.py to pilatus_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_dials.py to apache_dials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_client_push.py to spotfinder_server_client_push.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/bcsb_client_example.py to bcsb_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py to mp_spotfinder_server_is_alive.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/general_client_example.py to general_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/specific_client_example.py to specific_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_utils.py to apache_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_bcsb.py to apache_bcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py to method2_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py to ice_nztt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py to ice2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py to spotreporter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/stats_distl.py to stats_distl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_phil.py to cxi_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_run3.py to cxi_run3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/wrappers.py to wrappers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/proq2.py to proq2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/invariant_domain.py to invariant_domain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel.py to tst_fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce.py to tst_reduce.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/make_fake_anomalous_data.py to make_fake_anomalous_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ligand_ncs.py to tst_ligand_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_scattering_type_registry.py to tst_scattering_type_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_prune_model.py to tst_prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py to tst_cis_trans_peptide_link.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_maps_misc.py to tst_maps_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py to tst_cif_as_mtz_wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_mtz2map.py to tst_mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_statistics_output.py to tst_statistics_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_map.py to tst_model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_metal_link_1.py to tst_metal_link_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py to tst_refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py to tst_isomorphous_difference_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py to tst_add_arrows_on_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rigid_bond_test.py to tst_rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rank_scale_map.py to tst_rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sort_hetatms.py to tst_sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py to tst_regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_anomalous_substructure.py to tst_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_flipping_his.py to tst_flipping_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_special_term_at_end.py to tst_special_term_at_end.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py to tst_apply_cif_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_models_to_from_chains.py to tst_models_to_from_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ncs.py to tst_find_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py to tst_model_set_hydrogen_bond_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py to tst_model_tors_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model.py to tst_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py to tst_model_biomt_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py to tst_model_biomt_mtrix_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py to tst_model_cart_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ncs.py to tst_model_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_mtrix.py to tst_model_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_2.py to tst_model_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py to tst_model_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py to tst_model_remove_alternative_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py to tst_model_dedeuterate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py to tst_model_utils_merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py to tst_model_get_vdw_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_merge.py to tst_model_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_symmetry.py to tst_model_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py to tst_model_neutralize_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_map.py to tst_model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder.py to tst_polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geometry_minimization.py to tst_geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_msa.py to tst_msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_coeffs_simple.py to tst_map_coeffs_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py to tst_ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py to tst_ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py to tst_ncs_search_flips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py to tst_minimization_ncs_constraints_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py to tst_minimization_ncs_constraints2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py to tst_geometry_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py to tst_ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py to tst_minimization_ncs_constraints3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py to tst_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_loop_closure.py to tst_loop_closure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_model_cc.py to tst_map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ss_structure.py to tst_find_ss_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_angle.py to tst_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fix_rotamer_outliers.py to tst_fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py to tst_fmodel_no_cryst1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce_timeout.py to tst_reduce_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ml_estimate.py to tst_ml_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py to tst_helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validate_ligands.py to tst_validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_misc.py to tst_fmodel_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_2.py to tst_polder_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validation_summary.py to tst_validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cc_star.py to tst_cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_table_one.py to tst_table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_remediate.py to tst_altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_h_to_water.py to tst_add_h_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_schrodinger_interface.py to tst_schrodinger_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_dynamics_cli.py to tst_dynamics_cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_process_predicted_model.py to tst_process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ringer.py to tst_ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_sequence.py to tst_model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_pdbtools.py to tst_pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_minimize_chain.py to tst_minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_command_line_input.py to tst_command_line_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_3.py to tst_polder_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_domains_from_pae.py to tst_domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_adp_restraints.py to tst_adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_alignment.py to tst_alignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_ccs.py to tst_polder_ccs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_box.py to tst_polder_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py to tst_psi_phi_extraction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_origin_ids.py to tst_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py to tst_u_tls_vs_u_ens_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py to tst_formula_t_S_10_vs_11_4muy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py to tst_u_tls_vs_u_ens_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py to tst_u_tls_vs_u_ens_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py to tst_formula_t_S_10_vs_11_2igd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py to tst_tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py to tst_u_tls_vs_u_ens_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_utils.py to tst_tls_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py to tst_tls_refinement_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py to tst_tls_optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py to tst_u_tls_vs_u_ens_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py to tst_tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py to tst_get_t_scheme.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_chain_comparison.py to tst_chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py to tst_geo_min_restraints_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_chain_break.py to tst_altloc_chain_break.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_1.py to tst_polder_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_2.py to tst_fmodel_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_type_parser.py to tst_map_type_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sequence_validation.py to tst_sequence_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_clashes.py to tst_clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_multi_residue_class.py to tst_multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_fd.py to tst_fmodel_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_probe.py to tst_probe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_real_space_correlation.py to tst_real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/skew_kurt_plot.py to skew_kurt_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/tst_hbond.py to tst_hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/data_filtering.py to data_filtering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py to rotamer_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py to sample_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/all_his.py to all_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py to find_ss_from_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_1.py to tst_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_2.py to tst_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_3.py to tst_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py to tst_ss_id_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_io.py to tst_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/proteins.py to proteins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_segid.py to tst_segid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py to secondary_structure_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/nucleic_acids.py to nucleic_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py to tst_insertion_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py to regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_04.py to tst_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_02.py to tst_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/pair_interaction.py to pair_interaction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_05.py to tst_05.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_03.py to tst_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_01.py to tst_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/maxlik.py to maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_maxlik.py to tst_maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_max_lik.py to tst_max_lik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/max_like_non_uniform.py to max_like_non_uniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py to tst_mmtbx_probe_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/Helpers.py to Helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/AtomTypes.py to AtomTypes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py to CompareOriginalAndNewProbeAtomInfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_sa.py to tst_sa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/ensemble_cd.py to ensemble_cd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/cartesian_dynamics.py to cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py to tst_cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta.py to antiparallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py to antiparallel_beta_bridge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/how_to.py to how_to.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/regular_helix_definitions.py to regular_helix_definitions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/parallel_beta.py to parallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_math.py to cablam_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_fingerprints.py to cablam_fingerprints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_res.py to cablam_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_align.py to cablam_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py to tst_mcl_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py to check_cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py to cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py to tst_multi_residue_rna.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py to hydrogen_bonding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py to cdl_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py to tst_cdl_nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py to tst_rdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py to tst_pH_mechanism.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py to cdl_svl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py to sf4_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega_database.py to omega_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py to cdl_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega.py to omega.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py to tst_cis_c_n_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py to multi_residue_cdl_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py to density_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py to tst_mutli_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py to nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py to tst_omega_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py to tst_mcl_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/histidines.py to histidines.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py to tst_rna_dna_fragments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py to multi_base_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py to altloc_weighting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py to investigate_rotamer_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py to pH_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl.py to mcl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rotamers.py to rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py to rdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py to hpdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py to bond_angle_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py to tst_mcl_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py to tst_poly_ca_multi_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py to mcl_sf4_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py to metal_coordination_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py to testing_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py to tst_cdl_esd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py to LinkedResidues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py to multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py to tst_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py to tst_hpdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py to helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/partial_omit_map.py to partial_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_analysis.py to tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sort_hetatms.py to sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/anneal_real_space.py to anneal_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/density_modification.py to density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/distance_difference.py to distance_difference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sisa.py to sisa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py to reciprocal_space_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/monomer_library.comp_as_motif.py to monomer_library.comp_as_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py to show_r_factors_by_shell.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py:106: SyntaxWarning: invalid escape sequence '\(' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_suspicious_residues.py to show_suspicious_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls.py to tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/verify_mon_lib_data.py to verify_mon_lib_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_comparison.py to map_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py to apply_ncs_to_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/simulate_low_res_data.py to simulate_low_res_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_map.py to model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_peaks_holes.py to find_peaks_holes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development.aev.py to development.aev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/altloc_remediate.py to altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_atom_selection.py to pdb_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py to estimate_bijvoet_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ssm_rmsd_for_chains.py to ssm_rmsd_for_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cdl_lookup.py to cdl_lookup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/dynamics.py to dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/super.py to super.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/f000.py to f000.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer_score.py to emringer_score.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maps.py to maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/search_pdb_symmetry.py to search_pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fake_f_obs.py to fake_f_obs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ions.py to validate_ions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_screen.py to water_screen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compute_map_coefficients.py to compute_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_structure_factors.py to map_to_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validation_summary.py to validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_tls_groups.py to find_tls_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/kinemage.py to kinemage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development_fem.py to development_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_model_histogram.py to map_to_model_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/r_factor_statistics.py to r_factor_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_idealization.py to model_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rotamer_outliers.py to fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_static_disorder.py to analyze_static_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compare_ligands.py to compare_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/strip_model.py to strip_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_residue_in_pdb.py to find_residue_in_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_diff_map.py to real_space_diff_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mtz2map.py to mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/get_related_ensemble.py to get_related_ensemble.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/angle.py to angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maximum_entropy_map.py to maximum_entropy_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rank_scale_map.py to rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chains_as_models.py to chains_as_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_map.py to model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_sequence.py to model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cif_as_mtz.py to cif_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fetch_pdb.py to fetch_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_view_ad_hoc.py to pdb_view_ad_hoc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py to mon_lib_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rama_outliers.py to fix_rama_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prune_model.py to prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py to rebuild_rotarama_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel.py to fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py to refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_box.py to map_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rigid_bond_test.py to rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/models_as_chains.py to models_as_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cc_star.py to cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/massage_data.py to massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ringer.py to ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_model_distances.py to model_model_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel_simple.py to fmodel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py to rebuild_cablam_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/perigee.py to perigee.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt_fd.py to afitt_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_H_cl_app.py to validate_H_cl_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_restraints.py to secondary_structure_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_validation.py to secondary_structure_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_waters.py to validate_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_polygon_data.py to tst_polygon_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/output.py to output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_gui.py to tst_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py to tst_map_model_cc_and_vals_per_atom_xtal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/kick.py to kick.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fem.py to fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map.py to tst_composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/composite_omit_map.py to composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py to tst_composite_omit_map_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/correlation.py to correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/map_model_cc.py to map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/mtriage.py to mtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_correlation.py to tst_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py to tst_composite_omit_map_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py to pdb_distances.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:777: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:779: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:816: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1191: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1194: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1499: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1501: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1503: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1505: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1825: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1879: SyntaxWarning: invalid escape sequence '\/' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1988: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1991: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2318: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2324: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2892: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2979: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2981: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/arrays.py to arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze.py to tst_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py to tst_find_region_max_value.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py to tst_molprobity_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py to tst_ramalyze2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py to tst_chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py to tst_molprobity_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py to tst_molprobity_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rna_validate.py to tst_rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_waters.py to tst_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py to tst_clashscore_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py to tst_mp_geo_chiral_volume_cases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py to tst_molprobity_arguments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py to tst_keep_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_model_properties.py to tst_model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py to tst_molprobity_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam_2.py to tst_cablam_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py to tst_rama_z_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/run_restraints.py to run_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore.py to tst_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_undowser.py to tst_undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_suitename.py to tst_suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_omegalyze.py to tst_omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py to tst_rama_z_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py to tst_mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py to tst_mp_geo_endtoend.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rotalyze.py to tst_rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py to tst_symmetry_SS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo.py to tst_mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py to tst_do_flips_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py to tst_cbetadev_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py to tst_molprobity_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py to tst_hydrogen_addition_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev.py to tst_cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/convert_lists.py to convert_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py to convert_from_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py to mean_devs_others_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ensembles.py to ensembles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/fav_lists.py to fav_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/waters.py to waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/model_properties.py to model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbd_utils.py to cbd_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py to mean_devs_VAL_THR_ILE_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py to mean_devs_PRO_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comprehensive_residue.py to comprehensive_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/datasets.py to datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/chain_comparison.py to chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py to kinemage_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/cif_parser.py to cif_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/external.py to external.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py to base_qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py to tst_geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qm_manager.py to qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_manager.py to tst_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/ramachandran.py to ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py to tst_c_beta_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py to tst_reference_coordinate2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py to tst_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qi_utils.py to qi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py to geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/orca_manager.py to orca_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py to quantum_restraints_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py to tst_reference_coordinate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/c_beta.py to c_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/mopac_manager.py to mopac_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/reference.py to reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py to rotamer_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py to torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py to reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py to tst_torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py to tst_reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py to tst_reference_model_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Movers.py to Movers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/InteractionGraph.py to InteractionGraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py to tst_mmtbx_reduce_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Optimizers.py to Optimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model.py to f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/tncs.py to tncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/cartesian_restraints.py to cartesian_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_utils.py to ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py to ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_params.py to ncs_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs.py to ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_search.py to ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/find_peaks.py to find_peaks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/chemistry.py to chemistry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_basics.py to ready_set_basics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/electrons.py to electrons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/hierarchy_utils.py to hierarchy_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/xtal_screens.py to xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_ready_set_utils.py to tst_ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_xtal_screens.py to tst_xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_utils.py to ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/rdkit_utils.py to rdkit_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip_tasks.py to xmanip_tasks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py to tst_fit_kexpb_to_ktotal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py to tst_kb_sol_u_star_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py to bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_scaler.py to tst_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py to multi_mask_bulk_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py to tst_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py to tst_aniso_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example2.py to example2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py to kbu_refinery.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py to tst_flat_nonuniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py to tst_bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/scaler.py to scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/mosaic.py to mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py to f_model_all_scales.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example.py to example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/msa.py to msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_analyze_model.py to tst_analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/backbone.py to backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/analyze_model.py to analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_backbone.py to tst_backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/refinement.py to refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/plot_weights.py to plot_weights.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py to anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group_2.py to tst_group_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/print_statistics.py to print_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_occupancy_selections.py to tst_occupancy_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/adp_refinement.py to adp_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py to tst_anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/orca.py to orca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/refinement_flags.py to refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/wx_tardy_pdb.py to wx_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/targets.py to targets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py to tst_rigid_body_groups_from_pdb_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py to ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py to ensemble_probability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_fit_rotamers.py to tst_fit_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_refinement_flags.py to tst_refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_real_space_simple.py to tst_real_space_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py to tst_select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/group.py to group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group.py to tst_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py to minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_monitor.py to minimization_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py to inspect_tardy_trajectory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/occupancies.py to occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py to flip_peptide_side_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/weights_params.py to weights_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_misc.py to tst_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/energy_monitor.py to energy_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py to tst_aa_residue_axes_and_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py to tst_fit_residues_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py to tst_fit_residue_0H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/weight.py to weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py to tst_fit_residues_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py to explode_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_flipbase.py to tst_flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py to tst_fit_residue_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py to tst_fit_residues_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py to tst_fit_residue_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py to tst_individual_sites_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py to tst_individual_sites_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_monitor.py to tst_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residues.py to fit_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py to tst_fit_residues_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py to tst_fit_residue_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py to tst_individual_sites_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_weight.py to tst_weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py to tst_fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py to tst_fit_residue_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py to tst_fit_residues_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residue.py to fit_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py to tst_fit_residue_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_his.py to fit_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py to tst_fit_residue_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py to tst_fit_residues_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py to fit_small_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py to tst_fit_residue_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/individual_sites.py to individual_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py to tst_fit_residue_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py to tst_fit_residues_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py to tst_fit_residues_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_water.py to fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py to tst_fit_residue_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/twin_f_model.py to twin_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/probabalistic_detwinning.py to probabalistic_detwinning.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/tst_density_modification.py to tst_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/shared_types.py to shared_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/clash.py to clash.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/asa.py to asa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/altloc.py to altloc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/topology.py to topology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/sphere_surface_sampling.py to sphere_surface_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/rotatable_bonds.py to rotatable_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/grid2d.py to grid2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/tst_switch_rotamers.py to tst_switch_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/ntc.py to ntc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_parameters.py to tst_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_approx_zn.py to tst_pick_approx_zn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca_svm.py to tst_pick_ca_svm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_k.py to tst_pick_k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pickle.py to tst_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_mg.py to tst_pick_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/identify.py to identify.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_geometries.py to tst_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_ca.py to tst_validate_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca.py to tst_pick_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_symmetry_axis.py to tst_symmetry_axis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_mg.py to tst_validate_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/tst_classifier.py to tst_classifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/dump_sites.py to dump_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/build.py to build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/halides.py to halides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_environment.py to tst_environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/environment.py to environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/resolve_resources.py to resolve_resources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/domains_from_pae.py to domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitealyze.py to suitealyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/transdent.py to transdent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninput.py to suiteninput.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninit.py to suiteninit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/diangle.py to diangle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/mainchain.py to mainchain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/dualparse.py to dualparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenout.py to suitenout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenamedefs.py to suitenamedefs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suites.py to suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py to berkeley_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/ccd.py to ccd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/starting_conformations.py to starting_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/custom_gm.py to custom_gm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_idealization.py to loop_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains_2.py to tst_extend_sidechains_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_make_library.py to tst_make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/minimize_chain.py to minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/lifi.py to lifi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/make_library.py to make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/merge_models.py to merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains.py to tst_extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/tst_ias.py to tst_ias.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm15.py to perm15.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm12.py to perm12.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm13.py to perm13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm14.py to perm14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/decompose.py to decompose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/ladp.py to ladp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm10.py to perm10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/optimise_amplitudes.py to optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm11.py to perm11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/analysis.py to analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_optimize.py to mod_optimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_masks.py to mod_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_ga.py to mod_ga.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_mtz.py to mod_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/standard_geometry_cif.py to standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py to tst_rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_standard_geometry_cif.py to tst_standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/rcsb_web_services.py to rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py to tst_superpose_ideal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_server.py to tst_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py to hydrogen_restrictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py to tst_rna_dna_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py to tst_pdb_interpretation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_linking.py to tst_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conv_v2_v3.py to conv_v2_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_setup.py to linking_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py to tst_iron_sulfur_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/idealized_aa.py to idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py to tst_geo_reduce_for_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_chg.py to tst_chg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_utils.py to glyco_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py to tst_glyco_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py to tst_correct_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py to tst_all_cif_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_triage.py to tst_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_types.py to tst_cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py to tst_rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rotamer_utils.py to rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py to tst_glyco_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_mixins.py to linking_mixins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py to conformation_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py to tst_deuterium_terminii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py to tst_pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_paral_geo.py to tst_paral_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_types.py to cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_utils.py to linking_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/server.py to server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py to tst_pdb_interpretation_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py to tst_neutron_distance.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py to tst_idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_selection.py to tst_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py to tst_metal_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py to tst_protein_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/bondlength_defaults.py to bondlength_defaults.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py to rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py to tst_rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py to populate_auto_linking_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py to correct_hydrogen_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py to glyco_chiral_values.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py to tst_carbo_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_triage.py to cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py to tst_pdb_interpretation_ncs_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py to tst_tyr_from_gly_and_bnz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_masks.py to tst_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_asu_mask.py to tst_asu_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py to tst_riding_fd_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/find.py to find.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_manager.py to tst_riding_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/validate_H.py to validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py to tst_parameterization_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py to tst_parameterization_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py to tst_riding_fd_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_validate_H.py to tst_validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/parameterization.py to parameterization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py to tst_riding_fd_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py to tst_parameterization_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py to tst_parameterization_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py to tst_parameterization_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py to tst_add_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/riding.py to riding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py to tst_parameterization_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py to tst_add_hydrogen_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/build_hydrogens.py to build_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py to specialised_hydrogen_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py to tst_riding_fd_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py to tst_add_hydrogen_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_0.py to tst_add_hydrogen_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py to tst_parameterization_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/connectivity.py to connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py to tst_riding_minimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py to tst_riding_fd_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py to reduce_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py to tst_parameterization_9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py to tst_riding_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py to tst_parameterization_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/clashes.py to clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_em_rscc.py to tst_em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_scoring.py to em_scoring.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rscc.py to em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_emringer.py to tst_emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rolling.py to em_rolling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absolute_scaling.py to absolute_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/mean_f_rms_f.py to mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_scaling.py to relative_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py to tst_mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_scaling.py to tst_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pair_analyses.py to pair_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py to tst_xtriage_twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/rip_scale.py to rip_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sir_scale.py to sir_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fa_estimation.py to fa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/random_omit.py to random_omit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twin_analyses.py to twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/bayesian_estimator.py to bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/thorough_outlier_test.py to thorough_outlier_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_absences.py to tst_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py to tst_plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/siras_scale.py to siras_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pre_scale.py to pre_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absences.py to absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/make_param.py to make_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_sigmaa.py to tst_sigmaa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sad_scale.py to sad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/data_statistics.py to data_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_massage_data.py to tst_massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage.py to tst_xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/basic_analyses.py to basic_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absence_likelihood.py to absence_likelihood.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py to tst_bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_plots.py to outlier_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_rejection.py to outlier_rejection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_wilson.py to relative_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_outlier.py to tst_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twmad_scale.py to twmad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py to ta_alpha_beta_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sigmaa_estimation.py to sigmaa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py to massage_twin_detwin_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ordered_solvent.py to ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/map_to_water.py to map_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py to ensemble_ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py to tst_geostd_vs_sidechain_angles_props.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval.py to ramachandran_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py to tst_rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/nqh.py to nqh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py to ramachandran_eval_deprecated.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/n_dim_table.py to n_dim_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/sidechain_angles.py to sidechain_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/rotamer_eval.py to rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/tst_cma_es.py to tst_cma_es.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/cma_es_interface.py to cma_es_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py to self_match.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py to sample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/fonts.py to fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_motion_on_tab.py to wx_motion_on_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/quadrics.py to quadrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_leapmotion.py to wx_viewer_leapmotion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl_managed.py to gl_managed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/util.py to util.cpython-312.pyc /usr/lib/python3.12/dist-packages/gltbx/util.py:61: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/try_imports.py to try_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_functions_bpl.py to generate_functions_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl.py to gl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer.py to wx_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewers_images.py to wx_viewers_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_cube.py to wx_cube.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/images.py to images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_ellipsoids.py to tst_ellipsoids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_example.py to wx_viewer_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_viewer_utils.py to tst_viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/viewer_utils.py to viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_fonts_ucs_cpp.py to generate_fonts_ucs_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_ellipsoids_test.py to wx_ellipsoids_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/extract_opengl_specs.py to extract_opengl_specs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/glu.py to glu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_defines_bpl.py to generate_defines_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_fonts.py to tst_fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_scene.py to wx_scene.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.wx_display.py to simage.wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.explore_completeness.py to simage.explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.solver.py to simage.solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/slip_viewer.py to slip_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.create.py to simage.create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/viewer.py to viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/example_viewer.py to example_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/ersatz_misset.py to ersatz_misset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py to instrument_specifics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py to tst_detector_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_validate.py to uc1_2_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2.py to uc1_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py to uc1_2_positions_idx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/compare_mosflm_xds.py to compare_mosflm_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions.py to uc1_2_positions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2a.py to uc1_2a.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/preferences.py to preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/phil_preferences.py to phil_preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/scope.py to scope.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/tst_sublattice.py to tst_sublattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/drivers.py to drivers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/pixels3d.py to pixels3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/integration.py to integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_wrap.py to spotfinder_wrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/results_base.py to results_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_frame.py to spotfinder_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/processing.py to processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration.py to calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/controls.py to controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/integration_core.py to integration_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/slip_helpers.py to slip_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/dual_resolution_helpers.py to dual_resolution_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py to deltapsi_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/simple_integration.py to simple_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py to dials_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/stills_integration.py to stills_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/spot_markup.py to spot_markup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py to tst_bragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py to tst_utils_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_ewald_sphere.py to tst_ewald_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_partial_derivatives.py to tst_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_predict.py to tst_predict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/do_index.py to do_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_dataset1.py to tst_dataset1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_auto_monoscan.py to tst_auto_monoscan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_labelit_index.py to run_labelit_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_spotfinder.py to run_spotfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/solver.py to solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/integrate_crude.py to integrate_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/refine_uc_cr.py to refine_uc_cr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/explore_completeness.py to explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/wx_display.py to wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/create.py to create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/tst_xfel1_simple.py to tst_xfel1_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_pdf.py to sim_pdf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_utils.py to sim_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/stats_index.py to stats_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/spot_shape.py to spot_shape.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/speckfinder.py to speckfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/oscillation_shots.py to oscillation_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/pixel_spread.py to pixel_spread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/fit_distribution.py to fit_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/silicon.py to silicon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/force_cell.py to force_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/nearest_neighbor.py to nearest_neighbor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_procedure.py to outlier_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_detection.py to outlier_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/test_dps.py to test_dps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/subgroup.py to subgroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/sgtbx_adaptor.py to sgtbx_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py to parameter_reduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/g_gradients.py to g_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py to example_frame_plugin_hidden.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/uc_frame.py to uc_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/pyslip.py to pyslip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/score_frame.py to score_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/tile_generation.py to tile_generation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_display.py to slip_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/ring_frame.py to ring_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py to slip_viewer_image_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py to tst_coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_converter.py to coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py to coordinate_frame_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/cell_assessment.py to cell_assessment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/lepage.py to lepage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/zuoreduction.py to zuoreduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/constrainment.py to constrainment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/tst_iotbx_converter.py to tst_iotbx_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/checklistctrl.py to checklistctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/layout.py to layout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/symmetry_dialog.py to symmetry_dialog.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/listeditor.py to listeditor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py to plot_anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/inspect_r_free_flags.py to inspect_r_free_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/wxpython.py to wxpython.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/show_file_info.py to show_file_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_statistics.py to pdb_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py to anomalous_differences_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/loggraph.py to loggraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/ensemble_validation.py to ensemble_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/icons.py to icons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/wx4_compatibility.py to wx4_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/metallicbutton.py to metallicbutton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/windows.py to windows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/blast.py to blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon.py to polygon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/path_dialogs.py to path_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/qstat_view.py to qstat_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/misc_dialogs.py to misc_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/sequence_view.py to sequence_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/segmentedctrl.py to segmentedctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/ints.py to ints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floatctrl.py to floatctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/intctrl.py to intctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/text_base.py to text_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice_multi.py to choice_multi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py to choice.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py:18: SyntaxWarning: invalid escape sequence '\*' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/numbers.py to numbers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/array_label.py to array_label.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tribool.py to tribool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floats.py to floats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/space_group.py to space_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strctrl.py to strctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/symop.py to symop.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strings.py to strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/unit_cell.py to unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/boolctrl.py to boolctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tree.py to tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/misc_ctrls.py to misc_ctrls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/simple_dialogs.py to simple_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/bitmaps.py to bitmaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/adp_statistics.py to adp_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/anomalous_scattering.py to anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/browser.py to browser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/heavy_atoms.py to heavy_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon_db_viewer.py to polygon_db_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/info_panels.py to info_panels.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:208: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:418: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/process_control.py to process_control.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/mtz_dump.py to mtz_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/custom_restraints.py to custom_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/app.py to app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/monitor.py to monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_xmlrpc_utils.py to tst_xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_topological_sort.py to tst_topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/env_config.py to env_config.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/log.py to log.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/introspection.py to introspection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/configure.py to configure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/runtime_utils.py to runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/object_oriented_patterns.py to object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/python_string.py to python_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/start_print_trace.py to start_print_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/statistics_info.py to statistics_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp.py to tst_easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_citations.py to tst_citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/metric_prefixes.py to metric_prefixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_runtime_utils.py to tst_runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/mpi4py.py to mpi4py.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_thread_utils.py to tst_thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_csh.py to install_csh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_bat.py to install_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_all.py to copy_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_build_libtbx.py to copy_build_libtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_runtime_sources.py to copy_runtime_sources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/table_utils.py to table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/try_hello_world_c.py to try_hello_world_c.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_untested.py to find_untested.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/path_utility.py to path_utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/git_avoid_merges.py to git_avoid_merges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports_crude.py to find_unused_imports_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_clutter.py to find_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bundle_as_exe.py to bundle_as_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/py_compile_all.py to py_compile_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_modules.py to list_modules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_host_and_user.py to show_host_and_user.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/nequal.py to nequal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/easy_qsub.py to easy_qsub.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py to assert_stdin_contains_strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remote_processing.py to remote_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/scons.py to scons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/extract_code_from_txt.py to extract_code_from_txt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py to list_source_files_sorted_by_size.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/wait_for_file.py to wait_for_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_ends_with.py to assert_stdin_ends_with.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/chunk.py to chunk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/line_count.py to line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clean_clutter.py to clean_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_dist.py to make_dist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/help.py to help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/epydoc_run.py to epydoc_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_old_style_classes.py to find_old_style_classes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_unzipsfx.py to create_unzipsfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/env_run.py to env_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_pickled_function.py to run_pickled_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_sphinx_html.py to make_sphinx_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_ext.py to import_all_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_pythonpath.py to show_pythonpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_tests_parallel.py to run_tests_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_binary_bundle.py to start_binary_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_but_no_repr.py to show_but_no_repr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_install_script_bat.py to create_install_script_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_available_slots.py to sge_available_slots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/check_libcpp.py to check_libcpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_line_count.py to assert_line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_in_repositories.py to find_in_repositories.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_qstat_counts.py to sge_qstat_counts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_tests.py to show_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_sys_executable.py to show_python_sys_executable.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remove_tree.py to remove_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_number_of_processors.py to show_number_of_processors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/raise_exception_for_testing.py to raise_exception_for_testing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_dist_paths.py to show_dist_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sphinx_build.py to sphinx_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_files.py to list_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_process.py to start_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_date_and_time.py to show_date_and_time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/analyse_code_comments.py to analyse_code_comments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_module_dependencies.py to show_module_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/printenv.py to printenv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_commands.py to show_commands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/ipython_shell_start.py to ipython_shell_start.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_not_show_diff.py to assert_not_show_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_repository_paths.py to show_repository_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_reserved_names.py to find_reserved_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/add_from_future_import_division.py to add_from_future_import_division.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_include_paths.py to show_include_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/seconds_since_the_epoch.py to seconds_since_the_epoch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/parallel_simple.py to parallel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_bin_path.py to show_bin_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numpy_version.py to show_numpy_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_variable_names.py to show_variable_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_python.py to import_all_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_full_command_path.py to show_full_command_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/dtrace.py to dtrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/any2unix.py to any2unix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports.py to find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_dependencies.py to show_python_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_files.py to find_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_all_on_path.py to show_all_on_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numeric_version.py to show_numeric_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_env.py to show_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/prime_factors_of.py to prime_factors_of.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_options.py to show_build_options.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_path.py to show_build_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_selfx.py to create_selfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_lib_path.py to show_lib_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin.py to assert_stdin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_under_build.py to find_under_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install.py to install.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_profile.py to easy_profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_multicore.py to tst_easy_mp_multicore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/complex_math.py to complex_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/crossmingw.py to crossmingw.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileServer.py to FileServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileClient.py to FileClient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/StartServer.py to StartServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileSocket.py to FileSocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/SocketServer.py to SocketServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/interface.py to interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/parser.py to parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/gui_objects.py to gui_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_interface.py to tst_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_tokenizer.py to tst_tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tokenizer.py to tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/callbacks.py to callbacks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_run.py to easy_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_path.py to tst_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/find_reference_cycles.py to find_reference_cycles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_binary_search.py to tst_binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_program_template.py to tst_program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/dlite.py to dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_pickle.py to tst_easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_find_unused_imports.py to tst_find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_fully_buffered_timeout.py to tst_fully_buffered_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/math_utils.py to math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_object_oriented_patterns.py to tst_object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_server_example.py to xmlrpc_server_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/str_utils.py to str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/console_utils.py to console_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_mp.py to easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_math_utils.py to tst_math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_dlite.py to tst_dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/load_env.py to load_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/forward_compatibility.py to forward_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subversion.py to subversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cli.py to cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/simplexml.py to simplexml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_pickle.py to easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/python_code_parsing.py to python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/objgraph.py to objgraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_representation.py to tst_representation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_utils.py to xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py to fastentrypoints.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:43: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:92: SyntaxWarning: invalid escape sequence '\.' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/looping.py to looping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py to polling.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py:282: SyntaxWarning: invalid escape sequence '\?' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/transfer.py to transfer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/submission.py to submission.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/status.py to status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py to scheduling_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/sge_utils.py to sge_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/generic.py to generic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/communication.py to communication.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/pbs_utils.py to pbs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/remote.py to remote.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/lsf.py to lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling.py to scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/code_analysis.py to code_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mainthread.py to mainthread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/philgen.py to philgen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/file_queue.py to file_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/socket_queue.py to socket_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/parallel_for.py to parallel_for.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/shared_resource.py to shared_resource.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/cluster_handler.py to cluster_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/process_pool.py to process_pool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/job_scheduler.py to job_scheduler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mp_handler.py to mp_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/thread_handler.py to thread_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/stacktrace.py to stacktrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_state.py to tst_easy_mp_state.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/topological_sort.py to topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/containers.py to containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/parallel.py to parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/pytest.py to pytest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/xcode_build_phase.py to xcode_build_phase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/timers.py to timers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/except_Exception.py to except_Exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_version.py to tst_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/wingide.py to wingide.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/thread_utils.py to thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/assert_utils.py to assert_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_scheduling.py to tst_scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subprocess_with_fixes.py to subprocess_with_fixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/smart_open.py to smart_open.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clusterTests.py to clusterTests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/binary_search.py to binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_python_code_parsing.py to tst_python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_containers.py to tst_containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_template.py to program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/file_clutter.py to file_clutter.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:12: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:14: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:16: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cpp_function_name.py to cpp_function_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyframe.py to pyframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/progress.py to progress.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/regenerate_module_files.py to regenerate_module_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_installer.py to create_windows_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_pkg.py to create_mac_pkg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py to install_base_packages.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py:840: SyntaxWarning: invalid escape sequence '\$' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/installer_utils.py to installer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/setup_installer.py to setup_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py to write_gui_dispatcher_include.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py to bootstrap.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:455: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:457: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/plus_installer.py to plus_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/make_bundle.py to make_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/rpath.py to rpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_distribution.py to install_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/package_defs.py to package_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyplot.py to pyplot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_str_utils.py to tst_str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pkg_utils.py to pkg_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/validation_lists.py to validation_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/hydrogens_button.py to hydrogens_button.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/view_refinement.py to view_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/xmlrpc_server.py to xmlrpc_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/interactive_edit.py to interactive_edit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/watch_file.py to watch_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/ligand_checklist.py to ligand_checklist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/simple_zoom_list.py to simple_zoom_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_group_matrices.py to space_group_matrices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py to convert_ccp4_symop_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py to trigonal_r_vs_tetragonal_i.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_consistency_checks.py to cr2o3_consistency_checks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives.py to structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_phase_o_phrenia.py to tst_phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py to list_non_principal_continuous_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py to g_exp_i_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_space_subgroups.py to tst_space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_constraints.py to site_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/adp_symmetry_constraints.py to adp_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_transform.py to miller_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py to tst_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/maximum_subgroups.py to maximum_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py to g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/neutron_structure_factors.py to neutron_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/change_hand_p31.py to change_hand_p31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py to fft_map_electron_density_around_atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_table.py to site_symmetry_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py to find_distances_using_cpp_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/sub_group_graph.py to sub_group_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/getting_started.py to getting_started.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py to test_levenberg_sparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/join.py to join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/scale.py to scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py to per_lattice_postrefinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_subset.py to data_subset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/task4.py to task4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test1.py to test1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_cc_half.py to test_cc_half.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_utilities.py to data_utilities.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/tst_permutations.py to tst_permutations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/show_results.py to show_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/sigma_correction.py to sigma_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_puckers.py to random_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/location_part.py to location_part.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_f_calc.py to random_f_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py to tst_g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_minimizers.py to unit_cell_minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/view_fft_map.py to view_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_4.py to structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/steve_collins.py to steve_collins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_common_sets.py to miller_common_sets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_refinement.py to unit_cell_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/f_model_example.py to f_model_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py to find_sys_abs_equiv_space_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py to le_page_1982_vs_lebedev_2005.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_2.py to structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/lebedev_2005_perturbation.py to lebedev_2005_perturbation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/ccp4_map.py to ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/quartz_structure.py to quartz_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/symops_530.py to symops_530.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/hirshfeld_test.py to hirshfeld_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py to tst_structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_primitive_cell.py to cr2o3_primitive_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py to tst_structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_subgroups.py to space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/analyze_adp.py to analyze_adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/reduced_cell_two_folds.py to reduced_cell_two_folds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py to exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_3.py to structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py to u_star_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py to sites_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py to site_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py to sites_least_squares_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py to tst_structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/map_skewness.py to map_skewness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py to tst_structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py to read_custom_scattering_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/van_der_waals_radii.py to van_der_waals_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/fp_fdp.py to fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/icsd_radii.py to icsd_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/attenuation_coefficient.py to attenuation_coefficient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/chemical_elements.py to chemical_elements.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/wavelengths.py to wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/sasaki.py to sasaki.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/neutron.py to neutron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/e_scattering.py to e_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/henke.py to henke.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/e_scattering_plots.py to e_scattering_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_fits.py to kissel_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_approx.py to itvc_approx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_section61_io.py to itvc_section61_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/combine_fits.py to combine_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py to create_n_gaussian_raw_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py to itvc_cross_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/rez_rez_grant.py to rez_rez_grant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/hydrogen_plots.py to hydrogen_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_kissel.py to itvc_kissel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_fits.py to itvc_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_io.py to kissel_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py to format_gaussian_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/formula.py to formula.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/tiny_pse.py to tiny_pse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/covalent_radii.py to covalent_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_fft_map.py to tst_miller_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_target_functors.py to tst_xray_target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sphericity.py to tst_sphericity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py to tst_sgtbx_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py to tst_sgtbx_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_diffuse.py to tst_diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_refine_xray_curvs.py to tst_refine_xray_curvs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_weighting_schemes.py to tst_weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_derivatives.py to tst_xray_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_show_cosets.py to tst_show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_loc_res.py to tst_loc_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_scaling.py to tst_direct_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py to tst_miller_double_step_filtration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_krivy_gruber.py to tst_krivy_gruber.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_find_best_cell.py to tst_find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal.py to tst_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_twin_target.py to tst_twin_target.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_triplet_generator.py to tst_triplet_generator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_coordination_sequences.py to tst_coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_amplitude_normalisation.py to tst_amplitude_normalisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization_failure.py to tst_xray_minimization_failure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py to tst_miller_merge_equivalents.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints.py to tst_geometry_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_web_change_basis.py to tst_web_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py to tst_maptbx_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py to tst_adp_aniso_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_math_module.py to tst_math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wilson_plot.py to tst_wilson_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_mask.py to tst_maptbx_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py to tst_sgtbx_special_op_simplifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem_2.py to tst_mem_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pointgroup_tools.py to tst_pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py to tst_sgtbx_tidy_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_space_asu.py to tst_direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py to tst_adp_constraints_cartesian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_2.py to tst_geometry_restraints_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wavelength_units.py to tst_wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints.py to tst_adp_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_f_model.py to tst_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray.py to tst_xray.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py to tst_geometry_restraints_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_french_wilson.py to tst_french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_denominators.py to tst_sgtbx_denominators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_expand_to_p1.py to tst_expand_to_p1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity_allsym.py to tst_connectivity_allsym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_statistics_graphs.py to tst_statistics_graphs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_statistics.py to tst_miller_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_create_models_or_maps.py to tst_create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py to tst_fcalc_fft_stability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grouped_data.py to tst_grouped_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_close_packing.py to tst_crystal_close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py to tst_map_weights_for_symmetry_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py to tst_sf_low_res_accuracy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization.py to tst_xray_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py to tst_sgtbx_site_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fast_nv1995.py to tst_fast_nv1995.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py to tst_space_group_type_tidy_cb_op_t.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_emma.py to tst_emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_harker.py to tst_sgtbx_harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_lookup_utils.py to tst_miller_lookup_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem.py to tst_mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pair_asu_table.py to tst_pair_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py to tst_prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_data_manipulation.py to tst_miller_data_manipulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py to tst_reciprocal_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py to tst_itvb_2001_table_a1427_hall_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py to tst_crystal_asu_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_fast_gradients.py to tst_xray_fast_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_r_free_utils.py to tst_r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_modifications.py to tst_grm_modifications.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py to tst_fourier_transform_real_part_at_x.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx.py to tst_sgtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_pickling.py to tst_grm_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_change_basis.py to tst_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_box.py to tst_maptbx_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller.py to tst_miller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_is_periodic.py to tst_map_is_periodic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/math_module.py to math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973.py to gruber_1973.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/reduction_base.py to reduction_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973_table_1.py to gruber_1973_table_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/krivy_gruber_1976.py to krivy_gruber_1976.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/iotbx_cif_validate.py to iotbx_cif_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/wyckoff.py to wyckoff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_hand.py to change_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/replay.py to replay.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/cgi_utils.py to cgi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/libtbx_help.py to libtbx_help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors.py to structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/frac_cart.py to frac_cart.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/io_utils.py to io_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/multiple_cell.py to multiple_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors_pdb.py to structure_factors_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_setting.py to change_setting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/explore_symmetry.py to explore_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/browse_settings.py to browse_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jvx.py to jvx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/web_links.py to web_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_index.py to jv_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py to guide_to_notation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_asu.py to jv_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/dispatcher.py to dispatcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/shelx.py to shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py to eltbx.show_fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cctbx_test_nightly.py to cctbx_test_nightly.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/diffuse.py to diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py to find_reticular_twin_laws.cpython-312.pyc /usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py:37: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/wavelength_units.py to wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/xray_structure.show.py to xray_structure.show.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_join.py to samosa_join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/precession_view.py to precession_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/space_group_info.py to space_group_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/structure_factor_timings.py to structure_factor_timings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/form_factor_query.py to form_factor_query.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_scale.py to samosa_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/translation_search.py to translation_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/tst_observations.py to tst_observations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_base.py to gradients_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py to from_scatterers_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients.py to gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py to from_scatterers_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py to from_scatterers_direct_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_direct.py to gradients_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_fft.py to gradients_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradient_flags.py to gradient_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/global_counters.py to global_counters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers.py to from_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/scatterer.py to scatterer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/target_functors.py to target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py to tst_shelxl_wght_ls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_r1.py to tst_r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/r1.py to r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observation_types.py to observation_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/reindexing.py to reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_reindexing.py to tst_reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_map_to_asu_isym.py to tst_map_to_asu_isym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/linking_class.py to linking_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/standard_cif_links.py to standard_cif_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py to tst_nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/lbfgs.py to lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py to tst_angle_derivs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py to tst_process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py to tst_proxy_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/base_geometry.py to base_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py to process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/auto_linking_types.py to auto_linking_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/dmtbx.py to dmtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py to rational_matrices_point_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/pointgroup_tools.py to pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/harker.py to harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_twin_laws.py to reticular_twin_laws.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sys_abs_equiv.py to sys_abs_equiv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/literal_description.py to literal_description.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_pg_tools.py to reticular_pg_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/bravais_types.py to bravais_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py to check_redundancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py to plane_group_reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py to short_cuts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py to facet_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py to cut_plane.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py to generate_cpp_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py to tst_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py to reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sub_lattice_tools.py to sub_lattice_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/plane_groups.py to plane_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/show_cosets.py to show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/symbol_confidence.py to symbol_confidence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/cosets.py to cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adptbx.py to adptbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_refine.py to cod_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_bfgs.py to tst_bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/eval_iso_vs_refined.py to eval_iso_vs_refined.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cif_refine.py to cif_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/bfgs.py to bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_dev.py to tst_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tardy_adaptor.py to tardy_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/dev.py to dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/pdb_dev.py to pdb_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/anharmonic.py to anharmonic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py to generate_sasaki_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py to generate_henke_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/rotation_parameters.py to rotation_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/r_free_utils.py to r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal_orientation.py to crystal_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py to burzlaff_zimmermann_dewolff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/coordination_sequences.py to coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/super_cell.py to super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/close_packing.py to close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/direct_space_asu.py to direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/find_best_cell.py to find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py to tst_distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_super_cell.py to tst_super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/electron_density_sampling.py to electron_density_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_epsilon.py to tst_cns_epsilon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_hl.py to tst_cns_hl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/create_models_or_maps.py to create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/github.py to github.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/direct_or_fft.py to direct_or_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_settings.py to make_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/fmt_utils.py to fmt_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py to approx_amplitude_vs_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx76.py to run_shelx76.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/cns_density_modification.py to cns_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/space_group_option_parser.py to space_group_option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_cns_input.py to make_cns_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/debug_utils.py to debug_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/structure_factor_utils.py to structure_factor_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx.py to run_shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/random_structure.py to random_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_examples.py to run_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/multipolar.py to multipolar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_mask.py to tst_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_loft.py to tst_loft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_target_and_gradients.py to tst_target_and_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mem.py to mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py to resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_bcr.py to tst_bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_ccp.py to tst_ccp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py to tst_real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py to tst_atom_radius_as_central_peak_width.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py to tst_get_percentile_cutoffs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation_2.py to tst_interpolation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_scales_errors.py to refine_scales_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/bcr.py to bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_asymmetric_map.py to tst_asymmetric_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/real_space_refinement_simple.py to real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_sharpening.py to refine_sharpening.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py to tst_peak_volume_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/prepare_map_for_docking.py to prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_curves.py to tst_atom_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py to tst_resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/box.py to box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation.py to tst_interpolation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py to tst_map_peak_3d_as_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/map_symmetry.py to map_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tokenization.py to tokenization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/fem_include_search_paths.py to fem_include_search_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/show_calls.py to show_calls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py to insert_write_at_start_of_each_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/split.py to split.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout_compile.py to tst_cout_compile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_equivalence.py to tst_equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/equivalence.py to equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/simple_compilation.py to simple_compilation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/intrinsics.py to intrinsics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout.py to tst_cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_read.py to tst_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/chimerax.py to chimerax.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py to tst_3_doc_hlo_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py to tst_4_doc_hlo_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py to tst_5_doc_hlo_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/exercise.py to exercise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py to tst_12_script_compare_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py to tst_17_script_rfactors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py to tst_7_doc_low_flex_advanced.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py to tst_19_doc_programming_tips_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py to tst_8_doc_maps_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_11_script_1.py to tst_11_script_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py to tst_15_doc_models_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py to tst_16_script_lbfgs_with_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py to tst_18_doc_programming_tips_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py to tst_13_script_ideal_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_py_from_html.py to tst_py_from_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py to tst_2_doc_hlo_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py to tst_10_doc_programming_tips_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py to tst_14_script_lbfgs_no_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py to tst_9_doc_maps_boxing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py to tst_6_doc_hlo_model_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_1_template.py to tst_1_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py to extract_script_from_html_cctbx_doc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/minimizer_comparisons.py to minimizer_comparisons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py to integrating_a_weighted_sinc_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_recipe.py to lbfgs_recipe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_array_loops.py to flex_array_loops.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/chebyshev_lsq_example.py to chebyshev_lsq_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/immoptibox_ports.py to immoptibox_ports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_grid.py to flex_grid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py to lbfgs_linear_least_squares_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/silver.py to silver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/rigid_body_refinement_core.py to rigid_body_refinement_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/principal_axes_of_inertia.py to principal_axes_of_inertia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/r3_utils.py to r3_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/dicts.py to dicts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_random_transform.py to tst_random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_transform.py to random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/graph_tools.py to graph_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/signal_utils.py to signal_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_graph.py to tst_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/robust_statistics.py to robust_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_robust.py to tst_robust.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_utils.py to random_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/test_problems.py to test_problems.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py to tst_normal_equations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns_solving.py to normal_eqns_solving.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns.py to normal_eqns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/tst_wigner3j.py to tst_wigner3j.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_2d_zernike.py to tst_2d_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900.py to fliege_mayer_900.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian.py to tst_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_curve_fitting.py to tst_curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py to tst_gaussian_fit_1d_analytical.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_cubic_equation.py to tst_cubic_equation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_halton.py to tst_halton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_exp_functions.py to tst_exp_functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_g_function.py to tst_g_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_resample.py to tst_resample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_weighted_correlation.py to tst_weighted_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py to tst_minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_euler_angles.py to tst_euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py to tst_error_propagation_matrix_inverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gcd.py to tst_gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_dmatrix.py to tst_dmatrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_r3_rotation.py to tst_r3_rotation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_clustering.py to tst_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_quadrature.py to tst_quadrature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_angle_derivative.py to tst_angle_derivative.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py to tst_fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py to tst_orthonormal_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py to tst_uniform_rotation_matrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_line_search.py to tst_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_peak.py to tst_fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_tetrahedron.py to tst_tetrahedron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_bessel.py to tst_bessel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_similarity_indices.py to tst_similarity_indices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_periodogram.py to tst_periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_math.py to tst_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_100_13.py to des_3_100_13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_multivariate_moments.py to tst_multivariate_moments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/besselk.py to besselk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/minimum_covering_ellipsoid.py to minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike.py to tst_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/lefebvre.py to lefebvre.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/undirected_graph.py to undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/multiple_superposition.py to multiple_superposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/incremental_SO3_sampling.py to incremental_SO3_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/spe.py to spe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/periodogram.py to periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_240_21.py to des_3_240_21.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_so3_lie_algebra.py to tst_so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/chebyshev_lsq_fit.py to chebyshev_lsq_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/zernike_align_fft.py to zernike_align_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/cubic_spline.py to cubic_spline.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sphere_sphere_intersection.py to sphere_sphere_intersection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_400.py to fliege_mayer_400.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/distributions.py to distributions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gumbel.py to gumbel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/breakpoint.py to breakpoint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_peak.py to fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sieve_of_eratosthenes.py to sieve_of_eratosthenes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/so3_lie_algebra.py to so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/curve_fitting.py to curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike_mom.py to tst_zernike_mom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian.py to gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_bessel_zeros.py to tst_bessel_zeros.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/clustering.py to clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_undirected_graph.py to tst_undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py to fliege_mayer_900_ylm.cpython-312.pyc /usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py:1: SyntaxWarning: invalid escape sequence '\i' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/euler_angles.py to euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_quadratic_function.py to fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/farey.py to farey.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/scale_curves.py to scale_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/genetic_algorithm_with_mp.py to genetic_algorithm_with_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/svd.py to svd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/eigensystem.py to eigensystem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/householder.py to householder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/bounds.py to bounds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py to realsymmetricpseudoinverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/reparams.py to reparams.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/minimizer.py to minimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/twisted_gaussian.py to twisted_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/compulsory.py to compulsory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/min_logging.py to min_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/auxiliary.py to auxiliary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/refinebase.py to refinebase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/single.py to single.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_rigidity.py to tst_rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity.py to rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/test_cases_tardy_pdb.py to test_cases_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py to tst_tardy_tree_find_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree.py to tst_tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py to rigidity_matrix_symbolic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tardy_tree.py to tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py to tst_func_free_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py to tst_lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py to tst_mpi_split_evaluator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_curvatures.py to tst_curvatures.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/regular_grid_on_unit_sphere.py to regular_grid_on_unit_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cubicle_neighbors.py to cubicle_neighbors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/lbfgs_fem.py to lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py to generate_operator_traits_builtin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py to generate_operator_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_algebras.py to generate_algebras.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py to generate_std_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py to operator_functor_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_reductions.py to generate_reductions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_apply.py to generate_apply.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minimizers.py to minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/direct_search_simulated_annealing.py to direct_search_simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/fftpack.py to fftpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/shared.py to shared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_vector.py to tst_vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/vector.py to vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_set.py to tst_set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/set.py to set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_map.py to tst_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py to tst_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py to tst_free_motion_hard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py to free_motion_reference_impl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_simulation.py to test_simulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py to wx_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_molecules.py to wx_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py to tst_featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_singular.py to tst_singular.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_utils.py to test_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py to wx_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py to tst_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py to tst_spherical_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_molecules.py to tst_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_basic.py to tst_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/make_bundles.py to make_bundles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/wx_tardy.py to wx_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/body_lib.py to body_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py to tst_energy_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_tardy.py to tst_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/spatial_lib.py to spatial_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/tst_iso_surface.py to tst_iso_surface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/smoothing.py to smoothing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cross_entropy.py to cross_entropy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/golden_section_search.py to golden_section_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/row_echelon.py to row_echelon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/differential_evolution.py to differential_evolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minpack.py to minpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgsb.py to lbfgsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/simplex.py to simplex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/isoform.py to isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/simulate.py to simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_support.py to progress_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/split_pickles.py to split_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_utils.py to progress_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/ui_server.py to ui_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_in_gui.py to plot_run_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/get_hit_timestamps.py to get_hit_timestamps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats.py to plot_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_isoform_cloud.py to plot_isoform_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud_from_experiments.py to plot_uc_cloud_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/xfel_gui_launch.py to xfel_gui_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py to plot_spotfinder_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_from_experiments.py to plot_run_stats_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud.py to plot_uc_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/print_run_stats.py to print_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_reflection_stats.py to plot_reflection_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_scraper.py to spotfinder_scraper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/run_stats_plotter.py to run_stats_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_controls.py to xfel_gui_controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_plotter.py to spotfinder_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_init.py to xfel_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/submission_tracker.py to submission_tracker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py to xfel_gui_plotter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:393: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:395: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:397: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/tooltips.py to tooltips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/timeit.py to timeit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_dialogs.py to xfel_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/phil_patch.py to phil_patch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/stats.py to stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/trial.py to trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dxtbx_db.py to dxtbx_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/frame_logging.py to frame_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/xfel_db.py to xfel_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/experiment.py to experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/job.py to job.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/rungroup.py to rungroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/tag.py to tag.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py to merging_log_scraper.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:106: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:189: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/task.py to task.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/shifter_templates.py to shifter_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/test_3_gaussian.py to test_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/fit_3_gaussian.py to fit_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/fxs.py to fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_index.py to mpi_fxs_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_calib.py to mpi_fxs_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_c2.py to mpi_fxs_c2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_tbx.py to pnccd_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_launch.py to mpi_fxs_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_mask.py to mpi_fxs_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_hit.py to pnccd_hit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_bg.py to mpi_fxs_bg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/mono_treatment.py to mono_treatment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/max_like_pos_neg.py to max_like_pos_neg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pyana.py to cxi_pyana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_circular_gain_mask.py to cspad_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_apply_metrology.py to cxi_apply_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_shifts.py to cspad_detector_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence2.py to cspad_detector_congruence2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map_cbf.py to convert_gain_map_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_extractor.py to frame_extractor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/list_db_metadata.py to list_db_metadata.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cbf_average.py to cbf_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_optical2cbfheader.py to cxi_optical2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_psana.py to cxi_psana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pbs.py to cxi_pbs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_lsf.py to cxi_lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants.py to quadrants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/print_pickle.py to print_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_merge.py to cxi_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_calibdir2cbfheader.py to cxi_calibdir2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_dials_mask.py to make_dials_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_generate_circular_gain_mask.py to cxi_generate_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_mpi_submit.py to cxi_mpi_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/overlay_spectra.py to overlay_spectra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_json_to_cbf_def.py to experiment_json_to_cbf_def.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_bar.py to xpp_progress_bar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_spots.py to cxi_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/stills_merge.py to stills_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_manager.py to experiment_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_process.py to xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_isoform.py to xpp_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/recompute_mosaicity.py to recompute_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py to cxi_stream_to_pickle.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:41: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:42: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:45: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:48: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:51: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/plot_to_subpixel.py to plot_to_subpixel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cspad_pinwheel.py to cxi_cspad_pinwheel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_dump.py to xtc_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/auto_submit.py to auto_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_simulate.py to xpp_simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map.py to convert_gain_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trial_stats.py to trial_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mar_mask.py to make_mar_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_detector_format_versions.py to cxi_detector_format_versions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py to detector_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1124: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1126: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1266: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1267: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1268: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1294: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1295: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1296: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_slaccalib2cbfheader.py to cxi_slaccalib2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/beamcenter.py to beamcenter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/runs_sentinel.py to runs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mask.py to make_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/get_next_trial_id.py to get_next_trial_id.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jobs_sentinel.py to jobs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/find_highres_shots.py to find_highres_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_view.py to cxi_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_index.py to cxi_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py to experiment_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py:203: SyntaxWarning: invalid escape sequence '\D' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/striping.py to striping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xmerge.py to cxi_xmerge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_parameters.py to cxi_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/or_mask.py to or_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jungfrau_metrics.py to jungfrau_metrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/smooth_spectrum.py to smooth_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_trials.py to monitor_trials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/subtract_background.py to subtract_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_calibration.py to fee_calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/launch_fxs.py to launch_fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xfel_process.py to xfel_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_detail.py to xpp_progress_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/FEE_average_plot.py to FEE_average_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_view.py to fee_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_unpickler.py to frame_unpickler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xtc_process.py to cxi_xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cctbx_integration_pickle_viewer.py to cctbx_integration_pickle_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trumpet_plots.py to trumpet_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cbfheader2slaccalib.py to cxi_cbfheader2slaccalib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/h5_average.py to h5_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence.py to cspad_detector_congruence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/riso.py to riso.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_detectors.py to monitor_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/calc_gain_ratio.py to calc_gain_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_plotcv.py to cxi_plotcv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/filter_experiments_by_rmsd.py to filter_experiments_by_rmsd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/upload_mtz.py to upload_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pickle2cbf.py to cxi_pickle2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/mpi_average.py to mpi_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_display_metrology.py to cxi_display_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_cbf_metrology.py to cspad_cbf_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/view_pixel_histograms.py to view_pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_diff.py to cxi_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_statistics.py to cspad_detector_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants_cbf.py to quadrants_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/absorption.py to absorption.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/general_fcalc.py to general_fcalc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/mpi_integrate.py to mpi_integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database.py to merging_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_sqlite3.py to merging_database_sqlite3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_fs.py to merging_database_fs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_flex.py to merging_database_flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/predictions_to_edges.py to predictions_to_edges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/experiment_scaler.py to experiment_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/merger.py to merger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/experiment_filter.py to experiment_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/reflection_filter.py to reflection_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/worker.py to worker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/token_passing_left_right.py to token_passing_left_right.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_reference.py to reindex_to_reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_abc.py to reindex_to_abc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/compare_results.py to compare_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/aux_cosym.py to aux_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/df_cosym.py to df_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym_tranch_align.py to cosym_tranch_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym.py to cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/polarization.py to polarization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_cosym.py to reindex_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_helper.py to mpi_helper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/application.py to application.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/resolution_binner.py to resolution_binner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/crystal_model.py to crystal_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/group_reflections.py to group_reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/integrate.py to integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py to intensity_resolution_statistics_cxi.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py:350: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/beam_statistics.py to beam_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_histogram.py to intensity_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics.py to intensity_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/experiment_resolution_statistics.py to experiment_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/unit_cell_statistics.py to unit_cell_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/load_balancer.py to load_balancer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/data_counter.py to data_counter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/memory_usage.py to memory_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs.py to postrefinement_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs2.py to postrefinement_rs2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_load_calculator.py to file_load_calculator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_loader.py to file_loader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_lister.py to file_lister.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/reflection_table_utils.py to reflection_table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_sr.py to error_modifier_sr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ha14.py to error_modifier_ha14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ev11.py to error_modifier_ev11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/cell_listing.py to cell_listing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/lunus.py to lunus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/phil_validation.py to phil_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine.py to sdfac_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/error_modeler_base.py to error_modeler_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate.py to sdfac_propagate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/errors_from_residuals.py to errors_from_residuals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/reduced_chi_squared.py to reduced_chi_squared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py to sdfac_propagate_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py to sdfac_refine_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py to sdfac_refine_levmar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark3.py to mark3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py to flatfile.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1022: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1024: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1026: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1028: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/panel_fitting.py to panel_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark0.py to mark0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark1.py to mark1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/quadrant.py to quadrant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark10.py to mark10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/read_geom.py to read_geom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/write_composite_image.py to write_composite_image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_from_defs.py to agipd_from_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_cxigeom2nexus.py to agipd_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/psana_cctbx.py to psana_cctbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/cctbx_xfel_installer.py to cctbx_xfel_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/reflection_length.py to reflection_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/image_pickle_locator.py to image_pickle_locator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/mp.py to mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/kapton_2019_correction_frame_frame_plugin.py to kapton_2019_correction_frame_frame_plugin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_pickle_reader.py to dials_pickle_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_file_matcher.py to dials_file_matcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/split_detector.py to split_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/jf4m_geom2nexus.py to jf4m_geom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/average_spots.py to average_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py to mod_spectrum_filter_remote_only.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_average.py to mod_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_ledge.py to mod_ledge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/rayonix_tbx.py to rayonix_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py to mod_filter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:52: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:53: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/average_tbx.py to average_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_param.py to mod_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_illumination_filter.py to mod_illumination_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_pulnix_dump.py to mod_pulnix_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_view.py to mod_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump_bitmap.py to mod_dump_bitmap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hitfind.py to mod_hitfind.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/pixel_histograms.py to pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_xes.py to mod_xes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py to mod_spectrum_filter_v2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_mar.py to mod_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/hitfinder_tbx.py to hitfinder_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump.py to mod_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_radial_average.py to mod_radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_image_dict.py to mod_image_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/display_calib.py to display_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/cspad_tbx.py to cspad_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hdf5.py to mod_hdf5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_code.py to mod_event_code.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter.py to mod_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_info.py to mod_event_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/common_mode.py to common_mode.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/parse_calib.py to parse_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_daq_status.py to mod_daq_status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_faster_histograms.py to xes_faster_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py to mod_onecolor_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_hybrid_rs.py to postrefinement_hybrid_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/spectra_filter.py to spectra_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_spots.py to display_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/einsle.py to einsle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/integrate_image_api.py to integrate_image_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/merging_utils.py to merging_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_legacy_rs.py to postrefinement_legacy_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py to cxi_cc.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py:132: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/data_utils.py to data_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/strong_zulu.py to strong_zulu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/status_plot.py to status_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/trials_plot.py to trials_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/wx_detectors.py to wx_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/trumpet_plot.py to trumpet_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_updated_rs.py to postrefinement_updated_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_powder_arcs.py to display_powder_arcs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/completeness_plot.py to completeness_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_factory.py to postrefinement_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/test_cluster.py to test_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/Cluster.py to Cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/SingleFrame.py to SingleFrame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/components.py to components.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/multiproc_temp_parame_opt.py to multiproc_temp_parame_opt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/graph.py to graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/parameter_optimizer.py to parameter_optimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/xfel_small_cell_process.py to xfel_small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_index.py to small_cell_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/powder_from_spots.py to powder_from_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot.py to cake_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_process.py to small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot_prep.py to cake_plot_prep.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/candidate_cells.py to candidate_cells.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/powder_util.py to powder_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/small_cell.py to small_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/solve_orientation.py to solve_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/write_orientation_arrows.py to write_orientation_arrows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/sync_jf16m_geometry.py to sync_jf16m_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/jf16m_cxigeom2nexus.py to jf16m_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/metrology2phil.py to metrology2phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/cspad_cbf_tbx.py to cspad_cbf_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/simulate_partial_data.py to simulate_partial_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/singleframe.py to singleframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/api.py to api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_per_frame_wilson.py to cluster_per_frame_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_unit_cell.py to cluster_unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_visualise_orientations.py to cluster_visualise_orientations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_42.py to cluster_42.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_intensity_statistics.py to cluster_intensity_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster_groups.py to cluster_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/exercise_compression.py to exercise_compression.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/dump.py to dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/hybrid_times.py to hybrid_times.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/double_overflow.py to double_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py to nested_cpp_loops_with_check_signals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/divide_by_zero.py to divide_by_zero.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/inexact.py to inexact.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_platform_info.py to show_platform_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/int_overflow.py to int_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/gcd.py to gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/lcm.py to lcm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/segmentation_fault.py to segmentation_fault.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/std_pair.py to std_pair.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/tuple.py to tuple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/rational.py to rational.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/python.py to python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py to connected_component_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/clustering_algorithm.py to clustering_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/utility.py to utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py to min_cut_max_flow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/maximum_clique.py to maximum_clique.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py to minimum_cut_enumerate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/metric.py to metric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py to graph_structure_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/breadth_first_search.py to breadth_first_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/mod_isoform_cluster.py to mod_isoform_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/comparestats.py to comparestats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/spot_param_visualizer.py to spot_param_visualizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/ray_trace.py to ray_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/r_mtz_mtz.py to r_mtz_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/view_fineslices.py to view_fineslices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/iotacc.py to iotacc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/explore_twin_operators.py to explore_twin_operators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/cluster_isoform.py to cluster_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_run.py to mpi_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/print_integration_pickle.py to print_integration_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/frame_extractor_by_scan.py to frame_extractor_by_scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/compare_solution_pickles.py to compare_solution_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_scale.py to mpi_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plot_energy_spectrum.py to plot_energy_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/prime_gui.py to prime_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/solve_indexing_ambiguity.py to solve_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_path_indexing_ambiguity.py to change_path_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plotstats.py to plotstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/viewstats.py to viewstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_kmeans.py to mod_kmeans.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_indexing_ambiguity.py to mod_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py to mod_gui_frames.cpython-312.pyc /usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py:750: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_plotter.py to mod_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_outlier.py to mod_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_partiality.py to mod_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_dialogs.py to mod_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_pdb.py to mod_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_mx.py to mod_mx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_merge_data.py to mod_merge_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_run.py to mod_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_misc.py to mod_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_perf.py to mod_perf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_results.py to mod_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_leastsqr.py to mod_leastsqr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_threads.py to mod_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs_partiality.py to mod_lbfgs_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/tst_kokkos_lib.py to tst_kokkos_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py to tst_gpu_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_shoeboxes.py to tst_shoeboxes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_exafel_api.py to tst_exafel_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py to tst_nanoBragg_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py to tst_gaussian_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_input.py to nanoBragg_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py to nanoBragg_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py to nanoBragg_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py to nanoBragg_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py to tst_anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py to tst_nanoBragg_multipanel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py to tst_nanoBragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py to nanoBragg_beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py to anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py to tst_nanoBragg_pilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py to tst_gaussian_mosaicity2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py to tst_nanoBragg_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py to nanoBragg_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py to nanoBragg_gui_frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py to tst_gauss_argchk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_multisource_background.py to tst_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py to tst_nanoBragg_cbf_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/sim_data.py to sim_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/predictions.py to predictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py to FormatHDF5AttributeGeometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/forward_models.py to forward_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/parameters.py to parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py to stage_two_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py to orthorhombic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py to tetragonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py to monoclinic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py to hexagonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/base_refiner.py to base_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/attr_list.py to attr_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py to hopper_ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/device.py to device.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_io.py to hopper_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/parameter_errors.py to parameter_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/prep_stage2_input.py to prep_stage2_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py to ensemble_refine_launcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/psf.py to psf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_utils.py to hopper_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/stage_two_utils.py to stage_two_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_websocket.py to tst_websocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py to tst_HKLviewerQtGuiSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py to tst_HKLviewerQtGuiBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_hklinfo.py to tst_hklinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py to tst_HKLviewerOSbrowserSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tests_HKLviewer.py to tests_HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py to tst_HKLviewerOSbrowserBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/compare_datasets.py to compare_datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/visualize_r_factors.py to visualize_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/model_viewer.py to model_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/qttbx.view_structure.py to qttbx.view_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py to make_install_HKLviewer_ChimeraX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/hklview.py to hklview.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/multiplicity_viewer.py to multiplicity_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/xray_structure_viewer.py to xray_structure_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/map_viewer.py to map_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklview_frame.py to hklview_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py2.py to webbrowser_messenger_py2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtricorder_runner.py to xtricorder_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/cmdlineframes.py to cmdlineframes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/helpers.py to helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py3.py to webbrowser_messenger_py3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/display2.py to display2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/default_user_preset_buttons.py to default_user_preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtriage_runner.py to xtriage_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklviewer_gui.py to hklviewer_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/preset_buttons.py to preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/tool.py to tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt.py to qt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/jsview_3d.py to jsview_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt_chromium_check.py to qt_chromium_check.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/frames.py to frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_2d.py to view_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/comparison.py to comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_3d.py to view_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/development.py to development.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_anomrefine.py to tst_commandline_anomrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_refine.py to tst_commandline_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/conftest.py to conftest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/absolute_structure.py to absolute_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/benchmark_refinement.py to benchmark_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/masks.py to masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/anom_refine.py to anom_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_disorder.py to test_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_direction.py to test_direction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_occupancies.py to test_occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py to tst_constrained_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_same_group.py to test_same_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py to tst_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py to tst_reparametrisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_rigid.py to test_rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py to hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/fpfdp.py to fpfdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/site.py to site.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/rigid.py to rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py to origin_fixing_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/adp_restraints.py to adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/least_squares.py to least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py to tst_charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py to tst_ab_initio_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/charge_flipping.py to charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_convert_free_to_work.py to mtz_convert_free_to_work.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py to recalculate_phenix_refine_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/direct_methods_light.py to direct_methods_light.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_split_chains.py to pdb_split_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_hierarchy.py to pdb_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py to shelx_latt_sym_to_space_group_symbol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_to_map_simple.py to pdb_to_map_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/tst_mtz_free_flipper.py to tst_mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_symmetry_copies.py to pdb_symmetry_copies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py to pdb_tardy_conf_sampling_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/libtbx_phil_examples.py to libtbx_phil_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py to pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_shake.py to pdb_shake.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/prepare_model_for_rsr.py to prepare_model_for_rsr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_free_flipper.py to mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/symmetry.py to symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py to tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_sort_atoms.py to tst_sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_segids.py to tst_mmcif_segids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_2.py to tst_map_model_manager_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_box_around_molecule.py to tst_box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phases.py to tst_phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_extract_xtal_data.py to tst_extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_parser.py to tst_simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_3.py to tst_map_model_manager_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py to tst_pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_data_cif.py to tst_split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py to tst_map_model_manager_tls_from_map_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_utils.py to tst_reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py to tst_hierarchy_long_resname_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py to tst_hierarchy_copy_select.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_show_systematic_absences.py to tst_show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py to tst_hierarchy_long_resname_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py to tst_hierarchy_occupancies_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_1.py to tst_cif_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_models.py to tst_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_tools.py to tst_map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py to tst_hierarchy_long_chain_ids_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py to tst_cif_as_pdb_1atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py to tst_map_model_manager_half_map_sharpening_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_lattice_symmetry.py to tst_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py to tst_hierarchy_forward_compatible_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_link_records.py to tst_pdb_link_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_cif.py to tst_pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py to tst_mmcif_to_from_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py to tst_hierarchy_long_resname_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_map_coefficients.py to tst_simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_bioinformatics.py to tst_bioinformatics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_input.py to tst_ncs_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs.py to tst_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py to tst_ncs_user_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py to tst_ncs_without_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py to tst_mmcif_biomt_reduction_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py to tst_ncs_search_broken_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py to tst_ncs_reordered_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py to tst_ncs_groups_preprocessing.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py:409: SyntaxWarning: invalid escape sequence '\P' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py to tst_ncs_search_ligs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py to tst_mtrix_biomt_cmdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_atom_selections_10k.py to tst_atom_selections_10k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cli_parser.py to tst_cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_multimodel.py to tst_mmcif_multimodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_group_rounding.py to tst_group_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_fetch.py to tst_fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py to tst_selected_hierarchy_flip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_fasta.py to tst_pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager_wrapping.py to tst_map_manager_wrapping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mtz_as_cif.py to tst_mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager.py to tst_map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_patterson.py to tst_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py to tst_hierarchy_long_resname_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py to tst_hierarchy_pdb_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py to tst_export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_add_conformations.py to tst_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_manager.py to tst_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_miller_sort_asu.py to tst_miller_sort_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_editor.py to tst_reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_merging_statistics.py to tst_merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_wildcard.py to tst_wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py to tst_map_model_manager_external_sharpening_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_generate_n_char_string.py to tst_generate_n_char_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_reader.py to tst_reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py to tst_crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py to tst_map_model_manager_model_sharpening_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py to tst_map_model_manager_call_consistency.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py to tst_pdb_cif_inputs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_poscar.py to tst_poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_4.py to tst_map_model_manager_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_symmetry.py to tst_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reindex.py to tst_reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_id_str.py to tst_hierarchy_id_str.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_plots.py to tst_data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_all_chain_ids.py to tst_all_chain_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_restraints_merge.py to tst_restraints_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phil.py to tst_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_file_reader.py to tst_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_csv_utils.py to tst_csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager.py to tst_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_xray_scale.py to tst_xray_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/hklf.py to hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_lex_parse_build.py to tst_lex_parse_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/write_ins.py to write_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fcf.py to fcf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/writer.py to writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tokens.py to tokens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fvar_encoding.py to fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/parsers.py to parsers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/lexer.py to lexer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py to crystal_symmetry_from_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_hklf.py to tst_hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_fvar_encoding.py to tst_fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_writer.py to tst_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pymol.py to pymol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/write_pcr.py to write_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/read_pcr.py to read_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/fpfm_reader.py to fpfm_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/simple_map_coefficients.py to simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/get_pubmed_citation.py to get_pubmed_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif_as_pdb.py to cif_as_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.reflection_reader.py to cns.reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.validate.py to cif.validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_fasta.py to pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/xplor.map.show_summary.py to xplor.map.show_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/patterson_map.py to patterson_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cbf_read.py to cbf_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_xray_structure.py to cif.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py to flip_symmetric_amino_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_distances.py to show_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.b_factor_stats.py to pdb.b_factor_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py to r_free_flags_completion_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.dump_as_python.py to shelx.dump_as_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.hierarchy.py to pdb.hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/blast_pdb.py to blast_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_add_conformations.py to pdb_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.join_fragment_files.py to pdb.join_fragment_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz.dump.py to mtz.dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_get_citation.py to pdb_get_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/sort_atoms.py to sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dano_as_amplitudes.py to dano_as_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_systematic_absences.py to show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py to cns.transfer_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtrix_reconstruction.py to mtrix_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.sdb_reader.py to cns.sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_split_models.py to pdb_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.print_sequence.py to pdb.print_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_as_cns.py to r_free_flags_as_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/effective_resolution.py to effective_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_comparison.py to pdb_labels_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/detector_image_as_png.py to detector_image_as_png.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.insert_scale_records.py to pdb.insert_scale_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/export_scalepack_unmerged.py to export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.box_around_molecule.py to pdb.box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py to explore_metric_symmetry.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:339: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:341: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py to pdb.link_as_geometry_restraints_edits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.as_xray_structure.py to pdb.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_miller_arrays.py to cif.as_miller_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_statistics.py to reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_remediator.py to pdb_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_accumulation.py to r_free_flags_accumulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_xray_structure.py to shelx.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_cif.py to shelx.as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/biomt_reconstruction.py to biomt_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_diff.py to pdb_labels_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz_as_cif.py to mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/build_phil_cache.py to build_phil_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/isomorphous_difference_patterson.py to isomorphous_difference_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py to pdb.superpose_atoms_by_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/poscar_as_xray_structure.py to poscar_as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/csv_as_mtz.py to csv_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns_as_mtz.py to cns_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_show_connectivity.py to pdb_show_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py to pdb.superpose_centers_of_mass.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dtrek.to_cns.py to dtrek.to_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_plots.py to data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py to crystal_symmetry_from_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/tst_xplormap.py to tst_xplormap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif_mtz_data_labels.py to cif_mtz_data_labels.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_utils.py to crystal_symmetry_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/space_group_symbols.py to space_group_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py to crystal_symmetry_from_sdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_reader.py to sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/index_fobs_sigma_reader.py to index_fobs_sigma_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/tst_cns.py to tst_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/reflection_reader.py to reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/pdb_remarks.py to pdb_remarks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_writer.py to sdb_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/map_coefficients.py to map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/restraint.py to restraint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/ncs_spec.py to ncs_spec.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/common.py to common.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/real_map.py to real_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtrix_biomt.py to mtrix_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py to crystal_symmetry_from_ref.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py to dtrek_symmetry_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/reflnlist_reader.py to reflnlist_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/simple_parser.py to simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/reflections.py to reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/models.py to models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/cif_conversions.py to cif_conversions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/import_data_and_flags.py to import_data_and_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_pdb.py to tst_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_name_interpretation.py to atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py to utils.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:7: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:45: SyntaxWarning: invalid escape sequence '\/' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdbe.py to pdbe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py to tst_extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py to forward_compatible_pdb_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy.py to tst_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/web_service_api.py to web_service_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py to tst_mmcif_hierarchy_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/aa_utils.py to aa_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py to tst_mmcif_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py to tst_atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection.py to tst_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py to tst_rna_dna_atom_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py to crystal_symmetry_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hierarchy.py to hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_rna_dna_names.py to modified_rna_dna_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure.py to tst_secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/misc_records_output.py to misc_records_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/remediator.py to remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/tst_remediator.py to tst_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py to tst_hierarchy_atom_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/cryst1_interpretation.py to cryst1_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py to extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rna_dna_detection.py to rna_dna_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_2_interpretation.py to remark_2_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/fetch.py to fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/experiment_type.py to experiment_type.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/records.py to records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py to pdb_v3_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hybrid_36.py to hybrid_36.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif.py to tst_mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_aa_names.py to modified_aa_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/secondary_structure.py to secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/amino_acid_codes.py to amino_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py to tst_hierarchy_flip_symmetric_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/mmcif.py to mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure_2.py to tst_secondary_structure_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_3_interpretation.py to remark_3_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py to tst_read_mtrix_records_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/nucleic_acid_codes.py to nucleic_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection_string.py to tst_atom_selection_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py to tst_hierarchy_flip_symmetric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rcsb.py to rcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/download.py to download.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_290_interpretation.py to remark_290_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/csv_utils.py to csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/extract_xtal_data.py to extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/format.py to format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_model_manager.py to map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py to ncbi_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/homologues.py to homologues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ebi_wu_blast_xml.py to ebi_wu_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/xmlbuild.py to xmlbuild.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/local_blast.py to local_blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pdb_info.py to pdb_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/alignment_as_hsearch.py to alignment_as_hsearch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/wildcard.py to wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_manager.py to map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders_depending_on_smtbx.py to builders_depending_on_smtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/poscar.py to poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_debug_write.py to tst_debug_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/noir.py to noir.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger.py to eiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_mar.py to test_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/marIP.py to marIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc.py to adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger_minicbf.py to eiger_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/dtrek.py to dtrek.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/active_area_filter.py to active_area_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/bruker.py to bruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_module.py to adsc_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py to tst_cbf_comp_read_meth.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/edf.py to edf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_py_cbf.py to tst_py_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_minicbf.py to adsc_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/mar.py to mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/beam_center_convention.py to beam_center_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_adsc.py to tst_adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/detectorbase.py to detectorbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cspad_detector_formats.py to cspad_detector_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_detectors.py to tst_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/camera_convention.py to camera_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py to endstation_max_iv_trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/config_detector.py to config_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation.py to endstation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/spot_xy_convention.py to spot_xy_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxisbase.py to raxisbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_raxis2.py to test_raxis2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_slice.py to pilatus_slice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_minicbf.py to pilatus_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/macscience.py to macscience.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/filters.py to filters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/saturn.py to saturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis.py to raxis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis_nonsquare.py to raxis_nonsquare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/url_support.py to url_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/npy.py to npy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/hamamatsu.py to hamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cbf.py to cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/image_from_http_request.py to image_from_http_request.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/strudat.py to strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/tst_strudat.py to tst_strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_utils.py to reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/box_around_molecule.py to box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py to tst_extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py to crystal_symmetry_from_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_unmerged.py to tst_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_miller_dict.py to tst_miller_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_dano.py to tst_dano.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py to extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phases.py to phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/blank_cbf.py to blank_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/integrate_hkl.py to integrate_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/read_ascii.py to read_ascii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xparm.py to xparm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/gain_cbf.py to gain_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_inp.py to xds_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_cbf.py to xds_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/correction.py to correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/spot_xds.py to spot_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/logfiles.py to logfiles.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:19: SyntaxWarning: invalid escape sequence '\%' /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:474: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/cod_tools.py to cod_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraint_file_merge.py to restraint_file_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py to crystal_symmetry_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cli_parser.py to cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ranges.py to ranges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/space_group_dictionary.py to space_group_dictionary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/no_merge_original_index.py to no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py to tst_no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_merge.py to tst_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info writing src/dxtbx.egg-info/PKG-INFO writing dependency_links to src/dxtbx.egg-info/dependency_links.txt writing entry points to src/dxtbx.egg-info/entry_points.txt writing top-level names to src/dxtbx.egg-info/top_level.txt reading manifest file 'src/dxtbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' adding license file 'AUTHORS' writing manifest file 'src/dxtbx.egg-info/SOURCES.txt' Copying src/dxtbx.egg-info to /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx-3.17.0.egg-info Skipping SOURCES.txt running install_scripts Installing cxi.image2pickle script to /<>/debian/tmp/usr/bin Installing cxi.image_average script to /<>/debian/tmp/usr/bin Installing dev.dxtbx.debug_memory script to /<>/debian/tmp/usr/bin Installing dev.dxtbx.read_sequence script to /<>/debian/tmp/usr/bin Installing dxtbx.depends_on script to /<>/debian/tmp/usr/bin Installing dxtbx.detector_superpose script to /<>/debian/tmp/usr/bin Installing dxtbx.display_parallax_correction script to /<>/debian/tmp/usr/bin Installing dxtbx.dlsnxs2cbf script to /<>/debian/tmp/usr/bin Installing dxtbx.image2pickle script to /<>/debian/tmp/usr/bin Installing dxtbx.image_average script to /<>/debian/tmp/usr/bin Installing dxtbx.install_format script to /<>/debian/tmp/usr/bin Installing dxtbx.overload script to /<>/debian/tmp/usr/bin Installing dxtbx.plot_detector_models script to /<>/debian/tmp/usr/bin Installing dxtbx.print_header script to /<>/debian/tmp/usr/bin Installing dxtbx.print_matching_images script to /<>/debian/tmp/usr/bin Installing dxtbx.radial_average script to /<>/debian/tmp/usr/bin Installing dxtbx.saturation script to /<>/debian/tmp/usr/bin Installing dxtbx.show_mask_info script to /<>/debian/tmp/usr/bin Installing dxtbx.show_matching_formats script to /<>/debian/tmp/usr/bin Installing dxtbx.show_registry script to /<>/debian/tmp/usr/bin # specific installation for the cctbx build directory dh_auto_install -- -s custom --install-args="debian/install-cctbx.sh -- --pyver={version} --srcdir=/<> --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx'" install -m0755 -d /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.12 -s custom "--install-args=debian/install-cctbx.sh -- --pyver={version} --srcdir=/<> --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx'" --dest-dir /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp I: pybuild base:311: debian/install-cctbx.sh -- --pyver=3.12 --srcdir=/<> --builddir='/<>/.pybuild/cpython3_3.12/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' debian/install-cctbx.sh: line 7: 0: command not found --pyver '3.12' --srcdir '/<>' --builddir '/<>/.pybuild/cpython3_3.12/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' -- Intalling CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx From the source /<> build /<>/.pybuild/cpython3_3.12/build_ To the FHS : pyver 3.12 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.12 libdir /usr/lib/aarch64-linux-gnu pythondir /usr/lib/python3.12/dist-packages Copying libtbx_env from /<>/.pybuild/cpython3_3.12/build_ to /<>/debian/tmp/usr/lib/cctbx/python3.12 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/mmtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/spotfinder.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/rstbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/serialtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/wxtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/boost.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/omptbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cma_es.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/fable.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/scitbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/annlib.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cbflib.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/ccp4io.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cctbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/crys3d.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/iotbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/gltbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/mmtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/rstbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/serialtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.exec"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/exec.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.find_untested"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/find_untested.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.refresh"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/refresh.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.path_utility"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/path_utility.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.git_avoid_merges"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/git_avoid_merges.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.bundle_as_selfx"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/bundle_as_selfx.csh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.create_mac_app"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/create_mac_app.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.find_unused_imports_crude"): 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relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/annlib.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cbflib.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/ccp4io.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cctbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/crys3d.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/smtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/iotbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/gltbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py")}, 'bin_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin"), 'boost_version': 108300, 'build_options': , 'build_path': absolute_path("/<>/debian/tmp/usr/lib/cctbx/python3.12"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="exe"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="include"), 'installed': False, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'king', 'reduce', 'probe', 'cbflib', 'docutils'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../annlib"), 'annlib_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../annlib_adaptbx"), 'boost': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../boost"), 'boost_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../cctbx"), 'chiltbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../wxtbx")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), 'python_version_major_minor': (3, 12), 'pythonpath': [relocatable_path(anchor="/<>/.pybuild/cpython3_3.12/build_", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../.."), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="lib"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/lib/python3.12/dist-packages"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/local/lib/python3.12/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../..")], 'scons_dist_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr")} Saved /<>/debian/tmp/usr/lib/cctbx/python3.12/libtbx_env env {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/usr", relocatable="bin/distl.thin_client"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder/command_line/thin_client.py"), relocatable_path(anchor="/usr", relocatable="bin/distl.sweep_strength"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder/command_line/sweep_strength.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.explore_completeness"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.explore_completeness.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.inspect_r_free_flags"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/inspect_r_free_flags.py"), relocatable_path(anchor="/usr", relocatable="bin/distl.image_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder/command_line/image_viewer.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.wx_display"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.wx_display.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.cablam"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/cablam.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.example_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/example_viewer.py"), relocatable_path(anchor="/usr", relocatable="bin/distl.find_active_area"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder/command_line/find_active_area.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.remove_outliers"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/remove_outliers.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.wxpython"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/wxpython.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.rama_z"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/rama_z.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.table_one"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/table_one.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.fest"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/fest.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.create"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.create.py"), relocatable_path(anchor="/usr", relocatable="bin/distl.signal_strength"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder/command_line/signal_strength.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.image_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/viewer.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.index"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/index.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.solver"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.solver.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.image_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/slip_viewer.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_file_info"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/show_file_info.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.pdb_statistics"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/pdb_statistics.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.xtriage"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/xtriage.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.xtriage_gui"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/xtriage.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.pdb_editor"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/pdb_editor.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.plot_anomalous_scattering"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.validate_waters"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/validate_waters.py"), relocatable_path(anchor="/usr", relocatable="bin/molprobity.undowser_validation"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/undowser.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.xmanip"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/xmanip.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.rama_z"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/rama_z.py"), relocatable_path(anchor="/usr", relocatable="bin/molprobity.cablam"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/cablam.py"), relocatable_path(anchor="/usr", relocatable="bin/distl.mp_spotfinder_server_read_file"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.undowser_validation"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/undowser.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.secondary_structure_validation"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/secondary_structure_validation.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.secondary_structure_restraints"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/secondary_structure_restraints.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.fab_elbow_angle"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/fab_elbow_angle.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.afitt"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/afitt.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.mp_geo"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/mp_geo.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.validate_H"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/validate_H_cl_app.py"), relocatable_path(anchor="/usr", relocatable="bin/molprobity.cbetadev"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/cbetadev.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.cbetadev"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/cbetadev.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.afitt_fd"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/afitt_fd.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.perigee"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/perigee.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.rebuild_cablam_cache"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py"), relocatable_path(anchor="/usr", relocatable="bin/molprobity.omegalyze"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/omegalyze.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.omegalyze"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/omegalyze.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.fmodel_simple"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/fmodel_simple.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.process_predicted_model"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.process_predicted_model"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.model_model_distances"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/model_model_distances.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.ringer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/ringer.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.massage_data"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/massage_data.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.arginine_geometry"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/arginine_geometry.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.cc_star"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/cc_star.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.models_as_chains"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/models_as_chains.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.rigid_bond_test"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/rigid_bond_test.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.map_box"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/map_box.py"), 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relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/serialtbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.12"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.exec"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/exec.sh"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.print_matching_images"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_matching_images.py"), relocatable_path(anchor="/usr", relocatable="bin/cxi.image_average"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.anomalous_differences_histogram"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.loggraph"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/loggraph.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.bfactor_plot"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/b_plot.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.plan_sad_experiment"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/plan_sad_experiment.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.image_average"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py")}, 'bin_path': relocatable_path(anchor="/usr", relocatable="bin"), 'boost_version': 108300, 'build_options': , 'build_path': absolute_path("/usr/lib/cctbx/python3.12"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/usr", relocatable="bin"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/usr", relocatable="include"), 'installed': True, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/usr", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'king', 'reduce', 'probe', 'cbflib', 'docutils'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib"), 'annlib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib_adaptbx"), 'boost': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost"), 'boost_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx"), 'chiltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/chiltbx"), 'cma_es': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cma_es"), 'crys3d': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d"), 'dxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx"), 'fable': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/fable"), 'gltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/gltbx"), 'iotbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx"), 'libtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx"), 'mmtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx"), 'omptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/omptbx"), 'rstbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx"), 'scitbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/scitbx"), 'serialtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/serialtbx"), 'smtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/smtbx"), 'spotfinder': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder"), 'tbxx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/tbxx"), 'ucif': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ucif"), 'wxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': True, 'path_utility': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/usr", relocatable="bin/python3.12"), 'python_version_major_minor': (3, 12), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 16,421,528 bytes received 568 bytes 32,844,192.00 bytes/sec total size is 16,409,784 speedup is 1.00 building file list ... done ./ libann_adaptor.so -> libann_adaptor.so.0.0.1 libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 libann_adaptor.so.0.0.1 libasymmetric_map.so -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so -> libcbf-private.so.0.0.1 libcbf-private.so.0 -> libcbf-private.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so -> libccp4io.so.0.0.1 libccp4io.so.0 -> libccp4io.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so -> libcctbx.so.0.0.1 libcctbx.so.0 -> libcctbx.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so -> libomptbx.so.0.0.1 libomptbx.so.0 -> libomptbx.so.0.0.1 libomptbx.so.0.0.1 librstbx.so -> librstbx.so.0.0.1 librstbx.so.0 -> librstbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so -> libspotfinder.so.0.0.1 libspotfinder.so.0 -> libspotfinder.so.0.0.1 libspotfinder.so.0.0.1 sent 52,490,938 bytes received 494 bytes 34,994,288.00 bytes/sec total size is 52,475,138 speedup is 1.00 building file list ... done annlib_adaptbx/ annlib_adaptbx/ann_adaptor.h sent 2,232 bytes received 38 bytes 4,540.00 bytes/sec total size is 2,068 speedup is 0.91 building file list ... done boost_adaptbx/ boost_adaptbx/boost_range_python.hpp boost_adaptbx/convertible.h boost_adaptbx/exporting.hpp boost_adaptbx/floating_point_exceptions.h boost_adaptbx/hash.h boost_adaptbx/iterator_range.h boost_adaptbx/optional_conversions.h boost_adaptbx/precompiled.h boost_adaptbx/python_streambuf.h boost_adaptbx/std_pair_conversion.h boost_adaptbx/std_pair_fwd.h boost_adaptbx/swig_arg.hpp boost_adaptbx/tuple_conversion.h boost_adaptbx/graph/ boost_adaptbx/graph/graph_export_adaptor.hpp boost_adaptbx/graph/graph_type.hpp boost_adaptbx/graph/maximum_clique_greedy.hpp boost_adaptbx/graph/maximum_clique_rascal.hpp boost_adaptbx/graph/vertex_map.hpp boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy.h sent 73,846 bytes received 386 bytes 148,464.00 bytes/sec total size is 72,301 speedup is 0.97 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/basic.h cbflib_adaptbx/detectors/buffer_based_service.h cbflib_adaptbx/detectors/cbf_adaptor.h cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h cbflib_adaptbx/detectors/mar_adaptor.h cbflib_adaptbx/detectors/boost_python/ cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h cbflib_adaptbx/detectors/boost_python/general_cbf_write.h sent 22,333 bytes received 158 bytes 44,982.00 bytes/sec total size is 21,656 speedup is 0.96 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/ccp4_ccplib_fem.hpp ccp4io_adaptbx/ccp4_diskio_fem.hpp ccp4io_adaptbx/ccp4_fftlib_fem.hpp ccp4io_adaptbx/ccp4_library_fem.hpp ccp4io_adaptbx/ccp4_maplib_fem.hpp ccp4io_adaptbx/ccp4_mtzlib_fem.hpp ccp4io_adaptbx/ccp4_other_fem.hpp ccp4io_adaptbx/ccp4_parser_f.h ccp4io_adaptbx/ccp4_parser_fem.hpp ccp4io_adaptbx/ccp4_symlib_fem.hpp ccp4io_adaptbx/cmaplib_f.h ccp4io_adaptbx/cmtzlib_f.h ccp4io_adaptbx/csymlib_f.h ccp4io_adaptbx/library_f.h ccp4io_adaptbx/printf_wrappers.h ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/fftlib.hpp sent 87,988 bytes received 326 bytes 176,628.00 bytes/sec total size is 86,683 speedup is 0.98 building file list ... done cctbx/ cctbx/adptbx.h cctbx/anharmonic.h cctbx/coordinates.h cctbx/crystal_orientation.h cctbx/cumulative_intensity_distribution.h cctbx/error.h cctbx/french_wilson.h cctbx/hendrickson_lattman.h cctbx/import_scitbx_af.h cctbx/miller.h cctbx/restraints.h cctbx/tagged_value.h cctbx/uctbx.h cctbx/adp_restraints/ cctbx/adp_restraints/adp_restraints.h cctbx/adp_restraints/adp_similarity.h cctbx/adp_restraints/aniso_restraints.h cctbx/adp_restraints/fixed_u_eq_adp.h cctbx/adp_restraints/isotropic_adp.h cctbx/adp_restraints/rigid_bond.h cctbx/adp_restraints/rigu.h cctbx/adptbx/ cctbx/adptbx/hirshfeld.h cctbx/covariance/ cctbx/covariance/covariance.h cctbx/crystal/ cctbx/crystal/asu_clusters.h cctbx/crystal/close_packing.h cctbx/crystal/coordination_sequences.h cctbx/crystal/direct_space_asu.h cctbx/crystal/incremental_pairs.h cctbx/crystal/namespace.h cctbx/crystal/neighbors_fast.h cctbx/crystal/neighbors_simple.h cctbx/crystal/pair_tables.h cctbx/crystal/site_cluster_analysis.h cctbx/crystal/symmetry.h cctbx/crystal/workarounds_bpl.h cctbx/dmtbx/ cctbx/dmtbx/triplet_generator.h cctbx/dmtbx/triplet_phase_relation.h cctbx/eltbx/ cctbx/eltbx/attenuation_coefficient.h cctbx/eltbx/basic.h cctbx/eltbx/chemical_elements.h cctbx/eltbx/covalent_radii.h cctbx/eltbx/electron_scattering.h cctbx/eltbx/fp_fdp.h cctbx/eltbx/henke.h cctbx/eltbx/icsd_radii.h cctbx/eltbx/neutron.h cctbx/eltbx/sasaki.h cctbx/eltbx/tiny_pse.h cctbx/eltbx/wavelengths.h cctbx/eltbx/xray_scattering.h cctbx/eltbx/xray_scattering/ cctbx/eltbx/xray_scattering/form_factor.h cctbx/eltbx/xray_scattering/gaussian.h cctbx/eltbx/xray_scattering/n_gaussian.h cctbx/eltbx/xray_scattering/n_gaussian_raw.h cctbx/examples/ cctbx/examples/merging/ cctbx/examples/merging/postrefine_base.h cctbx/examples/merging/xscale_prototype_core.h cctbx/geometry/ cctbx/geometry/geometry.h cctbx/geometry_restraints/ cctbx/geometry_restraints/angle.h cctbx/geometry_restraints/asu_cache.h cctbx/geometry_restraints/bond.h cctbx/geometry_restraints/bond_misc.h cctbx/geometry_restraints/bond_similarity.h cctbx/geometry_restraints/bond_sorted.h cctbx/geometry_restraints/chirality.h cctbx/geometry_restraints/dihedral.h cctbx/geometry_restraints/motif.h cctbx/geometry_restraints/namespace.h cctbx/geometry_restraints/nonbonded.h cctbx/geometry_restraints/nonbonded_sorted.h cctbx/geometry_restraints/parallelity.h cctbx/geometry_restraints/planarity.h cctbx/geometry_restraints/proxy_select.h cctbx/geometry_restraints/shared_wrapper_pickle.hpp cctbx/geometry_restraints/sorted_asu_proxies.h cctbx/geometry_restraints/utils.h cctbx/maptbx/ cctbx/maptbx/asymmetric_map.h cctbx/maptbx/average_densities.h cctbx/maptbx/connectivity.h cctbx/maptbx/coordinate_transformers.h cctbx/maptbx/copy.h cctbx/maptbx/fft.h cctbx/maptbx/fsc.h cctbx/maptbx/ft_analytical_1d_point_scatterer_at_origin.h cctbx/maptbx/grid_indices_around_sites.h cctbx/maptbx/grid_tags.h cctbx/maptbx/gridding.h cctbx/maptbx/histogram.h cctbx/maptbx/interpolation.h cctbx/maptbx/loft.h cctbx/maptbx/map_accumulator.h cctbx/maptbx/marked_grid_points.h cctbx/maptbx/mask.h cctbx/maptbx/mask_utils.h cctbx/maptbx/namespace.h cctbx/maptbx/peak_search.h cctbx/maptbx/resolution.h cctbx/maptbx/skeletons.h cctbx/maptbx/sphericity.h cctbx/maptbx/standard_deviations_around_sites.hpp cctbx/maptbx/statistics.h cctbx/maptbx/structure_factors.h cctbx/maptbx/target_and_gradients.h cctbx/maptbx/utils.h cctbx/maptbx/accessors/ cctbx/maptbx/accessors/c_grid_p1.h cctbx/maptbx/accessors/c_grid_padded_p1.h cctbx/maptbx/bcr/ cctbx/maptbx/bcr/bcr.h cctbx/masks/ cctbx/masks/around_atoms.h cctbx/masks/flood_fill.h cctbx/math/ cctbx/math/array_utils.h cctbx/math/cos_sin_table.h cctbx/math/loop_n_from_m.h cctbx/math/mod.h cctbx/miller/ cctbx/miller/amplitude_normalisation.h cctbx/miller/asu.h cctbx/miller/bins.h cctbx/miller/change_basis.h cctbx/miller/expand_to_p1.h cctbx/miller/f_calc_map.h cctbx/miller/index_generator.h cctbx/miller/index_span.h cctbx/miller/lookup_utils.h cctbx/miller/match.h cctbx/miller/match_bijvoet_mates.h cctbx/miller/match_indices.h cctbx/miller/match_multi_indices.h cctbx/miller/math.h cctbx/miller/merge_equivalents.h cctbx/miller/phase_integrator.h cctbx/miller/phase_transfer.h cctbx/miller/randomize_amplitude_and_phase.h cctbx/miller/slices.h cctbx/miller/sym_equiv.h cctbx/miller/union_of_indices.h cctbx/multipolar/ cctbx/multipolar/aspherical.h cctbx/sgtbx/ cctbx/sgtbx/basic.h cctbx/sgtbx/brick.h cctbx/sgtbx/change_of_basis_op.h cctbx/sgtbx/find_affine.h cctbx/sgtbx/group_codes.h cctbx/sgtbx/lattice_symmetry.h cctbx/sgtbx/lattice_tr.h cctbx/sgtbx/miller_ops.h cctbx/sgtbx/operator_from_axis_direction.h cctbx/sgtbx/parse_string.h cctbx/sgtbx/phase_info.h cctbx/sgtbx/reciprocal_space_asu.h cctbx/sgtbx/reciprocal_space_reference_asu.h cctbx/sgtbx/reference_settings.h cctbx/sgtbx/rot_mx.h cctbx/sgtbx/rot_mx_hash.h cctbx/sgtbx/rot_mx_info.h cctbx/sgtbx/rotation_matrices.h cctbx/sgtbx/row_echelon_solve.h cctbx/sgtbx/rt_mx.h cctbx/sgtbx/rt_mx_hash.h cctbx/sgtbx/search_symmetry.h cctbx/sgtbx/select_generators.h cctbx/sgtbx/seminvariant.h cctbx/sgtbx/site_constraints.h cctbx/sgtbx/site_symmetry.h cctbx/sgtbx/site_symmetry_table.h cctbx/sgtbx/smith_normal_form.h cctbx/sgtbx/space_group.h cctbx/sgtbx/space_group_hash.h cctbx/sgtbx/space_group_type.h cctbx/sgtbx/sym_equiv_sites.h cctbx/sgtbx/symbols.h cctbx/sgtbx/sys_abs_equiv.h cctbx/sgtbx/tensor_rank_2.h cctbx/sgtbx/tensors.h cctbx/sgtbx/tr_group.h cctbx/sgtbx/tr_group_hash.h cctbx/sgtbx/tr_vec.h cctbx/sgtbx/tr_vec_hash.h cctbx/sgtbx/utils.h cctbx/sgtbx/wyckoff.h cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h cctbx/sgtbx/direct_space_asu/proto/cut.h cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.h cctbx/sgtbx/direct_space_asu/proto/expressions.h cctbx/sgtbx/direct_space_asu/proto/facet_collection.h cctbx/sgtbx/direct_space_asu/proto/reference_table.h cctbx/sgtbx/direct_space_asu/proto/shortcuts.h cctbx/sgtbx/direct_space_asu/proto/small_vec_math.h cctbx/symmetry_search/ cctbx/symmetry_search/translation_refinement.h cctbx/translation_search/ cctbx/translation_search/fast_nv1995.h cctbx/translation_search/fast_terms.h cctbx/translation_search/namespace.h cctbx/translation_search/symmetry_flags.h cctbx/translation_search/fast_nv1995/ cctbx/translation_search/fast_nv1995/combinations.h cctbx/translation_search/fast_nv1995/intermediates.h cctbx/translation_search/fast_nv1995/summations.h cctbx/uctbx/ cctbx/uctbx/fast_minimum_reduction.h cctbx/uctbx/determine_unit_cell/ cctbx/uctbx/determine_unit_cell/NCDist.h cctbx/xray/ cctbx/xray/conversions.h cctbx/xray/curvatures_simple.h cctbx/xray/each_hkl_gradients_direct.h cctbx/xray/extinction.h cctbx/xray/f_model.h cctbx/xray/fast_gradients.h cctbx/xray/gradient_flags.h cctbx/xray/gradients_direct.h cctbx/xray/grouped_data.h cctbx/xray/hr_ht_cache.h cctbx/xray/minimization.h cctbx/xray/observations.h cctbx/xray/packing_order.h cctbx/xray/parameter_map.h cctbx/xray/sampled_model_density.h cctbx/xray/sampling_base.h cctbx/xray/sampling_loop.h cctbx/xray/scatterer.h cctbx/xray/scatterer_flags.h cctbx/xray/scatterer_utils.h cctbx/xray/scattering_type_registry.h cctbx/xray/sigmaa.h cctbx/xray/structure_factors_direct.h cctbx/xray/structure_factors_simple.h cctbx/xray/targets.h cctbx/xray/twin_component.h cctbx/xray/twin_targets.h cctbx/xray/targets/ cctbx/xray/targets/common_results.h cctbx/xray/targets/correlation.h cctbx/xray/targets/least_squares.h cctbx/xray/targets/mlf.h cctbx/xray/targets/mlhl.h cctbx/xray/targets/mli.h cctbx/xray/targets/shelxl_wght_ls.hpp sent 1,904,337 bytes received 4,420 bytes 3,817,514.00 bytes/sec total size is 1,887,271 speedup is 0.99 building file list ... done cma_es/ cma_es/cma/ cma_es/cma/cmaes.h cma_es/cma/cmaes_interface.h sent 6,886 bytes received 60 bytes 13,892.00 bytes/sec total size is 6,671 speedup is 0.96 building file list ... done sent 192 bytes received 12 bytes 408.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done dxtbx/ dxtbx/error.h dxtbx/imageset.h dxtbx/array_family/ dxtbx/array_family/flex_table.h dxtbx/array_family/flex_table_suite.h dxtbx/array_family/ref_pickle_double_buffered.h dxtbx/boost_python/ dxtbx/boost_python/compression.h dxtbx/format/ dxtbx/format/image.h dxtbx/format/boost_python/ dxtbx/format/boost_python/cbf_read_buffer.h dxtbx/masking/ dxtbx/masking/goniometer_shadow_masking.h dxtbx/masking/masking.h dxtbx/model/ dxtbx/model/beam.h dxtbx/model/crystal.h dxtbx/model/detector.h dxtbx/model/experiment.h dxtbx/model/experiment_list.h dxtbx/model/goniometer.h dxtbx/model/kappa_goniometer.h dxtbx/model/model_helpers.h dxtbx/model/multi_axis_goniometer.h dxtbx/model/panel.h dxtbx/model/panel_data.h dxtbx/model/parallax_correction.h dxtbx/model/pixel_to_millimeter.h dxtbx/model/ray_intersection.h dxtbx/model/scan.h dxtbx/model/scan_helpers.h dxtbx/model/spectrum.h dxtbx/model/virtual_panel.h dxtbx/model/boost_python/ dxtbx/model/boost_python/pickle_suite.h dxtbx/model/boost_python/to_from_dict.h sent 379,950 bytes received 610 bytes 761,120.00 bytes/sec total size is 377,522 speedup is 0.99 building file list ... done ./ fem.hpp noexcept_false.hpp fem/ fem/arr.hpp fem/arr_and_str_indices.hpp fem/arr_ref.hpp fem/arr_size.hpp fem/close_chain.hpp fem/common.hpp fem/data.hpp fem/data_of_type.hpp fem/data_type_star.hpp fem/dimension.hpp fem/do.hpp fem/error_utils.hpp fem/file_positioning_chain.hpp fem/format.hpp fem/inquire_chain.hpp fem/intrinsics.hpp fem/intrinsics_extra.hpp fem/io.hpp fem/io_exceptions.hpp fem/main.hpp fem/major_types.hpp fem/open_chain.hpp fem/read.hpp fem/size_t.hpp fem/star.hpp fem/stop.hpp fem/str.hpp fem/str_arr_ref.hpp fem/str_ref.hpp fem/variant.hpp fem/write.hpp fem/zero.hpp fem/utils/ fem/utils/char.hpp fem/utils/double_to_string.hpp fem/utils/equivalence.hpp fem/utils/int_types.hpp fem/utils/misc.hpp fem/utils/path.hpp fem/utils/random.hpp fem/utils/real_as_string.hpp fem/utils/simple_streams.hpp fem/utils/string.hpp fem/utils/string_to_double.hpp fem/utils/string_to_double_fmt.hpp fem/utils/token.hpp sent 204,016 bytes received 918 bytes 136,622.67 bytes/sec total size is 200,764 speedup is 0.98 building file list ... done gltbx/ gltbx/error.h gltbx/error_utils.h gltbx/fonts_ucs.h gltbx/glext.h gltbx/include_opengl.h gltbx/pointer_args_bpl.h gltbx/quadrics.h gltbx/special_wrapper_support.h gltbx/util.h sent 598,781 bytes received 190 bytes 1,197,942.00 bytes/sec total size is 597,954 speedup is 1.00 building file list ... done iotbx/ iotbx/error.h iotbx/detectors/ iotbx/detectors/bruker.h iotbx/detectors/display.h iotbx/detectors/image_divider.h iotbx/detectors/scanbox.h iotbx/detectors/context/ iotbx/detectors/context/spot_xy_convention.h iotbx/dsn6/ iotbx/dsn6/dsn6.hpp iotbx/mtz/ iotbx/mtz/batch.h iotbx/mtz/column.h iotbx/mtz/crystal.h iotbx/mtz/dataset.h iotbx/mtz/object.h iotbx/pdb/ iotbx/pdb/common_residue_names.h iotbx/pdb/hierarchy.h iotbx/pdb/hierarchy_atoms.h iotbx/pdb/hierarchy_bpl.h iotbx/pdb/hybrid_36_c.h iotbx/pdb/hybrid_36_cpp.h iotbx/pdb/input.h iotbx/pdb/modified_aa_names.h iotbx/pdb/modified_rna_dna_names.h iotbx/pdb/namespace.h iotbx/pdb/rna_dna_atom_names.h iotbx/pdb/small_str.h iotbx/pdb/utils.h iotbx/pdb/write_utils.h iotbx/pdb/write_utils_bpl.h iotbx/pdb/xray_structure.h iotbx/shelx/ iotbx/shelx/hklf.h iotbx/xplor/ iotbx/xplor/map_reader.h iotbx/xplor/map_writer.h sent 269,555 bytes received 629 bytes 540,368.00 bytes/sec total size is 266,716 speedup is 0.99 building file list ... done sent 472 bytes received 12 bytes 968.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done mmtbx/ mmtbx/error.h mmtbx/import_scitbx_af.h mmtbx/alignment/ mmtbx/alignment/align.h mmtbx/alignment/alignment.h mmtbx/alignment/tables.h mmtbx/building/ mmtbx/building/loop_closure/ mmtbx/building/loop_closure/ccd.h mmtbx/bulk_solvent/ mmtbx/bulk_solvent/bulk_solvent.h mmtbx/bulk_solvent/mosaic.h mmtbx/cablam/ mmtbx/cablam/cablam_align_utils.h mmtbx/den/ mmtbx/den/den.h mmtbx/dynamics/ mmtbx/dynamics/dynamics.h mmtbx/f_model/ mmtbx/f_model/f_model.h mmtbx/geometry/ mmtbx/geometry/asa.hpp mmtbx/geometry/calculator.hpp mmtbx/geometry/clash.hpp mmtbx/geometry/containment.hpp mmtbx/geometry/flattening.hpp mmtbx/geometry/indexing.hpp mmtbx/geometry/overlap.hpp mmtbx/geometry/primitive.hpp mmtbx/geometry/sphere_surface_sampling.hpp mmtbx/geometry/boost_python/ mmtbx/geometry/boost_python/containment.hpp mmtbx/geometry/boost_python/indexing.hpp mmtbx/geometry_restraints/ mmtbx/geometry_restraints/ramachandran.h mmtbx/geometry_restraints/reference_coordinate.h mmtbx/hydrogens/ mmtbx/hydrogens/hydrogens.h mmtbx/masks/ mmtbx/masks/atom_mask.h mmtbx/masks/grid_symop.h mmtbx/masks/util.h mmtbx/max_lik/ mmtbx/max_lik/max_lik.h mmtbx/max_lik/solvent_distribution_nco_09may2005.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short_uniform.h mmtbx/max_lik/solvent_distribution_nco_14mar2005.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_mod.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_short.h mmtbx/max_lik/wat_dist_r_0_1.h mmtbx/max_lik/wat_dist_r_2p0_2p5.h mmtbx/ncs/ mmtbx/ncs/cartesian_restraints.h mmtbx/ncs/tncs.h mmtbx/pair_interaction/ mmtbx/pair_interaction/interaction.h mmtbx/probe/ mmtbx/probe/Common.h mmtbx/probe/DotSpheres.h mmtbx/probe/Scoring.h mmtbx/probe/SpatialQuery.h mmtbx/reduce/ mmtbx/reduce/InteractionGraph.h mmtbx/reduce/Optimizers.h mmtbx/reduce/PositionReturn.h mmtbx/rotamer/ mmtbx/rotamer/fit.h mmtbx/rsr/ mmtbx/rsr/rsr.h mmtbx/scaling/ mmtbx/scaling/absolute_scaling.h mmtbx/scaling/outlier.h mmtbx/scaling/relative_scaling.h mmtbx/scaling/scaling.h mmtbx/scaling/twinning.h mmtbx/secondary_structure/ mmtbx/secondary_structure/dssp.hpp mmtbx/secondary_structure/identify.hpp mmtbx/tls/ mmtbx/tls/decompose.h mmtbx/tls/optimise_amplitudes.h mmtbx/tls/tls.h mmtbx/tls/utils.h mmtbx/utils/ mmtbx/utils/utils.h mmtbx/validation/ mmtbx/validation/ramachandran/ mmtbx/validation/ramachandran/rama8000_tables.h mmtbx/validation/ramachandran/rama_eval.h sent 2,050,735 bytes received 1,313 bytes 4,104,096.00 bytes/sec total size is 2,044,213 speedup is 1.00 building file list ... done omptbx/ omptbx/lock.h omptbx/omp_or_stubs.h omptbx/stubs.h sent 2,109 bytes received 76 bytes 4,370.00 bytes/sec total size is 1,850 speedup is 0.85 building file list ... done rstbx/ rstbx/backplane.h rstbx/import_scitbx_af.hpp rstbx/apps/ rstbx/apps/stills/ rstbx/apps/stills/simple_integration.h rstbx/bandpass/ rstbx/bandpass/parameters.h rstbx/bandpass/subpixel_joint_model.h rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/sensor.h rstbx/diffraction/ rstbx/diffraction/ewald_sphere.h rstbx/diffraction/partial_spot_position_partial_H.h rstbx/diffraction/reflection_range.h rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/fastbragg.h rstbx/dps_core/ rstbx/dps_core/direction.h rstbx/dps_core/directional_fft.h rstbx/dps_core/dps_core.h rstbx/dps_core/spotclass.h rstbx/indexing_api/ rstbx/indexing_api/indexing_api.h rstbx/simage/ rstbx/simage/image_simple.hpp rstbx/simulation/ rstbx/simulation/sim_xfel1.h rstbx/symmetry/ rstbx/symmetry/constraints/ rstbx/symmetry/constraints/a_g_conversion.h sent 111,358 bytes received 400 bytes 223,516.00 bytes/sec total size is 109,476 speedup is 0.98 building file list ... done scitbx/ scitbx/auto_array.h scitbx/constants.h scitbx/cubicle_neighbors.hpp scitbx/cubicles.h scitbx/error.h scitbx/error_utils.h scitbx/histogram.h scitbx/indexed_value.h scitbx/iso_surface.h scitbx/lbfgs.h scitbx/lbfgsb.h scitbx/mat2.h scitbx/mat3.h scitbx/numerical.h scitbx/r3_utils.hpp scitbx/random.h scitbx/random_legacy_boost_1_63.h scitbx/rational.h scitbx/rotr3.h scitbx/sym_mat2.h scitbx/sym_mat3.h scitbx/type_holder.h scitbx/vec2.h scitbx/vec3.h scitbx/weighted_histogram.h scitbx/array_family/ scitbx/array_family/array_adaptor.h scitbx/array_family/block_iterator.h scitbx/array_family/counts.h scitbx/array_family/error.h scitbx/array_family/flex_types.h scitbx/array_family/initialiser.h scitbx/array_family/linear_interpolation.h scitbx/array_family/loops.h scitbx/array_family/memory.h scitbx/array_family/misc_functions.h scitbx/array_family/owning_ref.h scitbx/array_family/range.h scitbx/array_family/ref.h scitbx/array_family/ref_matrix.h scitbx/array_family/ref_reductions.h scitbx/array_family/selections.h scitbx/array_family/shared.h scitbx/array_family/shared_plain.h scitbx/array_family/simple_io.h scitbx/array_family/simple_tiny_io.h scitbx/array_family/slice.h scitbx/array_family/small.h scitbx/array_family/small_plain.h scitbx/array_family/sort.h scitbx/array_family/tiny.h scitbx/array_family/tiny_mat_ref.h scitbx/array_family/tiny_plain.h scitbx/array_family/tiny_types.h scitbx/array_family/type_traits.h scitbx/array_family/versa.h scitbx/array_family/versa_matrix.h scitbx/array_family/versa_plain.h scitbx/array_family/accessors/ scitbx/array_family/accessors/c_grid.h scitbx/array_family/accessors/c_grid_padded.h scitbx/array_family/accessors/c_grid_padded_periodic.h scitbx/array_family/accessors/c_grid_periodic.h scitbx/array_family/accessors/c_index_1d_calculator.h scitbx/array_family/accessors/c_interval_grid.h scitbx/array_family/accessors/f_grid.h scitbx/array_family/accessors/flex_grid.h scitbx/array_family/accessors/mat_grid.h scitbx/array_family/accessors/packed_matrix.h scitbx/array_family/accessors/rectangular_full_packed.h scitbx/array_family/accessors/row_and_column.h scitbx/array_family/accessors/striding.h scitbx/array_family/accessors/traits.h scitbx/array_family/accessors/trivial.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/byte_str.h scitbx/array_family/boost_python/c_grid_flex_conversions.h scitbx/array_family/boost_python/flex_helpers.h scitbx/array_family/boost_python/flex_pickle_double_buffered.h scitbx/array_family/boost_python/flex_pickle_single_buffered.h scitbx/array_family/boost_python/flex_wrapper.h scitbx/array_family/boost_python/flex_wrapper_complex.h scitbx/array_family/boost_python/numpy_bridge.hpp scitbx/array_family/boost_python/owning_ref_conversions.h scitbx/array_family/boost_python/packed_to_flex_conversions.h scitbx/array_family/boost_python/passing_flex_by_reference.h scitbx/array_family/boost_python/range_wrappers.h scitbx/array_family/boost_python/ref_flex_conversions.h scitbx/array_family/boost_python/ref_from_array.h scitbx/array_family/boost_python/ref_pickle_double_buffered.h scitbx/array_family/boost_python/selections_wrapper.h scitbx/array_family/boost_python/shared_flat_conversions.h scitbx/array_family/boost_python/shared_flex_conversions.h scitbx/array_family/boost_python/shared_wrapper.h scitbx/array_family/boost_python/utils.h scitbx/array_family/detail/ scitbx/array_family/detail/auto_allocator.h scitbx/array_family/detail/generic_array_functors.h scitbx/array_family/detail/generic_array_operators.h scitbx/array_family/detail/misc.h scitbx/array_family/detail/push_back_etc.h scitbx/array_family/detail/reducing_boolean_mem_fun.h scitbx/array_family/detail/ref_helpers.h scitbx/array_family/detail/tiny_helpers.h scitbx/boost_python/ scitbx/boost_python/array_as_list.h scitbx/boost_python/container_conversions.h scitbx/boost_python/cstringio_utils.h scitbx/boost_python/is_polymorphic_workaround.h scitbx/boost_python/iterator_range.hpp scitbx/boost_python/iterator_wrappers.h scitbx/boost_python/pair_as_tuple.hpp scitbx/boost_python/sequence_as_array.h scitbx/boost_python/slice.h scitbx/boost_python/stl_map_as_dict.h scitbx/boost_python/utils.h scitbx/examples/ scitbx/examples/bevington/ scitbx/examples/bevington/prototype_core.h scitbx/fftpack/ scitbx/fftpack/complex_to_complex.h scitbx/fftpack/complex_to_complex_2d.h scitbx/fftpack/complex_to_complex_3d.h scitbx/fftpack/factorization.h scitbx/fftpack/gridding.h scitbx/fftpack/real_to_complex.h scitbx/fftpack/real_to_complex_3d.h scitbx/fftpack/detail/ scitbx/fftpack/detail/real_to_complex_backward.h scitbx/fftpack/detail/real_to_complex_forward.h scitbx/fftpack/detail/ref.h scitbx/glmtbx/ scitbx/glmtbx/family.h scitbx/glmtbx/glm.h scitbx/glmtbx/robust_glm.h scitbx/graphics_utils/ scitbx/graphics_utils/colors.h scitbx/lbfgs/ scitbx/lbfgs/drop_convergence_test.h scitbx/lbfgs/raw.h scitbx/lbfgs/raw_reference.h scitbx/lbfgsb/ scitbx/lbfgsb/fortran_interface.h scitbx/lbfgsb/raw.h scitbx/line_search/ scitbx/line_search/more_thuente_1994.h scitbx/line_search/more_thuente_1994_raw.h scitbx/lstbx/ scitbx/lstbx/normal_equations.h scitbx/math/ scitbx/math/2d_zernike_moments.h scitbx/math/accumulators.h scitbx/math/angle_derivative.h scitbx/math/approx_equal.h scitbx/math/atanh.h scitbx/math/basic_statistics.h scitbx/math/bessel.h scitbx/math/cartesian_product_fixed_size.hpp scitbx/math/chebyshev.h scitbx/math/compile_time.h scitbx/math/continued_fraction.h scitbx/math/copysign.h scitbx/math/cubic_equation.h scitbx/math/dihedral.h scitbx/math/distance_difference.h scitbx/math/distributions.h scitbx/math/eigensystem.h scitbx/math/erf.h scitbx/math/euler_angles.h scitbx/math/fast_approx_math.h scitbx/math/floating_point_epsilon.h scitbx/math/g_function.h scitbx/math/gamma.h scitbx/math/gaussian_fit_1d_analytical.h scitbx/math/gcd.h scitbx/math/golay.h scitbx/math/halton.h scitbx/math/icosahedron.h scitbx/math/imaginary.h scitbx/math/inertia_tensor.h scitbx/math/interpolation.h scitbx/math/jacks_expf.h scitbx/math/lambertw.h scitbx/math/least_squares_plane.h scitbx/math/linear_correlation.h scitbx/math/linear_interpolation.h scitbx/math/linear_regression.h scitbx/math/mean_and_variance.h scitbx/math/minimum_covering_sphere.h scitbx/math/modulo.h scitbx/math/namespace.h scitbx/math/numeric_limits.h scitbx/math/orthonormal_basis.h scitbx/math/parabolic_cylinder_d.h scitbx/math/phase_error.h scitbx/math/polygon_intersection.h scitbx/math/principal_axes_of_inertia.h scitbx/math/quadrature.h scitbx/math/r3_rotation.h scitbx/math/resample.h scitbx/math/rotate_around_axis.h scitbx/math/rotation.h scitbx/math/superpose.h scitbx/math/tetrahedron.h scitbx/math/traits.h scitbx/math/unimodular_generator.h scitbx/math/utils.h scitbx/math/weighted_covariance.h scitbx/math/zernike.h scitbx/math/zernike_moments.h scitbx/math/erf/ scitbx/math/erf/constants.h scitbx/math/erf/engine.h scitbx/math/gaussian/ scitbx/math/gaussian/fit.h scitbx/math/gaussian/namespace.h scitbx/math/gaussian/sum.h scitbx/math/gaussian/term.h scitbx/matrix/ scitbx/matrix/as_xyz.h scitbx/matrix/cholesky.h scitbx/matrix/delta_tensors.h scitbx/matrix/diagonal.h scitbx/matrix/eigensystem.h scitbx/matrix/givens.h scitbx/matrix/householder.h scitbx/matrix/inversion.h scitbx/matrix/lu_decomposition.h scitbx/matrix/matrix_vector_operations.h scitbx/matrix/move.h scitbx/matrix/multiply.h scitbx/matrix/norms.h scitbx/matrix/outer_product.h scitbx/matrix/packed.h scitbx/matrix/row_echelon.h scitbx/matrix/row_echelon_full_pivoting.h scitbx/matrix/row_echelon_full_pivoting_impl.h scitbx/matrix/row_echelon_full_pivoting_small.h scitbx/matrix/special_matrices.h scitbx/matrix/svd.h scitbx/matrix/symmetric_rank_1_update.h scitbx/matrix/tensor_rank_2.h scitbx/matrix/tensors.h scitbx/matrix/tests.h scitbx/matrix/transpose_multiply.h scitbx/matrix/triangular_systems.h scitbx/matrix/vector_operations.h scitbx/matrix/tests/ scitbx/matrix/tests/utils.h scitbx/minpack/ scitbx/minpack/levenberg_marquardt.h scitbx/minpack/raw.h scitbx/misc/ scitbx/misc/file_utils.h scitbx/misc/positive_getitem_index.h scitbx/misc/split_lines.h scitbx/random/ scitbx/random/mersenne_twister.h scitbx/random/variate_generator.h scitbx/random/boost_python/ scitbx/random/boost_python/random.h scitbx/rigid_body/ scitbx/rigid_body/array_packing.h scitbx/rigid_body/body_lib.h scitbx/rigid_body/body_t.h scitbx/rigid_body/featherstone.h scitbx/rigid_body/joint_lib.h scitbx/rigid_body/joint_t.h scitbx/rigid_body/matrix_helpers.h scitbx/rigid_body/namespace.h scitbx/rigid_body/spatial_lib.h scitbx/rigid_body/tardy.h scitbx/serialization/ scitbx/serialization/base_256.h scitbx/serialization/double_buffered.h scitbx/serialization/single_buffered.h scitbx/slatec/ scitbx/slatec/lib_c.h scitbx/slatec/lib_cpp.h scitbx/sparse/ scitbx/sparse/approx_equal.h scitbx/sparse/dfs.h scitbx/sparse/io.h scitbx/sparse/lu_factorization.h scitbx/sparse/matrix.h scitbx/sparse/operators.h scitbx/sparse/random.h scitbx/sparse/triangular.h scitbx/sparse/util.h scitbx/sparse/vector.h scitbx/sparse/boost_python/ scitbx/sparse/boost_python/vector.h scitbx/stl/ scitbx/stl/map_as_python_dict.h scitbx/stl/map_fwd.h scitbx/stl/map_wrapper.h scitbx/stl/set_wrapper.h scitbx/stl/vector_as_python_list.h scitbx/stl/vector_io.h scitbx/stl/vector_wrapper.h scitbx/suffixtree/ scitbx/suffixtree/builder.hpp scitbx/suffixtree/edge.hpp scitbx/suffixtree/exception.hpp scitbx/suffixtree/glyph.hpp scitbx/suffixtree/iterator.hpp scitbx/suffixtree/matching_statistics.hpp scitbx/suffixtree/tree.hpp scitbx/suffixtree/word.hpp scitbx/suffixtree/boost_python/ scitbx/suffixtree/boost_python/edge_exports.hpp scitbx/suffixtree/boost_python/iterator_wrapper.hpp scitbx/suffixtree/boost_python/object_extensions.hpp scitbx/suffixtree/boost_python/tree_exports.hpp scitbx/util/ scitbx/util/cpu_timer.h scitbx/wigner/ scitbx/wigner/wigner3j.h sent 1,905,271 bytes received 5,521 bytes 3,821,584.00 bytes/sec total size is 1,885,050 speedup is 0.99 building file list ... done sent 174 bytes received 12 bytes 372.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/error.h smtbx/import_cctbx.h smtbx/import_scitbx_af.h smtbx/ab_initio/ smtbx/ab_initio/density_modification.h smtbx/refinement/ smtbx/refinement/import_cctbx_xray.h smtbx/refinement/least_squares.h smtbx/refinement/weighting_schemes.h smtbx/refinement/constraints/ smtbx/refinement/constraints/affine.h smtbx/refinement/constraints/direction.h smtbx/refinement/constraints/geometrical_hydrogens.h smtbx/refinement/constraints/occupancy.h smtbx/refinement/constraints/proxy.h smtbx/refinement/constraints/reparametrisation.h smtbx/refinement/constraints/rigid.h smtbx/refinement/constraints/same_group.h smtbx/refinement/constraints/scaled_adp.h smtbx/refinement/constraints/scatterer_parameters.h smtbx/refinement/constraints/shared.h smtbx/refinement/constraints/special_position.h smtbx/refinement/constraints/symmetry_equivalent.h smtbx/refinement/constraints/u_eq_dependent_u_iso.h smtbx/refinement/constraints/u_iso_dependent_u_iso.h smtbx/refinement/restraints/ smtbx/refinement/restraints/origin_fixing.h smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/standard_xray.h smtbx/structure_factors/direct/table_based.h sent 182,171 bytes received 512 bytes 365,366.00 bytes/sec total size is 179,686 speedup is 0.98 building file list ... done spotfinder/ spotfinder/applications/ spotfinder/applications/find_active_area.h spotfinder/core_toolbox/ spotfinder/core_toolbox/distl.h spotfinder/core_toolbox/hough.h spotfinder/core_toolbox/libdistl.h spotfinder/core_toolbox/spot_shapes.h spotfinder/core_toolbox/spot_types.h spotfinder/core_toolbox/spotfilter.h spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/singlemask.h spotfinder/dxtbx_toolbox/ spotfinder/dxtbx_toolbox/distl.h spotfinder/dxtbx_toolbox/libdistl.h sent 42,956 bytes received 221 bytes 86,354.00 bytes/sec total size is 41,966 speedup is 0.97 building file list ... done tbxx/ tbxx/alignment.h tbxx/error_utils.hpp tbxx/libc_backtrace.hpp tbxx/optional_copy.hpp tbxx/pretty_type_name.hpp tbxx/time_accu.hpp sent 12,021 bytes received 133 bytes 24,308.00 bytes/sec total size is 11,532 speedup is 0.95 building file list ... done sent 151 bytes received 12 bytes 326.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/ scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,306 bytes received 534 bytes 695,680.00 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 253 bytes received 12 bytes 530.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ sent 521 bytes received 22 bytes 1,086.00 bytes/sec total size is 6,883 speedup is 12.68 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ sent 233 bytes received 22 bytes 510.00 bytes/sec total size is 1,215 speedup is 4.76 building file list ... done sent 143 bytes received 12 bytes 310.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/web.install.csh sent 3,035 bytes received 41 bytes 6,152.00 bytes/sec total size is 39,547 speedup is 12.86 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ sent 475 bytes received 22 bytes 994.00 bytes/sec total size is 31,515 speedup is 63.41 building file list ... done dxtbx/ dxtbx/command_line/ sent 853 bytes received 22 bytes 1,750.00 bytes/sec total size is 81,902 speedup is 93.60 building file list ... done fable/ fable/command_line/ sent 457 bytes received 22 bytes 958.00 bytes/sec total size is 15,542 speedup is 32.45 building file list ... done gltbx/ gltbx/command_line/ sent 175 bytes received 22 bytes 394.00 bytes/sec total size is 606 speedup is 3.08 building file list ... done iotbx/ iotbx/command_line/ sent 2,854 bytes received 22 bytes 5,752.00 bytes/sec total size is 217,626 speedup is 75.67 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/csh.sh libtbx/command_line/exec.sh libtbx/command_line/gdb.sh libtbx/command_line/latex.sh libtbx/command_line/pdflatex.sh libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/sh.sh libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh sent 7,226 bytes received 329 bytes 15,110.00 bytes/sec total size is 156,446 speedup is 20.71 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 5,701 bytes received 51 bytes 11,504.00 bytes/sec total size is 805,446 speedup is 140.03 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ sent 784 bytes received 22 bytes 1,612.00 bytes/sec total size is 11,108 speedup is 13.78 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,723 bytes received 136 bytes 23,718.00 bytes/sec total size is 9,958 speedup is 0.84 building file list ... done sent 174 bytes received 12 bytes 372.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ sent 891 bytes received 22 bytes 1,826.00 bytes/sec total size is 37,436 speedup is 41.00 building file list ... done spotfinder/ spotfinder/command_line/ sent 521 bytes received 22 bytes 1,086.00 bytes/sec total size is 22,750 speedup is 41.90 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ sent 467 bytes received 22 bytes 978.00 bytes/sec total size is 16,078 speedup is 32.88 building file list ... done sent 253 bytes received 12 bytes 530.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,639 bytes received 515 bytes 184,308.00 bytes/sec total size is 89,657 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,196 bytes received 34 bytes 2,460.00 bytes/sec total size is 967 speedup is 0.79 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 7,590 bytes received 44 bytes 15,268.00 bytes/sec total size is 9,205 speedup is 1.21 building file list ... done cctbx/adp_restraints/ cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/development/ cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/merging/ cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/maptbx/ cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_cod.csh cctbx/regression/ cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/targets/ sent 436,056 bytes received 879 bytes 291,290.00 bytes/sec total size is 2,034,432 speedup is 4.66 building file list ... done cma_es/ sent 112 bytes received 19 bytes 262.00 bytes/sec total size is 3,008 speedup is 22.96 building file list ... done crys3d/regression/ sent 365 bytes received 15 bytes 760.00 bytes/sec total size is 41,841 speedup is 110.11 building file list ... done sent 630 bytes received 12 bytes 1,284.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 12,867 bytes received 91 bytes 25,916.00 bytes/sec total size is 151,847 speedup is 11.72 building file list ... done sent 197 bytes received 12 bytes 418.00 bytes/sec total size is 8,108 speedup is 38.79 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/detectors/ iotbx/dsn6/ iotbx/examples/ iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/kriber/ iotbx/mtz/ iotbx/pdb/ iotbx/pdb/remediation/ iotbx/regression/ iotbx/regression/ncs/ iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/shelx/ iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ sent 265,131 bytes received 499 bytes 531,260.00 bytes/sec total size is 2,334,818 speedup is 8.79 building file list ... done libtbx/phil/ libtbx/queuing_system_utils/ sent 1,198 bytes received 18 bytes 2,432.00 bytes/sec total size is 243,381 speedup is 200.15 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/building/ mmtbx/building/ligands/ mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/chemical_components/ mmtbx/conformation_dependent_library/ mmtbx/density_modification/ mmtbx/disorder/ mmtbx/dynamics/ mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/torsion_restraints/ mmtbx/hydrogens/ mmtbx/ias/ mmtbx/idealized_aa_residues/ mmtbx/ions/ mmtbx/ions/svm/ mmtbx/ligands/ mmtbx/maps/ mmtbx/masks/ mmtbx/masks/tst_mask.cpp mmtbx/max_lik/ mmtbx/monomer_library/ mmtbx/nci/ mmtbx/pair_interaction/ mmtbx/polygon/ mmtbx/probe/ mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/reduce/ mmtbx/refinement/ mmtbx/refinement/real_space/ mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/rotamer/ mmtbx/rsr/ mmtbx/scaling/ mmtbx/secondary_structure/ mmtbx/secondary_structure/build/ mmtbx/utils/ mmtbx/validation/ mmtbx/validation/regression/ mmtbx/wwpdb/ sent 748,881 bytes received 854 bytes 1,499,470.00 bytes/sec total size is 6,530,029 speedup is 8.71 building file list ... done omptbx/ sent 95 bytes received 19 bytes 228.00 bytes/sec total size is 1,175 speedup is 10.31 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/cftbx/ rstbx/diffraction/ rstbx/diffraction/fastbragg/ rstbx/dps_core/ rstbx/indexing/ rstbx/simage/ rstbx/simulation/ rstbx/sublattice_support/ rstbx/viewer/ sent 1,022 bytes received 45 bytes 711.33 bytes/sec total size is 179,407 speedup is 168.14 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graphics_utils/ scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/essence/ scitbx/rigid_body/proto/ scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ sent 674,962 bytes received 1,349 bytes 1,352,622.00 bytes/sec total size is 1,108,176 speedup is 1.64 building file list ... done sent 174 bytes received 12 bytes 372.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py sent 130,446 bytes received 231 bytes 261,354.00 bytes/sec total size is 208,206 speedup is 1.59 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,473 bytes received 37 bytes 11,020.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 493 bytes received 41 bytes 1,068.00 bytes/sec total size is 323 speedup is 0.60 building file list ... done wxtbx/regression/ wxtbx/regression/tst_process_control.py sent 2,011 bytes received 34 bytes 4,090.00 bytes/sec total size is 1,770 speedup is 0.87 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cma_es/cma/ cma_es/cma/initials.par fable/fem/ fable/fem/major_types.hpp fable/test/sf_times.py fable/test/lenient/ fable/test/lenient/NOTE fable/test/lenient/calling_non_external_arg.f fable/test/lenient/str_blank_str.f fable/test/lenient/str_cont_line_str.f fable/test/semantic_error/ fable/test/semantic_error/assignment_to_parameter.f fable/test/semantic_error/calling_array.f fable/test/semantic_error/calling_dimension.f fable/test/semantic_error/common_equivalence.f fable/test/semantic_error/dimension_unknown_data_type.f fable/test/semantic_error/dims_repeated_in_common.f fable/test/semantic_error/dims_repeated_in_dimension.f fable/test/semantic_error/equivalence_external.f fable/test/semantic_error/external_array.f fable/test/semantic_error/external_common.f fable/test/semantic_error/function_data_type_decl_twice.f fable/test/semantic_error/function_name_is_also_arg.f fable/test/semantic_error/inquire_both_unit_and_file.f fable/test/semantic_error/inquire_no_unit_no_file.f fable/test/semantic_error/intrinsic_common.f fable/test/semantic_error/intrinsic_dimension.f fable/test/semantic_error/missing_include.f fable/test/semantic_error/parameter_array.f fable/test/semantic_error/parameter_in_common.f fable/test/semantic_error/parameter_in_sub_args.f fable/test/semantic_error/parameter_save.f fable/test/semantic_error/real_declared_twice.f fable/test/semantic_error/recursion_in_declaration.f fable/test/semantic_error/sub_fun_2.f fable/test/semantic_error/subroutine_name_is_also_arg.f fable/test/semantic_error/twice_in_sub_args.f fable/test/semantic_error/unknown_intrinsic.f fable/test/semantic_error/write_end.f fable/test/semantic_error/write_without_unit.f fable/test/syntax_error/ fable/test/syntax_error/bad_after_dot.f fable/test/syntax_error/bad_and.f fable/test/syntax_error/bad_complex_literal_1.f fable/test/syntax_error/bad_complex_literal_2.f fable/test/syntax_error/bad_data.f fable/test/syntax_error/bad_false.f fable/test/syntax_error/bad_format_1.f fable/test/syntax_error/bad_format_2.f fable/test/syntax_error/bad_format_3.f fable/test/syntax_error/bad_format_4.f fable/test/syntax_error/bad_format_5.f fable/test/syntax_error/bad_format_6.f fable/test/syntax_error/bad_format_7.f fable/test/syntax_error/bad_gt.f fable/test/syntax_error/bad_implied_do_1.f fable/test/syntax_error/bad_implied_do_2.f fable/test/syntax_error/bad_implied_do_3.f fable/test/syntax_error/bad_implied_do_4.f fable/test/syntax_error/bad_implied_do_5.f fable/test/syntax_error/bad_implied_do_6.f fable/test/syntax_error/bad_not.f fable/test/syntax_error/bad_not_2.f fable/test/syntax_error/bad_open_err_label.f fable/test/syntax_error/bad_or.f fable/test/syntax_error/bad_true.f fable/test/syntax_error/bare_data.f fable/test/syntax_error/bare_external.f fable/test/syntax_error/bare_integer_i.f fable/test/syntax_error/bare_print.f fable/test/syntax_error/closing_parenthesis_without_matching.f fable/test/syntax_error/common_with_data_size.f fable/test/syntax_error/data_plus_repetition.f fable/test/syntax_error/dimension_with_data_size.f fable/test/syntax_error/dot_e.f fable/test/syntax_error/duplicate_format_label.f fable/test/syntax_error/exclamation_mark_syndrome.f fable/test/syntax_error/format_without_label.f fable/test/syntax_error/fun_star.f fable/test/syntax_error/j_assign_i_percent_5.f fable/test/syntax_error/label_cont_char.f fable/test/syntax_error/label_empty.f fable/test/syntax_error/not_an_identifier.f fable/test/syntax_error/opening_parenthesis_without_matching.f fable/test/syntax_error/power_no_base.f fable/test/syntax_error/power_no_exponent.f fable/test/syntax_error/read_plus_name.f fable/test/syntax_error/read_star_comma_empty.f fable/test/syntax_error/read_star_name.f fable/test/syntax_error/save_bad_comma.f fable/test/syntax_error/save_num_comma_colon.f fable/test/syntax_error/save_num_val_colon.f fable/test/syntax_error/save_slash_slash.f fable/test/syntax_error/save_with_dims.f fable/test/syntax_error/sub_bad_comma.f fable/test/syntax_error/sub_bad_trailing.f fable/test/syntax_error/sub_no_name.f fable/test/syntax_error/sub_open_parenthesis.f fable/test/syntax_error/sub_percent_3.f fable/test/syntax_error/x_assign_1dotd.f fable/test/syntax_error/x_assign_1ex.f fable/test/syntax_error/x_assign_dot.f fable/test/syntax_error/x_assign_dot_2.f fable/test/unsupported/ fable/test/unsupported/goto_into_loop.f fable/test/unsupported/hollerith_cont_lines.f fable/test/unsupported/hollerith_with_quotes.f fable/test/unsupported/parameter_pow.f fable/test/valid/ fable/test/valid/add_dp_integer.f fable/test/valid/add_real_integer.f fable/test/valid/add_reals.f fable/test/valid/add_strings.f fable/test/valid/arr_float_2.f fable/test/valid/array_origin.f fable/test/valid/assign_to_array_elements.f fable/test/valid/blockdata_named.f fable/test/valid/blockdata_unnamed.f fable/test/valid/character_1_array_passing.f fable/test/valid/character_1_f90.f fable/test/valid/character_function.f fable/test/valid/character_function_2.f fable/test/valid/character_function_3.f fable/test/valid/combine_decl_1.f fable/test/valid/comments.f fable/test/valid/common_0.f fable/test/valid/common_1.f fable/test/valid/common_2.f fable/test/valid/common_3.f fable/test/valid/common_4.f fable/test/valid/common_equivalence_1.f fable/test/valid/common_equivalence_2.f fable/test/valid/common_equivalence_3.f fable/test/valid/common_equivalence_4.f fable/test/valid/common_equivalence_5.f fable/test/valid/common_equivalence_simple_1.f fable/test/valid/common_equivalence_simple_2.f fable/test/valid/common_equivalence_simple_3.f fable/test/valid/common_equivalence_simple_4.f fable/test/valid/common_equivalence_simple_5.f fable/test/valid/common_equivalence_simple_6.f fable/test/valid/common_name_clash.f fable/test/valid/common_name_clash_2.f fable/test/valid/common_name_clash_3.f fable/test/valid/common_save_members.f fable/test/valid/common_variants.f fable/test/valid/commonymous.f fable/test/valid/const_analysis_1.f fable/test/valid/const_analysis_2.f fable/test/valid/const_expressions.f fable/test/valid/const_expressions_2.f fable/test/valid/conv_recipe.f fable/test/valid/cycle_exit.f fable/test/valid/data_01.f fable/test/valid/data_02.f fable/test/valid/data_03.f fable/test/valid/data_04.f fable/test/valid/data_05.f fable/test/valid/data_06.f fable/test/valid/data_07.f fable/test/valid/data_08.f fable/test/valid/data_09.f fable/test/valid/data_10.f fable/test/valid/data_11.f fable/test/valid/data_12.f fable/test/valid/data_13.f fable/test/valid/data_14.f fable/test/valid/data_15.f fable/test/valid/data_16.f fable/test/valid/data_17.f fable/test/valid/data_18.f fable/test/valid/data_19.f fable/test/valid/data_20.f fable/test/valid/data_21.f fable/test/valid/data_22.f fable/test/valid/data_23.f fable/test/valid/data_24.f fable/test/valid/data_25.f fable/test/valid/data_26.f fable/test/valid/data_27.f fable/test/valid/data_28.f fable/test/valid/data_29.f fable/test/valid/data_30.f fable/test/valid/data_31.f fable/test/valid/data_32.f fable/test/valid/data_byte.f fable/test/valid/data_double_from_double_and_float.f fable/test/valid/data_str_arr.f fable/test/valid/data_type_star.f fable/test/valid/data_types.f fable/test/valid/decl_before_if.f fable/test/valid/dependency_cycle.f fable/test/valid/dim_with_parameter.f fable/test/valid/dimensions.f fable/test/valid/do_enddo.f fable/test/valid/do_ix_num.f fable/test/valid/do_label.f fable/test/valid/do_variable_passed.f fable/test/valid/do_while.f fable/test/valid/doc_data_type_star.f fable/test/valid/double_literal.f fable/test/valid/dp_example.f fable/test/valid/dynamic_parameters_1.f fable/test/valid/dynamic_parameters_2.f fable/test/valid/dynamic_parameters_3.f fable/test/valid/dynamic_parameters_4.f fable/test/valid/dynamic_parameters_5.f fable/test/valid/entry_fun_1.f fable/test/valid/entry_fun_2.f fable/test/valid/entry_sub_1.f fable/test/valid/entry_sub_2.f fable/test/valid/equivalence_01.f fable/test/valid/equivalence_02.f fable/test/valid/equivalence_03.f fable/test/valid/equivalence_04.f fable/test/valid/equivalence_05.f fable/test/valid/equivalence_06.f fable/test/valid/equivalence_07.f fable/test/valid/equivalence_08.f fable/test/valid/equivalence_09.f fable/test/valid/equivalence_10.f fable/test/valid/equivalence_11.f fable/test/valid/equivalence_12.f fable/test/valid/equivalence_data.f fable/test/valid/equivalence_mixed.f fable/test/valid/equivalence_repeated.f fable/test/valid/external_arg_function.f fable/test/valid/external_arg_layers.f fable/test/valid/external_arg_non_const.f fable/test/valid/external_arg_pass_call.f fable/test/valid/external_arg_simple.f fable/test/valid/external_arg_subroutine.f fable/test/valid/f90_ne_token.f fable/test/valid/file_names_and_expected_cout fable/test/valid/flush_external.f fable/test/valid/flush_intrinsic.f fable/test/valid/format_escape.f fable/test/valid/format_nested.f fable/test/valid/format_quote_syndrome.f fable/test/valid/format_str_blank_str.f fable/test/valid/format_used_twice.f fable/test/valid/formats.f fable/test/valid/function_calls_with_its_name_as_arg.f fable/test/valid/function_data_type_in_body.f fable/test/valid/function_no_arg.f fable/test/valid/function_no_arg_with_common_in_expression.f fable/test/valid/function_two_returns_1.f fable/test/valid/function_two_returns_2.f fable/test/valid/function_write.f fable/test/valid/goto_computed.f fable/test/valid/goto_forms.f fable/test/valid/goto_last_do.f fable/test/valid/goto_spaghetti.f fable/test/valid/goto_target_before_else.f fable/test/valid/hexadecimal.f fable/test/valid/hollerith.f fable/test/valid/identifier_prefix.f fable/test/valid/if_arithmetic.f fable/test/valid/if_cond_if_arithmetic.f fable/test/valid/if_else_endif.f fable/test/valid/if_elseif_else_endif.f fable/test/valid/if_endif.f fable/test/valid/if_spaghetti.f fable/test/valid/if_write.f fable/test/valid/implicit_integer_a.f fable/test/valid/implicit_ranges.f fable/test/valid/implied_external_arg_sub.f fable/test/valid/implied_external_arg_sub_2.f fable/test/valid/implied_program.f fable/test/valid/implied_trailing_program.f fable/test/valid/inquire.f fable/test/valid/inquire_opened.f fable/test/valid/int_literal_eq_int_literal.f fable/test/valid/integer_star_2_array.f fable/test/valid/intrinsic_with_data_type.f fable/test/valid/intrinsics_extra.f fable/test/valid/intrinsics_iargc_getarg.f fable/test/valid/intrinsics_legacy.f fable/test/valid/label_format.f fable/test/valid/len_trim.f fable/test/valid/logical_a_or_b.f fable/test/valid/logical_ops.f fable/test/valid/long_lines.f fable/test/valid/main_cmn_indirect.f fable/test/valid/mod_integers.f fable/test/valid/open_chain.f fable/test/valid/open_write_read.f fable/test/valid/open_write_read_2.f fable/test/valid/ops.f fable/test/valid/parameter_for_arg_and_cmn_dim.f fable/test/valid/parameter_n.f fable/test/valid/parameter_save.f fable/test/valid/parameter_save_common.f fable/test/valid/parameters_2.f fable/test/valid/parameters_recursive.f fable/test/valid/parameters_recursive_2.f fable/test/valid/passing_arrays.f fable/test/valid/passing_arrays_2.f fable/test/valid/passing_strings.f fable/test/valid/power.f fable/test/valid/power_2.f fable/test/valid/print.f fable/test/valid/read_end.f fable/test/valid/read_end_empty.f fable/test/valid/read_end_err.f fable/test/valid/read_end_err_star_double.f fable/test/valid/read_err.f fable/test/valid/read_fmt_double.f fable/test/valid/read_fmt_past_end_of_line.f fable/test/valid/read_fmt_real.f fable/test/valid/read_fmt_slash.f fable/test/valid/read_fmt_string.f fable/test/valid/read_fmt_x.f fable/test/valid/read_format.f fable/test/valid/read_implied_do_1.f fable/test/valid/read_iostat_end_err_1.f fable/test/valid/read_iostat_end_err_2.f fable/test/valid/read_iostat_from_file.f fable/test/valid/read_iostat_from_string.f fable/test/valid/read_lines.f fable/test/valid/read_rec_iostat.f fable/test/valid/read_star.f fable/test/valid/read_star_empty.f fable/test/valid/read_star_integer.f fable/test/valid/read_star_print_star.f fable/test/valid/read_test_1.f fable/test/valid/read_test_1_iostat.f fable/test/valid/read_test_2.f fable/test/valid/read_test_3.f fable/test/valid/read_unformatted_str_arr.f fable/test/valid/real_array_sum.f fable/test/valid/recursive_subroutine.f fable/test/valid/rewind.f fable/test/valid/save_0.f fable/test/valid/save_1.f fable/test/valid/save_2.f fable/test/valid/save_3.f fable/test/valid/save_equivalence_1.f fable/test/valid/scopes_1.f fable/test/valid/scopes_2.f fable/test/valid/scopes_3.f fable/test/valid/scopes_4.f fable/test/valid/sf.f fable/test/valid/sign.f fable/test/valid/stop_bare.f fable/test/valid/stop_integer.f fable/test/valid/stop_string.f fable/test/valid/string_array.f fable/test/valid/string_array_declarations.f fable/test/valid/string_assign_to_slice.f fable/test/valid/string_common_dims.f fable/test/valid/string_compare.f fable/test/valid/string_concat.f fable/test/valid/string_spanning_continuation_lines.f fable/test/valid/string_sub_array_passing.f fable/test/valid/strings_size_dim.f fable/test/valid/strings_size_dim_data.f fable/test/valid/sub_fun_1.f fable/test/valid/sub_fun_3.f fable/test/valid/sub_nums_size_capacity.f fable/test/valid/sub_star.f fable/test/valid/subroutine_1.f fable/test/valid/subroutine_2.f fable/test/valid/subroutine_3.f fable/test/valid/subroutine_4.f fable/test/valid/subroutine_5.f fable/test/valid/subroutine_6.f fable/test/valid/subroutine_7.f fable/test/valid/subroutine_8.f fable/test/valid/subroutine_9.f fable/test/valid/subroutine_write_iunit.f fable/test/valid/subroutine_zero.f fable/test/valid/tab_syndrome.f fable/test/valid/triple_3d.f fable/test/valid/triple_3d_common.f fable/test/valid/unformatted_experiments.f fable/test/valid/unused_arg_implicit_none.f fable/test/valid/unused_args.f fable/test/valid/using_intrinsics.f fable/test/valid/write_1.f fable/test/valid/write_err.f fable/test/valid/write_extra_parentheses.f fable/test/valid/write_fmt_double.f fable/test/valid/write_format.f fable/test/valid/write_format_with_colon.f fable/test/valid/write_implied_do_1.f fable/test/valid/write_implied_do_2.f fable/test/valid/write_implied_do_3.f fable/test/valid/write_implied_do_4.f fable/test/valid/write_implied_do_5.f fable/test/valid/write_internal_file.f fable/test/valid/write_internal_file_2.f fable/test/valid/write_internal_file_3.f fable/test/valid/write_internal_file_4.f fable/test/valid/write_pow.f fable/test/valid/write_read_end_err_implied_do.f fable/test/valid/write_read_unformatted.f fable/test/valid/write_star.f fable/test/valid/write_star_real_star_4.f fable/test/valid/write_star_real_star_8.f iotbx/bioinformatics/test/alignment.pir iotbx/bioinformatics/test/ebi_blast.xml.gz iotbx/bioinformatics/test/ncbi_blast.xml.gz iotbx/ccp4_map/ccp4_20_21_22_to_30_40_50.ccp4 iotbx/examples/pdb_truncate_to_ala/crambin_pieces.pdb iotbx/examples/pdb_truncate_to_ala/resname_mix.pdb iotbx/examples/pdb_truncate_to_ala/tutorial.txt iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py iotbx/examples/pdb_truncate_to_ala/v2_simple.py iotbx/examples/pdb_truncate_to_ala/v3_better.py iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py iotbx/regression/data/ iotbx/regression/data/1yjp.pdb iotbx/regression/data/2ERL.pdb iotbx/regression/data/D7.ccp4 iotbx/regression/data/big_cube_model.pdb iotbx/regression/data/cu3182Isup2.hkl iotbx/regression/data/cu3182sup1.cif iotbx/regression/data/insulin_unmerged_cutted_from_ccp4.mtz iotbx/regression/data/mmma.ccp4 iotbx/regression/data/mmmab.ccp4 iotbx/regression/data/mmmb.ccp4 iotbx/regression/data/non_zero_origin_map.ccp4 iotbx/regression/data/non_zero_origin_model.pdb iotbx/regression/data/non_zero_origin_model_split.pdb iotbx/regression/data/non_zero_origin_ncs_model.pdb iotbx/regression/data/non_zero_origin_ncs_spec.ncs_spec iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 4,272,186 bytes received 8,714 bytes 2,853,933.33 bytes/sec total size is 4,208,590 speedup is 0.98 make[1]: Leaving directory '/<>' dh_install -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0//usr/lib/aarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libcbf-private.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libccp4io.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libcctbx.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libomptbx.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/librstbx.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libspotfinder.so.0 debian/tmp/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0//usr/lib/aarch64-linux-gnu/ install -m0755 -d debian/libcctbx-dev//usr cp --reflink=auto -a debian/tmp/usr/include/ debian/libcctbx-dev//usr/ install -m0755 -d debian/libcctbx-dev//usr/lib/aarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libann_adaptor.so debian/tmp/usr/lib/aarch64-linux-gnu/libasymmetric_map.so debian/tmp/usr/lib/aarch64-linux-gnu/libcbf-private.so debian/tmp/usr/lib/aarch64-linux-gnu/libccp4io.so debian/tmp/usr/lib/aarch64-linux-gnu/libcctbx.so debian/tmp/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so debian/tmp/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so debian/tmp/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so debian/tmp/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so debian/tmp/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so debian/tmp/usr/lib/aarch64-linux-gnu/libomptbx.so debian/tmp/usr/lib/aarch64-linux-gnu/librstbx.so debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so debian/tmp/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so debian/tmp/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so debian/tmp/usr/lib/aarch64-linux-gnu/libspotfinder.so debian/libcctbx-dev//usr/lib/aarch64-linux-gnu/ install -m0755 -d debian/python3-cctbx//usr cp --reflink=auto -a debian/tmp/usr/bin debian/python3-cctbx//usr/ install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/cctbx debian/tmp/usr/lib/python3.12 debian/python3-cctbx//usr/lib/ dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/copyright debian/libcctbx0/usr/share/doc/libcctbx0/copyright install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/copyright debian/libcctbx-dev/usr/share/doc/libcctbx-dev/copyright install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/copyright debian/python3-cctbx/usr/share/doc/python3-cctbx/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.trimmed debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.trimmed debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.trimmed debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240401 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:166: skipping package libcctbx0 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libcctbx-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=cctbx, binary packages=['python3-cctbx'] D: dh_python3 dh_python3:204: processing package python3-cctbx... D: dh_python3 fs:50: moving files from debian/python3-cctbx/usr/lib/python3.12/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:231: invoking: /usr/bin/python3.12 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:418: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cma_es_ext.so to cma_es_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming annlib_ext.so to annlib_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_rational_ext.so to boost_rational_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_ext.so to dxtbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming fable_ext.so to fable_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming ccp4io_adaptbx_ext.so to ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming omptbx_ext.so to omptbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming std_pair_ext.so to std_pair_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming regression_test_ext.so to regression_test_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_cablam_align_utils_ext.so to mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_ext.so to rstbx_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cbflib_ext.so to cbflib_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming boost_optional_ext.so to boost_optional_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.saturation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bash): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.dynamics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_diff_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.structure_factor_timings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.afitt_fd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.density_modification): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.int_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.subgroups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_systematic_absences): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_does_not_contain_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz2map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.partial_omit_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_tls_groups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.estimate_bijvoet_ratio): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.select_best_starting_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.exec): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/labelit.png): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remote_processing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.printenv): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prepare_pdb_deposition): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fmodel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.lcm): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.csh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_tests): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.explore_metric_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_model_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.join_fragment_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mask): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_header): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fix_rama_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fmodel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.overload): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.qttbx.view_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.distance_least_squares): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.altloc_remediate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.helix_sheet_recs_as_pdb_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.detector_superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.extract_code_from_txt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.table_one): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports_crude): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.env_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_completion_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_suspicious_residues): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ss_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_all_on_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.matthews): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_dist): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_rotarama_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maximum_entropy_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clear_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.symmetry_search): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.afitt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.build_phil_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mp_geo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.poscar_as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_accumulation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_full_command_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.nonbonded_overlaps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.divide_by_zero): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.brehm_diederichs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.compute_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.evalurama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.depends_on): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xmanip): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.remove_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rank_scale_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.segment_and_split_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mon_lib_cif_triage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_untested): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdbtools): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bootstrap): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.read_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.emringer_score): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.monomer_library.comp_as_motif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.inspect_r_free_flags): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fobs_minus_fobs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.biomt_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.hbond): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.auto_sharpen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.arginine_geometry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_sizes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.analyze_static_disorder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fix_rotamer_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.simple_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.web.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.feature_enhanced_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_source_files_sorted_by_size): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_H): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.generate_error_h): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.masks): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.chunk): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.epydoc_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_variable_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.simulate_low_res_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.geometry_minimization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_ions): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_as_fasta): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage_gui): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.parallel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_not_show_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_lib_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.check_libcpp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.aev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_cctbx_bundle_for_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.get_pubmed_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_mac_app): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rigid_bond_test): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bibtex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.euclidean_model_matching): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/annlib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.valgrind): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.unpack_in_sources): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.fem_include_search_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.refresh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.prime_factors_of): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_date_and_time): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.thin_client): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chains_as_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.transfer_crystal_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_matching_images): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.probescore_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_module_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.make_install_HKLviewer_ChimeraX): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wxpython): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sisa): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_regression.test_nightly): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_r_factors_by_shell): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_pythonpath): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.add_conformations): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_commands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.mp_spotfinder_server_read_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.unicode_examples): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sort_hetatms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validation_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.get_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.git_avoid_merges): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.add_from_future_import_division): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ssm_rmsd_for_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/samosa.scale): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.hierarchy): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.distance_difference): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.extend_sidechains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.flipbase): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.lattice_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prune_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.grow_density): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.install_format): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_training): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.search_pdb_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.anneal_real_space): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.comparama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_tests_parallel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_old_style_classes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.gcd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.space_group_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_under_build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_host_and_user): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.massage_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.index): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_box): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.segmentation_fault): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.refine_anomalous_substructure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_platform_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_as_xyz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.anom_refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_contains_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.box_around_molecule): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.blast_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.insert_scale_records): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.verify_mon_lib_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.analyze_peptides): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fest): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phasertng.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.split): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.plot_anomalous_scattering): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_matching_formats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_atom_selection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reciprocal_space_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numpy_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_install_script_bat): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_cablam_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.debug_memory): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.dump_as_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.reflection_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.water_screen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.raise_exception_for_testing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_model_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.latex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.strip_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.precession_view): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cc_star): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_process): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_centers_of_mass): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numeric_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_available_slots): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.pdflatex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.probe2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.super): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_remediator): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_env): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.explore_completeness): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.print_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.patterson_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.wx_display): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_include_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_sphinx_html): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.hydrogenate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.cod_select_and_pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.eltbx.show_fp_fdp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.sdb_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.model_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fab_elbow_angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_number_of_processors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.crystal_symmetry_from_any): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_atoms_by_name): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.py_compile_all): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.gdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.tst_memory): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_residue_in_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.configure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.tcsh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_ext): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.link_as_geometry_restraints_edits): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_unzipsfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.compare_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.inexact): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.anomalous_differences_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clean_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.scons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.cdl_lookup): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.flip_symmetric_amino_acids): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.loggraph): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbf.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_in_repositories): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_miller_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.example_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_modules): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.compare_datasets): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wavelength_units): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.radial_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.create): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.get_related_ensemble): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cns_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.form_factor_query): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.dtrace): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.show_connectivity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.bfactor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.insert_write_at_start_of_each_procedure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.mtrix_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.polder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_sys_executable): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_tree): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.easy_qsub): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_ends_with): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dano_as_amplitudes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.solver): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.b_factor_stats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.isomorphous_difference_patterson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.find_active_area): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_calls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.development.ntc_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_restraints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.perigee): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_blobs): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.signal_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.benchmark_refinement): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/sphinx.build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.wait_for_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_repository_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_reserved_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.seconds_since_the_epoch): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_view_ad_hoc): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_but_no_repr): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fem): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_reticular_twin_laws): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_qstat_counts): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_exp_times): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_waters): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.xplor.map.show_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.find_distances): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.r_factor_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_as_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.any2unix): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_windows_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_binary_bundle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.getting_started): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.dlsnxs2cbf): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.sort_atoms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.split_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.multiplicity_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.help): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/samosa.join): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.display_parallax_correction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_bin_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install_conda): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.f000): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_mask_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.plot_detector_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cbf_read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.csv_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.xray_structure.show): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.water_b_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.analyse_code_comments): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_correlation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.sweep_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reindex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dtrek.to_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.apply_ncs_to_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.visualize_r_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_pickled_function): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.export_scalepack_unmerged): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.apply_tapenade_hints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_file_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.path_utility): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.split_data_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_structure_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.absolute_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.models_as_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.cout): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.quantum_interface): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_registry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.try_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.double_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_options): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.nequal): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fake_f_obs): doesn't look like a shebang: #! /bin/sh D: dh_python3 fs:335: package python3-cctbx details = {'requires.txt': {'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.egg-info/requires.txt'}, 'egg-info': {'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.egg-info/PKG-INFO', 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.17.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-cctbx D: dh_python3 pydist:173: trying to find dependency for PIL (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for h5py (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:263: dependency: included in build-deps with limits D: dh_python3 pydist:173: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for mrcfile (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for nxmx (python=None) D: dh_python3 pydist:277: invoking dpkg -S *python3/*/[Nn][Xx][Mm][Xx]-?*.*-info D: dh_python3 pydist:296: dependency: found a result with dpkg -S D: dh_python3 pydist:173: trying to find dependency for orderedset (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pint (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for procrunner (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pymol (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for requests (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for scipy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for six (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for tqdm (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for wxPython (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-pil', 'python3-mrcfile', 'python3 (<< 3.13)', 'python3-h5py (>= 3)', 'python3-matplotlib', 'python3-scipy', 'python3-six', 'python3-tqdm', 'python3-wxgtk4.0', 'python3-procrunner', 'python3-numpy', 'python3-orderedset', 'python3-requests', 'python3:any', 'python3-nxmx', 'python3-pymol', 'python3 (>= 3.12~)', 'python3-pint'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/usr/share/lintian/overrides install -p -m0644 debian/python3-cctbx.lintian-overrides debian/python3-cctbx/usr/share/lintian/overrides/python3-cctbx dh_perl -a -O--buildsystem=pybuild rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_link make[1]: Entering directory '/<>' dh_auto_build -- -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" pybuild --build -i python{version} -p 3.12 -s custom "--build-args=dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" I: pybuild base:311: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.12/include rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.12 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.12/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.12/include make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--buildsystem=pybuild Using 1713799896 as canonical time Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ebi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ncbi_blast.xml.gz using File::StripNondeterminism::handlers::gzip dh_compress -a -O--buildsystem=pybuild cd debian/libcctbx0 cd debian/libcctbx-dev cd debian/python3-cctbx chmod a-x usr/share/doc/libcctbx-dev/changelog.Debian chmod a-x usr/share/doc/libcctbx0/changelog.Debian gzip -9nf usr/share/doc/libcctbx-dev/changelog.Debian gzip -9nf usr/share/doc/libcctbx0/changelog.Debian chmod a-x usr/share/doc/python3-cctbx/changelog.Debian cd '/<>' gzip -9nf usr/share/doc/python3-cctbx/changelog.Debian cd '/<>' cd '/<>' dh_fixperms -a -O--buildsystem=pybuild find debian/libcctbx0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cctbx ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx0/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcctbx-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-cctbx/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cctbx/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cctbx/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cctbx/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/libcctbx0/usr/lib/debug/.dwz/aarch64-linux-gnu/libcctbx0.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/libcctbx0.debug -- debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 install -m0755 -d debian/python3-cctbx/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-cctbx/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-cctbx.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-cctbx.debug -- debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/libcctbx0/usr/lib/debug/.dwz/aarch64-linux-gnu/libcctbx0.debug chmod 0644 -- debian/libcctbx0/usr/lib/debug/.dwz/aarch64-linux-gnu/libcctbx0.debug objcopy --compress-debug-sections debian/python3-cctbx/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-cctbx.debug chmod 0644 -- debian/python3-cctbx/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-cctbx.debug dh_strip -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 bf884647a2b700e8f78bb7e24044b6eb0ee68ba5 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf/884647a2b700e8f78bb7e24044b6eb0ee68ba5.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf/884647a2b700e8f78bb7e24044b6eb0ee68ba5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripaamQvZ debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 /tmp/KuyFLWpxkF/stripaamQvZ cat '/tmp/KuyFLWpxkF/stripaamQvZ' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripaamQvZ debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf/884647a2b700e8f78bb7e24044b6eb0ee68ba5.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 /tmp/KuyFLWpxkF/objcopyTJA0IK chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 /tmp/KuyFLWpxkF/objcopyTJA0IK cat '/tmp/KuyFLWpxkF/objcopyTJA0IK' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyTJA0IK debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 23f0bb0de18c3f0a05d90e39f9a233da65bf69ac install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/23/f0bb0de18c3f0a05d90e39f9a233da65bf69ac.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/23/f0bb0de18c3f0a05d90e39f9a233da65bf69ac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripPbn_dj debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 /tmp/KuyFLWpxkF/stripPbn_dj cat '/tmp/KuyFLWpxkF/stripPbn_dj' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripPbn_dj debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/23/f0bb0de18c3f0a05d90e39f9a233da65bf69ac.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 /tmp/KuyFLWpxkF/objcopyu2xaJ2 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 /tmp/KuyFLWpxkF/objcopyu2xaJ2 cat '/tmp/KuyFLWpxkF/objcopyu2xaJ2' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyu2xaJ2 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 86dace2f023c1509fdc774876c39ea12c5de8f04 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86/dace2f023c1509fdc774876c39ea12c5de8f04.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86/dace2f023c1509fdc774876c39ea12c5de8f04.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripLRieMb debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 /tmp/KuyFLWpxkF/stripLRieMb cat '/tmp/KuyFLWpxkF/stripLRieMb' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripLRieMb debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86/dace2f023c1509fdc774876c39ea12c5de8f04.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 /tmp/KuyFLWpxkF/objcopyXy7twY chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 /tmp/KuyFLWpxkF/objcopyXy7twY cat '/tmp/KuyFLWpxkF/objcopyXy7twY' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyXy7twY debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 2cf5ad6df007b553f4c133c32fe41084e508c461 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c/f5ad6df007b553f4c133c32fe41084e508c461.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c/f5ad6df007b553f4c133c32fe41084e508c461.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripA1kWz2 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8fa093df4d3c5b1d61ba77b3d10f4fbcfd6824e8 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 /tmp/KuyFLWpxkF/stripA1kWz2 cat '/tmp/KuyFLWpxkF/stripA1kWz2' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1' install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8f/a093df4d3c5b1d61ba77b3d10f4fbcfd6824e8.debug chmod --reference /tmp/KuyFLWpxkF/stripA1kWz2 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c/f5ad6df007b553f4c133c32fe41084e508c461.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 /tmp/KuyFLWpxkF/objcopy6FDDM8 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 /tmp/KuyFLWpxkF/objcopy6FDDM8 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8f/a093df4d3c5b1d61ba77b3d10f4fbcfd6824e8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripbzTRbI debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so cat '/tmp/KuyFLWpxkF/objcopy6FDDM8' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1' chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripbzTRbI chmod --reference /tmp/KuyFLWpxkF/objcopy6FDDM8 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 cat '/tmp/D7ZwpOL1of/stripbzTRbI' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripbzTRbI debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8f/a093df4d3c5b1d61ba77b3d10f4fbcfd6824e8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyI4oggA chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyI4oggA debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 cat '/tmp/D7ZwpOL1of/objcopyI4oggA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyI4oggA debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1bfe2adc3088ba7eadbad1f235e2504caa6abdee f014d984ec550c9f4631bdbdb47b48b794c4a243 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b/fe2adc3088ba7eadbad1f235e2504caa6abdee.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/14d984ec550c9f4631bdbdb47b48b794c4a243.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/14d984ec550c9f4631bdbdb47b48b794c4a243.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripiOoxSE debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripiOoxSE cat '/tmp/D7ZwpOL1of/stripiOoxSE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripiOoxSE debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/14d984ec550c9f4631bdbdb47b48b794c4a243.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLKMfxg chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLKMfxg cat '/tmp/D7ZwpOL1of/objcopyLKMfxg' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyLKMfxg debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b/fe2adc3088ba7eadbad1f235e2504caa6abdee.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripzM6xKO debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 /tmp/KuyFLWpxkF/stripzM6xKO cat '/tmp/KuyFLWpxkF/stripzM6xKO' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripzM6xKO debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b/fe2adc3088ba7eadbad1f235e2504caa6abdee.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 /tmp/KuyFLWpxkF/objcopyw8jV1_ 451934b66b8e4e57465c4f1405dd1fd10fbafe13 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 /tmp/KuyFLWpxkF/objcopyw8jV1_ cat '/tmp/KuyFLWpxkF/objcopyw8jV1_' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1' install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45/1934b66b8e4e57465c4f1405dd1fd10fbafe13.debug chmod --reference /tmp/KuyFLWpxkF/objcopyw8jV1_ debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 51ce67404e327b03524f87db866c7c7c1b49b186 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/51/ce67404e327b03524f87db866c7c7c1b49b186.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/51/ce67404e327b03524f87db866c7c7c1b49b186.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripyA1rJU debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 /tmp/KuyFLWpxkF/stripyA1rJU cat '/tmp/KuyFLWpxkF/stripyA1rJU' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripyA1rJU debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/51/ce67404e327b03524f87db866c7c7c1b49b186.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 /tmp/KuyFLWpxkF/objcopyUkQyfL chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 /tmp/KuyFLWpxkF/objcopyUkQyfL cat '/tmp/KuyFLWpxkF/objcopyUkQyfL' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyUkQyfL debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 06641e0822a2881c2da6c729c99a6eae4c1d07a3 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06/641e0822a2881c2da6c729c99a6eae4c1d07a3.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06/641e0822a2881c2da6c729c99a6eae4c1d07a3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripUkLr3t debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 /tmp/KuyFLWpxkF/stripUkLr3t cat '/tmp/KuyFLWpxkF/stripUkLr3t' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripUkLr3t debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06/641e0822a2881c2da6c729c99a6eae4c1d07a3.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 /tmp/KuyFLWpxkF/objcopytK3cAm chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 /tmp/KuyFLWpxkF/objcopytK3cAm cat '/tmp/KuyFLWpxkF/objcopytK3cAm' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopytK3cAm debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 bd5b08608e5928b0ebd19a85bb38703689b0ce5b install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bd/5b08608e5928b0ebd19a85bb38703689b0ce5b.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bd/5b08608e5928b0ebd19a85bb38703689b0ce5b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/strip6TPBaM debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 /tmp/KuyFLWpxkF/strip6TPBaM cat '/tmp/KuyFLWpxkF/strip6TPBaM' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/strip6TPBaM debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bd/5b08608e5928b0ebd19a85bb38703689b0ce5b.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 /tmp/KuyFLWpxkF/objcopy3fuH7C chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 /tmp/KuyFLWpxkF/objcopy3fuH7C cat '/tmp/KuyFLWpxkF/objcopy3fuH7C' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopy3fuH7C debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 c672673dcf5b8d60ab6fdd103f00ff47739595ab install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c6 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c6/72673dcf5b8d60ab6fdd103f00ff47739595ab.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c6/72673dcf5b8d60ab6fdd103f00ff47739595ab.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripVWD2wf debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 /tmp/KuyFLWpxkF/stripVWD2wf cat '/tmp/KuyFLWpxkF/stripVWD2wf' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripVWD2wf debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c6/72673dcf5b8d60ab6fdd103f00ff47739595ab.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 /tmp/KuyFLWpxkF/objcopyeJBCZ3 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 /tmp/KuyFLWpxkF/objcopyeJBCZ3 cat '/tmp/KuyFLWpxkF/objcopyeJBCZ3' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyeJBCZ3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 cd8d418f8c4b3a7d7e3da2f4242439da01056c39 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd/8d418f8c4b3a7d7e3da2f4242439da01056c39.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd/8d418f8c4b3a7d7e3da2f4242439da01056c39.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripjcMylG debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 /tmp/KuyFLWpxkF/stripjcMylG cat '/tmp/KuyFLWpxkF/stripjcMylG' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripjcMylG debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd/8d418f8c4b3a7d7e3da2f4242439da01056c39.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 /tmp/KuyFLWpxkF/objcopyF7BGht chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 /tmp/KuyFLWpxkF/objcopyF7BGht cat '/tmp/KuyFLWpxkF/objcopyF7BGht' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyF7BGht debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 fe291feadcbebdb77b04a664b94d3bf09ef427aa install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe/291feadcbebdb77b04a664b94d3bf09ef427aa.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe/291feadcbebdb77b04a664b94d3bf09ef427aa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/striprQAmMw debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 /tmp/KuyFLWpxkF/striprQAmMw cat '/tmp/KuyFLWpxkF/striprQAmMw' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/striprQAmMw debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe/291feadcbebdb77b04a664b94d3bf09ef427aa.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 /tmp/KuyFLWpxkF/objcopySa0jam chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 /tmp/KuyFLWpxkF/objcopySa0jam cat '/tmp/KuyFLWpxkF/objcopySa0jam' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopySa0jam debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45/1934b66b8e4e57465c4f1405dd1fd10fbafe13.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripc4YEGX debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 9955d44238b39af25aec890f6ee5bbe39ae354ee install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99/55d44238b39af25aec890f6ee5bbe39ae354ee.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99/55d44238b39af25aec890f6ee5bbe39ae354ee.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripInoPzp debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 /tmp/KuyFLWpxkF/stripInoPzp cat '/tmp/KuyFLWpxkF/stripInoPzp' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripInoPzp debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99/55d44238b39af25aec890f6ee5bbe39ae354ee.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 /tmp/KuyFLWpxkF/objcopyY5t6s5 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 /tmp/KuyFLWpxkF/objcopyY5t6s5 cat '/tmp/KuyFLWpxkF/objcopyY5t6s5' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyY5t6s5 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripc4YEGX debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 cat '/tmp/D7ZwpOL1of/stripc4YEGX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so' debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 bb259d5fd06c3317c848e9e7af9e3a3ffeb5402a install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bb objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bb/259d5fd06c3317c848e9e7af9e3a3ffeb5402a.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bb/259d5fd06c3317c848e9e7af9e3a3ffeb5402a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripjErmRZ debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 /tmp/KuyFLWpxkF/stripjErmRZ cat '/tmp/KuyFLWpxkF/stripjErmRZ' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1' chmod --reference /tmp/D7ZwpOL1of/stripc4YEGX debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45/1934b66b8e4e57465c4f1405dd1fd10fbafe13.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrd1BZC chmod --reference /tmp/KuyFLWpxkF/stripjErmRZ debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bb/259d5fd06c3317c848e9e7af9e3a3ffeb5402a.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 /tmp/KuyFLWpxkF/objcopyLdbeTR chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 /tmp/KuyFLWpxkF/objcopyLdbeTR cat '/tmp/KuyFLWpxkF/objcopyLdbeTR' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyLdbeTR debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrd1BZC cat '/tmp/D7ZwpOL1of/objcopyrd1BZC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so' f954eacf051907f91194d9e73be6992fafe86a7d chmod --reference /tmp/D7ZwpOL1of/objcopyrd1BZC debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9/54eacf051907f91194d9e73be6992fafe86a7d.debug debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 eac217bfb0818adc02f32fe6e60c85a1393328b4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/c217bfb0818adc02f32fe6e60c85a1393328b4.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9/54eacf051907f91194d9e73be6992fafe86a7d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/strip0IyFPx debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 /tmp/KuyFLWpxkF/strip0IyFPx cat '/tmp/KuyFLWpxkF/strip0IyFPx' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/strip0IyFPx debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9/54eacf051907f91194d9e73be6992fafe86a7d.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 /tmp/KuyFLWpxkF/objcopyUSwySg chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 /tmp/KuyFLWpxkF/objcopyUSwySg cat '/tmp/KuyFLWpxkF/objcopyUSwySg' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyUSwySg debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8c10fb1ee2cae2544ed94ffc5e53d8bb28dd6de1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/c217bfb0818adc02f32fe6e60c85a1393328b4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripBb6R_Q debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8c/10fb1ee2cae2544ed94ffc5e53d8bb28dd6de1.debug chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripBb6R_Q cat '/tmp/D7ZwpOL1of/stripBb6R_Q' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripBb6R_Q debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/c217bfb0818adc02f32fe6e60c85a1393328b4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy4RqFXq chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy4RqFXq cat '/tmp/D7ZwpOL1of/objcopy4RqFXq' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy4RqFXq debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 93f9b8c6f8090907e307e59b5d23592532e57320 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/f9b8c6f8090907e307e59b5d23592532e57320.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8c/10fb1ee2cae2544ed94ffc5e53d8bb28dd6de1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripm2fhRq debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 /tmp/KuyFLWpxkF/stripm2fhRq cat '/tmp/KuyFLWpxkF/stripm2fhRq' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripm2fhRq debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8c/10fb1ee2cae2544ed94ffc5e53d8bb28dd6de1.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 /tmp/KuyFLWpxkF/objcopyVlqutE chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 /tmp/KuyFLWpxkF/objcopyVlqutE cat '/tmp/KuyFLWpxkF/objcopyVlqutE' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyVlqutE debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 1646facccfd6c627014b4d3ce14545e61127b0c7 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/16 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/16/46facccfd6c627014b4d3ce14545e61127b0c7.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/16/46facccfd6c627014b4d3ce14545e61127b0c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripCSEfNo debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 /tmp/KuyFLWpxkF/stripCSEfNo cat '/tmp/KuyFLWpxkF/stripCSEfNo' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripCSEfNo debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/16/46facccfd6c627014b4d3ce14545e61127b0c7.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 /tmp/KuyFLWpxkF/objcopyrD3Hi9 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 /tmp/KuyFLWpxkF/objcopyrD3Hi9 cat '/tmp/KuyFLWpxkF/objcopyrD3Hi9' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyrD3Hi9 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/f9b8c6f8090907e307e59b5d23592532e57320.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striptY8J0v debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 67fd14920f09897c00964c6fa84d3e2e8957943e install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67/fd14920f09897c00964c6fa84d3e2e8957943e.debug chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striptY8J0v cat '/tmp/D7ZwpOL1of/striptY8J0v' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so' chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67/fd14920f09897c00964c6fa84d3e2e8957943e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripL6ljhB debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 chmod --reference /tmp/D7ZwpOL1of/striptY8J0v debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 /tmp/KuyFLWpxkF/stripL6ljhB objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/f9b8c6f8090907e307e59b5d23592532e57320.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBIXu2o cat '/tmp/KuyFLWpxkF/stripL6ljhB' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripL6ljhB debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67/fd14920f09897c00964c6fa84d3e2e8957943e.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 /tmp/KuyFLWpxkF/objcopyenELdi chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBIXu2o chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 /tmp/KuyFLWpxkF/objcopyenELdi cat '/tmp/D7ZwpOL1of/objcopyBIXu2o' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so' cat '/tmp/KuyFLWpxkF/objcopyenELdi' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyenELdi debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 chmod --reference /tmp/D7ZwpOL1of/objcopyBIXu2o debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 ee88d5811c547484c1aae06f78295b5b812d0dd0 debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8cc078271285bf125f945e98f181a81441cd7024 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ee objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ee/88d5811c547484c1aae06f78295b5b812d0dd0.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/c078271285bf125f945e98f181a81441cd7024.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/c078271285bf125f945e98f181a81441cd7024.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripQbkkQP debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripQbkkQP cat '/tmp/D7ZwpOL1of/stripQbkkQP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripQbkkQP debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ee/88d5811c547484c1aae06f78295b5b812d0dd0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/strip0RvTho debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/c078271285bf125f945e98f181a81441cd7024.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyfFWjvW chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyfFWjvW chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 /tmp/KuyFLWpxkF/strip0RvTho cat '/tmp/D7ZwpOL1of/objcopyfFWjvW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so' cat '/tmp/KuyFLWpxkF/strip0RvTho' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/strip0RvTho debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 chmod --reference /tmp/D7ZwpOL1of/objcopyfFWjvW debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ee/88d5811c547484c1aae06f78295b5b812d0dd0.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 /tmp/KuyFLWpxkF/objcopyGEjHXN chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 /tmp/KuyFLWpxkF/objcopyGEjHXN cat '/tmp/KuyFLWpxkF/objcopyGEjHXN' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1' debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 chmod --reference /tmp/KuyFLWpxkF/objcopyGEjHXN debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 ab9a1e536890419f5926af18c366c7defe5d2131 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 64766aa80fa92e85c72456df3f3693eb60857648 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/9a1e536890419f5926af18c366c7defe5d2131.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/64 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/64/766aa80fa92e85c72456df3f3693eb60857648.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/64/766aa80fa92e85c72456df3f3693eb60857648.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/KuyFLWpxkF/stripscvxbc debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 /tmp/KuyFLWpxkF/stripscvxbc cat '/tmp/KuyFLWpxkF/stripscvxbc' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/stripscvxbc debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/64/766aa80fa92e85c72456df3f3693eb60857648.debug debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 /tmp/KuyFLWpxkF/objcopyik92nq chmod --reference debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 /tmp/KuyFLWpxkF/objcopyik92nq cat '/tmp/KuyFLWpxkF/objcopyik92nq' > 'debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1' chmod --reference /tmp/KuyFLWpxkF/objcopyik92nq debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libcctbx0/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libcctbx0/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libcctbx0/usr/lib/debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/9a1e536890419f5926af18c366c7defe5d2131.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripam5Glp debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc ln -s libcctbx0 debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc/libcctbx0-dbgsym install -m0755 -d debian/.debhelper/libcctbx0 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripam5Glp cat '/tmp/D7ZwpOL1of/stripam5Glp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripam5Glp debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/9a1e536890419f5926af18c366c7defe5d2131.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRKvc78 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRKvc78 cat '/tmp/D7ZwpOL1of/objcopyRKvc78' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyRKvc78 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 d6d7263a4b95200e6ad873937bc220843b6cc2c3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/d7263a4b95200e6ad873937bc220843b6cc2c3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/d7263a4b95200e6ad873937bc220843b6cc2c3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip7prMMc debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip7prMMc cat '/tmp/D7ZwpOL1of/strip7prMMc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip7prMMc debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/d7263a4b95200e6ad873937bc220843b6cc2c3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzaIUHP chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzaIUHP cat '/tmp/D7ZwpOL1of/objcopyzaIUHP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyzaIUHP debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1e606136c8564d73b6ad9c237bfaf81b958e9b7a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/606136c8564d73b6ad9c237bfaf81b958e9b7a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/606136c8564d73b6ad9c237bfaf81b958e9b7a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripig_sXf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripig_sXf cat '/tmp/D7ZwpOL1of/stripig_sXf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripig_sXf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/606136c8564d73b6ad9c237bfaf81b958e9b7a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyGsADa7 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyGsADa7 cat '/tmp/D7ZwpOL1of/objcopyGsADa7' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyGsADa7 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ebbfe5756063a8441ecaea27f39864535117d73e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/bfe5756063a8441ecaea27f39864535117d73e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/bfe5756063a8441ecaea27f39864535117d73e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripTytTyC debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripTytTyC cat '/tmp/D7ZwpOL1of/stripTytTyC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripTytTyC debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/bfe5756063a8441ecaea27f39864535117d73e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRHFoRC chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRHFoRC cat '/tmp/D7ZwpOL1of/objcopyRHFoRC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyRHFoRC debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 8b64b952fd15dae9bb7a5702a7f9b1a8fb2713de install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8b/64b952fd15dae9bb7a5702a7f9b1a8fb2713de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8b/64b952fd15dae9bb7a5702a7f9b1a8fb2713de.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripVGZQ_G debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripVGZQ_G cat '/tmp/D7ZwpOL1of/stripVGZQ_G' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripVGZQ_G debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8b/64b952fd15dae9bb7a5702a7f9b1a8fb2713de.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyvncv31 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyvncv31 cat '/tmp/D7ZwpOL1of/objcopyvncv31' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyvncv31 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e492950e8e583c69dd2b96fa68267b73b3cbc5fb install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/92950e8e583c69dd2b96fa68267b73b3cbc5fb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/92950e8e583c69dd2b96fa68267b73b3cbc5fb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripMFFtA1 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripMFFtA1 cat '/tmp/D7ZwpOL1of/stripMFFtA1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripMFFtA1 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/92950e8e583c69dd2b96fa68267b73b3cbc5fb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyb8ddAX chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyb8ddAX cat '/tmp/D7ZwpOL1of/objcopyb8ddAX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyb8ddAX debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9a89f646a90212fa7fa40b6d1f524dc852a1f08e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/89f646a90212fa7fa40b6d1f524dc852a1f08e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/89f646a90212fa7fa40b6d1f524dc852a1f08e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip0ieui0 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip0ieui0 cat '/tmp/D7ZwpOL1of/strip0ieui0' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip0ieui0 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/89f646a90212fa7fa40b6d1f524dc852a1f08e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyxJOoWw chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyxJOoWw cat '/tmp/D7ZwpOL1of/objcopyxJOoWw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyxJOoWw debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1ff13cf7b4f9b6befd6b7fdc65d2d6a4134a32df install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/f13cf7b4f9b6befd6b7fdc65d2d6a4134a32df.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/f13cf7b4f9b6befd6b7fdc65d2d6a4134a32df.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripbXD13b debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripbXD13b cat '/tmp/D7ZwpOL1of/stripbXD13b' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripbXD13b debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/f13cf7b4f9b6befd6b7fdc65d2d6a4134a32df.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyb8nf6K chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyb8nf6K cat '/tmp/D7ZwpOL1of/objcopyb8nf6K' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyb8nf6K debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f8ef0aac1ea22509cd7dbafcb899b539e00fe36e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/ef0aac1ea22509cd7dbafcb899b539e00fe36e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/ef0aac1ea22509cd7dbafcb899b539e00fe36e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripnmdQ0x debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripnmdQ0x cat '/tmp/D7ZwpOL1of/stripnmdQ0x' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripnmdQ0x debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/ef0aac1ea22509cd7dbafcb899b539e00fe36e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyUD9GQ7 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyUD9GQ7 cat '/tmp/D7ZwpOL1of/objcopyUD9GQ7' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyUD9GQ7 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6ff5c4536f2f03ae7a80df959d727597c368d816 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/f5c4536f2f03ae7a80df959d727597c368d816.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/f5c4536f2f03ae7a80df959d727597c368d816.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripDBYNjO debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripDBYNjO cat '/tmp/D7ZwpOL1of/stripDBYNjO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripDBYNjO debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/f5c4536f2f03ae7a80df959d727597c368d816.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJee1mL chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJee1mL cat '/tmp/D7ZwpOL1of/objcopyJee1mL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyJee1mL debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 2f900cab99d4f447c8922dbe67a54092c67b5489 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/900cab99d4f447c8922dbe67a54092c67b5489.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/900cab99d4f447c8922dbe67a54092c67b5489.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripobuC3n debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripobuC3n cat '/tmp/D7ZwpOL1of/stripobuC3n' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripobuC3n debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/900cab99d4f447c8922dbe67a54092c67b5489.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyb3rcMU chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyb3rcMU cat '/tmp/D7ZwpOL1of/objcopyb3rcMU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyb3rcMU debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 80713518e1030e40d569be0c7cd6b0d0b91b8383 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/713518e1030e40d569be0c7cd6b0d0b91b8383.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/713518e1030e40d569be0c7cd6b0d0b91b8383.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripwUR07b debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripwUR07b cat '/tmp/D7ZwpOL1of/stripwUR07b' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripwUR07b debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/713518e1030e40d569be0c7cd6b0d0b91b8383.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyQeDode chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyQeDode cat '/tmp/D7ZwpOL1of/objcopyQeDode' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyQeDode debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b7e0505767cebd7eb9f1ea72b2c10d2f4af8669b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/e0505767cebd7eb9f1ea72b2c10d2f4af8669b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/e0505767cebd7eb9f1ea72b2c10d2f4af8669b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripKXxo8b debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripKXxo8b cat '/tmp/D7ZwpOL1of/stripKXxo8b' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripKXxo8b debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/e0505767cebd7eb9f1ea72b2c10d2f4af8669b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0yG_VD chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0yG_VD cat '/tmp/D7ZwpOL1of/objcopy0yG_VD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy0yG_VD debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 4900601bdb27b6a0ff90897be43ee4b85e1d3532 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/00601bdb27b6a0ff90897be43ee4b85e1d3532.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/00601bdb27b6a0ff90897be43ee4b85e1d3532.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip55ED2I debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip55ED2I cat '/tmp/D7ZwpOL1of/strip55ED2I' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip55ED2I debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/00601bdb27b6a0ff90897be43ee4b85e1d3532.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6H89jH chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6H89jH cat '/tmp/D7ZwpOL1of/objcopy6H89jH' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy6H89jH debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0f50e787a6f9ecc08c6f4d81721dd384472b9b32 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/50e787a6f9ecc08c6f4d81721dd384472b9b32.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/50e787a6f9ecc08c6f4d81721dd384472b9b32.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripl5UT9q debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripl5UT9q cat '/tmp/D7ZwpOL1of/stripl5UT9q' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripl5UT9q debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/50e787a6f9ecc08c6f4d81721dd384472b9b32.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyPDSJqx chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyPDSJqx cat '/tmp/D7ZwpOL1of/objcopyPDSJqx' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyPDSJqx debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b6c4f22ef8f33daaf5375c5793c07f4825d90486 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/c4f22ef8f33daaf5375c5793c07f4825d90486.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/c4f22ef8f33daaf5375c5793c07f4825d90486.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripS6NYL3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripS6NYL3 cat '/tmp/D7ZwpOL1of/stripS6NYL3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripS6NYL3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/c4f22ef8f33daaf5375c5793c07f4825d90486.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrmMVCi chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrmMVCi cat '/tmp/D7ZwpOL1of/objcopyrmMVCi' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyrmMVCi debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4ab73d0e307183f67975c16dcc7467118fde7b99 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/b73d0e307183f67975c16dcc7467118fde7b99.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/b73d0e307183f67975c16dcc7467118fde7b99.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripFyhWAv debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripFyhWAv cat '/tmp/D7ZwpOL1of/stripFyhWAv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripFyhWAv debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/b73d0e307183f67975c16dcc7467118fde7b99.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyUnFLpP chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyUnFLpP cat '/tmp/D7ZwpOL1of/objcopyUnFLpP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyUnFLpP debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 3c0d5b99f1b02eea7d1eacd23ba1016d7f87978f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/0d5b99f1b02eea7d1eacd23ba1016d7f87978f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/0d5b99f1b02eea7d1eacd23ba1016d7f87978f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip5n6jih debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip5n6jih cat '/tmp/D7ZwpOL1of/strip5n6jih' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip5n6jih debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/0d5b99f1b02eea7d1eacd23ba1016d7f87978f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyA5gOVZ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyA5gOVZ cat '/tmp/D7ZwpOL1of/objcopyA5gOVZ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyA5gOVZ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 afbd1d760c31eb6a691194892d57f65e31a44afe install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/bd1d760c31eb6a691194892d57f65e31a44afe.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/bd1d760c31eb6a691194892d57f65e31a44afe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripeoqDIo debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripeoqDIo cat '/tmp/D7ZwpOL1of/stripeoqDIo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripeoqDIo debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/bd1d760c31eb6a691194892d57f65e31a44afe.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0EUs8l chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0EUs8l cat '/tmp/D7ZwpOL1of/objcopy0EUs8l' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy0EUs8l debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 47c6cf2d1256766984267b8392d330558ff7da8b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/c6cf2d1256766984267b8392d330558ff7da8b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/c6cf2d1256766984267b8392d330558ff7da8b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripgdolT7 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripgdolT7 cat '/tmp/D7ZwpOL1of/stripgdolT7' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripgdolT7 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/c6cf2d1256766984267b8392d330558ff7da8b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybuXRWt chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybuXRWt cat '/tmp/D7ZwpOL1of/objcopybuXRWt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopybuXRWt debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5dfea032bd67a1147ae9faad15d245e285e71b07 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/fea032bd67a1147ae9faad15d245e285e71b07.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/fea032bd67a1147ae9faad15d245e285e71b07.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripWuUb4a debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripWuUb4a cat '/tmp/D7ZwpOL1of/stripWuUb4a' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripWuUb4a debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/fea032bd67a1147ae9faad15d245e285e71b07.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyZXlM_r chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyZXlM_r cat '/tmp/D7ZwpOL1of/objcopyZXlM_r' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyZXlM_r debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 eb0e7837819754e4ff6d5f9f1b9d3813bf6193fc install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/0e7837819754e4ff6d5f9f1b9d3813bf6193fc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/0e7837819754e4ff6d5f9f1b9d3813bf6193fc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripnp1Pkc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripnp1Pkc cat '/tmp/D7ZwpOL1of/stripnp1Pkc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripnp1Pkc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/0e7837819754e4ff6d5f9f1b9d3813bf6193fc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyYT0OlH chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyYT0OlH cat '/tmp/D7ZwpOL1of/objcopyYT0OlH' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyYT0OlH debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 863dc940c2664df6e5f89bf72ebb38ba0b815fde install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/3dc940c2664df6e5f89bf72ebb38ba0b815fde.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/3dc940c2664df6e5f89bf72ebb38ba0b815fde.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripAjewfs debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripAjewfs cat '/tmp/D7ZwpOL1of/stripAjewfs' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripAjewfs debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/3dc940c2664df6e5f89bf72ebb38ba0b815fde.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKN8dot chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKN8dot cat '/tmp/D7ZwpOL1of/objcopyKN8dot' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyKN8dot debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 729455d3fb5716fae4e7e7915e03d52073037c53 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/9455d3fb5716fae4e7e7915e03d52073037c53.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/9455d3fb5716fae4e7e7915e03d52073037c53.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripq_nbfT debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripq_nbfT cat '/tmp/D7ZwpOL1of/stripq_nbfT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripq_nbfT debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/9455d3fb5716fae4e7e7915e03d52073037c53.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjohFgc chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjohFgc cat '/tmp/D7ZwpOL1of/objcopyjohFgc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyjohFgc debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 56225d61147c1702128d6e715bbd6e115d48a160 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/225d61147c1702128d6e715bbd6e115d48a160.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/225d61147c1702128d6e715bbd6e115d48a160.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripQV84Vw debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripQV84Vw cat '/tmp/D7ZwpOL1of/stripQV84Vw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripQV84Vw debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/225d61147c1702128d6e715bbd6e115d48a160.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopylT7iOi chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopylT7iOi cat '/tmp/D7ZwpOL1of/objcopylT7iOi' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopylT7iOi debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 b5e748e72d728a2f455d768fdc0da6da09508c62 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/e748e72d728a2f455d768fdc0da6da09508c62.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/e748e72d728a2f455d768fdc0da6da09508c62.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripO7gf_c debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripO7gf_c cat '/tmp/D7ZwpOL1of/stripO7gf_c' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripO7gf_c debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/e748e72d728a2f455d768fdc0da6da09508c62.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyicUL_O chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyicUL_O cat '/tmp/D7ZwpOL1of/objcopyicUL_O' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyicUL_O debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8205f883786699a5c36621d6cc9117b65ca21e15 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/05f883786699a5c36621d6cc9117b65ca21e15.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/05f883786699a5c36621d6cc9117b65ca21e15.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripTe4kRR debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripTe4kRR cat '/tmp/D7ZwpOL1of/stripTe4kRR' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripTe4kRR debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/05f883786699a5c36621d6cc9117b65ca21e15.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybu1L9m chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybu1L9m cat '/tmp/D7ZwpOL1of/objcopybu1L9m' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopybu1L9m debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1a9d708936d0d7a7c21e69c006a6007aa25ab24b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/9d708936d0d7a7c21e69c006a6007aa25ab24b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/9d708936d0d7a7c21e69c006a6007aa25ab24b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripeqRy1_ debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripeqRy1_ cat '/tmp/D7ZwpOL1of/stripeqRy1_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripeqRy1_ debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/9d708936d0d7a7c21e69c006a6007aa25ab24b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0qC5PD chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0qC5PD cat '/tmp/D7ZwpOL1of/objcopy0qC5PD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy0qC5PD debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5a491b43099a3e62e5468c9209ba24a9fcadc54e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/491b43099a3e62e5468c9209ba24a9fcadc54e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/491b43099a3e62e5468c9209ba24a9fcadc54e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripirFhHa debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripirFhHa cat '/tmp/D7ZwpOL1of/stripirFhHa' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripirFhHa debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/491b43099a3e62e5468c9209ba24a9fcadc54e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy5DD2YQ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy5DD2YQ cat '/tmp/D7ZwpOL1of/objcopy5DD2YQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy5DD2YQ debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2c9ee6a9a8c54292e385046ab4d08e70533f1b82 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/9ee6a9a8c54292e385046ab4d08e70533f1b82.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/9ee6a9a8c54292e385046ab4d08e70533f1b82.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripPYAZzO debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripPYAZzO cat '/tmp/D7ZwpOL1of/stripPYAZzO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripPYAZzO debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/9ee6a9a8c54292e385046ab4d08e70533f1b82.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy3dQWgw chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy3dQWgw cat '/tmp/D7ZwpOL1of/objcopy3dQWgw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy3dQWgw debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 321db17a0aaab72a040f09d6fde92cbbb65e004a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/1db17a0aaab72a040f09d6fde92cbbb65e004a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/1db17a0aaab72a040f09d6fde92cbbb65e004a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripm_g9iF debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripm_g9iF cat '/tmp/D7ZwpOL1of/stripm_g9iF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripm_g9iF debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/1db17a0aaab72a040f09d6fde92cbbb65e004a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypW4Fdz chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypW4Fdz cat '/tmp/D7ZwpOL1of/objcopypW4Fdz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopypW4Fdz debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 abfef944df694a5a22582b0cd026b96f8d56d5b2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/fef944df694a5a22582b0cd026b96f8d56d5b2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/fef944df694a5a22582b0cd026b96f8d56d5b2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripC1UFqY debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripC1UFqY cat '/tmp/D7ZwpOL1of/stripC1UFqY' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripC1UFqY debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/fef944df694a5a22582b0cd026b96f8d56d5b2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyg7UoKp chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyg7UoKp cat '/tmp/D7ZwpOL1of/objcopyg7UoKp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyg7UoKp debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2053f9de8d53188d5546456de5994a4832c087b2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/53f9de8d53188d5546456de5994a4832c087b2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/53f9de8d53188d5546456de5994a4832c087b2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip1flFeE debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip1flFeE cat '/tmp/D7ZwpOL1of/strip1flFeE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip1flFeE debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/53f9de8d53188d5546456de5994a4832c087b2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLg4uGs chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLg4uGs cat '/tmp/D7ZwpOL1of/objcopyLg4uGs' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyLg4uGs debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 66d5a7946dd6c8ee0057139bd5205e68f4367a20 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/d5a7946dd6c8ee0057139bd5205e68f4367a20.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/d5a7946dd6c8ee0057139bd5205e68f4367a20.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripuUuVnz debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripuUuVnz cat '/tmp/D7ZwpOL1of/stripuUuVnz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripuUuVnz debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/d5a7946dd6c8ee0057139bd5205e68f4367a20.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopynbH9nI chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopynbH9nI cat '/tmp/D7ZwpOL1of/objcopynbH9nI' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopynbH9nI debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b46625bb6e139c99dac6b670e278c2829e60ab44 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4/6625bb6e139c99dac6b670e278c2829e60ab44.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4/6625bb6e139c99dac6b670e278c2829e60ab44.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripL8LdS7 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripL8LdS7 cat '/tmp/D7ZwpOL1of/stripL8LdS7' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripL8LdS7 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4/6625bb6e139c99dac6b670e278c2829e60ab44.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyh6fTrZ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyh6fTrZ cat '/tmp/D7ZwpOL1of/objcopyh6fTrZ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyh6fTrZ debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 66ab90b5043e264cf24f6133e67b0c5b9dd10354 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ab90b5043e264cf24f6133e67b0c5b9dd10354.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ab90b5043e264cf24f6133e67b0c5b9dd10354.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripdf7eO1 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripdf7eO1 cat '/tmp/D7ZwpOL1of/stripdf7eO1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripdf7eO1 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ab90b5043e264cf24f6133e67b0c5b9dd10354.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy1lEe9u chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy1lEe9u cat '/tmp/D7ZwpOL1of/objcopy1lEe9u' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy1lEe9u debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 cb084076792dec35bcd4f4d7ef724fcd04079c68 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/084076792dec35bcd4f4d7ef724fcd04079c68.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/084076792dec35bcd4f4d7ef724fcd04079c68.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripg7p3FT debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripg7p3FT cat '/tmp/D7ZwpOL1of/stripg7p3FT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripg7p3FT debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/084076792dec35bcd4f4d7ef724fcd04079c68.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyDYG_sW chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyDYG_sW cat '/tmp/D7ZwpOL1of/objcopyDYG_sW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyDYG_sW debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 23498eeade39773a65798c096347e63ff0482ede install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/498eeade39773a65798c096347e63ff0482ede.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/498eeade39773a65798c096347e63ff0482ede.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripbjqU4M debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripbjqU4M cat '/tmp/D7ZwpOL1of/stripbjqU4M' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripbjqU4M debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/498eeade39773a65798c096347e63ff0482ede.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy2dlbyz chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy2dlbyz cat '/tmp/D7ZwpOL1of/objcopy2dlbyz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy2dlbyz debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 280237b8fc32cb84a4e5c546bedd6ad596fe9faa install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/0237b8fc32cb84a4e5c546bedd6ad596fe9faa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/0237b8fc32cb84a4e5c546bedd6ad596fe9faa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripjSSNHQ debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripjSSNHQ cat '/tmp/D7ZwpOL1of/stripjSSNHQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripjSSNHQ debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/0237b8fc32cb84a4e5c546bedd6ad596fe9faa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjus26t chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjus26t cat '/tmp/D7ZwpOL1of/objcopyjus26t' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyjus26t debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 3a45c855c8bfdaf5958d53b861294ab4fe86c438 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/45c855c8bfdaf5958d53b861294ab4fe86c438.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/45c855c8bfdaf5958d53b861294ab4fe86c438.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripWU4m26 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripWU4m26 cat '/tmp/D7ZwpOL1of/stripWU4m26' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripWU4m26 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/45c855c8bfdaf5958d53b861294ab4fe86c438.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyMfvMxu chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyMfvMxu cat '/tmp/D7ZwpOL1of/objcopyMfvMxu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyMfvMxu debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1f420c5886ae7872502850cc3255ae55af0144d7 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/420c5886ae7872502850cc3255ae55af0144d7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/420c5886ae7872502850cc3255ae55af0144d7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripBBOBJN debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripBBOBJN cat '/tmp/D7ZwpOL1of/stripBBOBJN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripBBOBJN debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/420c5886ae7872502850cc3255ae55af0144d7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypcGggB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypcGggB cat '/tmp/D7ZwpOL1of/objcopypcGggB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopypcGggB debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f78fdae0e27c8c2e7cb7a0713d3a69dea8fb4ad1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/8fdae0e27c8c2e7cb7a0713d3a69dea8fb4ad1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/8fdae0e27c8c2e7cb7a0713d3a69dea8fb4ad1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripOoUlrF debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripOoUlrF cat '/tmp/D7ZwpOL1of/stripOoUlrF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripOoUlrF debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/8fdae0e27c8c2e7cb7a0713d3a69dea8fb4ad1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopySFeNLe chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopySFeNLe cat '/tmp/D7ZwpOL1of/objcopySFeNLe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopySFeNLe debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a34ac21fa7bbe5dcf94ddc2c62b79ad516bb60fd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/4ac21fa7bbe5dcf94ddc2c62b79ad516bb60fd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/4ac21fa7bbe5dcf94ddc2c62b79ad516bb60fd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripn_W6pG debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripn_W6pG cat '/tmp/D7ZwpOL1of/stripn_W6pG' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripn_W6pG debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/4ac21fa7bbe5dcf94ddc2c62b79ad516bb60fd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyf7DYBL chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyf7DYBL cat '/tmp/D7ZwpOL1of/objcopyf7DYBL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyf7DYBL debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 bbf85aaa188dc27254125fdea5fb153d6a344096 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/f85aaa188dc27254125fdea5fb153d6a344096.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/f85aaa188dc27254125fdea5fb153d6a344096.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripH8pnwK debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripH8pnwK cat '/tmp/D7ZwpOL1of/stripH8pnwK' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripH8pnwK debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/f85aaa188dc27254125fdea5fb153d6a344096.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyfAnw4k chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyfAnw4k cat '/tmp/D7ZwpOL1of/objcopyfAnw4k' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyfAnw4k debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9d09a857c321d7d4f5222fffeeda294b86d7346d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/09a857c321d7d4f5222fffeeda294b86d7346d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/09a857c321d7d4f5222fffeeda294b86d7346d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripmpxs2E debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripmpxs2E cat '/tmp/D7ZwpOL1of/stripmpxs2E' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripmpxs2E debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/09a857c321d7d4f5222fffeeda294b86d7346d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJQFGyI chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJQFGyI cat '/tmp/D7ZwpOL1of/objcopyJQFGyI' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyJQFGyI debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 91dff6bdcb2a39108d5778f9f0e49727bc7e0fcd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/dff6bdcb2a39108d5778f9f0e49727bc7e0fcd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/dff6bdcb2a39108d5778f9f0e49727bc7e0fcd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripKoJiOW debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripKoJiOW cat '/tmp/D7ZwpOL1of/stripKoJiOW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripKoJiOW debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/dff6bdcb2a39108d5778f9f0e49727bc7e0fcd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyEzQtl_ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyEzQtl_ cat '/tmp/D7ZwpOL1of/objcopyEzQtl_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyEzQtl_ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 513fbeb557f4578fb98eb1f9cb590b6ad183e559 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/3fbeb557f4578fb98eb1f9cb590b6ad183e559.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/3fbeb557f4578fb98eb1f9cb590b6ad183e559.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip2CrxeU debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip2CrxeU cat '/tmp/D7ZwpOL1of/strip2CrxeU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip2CrxeU debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/3fbeb557f4578fb98eb1f9cb590b6ad183e559.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopywvXAd3 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopywvXAd3 cat '/tmp/D7ZwpOL1of/objcopywvXAd3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopywvXAd3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 c3bd17dbbfd186005c079f00a083eb285b974cd1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/bd17dbbfd186005c079f00a083eb285b974cd1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/bd17dbbfd186005c079f00a083eb285b974cd1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip53Rjk_ debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip53Rjk_ cat '/tmp/D7ZwpOL1of/strip53Rjk_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip53Rjk_ debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/bd17dbbfd186005c079f00a083eb285b974cd1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzZdvC2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzZdvC2 cat '/tmp/D7ZwpOL1of/objcopyzZdvC2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyzZdvC2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 848934b0b4974cdeae1971f34619fd610418733a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/8934b0b4974cdeae1971f34619fd610418733a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/8934b0b4974cdeae1971f34619fd610418733a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripwhnRLc debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripwhnRLc cat '/tmp/D7ZwpOL1of/stripwhnRLc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripwhnRLc debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/8934b0b4974cdeae1971f34619fd610418733a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy7IZryX chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy7IZryX cat '/tmp/D7ZwpOL1of/objcopy7IZryX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy7IZryX debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f11537bf404a264e13bdda203625ca32acb05296 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/1537bf404a264e13bdda203625ca32acb05296.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/1537bf404a264e13bdda203625ca32acb05296.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striphSdR_i debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striphSdR_i cat '/tmp/D7ZwpOL1of/striphSdR_i' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/striphSdR_i debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/1537bf404a264e13bdda203625ca32acb05296.debug debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6zZyCo chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6zZyCo cat '/tmp/D7ZwpOL1of/objcopy6zZyCo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy6zZyCo debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 dd1065810847c7c6fed98965562dca0dfebb0e06 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dd/1065810847c7c6fed98965562dca0dfebb0e06.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dd/1065810847c7c6fed98965562dca0dfebb0e06.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripPTi0MD debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripPTi0MD cat '/tmp/D7ZwpOL1of/stripPTi0MD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripPTi0MD debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dd/1065810847c7c6fed98965562dca0dfebb0e06.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyUiWJ8j chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyUiWJ8j cat '/tmp/D7ZwpOL1of/objcopyUiWJ8j' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyUiWJ8j debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 83d69136c569fe82f80013300b58055d9efa30d4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/d69136c569fe82f80013300b58055d9efa30d4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/d69136c569fe82f80013300b58055d9efa30d4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striplzGtnJ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striplzGtnJ cat '/tmp/D7ZwpOL1of/striplzGtnJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/striplzGtnJ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/d69136c569fe82f80013300b58055d9efa30d4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzfpXja chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzfpXja cat '/tmp/D7ZwpOL1of/objcopyzfpXja' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyzfpXja debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 85882f141cb353f1c21503cc9eb346df9942ab7c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/882f141cb353f1c21503cc9eb346df9942ab7c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/882f141cb353f1c21503cc9eb346df9942ab7c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripxcs_ha debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripxcs_ha cat '/tmp/D7ZwpOL1of/stripxcs_ha' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripxcs_ha debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/882f141cb353f1c21503cc9eb346df9942ab7c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyHniMrT chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyHniMrT cat '/tmp/D7ZwpOL1of/objcopyHniMrT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyHniMrT debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 72de343016febbd4c73afdde236d711f72bbd153 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/de343016febbd4c73afdde236d711f72bbd153.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/de343016febbd4c73afdde236d711f72bbd153.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip_vvTr5 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip_vvTr5 cat '/tmp/D7ZwpOL1of/strip_vvTr5' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip_vvTr5 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/de343016febbd4c73afdde236d711f72bbd153.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopya0l8Q8 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopya0l8Q8 cat '/tmp/D7ZwpOL1of/objcopya0l8Q8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopya0l8Q8 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 7756f5b8d7f610970d94d863d058bc900c5da887 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/56f5b8d7f610970d94d863d058bc900c5da887.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/56f5b8d7f610970d94d863d058bc900c5da887.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripJUNZ_o debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripJUNZ_o cat '/tmp/D7ZwpOL1of/stripJUNZ_o' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripJUNZ_o debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/56f5b8d7f610970d94d863d058bc900c5da887.debug debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBD7ZZ4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBD7ZZ4 cat '/tmp/D7ZwpOL1of/objcopyBD7ZZ4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyBD7ZZ4 debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 33341782a8b0bc054617f63a6a618dc103cce0aa install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/341782a8b0bc054617f63a6a618dc103cce0aa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/341782a8b0bc054617f63a6a618dc103cce0aa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip3OkSsl debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip3OkSsl cat '/tmp/D7ZwpOL1of/strip3OkSsl' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip3OkSsl debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/341782a8b0bc054617f63a6a618dc103cce0aa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjEpFIL chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjEpFIL cat '/tmp/D7ZwpOL1of/objcopyjEpFIL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyjEpFIL debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6d39ef2516b9964658ce10694aef4783c55a7e08 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/39ef2516b9964658ce10694aef4783c55a7e08.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/39ef2516b9964658ce10694aef4783c55a7e08.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripjjLpL0 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripjjLpL0 cat '/tmp/D7ZwpOL1of/stripjjLpL0' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripjjLpL0 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/39ef2516b9964658ce10694aef4783c55a7e08.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyX0YmVU chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyX0YmVU cat '/tmp/D7ZwpOL1of/objcopyX0YmVU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyX0YmVU debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 c61d06aa863ad2fc6b5908b227a962fd1534cc3f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/1d06aa863ad2fc6b5908b227a962fd1534cc3f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/1d06aa863ad2fc6b5908b227a962fd1534cc3f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip13L_sf debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip13L_sf cat '/tmp/D7ZwpOL1of/strip13L_sf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip13L_sf debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/1d06aa863ad2fc6b5908b227a962fd1534cc3f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy1wMEV2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy1wMEV2 cat '/tmp/D7ZwpOL1of/objcopy1wMEV2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy1wMEV2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 11541fc3857d3f8a5fa19c734bb2a533c9ecd404 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/541fc3857d3f8a5fa19c734bb2a533c9ecd404.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/541fc3857d3f8a5fa19c734bb2a533c9ecd404.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripoPxZqx debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripoPxZqx cat '/tmp/D7ZwpOL1of/stripoPxZqx' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripoPxZqx debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/541fc3857d3f8a5fa19c734bb2a533c9ecd404.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykJ6SbT chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykJ6SbT cat '/tmp/D7ZwpOL1of/objcopykJ6SbT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopykJ6SbT debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 242b039068e08d79e1df15bdfea5f407533db5d5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/2b039068e08d79e1df15bdfea5f407533db5d5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/2b039068e08d79e1df15bdfea5f407533db5d5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripvxzhgD debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripvxzhgD cat '/tmp/D7ZwpOL1of/stripvxzhgD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripvxzhgD debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/2b039068e08d79e1df15bdfea5f407533db5d5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyDccMHw chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyDccMHw cat '/tmp/D7ZwpOL1of/objcopyDccMHw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyDccMHw debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 609a4fc04fcbde9f124a1475718e720ba0bc8c06 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/9a4fc04fcbde9f124a1475718e720ba0bc8c06.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/9a4fc04fcbde9f124a1475718e720ba0bc8c06.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripB32uKw debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripB32uKw cat '/tmp/D7ZwpOL1of/stripB32uKw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripB32uKw debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/9a4fc04fcbde9f124a1475718e720ba0bc8c06.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykNsPI3 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykNsPI3 cat '/tmp/D7ZwpOL1of/objcopykNsPI3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopykNsPI3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e3bdaf95d53f104d07f51015bf096a3badba0442 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/bdaf95d53f104d07f51015bf096a3badba0442.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/bdaf95d53f104d07f51015bf096a3badba0442.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripg7hFr6 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripg7hFr6 cat '/tmp/D7ZwpOL1of/stripg7hFr6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripg7hFr6 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/bdaf95d53f104d07f51015bf096a3badba0442.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyY11jKp chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyY11jKp cat '/tmp/D7ZwpOL1of/objcopyY11jKp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyY11jKp debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1eb1fda7f5341e8e8747898ed534cff7ae78400c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/b1fda7f5341e8e8747898ed534cff7ae78400c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/b1fda7f5341e8e8747898ed534cff7ae78400c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripsykiSY debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripsykiSY cat '/tmp/D7ZwpOL1of/stripsykiSY' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripsykiSY debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/b1fda7f5341e8e8747898ed534cff7ae78400c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyuJ95F7 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyuJ95F7 cat '/tmp/D7ZwpOL1of/objcopyuJ95F7' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyuJ95F7 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 3e9dd9b59f885ce2fae58e7ece651f1a6361147d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/9dd9b59f885ce2fae58e7ece651f1a6361147d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/9dd9b59f885ce2fae58e7ece651f1a6361147d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripzzjQ9X debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripzzjQ9X cat '/tmp/D7ZwpOL1of/stripzzjQ9X' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripzzjQ9X debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/9dd9b59f885ce2fae58e7ece651f1a6361147d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyTh_4lH chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyTh_4lH cat '/tmp/D7ZwpOL1of/objcopyTh_4lH' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyTh_4lH debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 6da54eaaca7c7bb51acad7e0e92f98801e672a40 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/a54eaaca7c7bb51acad7e0e92f98801e672a40.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/a54eaaca7c7bb51acad7e0e92f98801e672a40.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripTzeY1k debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripTzeY1k cat '/tmp/D7ZwpOL1of/stripTzeY1k' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripTzeY1k debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/a54eaaca7c7bb51acad7e0e92f98801e672a40.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrtDEc_ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrtDEc_ cat '/tmp/D7ZwpOL1of/objcopyrtDEc_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyrtDEc_ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d6d80664ae8b44cd31915f9fe89b3e408eb9c667 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/d80664ae8b44cd31915f9fe89b3e408eb9c667.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/d80664ae8b44cd31915f9fe89b3e408eb9c667.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripQXGMYx debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripQXGMYx cat '/tmp/D7ZwpOL1of/stripQXGMYx' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripQXGMYx debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/d80664ae8b44cd31915f9fe89b3e408eb9c667.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXAHMRl chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXAHMRl cat '/tmp/D7ZwpOL1of/objcopyXAHMRl' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyXAHMRl debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5d5f6b354f1b98a44599420ef8ef16b434cfd3a4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/5f6b354f1b98a44599420ef8ef16b434cfd3a4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/5f6b354f1b98a44599420ef8ef16b434cfd3a4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripXBjygf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripXBjygf cat '/tmp/D7ZwpOL1of/stripXBjygf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripXBjygf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/5f6b354f1b98a44599420ef8ef16b434cfd3a4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_XOsnC chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_XOsnC cat '/tmp/D7ZwpOL1of/objcopy_XOsnC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy_XOsnC debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 15a50e01c89900a1c6689cf7bf8bdd0e5ba3411e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/a50e01c89900a1c6689cf7bf8bdd0e5ba3411e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/a50e01c89900a1c6689cf7bf8bdd0e5ba3411e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip_mzWmc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip_mzWmc cat '/tmp/D7ZwpOL1of/strip_mzWmc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip_mzWmc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/a50e01c89900a1c6689cf7bf8bdd0e5ba3411e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy3kojkG chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy3kojkG cat '/tmp/D7ZwpOL1of/objcopy3kojkG' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy3kojkG debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 609c43e69f9c5950a80253ace249a02d9da003a1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/9c43e69f9c5950a80253ace249a02d9da003a1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/9c43e69f9c5950a80253ace249a02d9da003a1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripZvTkBP debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripZvTkBP cat '/tmp/D7ZwpOL1of/stripZvTkBP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripZvTkBP debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/9c43e69f9c5950a80253ace249a02d9da003a1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopymaTvab chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopymaTvab cat '/tmp/D7ZwpOL1of/objcopymaTvab' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopymaTvab debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 98685702074165ebe6638f24b2e5cf9eb92ff837 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/685702074165ebe6638f24b2e5cf9eb92ff837.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/685702074165ebe6638f24b2e5cf9eb92ff837.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striphhAEFJ debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striphhAEFJ cat '/tmp/D7ZwpOL1of/striphhAEFJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/striphhAEFJ debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/685702074165ebe6638f24b2e5cf9eb92ff837.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyo_Sxdy chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyo_Sxdy cat '/tmp/D7ZwpOL1of/objcopyo_Sxdy' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyo_Sxdy debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6e03c62c1ce9d635a35df3c6eb38ac17dc90a0f3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/03c62c1ce9d635a35df3c6eb38ac17dc90a0f3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/03c62c1ce9d635a35df3c6eb38ac17dc90a0f3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripDrHpiS debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripDrHpiS cat '/tmp/D7ZwpOL1of/stripDrHpiS' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripDrHpiS debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/03c62c1ce9d635a35df3c6eb38ac17dc90a0f3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopySaQ2TO chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopySaQ2TO cat '/tmp/D7ZwpOL1of/objcopySaQ2TO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopySaQ2TO debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 52bf858228f5fd70401e555013ba6602c7f91a27 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/bf858228f5fd70401e555013ba6602c7f91a27.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/bf858228f5fd70401e555013ba6602c7f91a27.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip1rPtIp debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip1rPtIp cat '/tmp/D7ZwpOL1of/strip1rPtIp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip1rPtIp debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/bf858228f5fd70401e555013ba6602c7f91a27.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyR7sb_E chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyR7sb_E cat '/tmp/D7ZwpOL1of/objcopyR7sb_E' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyR7sb_E debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 3d28635fd624fb44269cd0bd5bd8c3d090ec1afc install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/28635fd624fb44269cd0bd5bd8c3d090ec1afc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/28635fd624fb44269cd0bd5bd8c3d090ec1afc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripo3iav8 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripo3iav8 cat '/tmp/D7ZwpOL1of/stripo3iav8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripo3iav8 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/28635fd624fb44269cd0bd5bd8c3d090ec1afc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXFuxHF chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXFuxHF cat '/tmp/D7ZwpOL1of/objcopyXFuxHF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyXFuxHF debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 793bc59115a02b252503e7893742dc74dca4c64c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/3bc59115a02b252503e7893742dc74dca4c64c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/3bc59115a02b252503e7893742dc74dca4c64c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripdBLM0M debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripdBLM0M cat '/tmp/D7ZwpOL1of/stripdBLM0M' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripdBLM0M debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/3bc59115a02b252503e7893742dc74dca4c64c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopytQCpFo chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopytQCpFo cat '/tmp/D7ZwpOL1of/objcopytQCpFo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopytQCpFo debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5e9007be1fc4123d883dad9dfd0a20896954dc54 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/9007be1fc4123d883dad9dfd0a20896954dc54.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/9007be1fc4123d883dad9dfd0a20896954dc54.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripHJ7JTD debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripHJ7JTD cat '/tmp/D7ZwpOL1of/stripHJ7JTD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripHJ7JTD debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/9007be1fc4123d883dad9dfd0a20896954dc54.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopySrv4Qe chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopySrv4Qe cat '/tmp/D7ZwpOL1of/objcopySrv4Qe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopySrv4Qe debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 0ac287ae49836ad0a8bd237edc6d1c8b58a954be install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/c287ae49836ad0a8bd237edc6d1c8b58a954be.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/c287ae49836ad0a8bd237edc6d1c8b58a954be.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripgVEiKl debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripgVEiKl cat '/tmp/D7ZwpOL1of/stripgVEiKl' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripgVEiKl debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/c287ae49836ad0a8bd237edc6d1c8b58a954be.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybfPxke chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybfPxke cat '/tmp/D7ZwpOL1of/objcopybfPxke' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopybfPxke debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 c04708e05029af56bf54b902becf098dc108247d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/4708e05029af56bf54b902becf098dc108247d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/4708e05029af56bf54b902becf098dc108247d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripmvmGPA debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripmvmGPA cat '/tmp/D7ZwpOL1of/stripmvmGPA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripmvmGPA debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/4708e05029af56bf54b902becf098dc108247d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyhPTpMT chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyhPTpMT cat '/tmp/D7ZwpOL1of/objcopyhPTpMT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyhPTpMT debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5420944454ee1d6f79ed8f25ba765bc8121349cd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/20944454ee1d6f79ed8f25ba765bc8121349cd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/20944454ee1d6f79ed8f25ba765bc8121349cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripZ309xX debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripZ309xX cat '/tmp/D7ZwpOL1of/stripZ309xX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripZ309xX debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/20944454ee1d6f79ed8f25ba765bc8121349cd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_7SrHG chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_7SrHG cat '/tmp/D7ZwpOL1of/objcopy_7SrHG' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy_7SrHG debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 40ad4141e36ee0ea9bddc93eb1cff26e5660cf61 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/ad4141e36ee0ea9bddc93eb1cff26e5660cf61.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/ad4141e36ee0ea9bddc93eb1cff26e5660cf61.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripyxQY_U debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripyxQY_U cat '/tmp/D7ZwpOL1of/stripyxQY_U' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripyxQY_U debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/ad4141e36ee0ea9bddc93eb1cff26e5660cf61.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRsWqje chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRsWqje cat '/tmp/D7ZwpOL1of/objcopyRsWqje' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyRsWqje debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 89452bdbf4aa4884c39f9a9409e2c94fd3e74adf install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/452bdbf4aa4884c39f9a9409e2c94fd3e74adf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/452bdbf4aa4884c39f9a9409e2c94fd3e74adf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip0cHSxw debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip0cHSxw cat '/tmp/D7ZwpOL1of/strip0cHSxw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip0cHSxw debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/452bdbf4aa4884c39f9a9409e2c94fd3e74adf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRUQSnT chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyRUQSnT cat '/tmp/D7ZwpOL1of/objcopyRUQSnT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyRUQSnT debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 058dcc821507bd46a23219e83151eca00a0ab2b7 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/8dcc821507bd46a23219e83151eca00a0ab2b7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/8dcc821507bd46a23219e83151eca00a0ab2b7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripNRFOyi debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripNRFOyi cat '/tmp/D7ZwpOL1of/stripNRFOyi' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripNRFOyi debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/8dcc821507bd46a23219e83151eca00a0ab2b7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzogOtg chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzogOtg cat '/tmp/D7ZwpOL1of/objcopyzogOtg' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyzogOtg debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 17c7a8273aaddcdd19fb085592ee098260d8c610 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/c7a8273aaddcdd19fb085592ee098260d8c610.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/c7a8273aaddcdd19fb085592ee098260d8c610.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripkhHYGN debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripkhHYGN cat '/tmp/D7ZwpOL1of/stripkhHYGN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripkhHYGN debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/c7a8273aaddcdd19fb085592ee098260d8c610.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyIJsEFl chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyIJsEFl cat '/tmp/D7ZwpOL1of/objcopyIJsEFl' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyIJsEFl debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5b5c83c85ca56a86ba0d7aeef066404c6a19be28 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/5c83c85ca56a86ba0d7aeef066404c6a19be28.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/5c83c85ca56a86ba0d7aeef066404c6a19be28.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip5PUbbI debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip5PUbbI cat '/tmp/D7ZwpOL1of/strip5PUbbI' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip5PUbbI debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/5c83c85ca56a86ba0d7aeef066404c6a19be28.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyxgs3q1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyxgs3q1 cat '/tmp/D7ZwpOL1of/objcopyxgs3q1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyxgs3q1 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 44aacbff68e5ea6991ed895487deb75a7e30f3ca install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/aacbff68e5ea6991ed895487deb75a7e30f3ca.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/aacbff68e5ea6991ed895487deb75a7e30f3ca.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripYIQZLw debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripYIQZLw cat '/tmp/D7ZwpOL1of/stripYIQZLw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripYIQZLw debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/aacbff68e5ea6991ed895487deb75a7e30f3ca.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXJEaL2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXJEaL2 cat '/tmp/D7ZwpOL1of/objcopyXJEaL2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyXJEaL2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d5dac38c3de23dd4972c7796210185ecb4cef462 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5/dac38c3de23dd4972c7796210185ecb4cef462.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5/dac38c3de23dd4972c7796210185ecb4cef462.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip9HRbir debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip9HRbir cat '/tmp/D7ZwpOL1of/strip9HRbir' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip9HRbir debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5/dac38c3de23dd4972c7796210185ecb4cef462.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXUAbuF chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyXUAbuF cat '/tmp/D7ZwpOL1of/objcopyXUAbuF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyXUAbuF debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ab1970f7207ff019f6537b578284388228b4c0dd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/1970f7207ff019f6537b578284388228b4c0dd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/1970f7207ff019f6537b578284388228b4c0dd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripKdnEN_ debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripKdnEN_ cat '/tmp/D7ZwpOL1of/stripKdnEN_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripKdnEN_ debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/1970f7207ff019f6537b578284388228b4c0dd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykUnT0W chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykUnT0W cat '/tmp/D7ZwpOL1of/objcopykUnT0W' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopykUnT0W debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6b6497b53adc715559bd0861da15642b68fe9e89 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/6497b53adc715559bd0861da15642b68fe9e89.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/6497b53adc715559bd0861da15642b68fe9e89.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip9fzgnk debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip9fzgnk cat '/tmp/D7ZwpOL1of/strip9fzgnk' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip9fzgnk debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/6497b53adc715559bd0861da15642b68fe9e89.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyVMSldc chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyVMSldc cat '/tmp/D7ZwpOL1of/objcopyVMSldc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyVMSldc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 b3310704403069245ba82955d2d8b5be73e0de1c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/310704403069245ba82955d2d8b5be73e0de1c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/310704403069245ba82955d2d8b5be73e0de1c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripPkZv0n debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripPkZv0n cat '/tmp/D7ZwpOL1of/stripPkZv0n' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripPkZv0n debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/310704403069245ba82955d2d8b5be73e0de1c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopymOenQE chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopymOenQE cat '/tmp/D7ZwpOL1of/objcopymOenQE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopymOenQE debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 58d78c687f99dc665664c45c438203de02e356d6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/d78c687f99dc665664c45c438203de02e356d6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/d78c687f99dc665664c45c438203de02e356d6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripq7OlPG debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripq7OlPG cat '/tmp/D7ZwpOL1of/stripq7OlPG' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripq7OlPG debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/d78c687f99dc665664c45c438203de02e356d6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy8e2PtR chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy8e2PtR cat '/tmp/D7ZwpOL1of/objcopy8e2PtR' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy8e2PtR debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1809dc50097e63493cdcf45ef324a7b06f0bc111 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/09dc50097e63493cdcf45ef324a7b06f0bc111.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/09dc50097e63493cdcf45ef324a7b06f0bc111.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripbIeMbs debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripbIeMbs cat '/tmp/D7ZwpOL1of/stripbIeMbs' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripbIeMbs debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/09dc50097e63493cdcf45ef324a7b06f0bc111.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyy5E_XL chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyy5E_XL cat '/tmp/D7ZwpOL1of/objcopyy5E_XL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyy5E_XL debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a0178fad1140806066b84e3e7f48c29e26d4dc56 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/178fad1140806066b84e3e7f48c29e26d4dc56.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/178fad1140806066b84e3e7f48c29e26d4dc56.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripo284jV debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripo284jV cat '/tmp/D7ZwpOL1of/stripo284jV' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripo284jV debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/178fad1140806066b84e3e7f48c29e26d4dc56.debug debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyNNzaop chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyNNzaop cat '/tmp/D7ZwpOL1of/objcopyNNzaop' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyNNzaop debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6fd7384a9ed4277a272512077c7ba468495b6151 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/d7384a9ed4277a272512077c7ba468495b6151.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/d7384a9ed4277a272512077c7ba468495b6151.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip_diXst debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip_diXst cat '/tmp/D7ZwpOL1of/strip_diXst' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip_diXst debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/d7384a9ed4277a272512077c7ba468495b6151.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyyEIBKi chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyyEIBKi cat '/tmp/D7ZwpOL1of/objcopyyEIBKi' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyyEIBKi debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 93ea4eac3a2df446e906146aa6f6dfd44676037b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/ea4eac3a2df446e906146aa6f6dfd44676037b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/ea4eac3a2df446e906146aa6f6dfd44676037b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripFhywqF debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripFhywqF cat '/tmp/D7ZwpOL1of/stripFhywqF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripFhywqF debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/ea4eac3a2df446e906146aa6f6dfd44676037b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyZJFfEF chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyZJFfEF cat '/tmp/D7ZwpOL1of/objcopyZJFfEF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyZJFfEF debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9502e8084a761f8c758ecf2f4a6e11d06ecbd28f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/02e8084a761f8c758ecf2f4a6e11d06ecbd28f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/02e8084a761f8c758ecf2f4a6e11d06ecbd28f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripxSfdYH debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripxSfdYH cat '/tmp/D7ZwpOL1of/stripxSfdYH' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripxSfdYH debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/02e8084a761f8c758ecf2f4a6e11d06ecbd28f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyfApcbV chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyfApcbV cat '/tmp/D7ZwpOL1of/objcopyfApcbV' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyfApcbV debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 818648d7aa7b8bf8a7b76f1cf9b33e6eef89eae5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/8648d7aa7b8bf8a7b76f1cf9b33e6eef89eae5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/8648d7aa7b8bf8a7b76f1cf9b33e6eef89eae5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripn3QGLB debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripn3QGLB cat '/tmp/D7ZwpOL1of/stripn3QGLB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripn3QGLB debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/8648d7aa7b8bf8a7b76f1cf9b33e6eef89eae5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy1FMiIe chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy1FMiIe cat '/tmp/D7ZwpOL1of/objcopy1FMiIe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy1FMiIe debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 8e266b1b36133bb1aedbb68442c554ba2158d5d5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/266b1b36133bb1aedbb68442c554ba2158d5d5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/266b1b36133bb1aedbb68442c554ba2158d5d5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripAnB2kZ debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripAnB2kZ cat '/tmp/D7ZwpOL1of/stripAnB2kZ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripAnB2kZ debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/266b1b36133bb1aedbb68442c554ba2158d5d5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyo4Hm1y chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyo4Hm1y cat '/tmp/D7ZwpOL1of/objcopyo4Hm1y' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyo4Hm1y debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9c6726231c15a74e9275719d51db0eac529f305a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/6726231c15a74e9275719d51db0eac529f305a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/6726231c15a74e9275719d51db0eac529f305a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripdBZFPk debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripdBZFPk cat '/tmp/D7ZwpOL1of/stripdBZFPk' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripdBZFPk debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/6726231c15a74e9275719d51db0eac529f305a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopynD8zI2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopynD8zI2 cat '/tmp/D7ZwpOL1of/objcopynD8zI2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopynD8zI2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a96f5d98bfd778ee3cd6acb3466ba1a650383439 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/6f5d98bfd778ee3cd6acb3466ba1a650383439.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/6f5d98bfd778ee3cd6acb3466ba1a650383439.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripu6iPX6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripu6iPX6 cat '/tmp/D7ZwpOL1of/stripu6iPX6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripu6iPX6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/6f5d98bfd778ee3cd6acb3466ba1a650383439.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJ3JKo6 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJ3JKo6 cat '/tmp/D7ZwpOL1of/objcopyJ3JKo6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyJ3JKo6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5ab2a69ccb691e71ccb796492ae74f55de3dcbb8 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/b2a69ccb691e71ccb796492ae74f55de3dcbb8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/b2a69ccb691e71ccb796492ae74f55de3dcbb8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripgzGLH_ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripgzGLH_ cat '/tmp/D7ZwpOL1of/stripgzGLH_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripgzGLH_ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/b2a69ccb691e71ccb796492ae74f55de3dcbb8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyTqeoBm chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyTqeoBm cat '/tmp/D7ZwpOL1of/objcopyTqeoBm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyTqeoBm debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 264c3da08feda53b81e5abd1e87f6a2a7e1d6998 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/4c3da08feda53b81e5abd1e87f6a2a7e1d6998.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/4c3da08feda53b81e5abd1e87f6a2a7e1d6998.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripP2hta6 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripP2hta6 cat '/tmp/D7ZwpOL1of/stripP2hta6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripP2hta6 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/4c3da08feda53b81e5abd1e87f6a2a7e1d6998.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyNxhfKh chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyNxhfKh cat '/tmp/D7ZwpOL1of/objcopyNxhfKh' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyNxhfKh debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f59023f99a0de47fbd6c5dd76a97a862e0adb650 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/9023f99a0de47fbd6c5dd76a97a862e0adb650.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/9023f99a0de47fbd6c5dd76a97a862e0adb650.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip15M8y5 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip15M8y5 cat '/tmp/D7ZwpOL1of/strip15M8y5' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip15M8y5 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/9023f99a0de47fbd6c5dd76a97a862e0adb650.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyWPA1kQ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyWPA1kQ cat '/tmp/D7ZwpOL1of/objcopyWPA1kQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyWPA1kQ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 272a49e0766a92ef6a074d9bfd00e6d49f249c5d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/2a49e0766a92ef6a074d9bfd00e6d49f249c5d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/2a49e0766a92ef6a074d9bfd00e6d49f249c5d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripNh7g_8 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripNh7g_8 cat '/tmp/D7ZwpOL1of/stripNh7g_8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripNh7g_8 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/2a49e0766a92ef6a074d9bfd00e6d49f249c5d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyf97v_t chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyf97v_t cat '/tmp/D7ZwpOL1of/objcopyf97v_t' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyf97v_t debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 059d010f6f7f0ef00e7694248789ae0eb5de3db5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/9d010f6f7f0ef00e7694248789ae0eb5de3db5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/9d010f6f7f0ef00e7694248789ae0eb5de3db5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripCszLOm debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripCszLOm cat '/tmp/D7ZwpOL1of/stripCszLOm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripCszLOm debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/9d010f6f7f0ef00e7694248789ae0eb5de3db5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLQBMzF chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLQBMzF cat '/tmp/D7ZwpOL1of/objcopyLQBMzF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyLQBMzF debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 bdb01bbdf19684f16c592a97f2bc27bb49c6d4e2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/b01bbdf19684f16c592a97f2bc27bb49c6d4e2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/b01bbdf19684f16c592a97f2bc27bb49c6d4e2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip9ApVhv debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip9ApVhv cat '/tmp/D7ZwpOL1of/strip9ApVhv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip9ApVhv debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/b01bbdf19684f16c592a97f2bc27bb49c6d4e2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJL1TG2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJL1TG2 cat '/tmp/D7ZwpOL1of/objcopyJL1TG2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyJL1TG2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ec17a3c19d1889353321ef20d90fa8de25cb558e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/17a3c19d1889353321ef20d90fa8de25cb558e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/17a3c19d1889353321ef20d90fa8de25cb558e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripUIxWD6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripUIxWD6 cat '/tmp/D7ZwpOL1of/stripUIxWD6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripUIxWD6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/17a3c19d1889353321ef20d90fa8de25cb558e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyWtDrF9 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyWtDrF9 cat '/tmp/D7ZwpOL1of/objcopyWtDrF9' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyWtDrF9 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 3d8de376b3e8b6324047ec46b4de3d00cc09556c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/8de376b3e8b6324047ec46b4de3d00cc09556c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/8de376b3e8b6324047ec46b4de3d00cc09556c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripwG9Qld debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripwG9Qld cat '/tmp/D7ZwpOL1of/stripwG9Qld' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripwG9Qld debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/8de376b3e8b6324047ec46b4de3d00cc09556c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0HHujr chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy0HHujr cat '/tmp/D7ZwpOL1of/objcopy0HHujr' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy0HHujr debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 874f159803aca78e447db3dde7279d2af45bd4a1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/4f159803aca78e447db3dde7279d2af45bd4a1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/4f159803aca78e447db3dde7279d2af45bd4a1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip5lyEpw debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip5lyEpw cat '/tmp/D7ZwpOL1of/strip5lyEpw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip5lyEpw debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/4f159803aca78e447db3dde7279d2af45bd4a1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjvCCSB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyjvCCSB cat '/tmp/D7ZwpOL1of/objcopyjvCCSB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyjvCCSB debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 67d1e3771fbdebb3f946344887a3a321c9776eed install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/d1e3771fbdebb3f946344887a3a321c9776eed.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/d1e3771fbdebb3f946344887a3a321c9776eed.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripJ3NXsD debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripJ3NXsD cat '/tmp/D7ZwpOL1of/stripJ3NXsD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripJ3NXsD debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/d1e3771fbdebb3f946344887a3a321c9776eed.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyHwM9j4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyHwM9j4 cat '/tmp/D7ZwpOL1of/objcopyHwM9j4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyHwM9j4 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 90b8828a339557e8eb125a3ebc99e822039bc445 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90/b8828a339557e8eb125a3ebc99e822039bc445.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90/b8828a339557e8eb125a3ebc99e822039bc445.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripFtFEk_ debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripFtFEk_ cat '/tmp/D7ZwpOL1of/stripFtFEk_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripFtFEk_ debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90/b8828a339557e8eb125a3ebc99e822039bc445.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyojT9gB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyojT9gB cat '/tmp/D7ZwpOL1of/objcopyojT9gB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyojT9gB debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 39f9fd7639868208574de4fcb42c35ff4a8eb4e3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/f9fd7639868208574de4fcb42c35ff4a8eb4e3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/f9fd7639868208574de4fcb42c35ff4a8eb4e3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripgmTjAm debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripgmTjAm cat '/tmp/D7ZwpOL1of/stripgmTjAm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripgmTjAm debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/f9fd7639868208574de4fcb42c35ff4a8eb4e3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyQYeaTf chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyQYeaTf cat '/tmp/D7ZwpOL1of/objcopyQYeaTf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyQYeaTf debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 1deb0cd98f5fa1bd08b46491c61e6f59625f71b9 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/eb0cd98f5fa1bd08b46491c61e6f59625f71b9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/eb0cd98f5fa1bd08b46491c61e6f59625f71b9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripEYwvgG debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripEYwvgG cat '/tmp/D7ZwpOL1of/stripEYwvgG' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripEYwvgG debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/eb0cd98f5fa1bd08b46491c61e6f59625f71b9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyAAJ8Ol chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyAAJ8Ol cat '/tmp/D7ZwpOL1of/objcopyAAJ8Ol' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyAAJ8Ol debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2315f2792c955520e496ba5f9804c70a54c51ebf install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/15f2792c955520e496ba5f9804c70a54c51ebf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/15f2792c955520e496ba5f9804c70a54c51ebf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripeiV2s9 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripeiV2s9 cat '/tmp/D7ZwpOL1of/stripeiV2s9' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripeiV2s9 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/15f2792c955520e496ba5f9804c70a54c51ebf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJIyqUF chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJIyqUF cat '/tmp/D7ZwpOL1of/objcopyJIyqUF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyJIyqUF debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9c1f76e2825d94b9e7d886c430edab44e38b9660 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/1f76e2825d94b9e7d886c430edab44e38b9660.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/1f76e2825d94b9e7d886c430edab44e38b9660.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripp1oJxA debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripp1oJxA cat '/tmp/D7ZwpOL1of/stripp1oJxA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripp1oJxA debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/1f76e2825d94b9e7d886c430edab44e38b9660.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyEmmJM0 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyEmmJM0 cat '/tmp/D7ZwpOL1of/objcopyEmmJM0' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyEmmJM0 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 c8110e6663af90d7cde5f7986a52b95d777d6c33 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/110e6663af90d7cde5f7986a52b95d777d6c33.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/110e6663af90d7cde5f7986a52b95d777d6c33.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip7VJMLj debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip7VJMLj cat '/tmp/D7ZwpOL1of/strip7VJMLj' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip7VJMLj debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/110e6663af90d7cde5f7986a52b95d777d6c33.debug debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyK_0zWh chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyK_0zWh cat '/tmp/D7ZwpOL1of/objcopyK_0zWh' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyK_0zWh debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 69e97148112b7eb33a88c5ccca056c4a0ce5e8be install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/e97148112b7eb33a88c5ccca056c4a0ce5e8be.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/e97148112b7eb33a88c5ccca056c4a0ce5e8be.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripFKd_YQ debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripFKd_YQ cat '/tmp/D7ZwpOL1of/stripFKd_YQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripFKd_YQ debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/e97148112b7eb33a88c5ccca056c4a0ce5e8be.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzOj0oQ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyzOj0oQ cat '/tmp/D7ZwpOL1of/objcopyzOj0oQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyzOj0oQ debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b0f4358e42265996bb0bf0710729c67b75303e81 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/f4358e42265996bb0bf0710729c67b75303e81.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/f4358e42265996bb0bf0710729c67b75303e81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripO2RS6O debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripO2RS6O cat '/tmp/D7ZwpOL1of/stripO2RS6O' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripO2RS6O debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/f4358e42265996bb0bf0710729c67b75303e81.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_uPTFC chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_uPTFC cat '/tmp/D7ZwpOL1of/objcopy_uPTFC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy_uPTFC debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 02d7578b160fc270e7123a211c55fdf4e908efdf install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/d7578b160fc270e7123a211c55fdf4e908efdf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/d7578b160fc270e7123a211c55fdf4e908efdf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripuAbHMU debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripuAbHMU cat '/tmp/D7ZwpOL1of/stripuAbHMU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripuAbHMU debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/d7578b160fc270e7123a211c55fdf4e908efdf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyT1U57U chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyT1U57U cat '/tmp/D7ZwpOL1of/objcopyT1U57U' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyT1U57U debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 94eea03382e288345f8764194df7a805f4b7485d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/eea03382e288345f8764194df7a805f4b7485d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/eea03382e288345f8764194df7a805f4b7485d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip0gmzQN debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip0gmzQN cat '/tmp/D7ZwpOL1of/strip0gmzQN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip0gmzQN debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/eea03382e288345f8764194df7a805f4b7485d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyu3cDZq chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyu3cDZq cat '/tmp/D7ZwpOL1of/objcopyu3cDZq' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyu3cDZq debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 23b5ce1185796778eba3f15e3015faf2476fe5eb install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/b5ce1185796778eba3f15e3015faf2476fe5eb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/b5ce1185796778eba3f15e3015faf2476fe5eb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripHLNRhV debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripHLNRhV cat '/tmp/D7ZwpOL1of/stripHLNRhV' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripHLNRhV debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/b5ce1185796778eba3f15e3015faf2476fe5eb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy5nOZYw chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy5nOZYw cat '/tmp/D7ZwpOL1of/objcopy5nOZYw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy5nOZYw debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4e7752d74a5c70436e34ce630512f12c813f9d70 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/7752d74a5c70436e34ce630512f12c813f9d70.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/7752d74a5c70436e34ce630512f12c813f9d70.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripfpSSwt debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripfpSSwt cat '/tmp/D7ZwpOL1of/stripfpSSwt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripfpSSwt debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/7752d74a5c70436e34ce630512f12c813f9d70.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypJaI29 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypJaI29 cat '/tmp/D7ZwpOL1of/objcopypJaI29' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopypJaI29 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 26623a2b0882a71cb9e6645f766a404303e4d2ca install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/623a2b0882a71cb9e6645f766a404303e4d2ca.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/623a2b0882a71cb9e6645f766a404303e4d2ca.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripg0YSuS debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripg0YSuS cat '/tmp/D7ZwpOL1of/stripg0YSuS' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripg0YSuS debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/623a2b0882a71cb9e6645f766a404303e4d2ca.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyEvaq7j chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyEvaq7j cat '/tmp/D7ZwpOL1of/objcopyEvaq7j' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyEvaq7j debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 57a1c2c46c9fdf9c030989b36d0c54f351574bdb install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/a1c2c46c9fdf9c030989b36d0c54f351574bdb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/a1c2c46c9fdf9c030989b36d0c54f351574bdb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip9NQAcN debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip9NQAcN cat '/tmp/D7ZwpOL1of/strip9NQAcN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip9NQAcN debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/a1c2c46c9fdf9c030989b36d0c54f351574bdb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyL8dE3b chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyL8dE3b cat '/tmp/D7ZwpOL1of/objcopyL8dE3b' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyL8dE3b debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 beff31ba9f99a79522b9765bd3b7239c9534ebf3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/ff31ba9f99a79522b9765bd3b7239c9534ebf3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/ff31ba9f99a79522b9765bd3b7239c9534ebf3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripXzABTN debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripXzABTN cat '/tmp/D7ZwpOL1of/stripXzABTN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripXzABTN debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/ff31ba9f99a79522b9765bd3b7239c9534ebf3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyAzqwOv chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyAzqwOv cat '/tmp/D7ZwpOL1of/objcopyAzqwOv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyAzqwOv debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 66e02082c053d923e8180f5e3e21bcbec69e34fd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/e02082c053d923e8180f5e3e21bcbec69e34fd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/e02082c053d923e8180f5e3e21bcbec69e34fd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripSsL8Yj debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripSsL8Yj cat '/tmp/D7ZwpOL1of/stripSsL8Yj' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripSsL8Yj debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/e02082c053d923e8180f5e3e21bcbec69e34fd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrXJFEB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrXJFEB cat '/tmp/D7ZwpOL1of/objcopyrXJFEB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyrXJFEB debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f4eaca2004b6710131189a6f885e19149c025905 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/eaca2004b6710131189a6f885e19149c025905.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/eaca2004b6710131189a6f885e19149c025905.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripY0pqGr debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripY0pqGr cat '/tmp/D7ZwpOL1of/stripY0pqGr' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripY0pqGr debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/eaca2004b6710131189a6f885e19149c025905.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBTvym2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBTvym2 cat '/tmp/D7ZwpOL1of/objcopyBTvym2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyBTvym2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d6af656f0d2e9fb8ebb62e3b7e2f92dd32efec32 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/af656f0d2e9fb8ebb62e3b7e2f92dd32efec32.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/af656f0d2e9fb8ebb62e3b7e2f92dd32efec32.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripeaDhkm debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripeaDhkm cat '/tmp/D7ZwpOL1of/stripeaDhkm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripeaDhkm debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/af656f0d2e9fb8ebb62e3b7e2f92dd32efec32.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy8NrULa chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy8NrULa cat '/tmp/D7ZwpOL1of/objcopy8NrULa' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy8NrULa debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b28f870edc3f4de17be6018395d4ea565b856c3a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/8f870edc3f4de17be6018395d4ea565b856c3a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/8f870edc3f4de17be6018395d4ea565b856c3a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripVESgQM debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripVESgQM cat '/tmp/D7ZwpOL1of/stripVESgQM' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripVESgQM debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/8f870edc3f4de17be6018395d4ea565b856c3a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKAze_l chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKAze_l cat '/tmp/D7ZwpOL1of/objcopyKAze_l' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyKAze_l debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 0e9e9727376438a3638db6f6312a5e90eec915d6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/9e9727376438a3638db6f6312a5e90eec915d6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/9e9727376438a3638db6f6312a5e90eec915d6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip1TQvmo debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip1TQvmo cat '/tmp/D7ZwpOL1of/strip1TQvmo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip1TQvmo debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/9e9727376438a3638db6f6312a5e90eec915d6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy118O_v chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy118O_v cat '/tmp/D7ZwpOL1of/objcopy118O_v' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy118O_v debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 803d0510414ce5f118da579c5487756d09ec7401 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/3d0510414ce5f118da579c5487756d09ec7401.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/3d0510414ce5f118da579c5487756d09ec7401.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striph7pIRk debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striph7pIRk cat '/tmp/D7ZwpOL1of/striph7pIRk' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/striph7pIRk debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/3d0510414ce5f118da579c5487756d09ec7401.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy5mit5a chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy5mit5a cat '/tmp/D7ZwpOL1of/objcopy5mit5a' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy5mit5a debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d8aa162d2d3d01a0e21fd7608099bcf67dc0e9e2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/aa162d2d3d01a0e21fd7608099bcf67dc0e9e2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/aa162d2d3d01a0e21fd7608099bcf67dc0e9e2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripzsGzPw debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripzsGzPw cat '/tmp/D7ZwpOL1of/stripzsGzPw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripzsGzPw debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/aa162d2d3d01a0e21fd7608099bcf67dc0e9e2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLJ1x5U chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyLJ1x5U cat '/tmp/D7ZwpOL1of/objcopyLJ1x5U' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyLJ1x5U debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 80c1af3e511b1afc62a8ad54532197d57dc63bd7 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/c1af3e511b1afc62a8ad54532197d57dc63bd7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/c1af3e511b1afc62a8ad54532197d57dc63bd7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripGjrvsn debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripGjrvsn cat '/tmp/D7ZwpOL1of/stripGjrvsn' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripGjrvsn debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/80/c1af3e511b1afc62a8ad54532197d57dc63bd7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrgwQ1C chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrgwQ1C cat '/tmp/D7ZwpOL1of/objcopyrgwQ1C' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyrgwQ1C debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 83a71218eadd46beffd610854f1135fe10edc2ef install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/a71218eadd46beffd610854f1135fe10edc2ef.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/a71218eadd46beffd610854f1135fe10edc2ef.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip5dthXY debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip5dthXY cat '/tmp/D7ZwpOL1of/strip5dthXY' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip5dthXY debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/a71218eadd46beffd610854f1135fe10edc2ef.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyOdcQq0 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyOdcQq0 cat '/tmp/D7ZwpOL1of/objcopyOdcQq0' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyOdcQq0 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 76962b73a3a107f91f7cd0a9fb0e28e2412807b5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/962b73a3a107f91f7cd0a9fb0e28e2412807b5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/962b73a3a107f91f7cd0a9fb0e28e2412807b5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striplqdqyB debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striplqdqyB cat '/tmp/D7ZwpOL1of/striplqdqyB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/striplqdqyB debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/962b73a3a107f91f7cd0a9fb0e28e2412807b5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyqGqXLm chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyqGqXLm cat '/tmp/D7ZwpOL1of/objcopyqGqXLm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyqGqXLm debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 3b72c605ff140bf1d579dd452cf8ee5585847a00 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/72c605ff140bf1d579dd452cf8ee5585847a00.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/72c605ff140bf1d579dd452cf8ee5585847a00.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripxrzU9E debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripxrzU9E cat '/tmp/D7ZwpOL1of/stripxrzU9E' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripxrzU9E debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/72c605ff140bf1d579dd452cf8ee5585847a00.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBNlsIb chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBNlsIb cat '/tmp/D7ZwpOL1of/objcopyBNlsIb' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyBNlsIb debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8ad7b874d2c19aed3899fd1f17f06f98ec1a6146 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/d7b874d2c19aed3899fd1f17f06f98ec1a6146.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/d7b874d2c19aed3899fd1f17f06f98ec1a6146.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripV_11H8 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripV_11H8 cat '/tmp/D7ZwpOL1of/stripV_11H8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripV_11H8 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/d7b874d2c19aed3899fd1f17f06f98ec1a6146.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy7UPMY1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy7UPMY1 cat '/tmp/D7ZwpOL1of/objcopy7UPMY1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy7UPMY1 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 06e3b9d87e2958f4bbb8930cc3120c29e23a7d03 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/e3b9d87e2958f4bbb8930cc3120c29e23a7d03.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/e3b9d87e2958f4bbb8930cc3120c29e23a7d03.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip7hANyp debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip7hANyp cat '/tmp/D7ZwpOL1of/strip7hANyp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip7hANyp debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/e3b9d87e2958f4bbb8930cc3120c29e23a7d03.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKqPzT4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKqPzT4 cat '/tmp/D7ZwpOL1of/objcopyKqPzT4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyKqPzT4 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 e8f23a6521244d5cfe91bdf69e37011538dc1648 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/f23a6521244d5cfe91bdf69e37011538dc1648.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/f23a6521244d5cfe91bdf69e37011538dc1648.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripgO0Lap debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripgO0Lap cat '/tmp/D7ZwpOL1of/stripgO0Lap' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripgO0Lap debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/f23a6521244d5cfe91bdf69e37011538dc1648.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypAPV9_ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopypAPV9_ cat '/tmp/D7ZwpOL1of/objcopypAPV9_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopypAPV9_ debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 0d3927808789c823bc2af5e40efaba4d2e1dffd3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d/3927808789c823bc2af5e40efaba4d2e1dffd3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d/3927808789c823bc2af5e40efaba4d2e1dffd3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripNvtl1Y debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripNvtl1Y cat '/tmp/D7ZwpOL1of/stripNvtl1Y' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripNvtl1Y debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d/3927808789c823bc2af5e40efaba4d2e1dffd3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy4NpsAC chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy4NpsAC cat '/tmp/D7ZwpOL1of/objcopy4NpsAC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy4NpsAC debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 dee1a0d3811e418c123f8ede0e7598067eb5c813 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/e1a0d3811e418c123f8ede0e7598067eb5c813.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/e1a0d3811e418c123f8ede0e7598067eb5c813.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripFgqmRv debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripFgqmRv cat '/tmp/D7ZwpOL1of/stripFgqmRv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripFgqmRv debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/e1a0d3811e418c123f8ede0e7598067eb5c813.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyx9byvQ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyx9byvQ cat '/tmp/D7ZwpOL1of/objcopyx9byvQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyx9byvQ debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 3df29f9a64ad8eb01552f07d6e3592ac8a0aaa64 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/f29f9a64ad8eb01552f07d6e3592ac8a0aaa64.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/f29f9a64ad8eb01552f07d6e3592ac8a0aaa64.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripaJUC3w debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripaJUC3w cat '/tmp/D7ZwpOL1of/stripaJUC3w' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripaJUC3w debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/f29f9a64ad8eb01552f07d6e3592ac8a0aaa64.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJgZSjm chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyJgZSjm cat '/tmp/D7ZwpOL1of/objcopyJgZSjm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyJgZSjm debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9ed960862358fb23b2650c8f25e1bd47a0871807 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/d960862358fb23b2650c8f25e1bd47a0871807.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/d960862358fb23b2650c8f25e1bd47a0871807.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripZHGBJd debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripZHGBJd cat '/tmp/D7ZwpOL1of/stripZHGBJd' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripZHGBJd debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/d960862358fb23b2650c8f25e1bd47a0871807.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKPa9jK chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyKPa9jK cat '/tmp/D7ZwpOL1of/objcopyKPa9jK' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyKPa9jK debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b8c8a3b1e6f5f4306944e1279c20ed7b8931d152 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/c8a3b1e6f5f4306944e1279c20ed7b8931d152.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/c8a3b1e6f5f4306944e1279c20ed7b8931d152.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripFLhyS0 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripFLhyS0 cat '/tmp/D7ZwpOL1of/stripFLhyS0' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripFLhyS0 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/c8a3b1e6f5f4306944e1279c20ed7b8931d152.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopye3wDQt chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopye3wDQt cat '/tmp/D7ZwpOL1of/objcopye3wDQt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopye3wDQt debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 593f55b53663b5ce8789dd85f70491465ed054ae install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/3f55b53663b5ce8789dd85f70491465ed054ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/3f55b53663b5ce8789dd85f70491465ed054ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripKqa0Mb debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripKqa0Mb cat '/tmp/D7ZwpOL1of/stripKqa0Mb' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripKqa0Mb debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/3f55b53663b5ce8789dd85f70491465ed054ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybdRGDE chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopybdRGDE cat '/tmp/D7ZwpOL1of/objcopybdRGDE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopybdRGDE debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2db59a76e62fa5c3cf83806c0cc6da1a0f03c507 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d/b59a76e62fa5c3cf83806c0cc6da1a0f03c507.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d/b59a76e62fa5c3cf83806c0cc6da1a0f03c507.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripwxdobE debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripwxdobE cat '/tmp/D7ZwpOL1of/stripwxdobE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripwxdobE debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d/b59a76e62fa5c3cf83806c0cc6da1a0f03c507.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy2ACRkt chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy2ACRkt cat '/tmp/D7ZwpOL1of/objcopy2ACRkt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy2ACRkt debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9b7f9c03db18905cfa7bcd42505792b4a6e5967f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/7f9c03db18905cfa7bcd42505792b4a6e5967f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/7f9c03db18905cfa7bcd42505792b4a6e5967f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip0yvHz5 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip0yvHz5 cat '/tmp/D7ZwpOL1of/strip0yvHz5' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip0yvHz5 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/7f9c03db18905cfa7bcd42505792b4a6e5967f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_PpBaN chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_PpBaN cat '/tmp/D7ZwpOL1of/objcopy_PpBaN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy_PpBaN debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5a9a6a16d505a0d01a6692fc6b1ffadca94da099 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/9a6a16d505a0d01a6692fc6b1ffadca94da099.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/9a6a16d505a0d01a6692fc6b1ffadca94da099.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripK6oQQy debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripK6oQQy cat '/tmp/D7ZwpOL1of/stripK6oQQy' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripK6oQQy debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/9a6a16d505a0d01a6692fc6b1ffadca94da099.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyFBdidj chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyFBdidj cat '/tmp/D7ZwpOL1of/objcopyFBdidj' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyFBdidj debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9a9103964ba9a0bbad9ccd2b8151acd99940518c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/9103964ba9a0bbad9ccd2b8151acd99940518c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/9103964ba9a0bbad9ccd2b8151acd99940518c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip7pR_Yu debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip7pR_Yu cat '/tmp/D7ZwpOL1of/strip7pR_Yu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip7pR_Yu debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/9103964ba9a0bbad9ccd2b8151acd99940518c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyFbTA6z chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyFbTA6z cat '/tmp/D7ZwpOL1of/objcopyFbTA6z' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyFbTA6z debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8d9259b4e7c60455c494a1c8472b792b9f104aba install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/9259b4e7c60455c494a1c8472b792b9f104aba.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/9259b4e7c60455c494a1c8472b792b9f104aba.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striplF0Hfu debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striplF0Hfu cat '/tmp/D7ZwpOL1of/striplF0Hfu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/striplF0Hfu debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/9259b4e7c60455c494a1c8472b792b9f104aba.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBiE4ix chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyBiE4ix cat '/tmp/D7ZwpOL1of/objcopyBiE4ix' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyBiE4ix debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 f53e4902bcda163038292eae7973b4655341c173 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/3e4902bcda163038292eae7973b4655341c173.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/3e4902bcda163038292eae7973b4655341c173.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripvfUk0M debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripvfUk0M cat '/tmp/D7ZwpOL1of/stripvfUk0M' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripvfUk0M debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/3e4902bcda163038292eae7973b4655341c173.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrP1qcn chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrP1qcn cat '/tmp/D7ZwpOL1of/objcopyrP1qcn' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyrP1qcn debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 16151e019ac97f60c967ff70dbcf18e90e1b636e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16/151e019ac97f60c967ff70dbcf18e90e1b636e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16/151e019ac97f60c967ff70dbcf18e90e1b636e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripiuBS4l debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripiuBS4l cat '/tmp/D7ZwpOL1of/stripiuBS4l' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripiuBS4l debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16/151e019ac97f60c967ff70dbcf18e90e1b636e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy4B_J8u chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy4B_J8u cat '/tmp/D7ZwpOL1of/objcopy4B_J8u' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy4B_J8u debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5cc06e9e30049258c857a3723d82278af0ed219e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/c06e9e30049258c857a3723d82278af0ed219e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/c06e9e30049258c857a3723d82278af0ed219e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip17xfib debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip17xfib cat '/tmp/D7ZwpOL1of/strip17xfib' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip17xfib debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/c06e9e30049258c857a3723d82278af0ed219e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopylpAOoL chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopylpAOoL cat '/tmp/D7ZwpOL1of/objcopylpAOoL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopylpAOoL debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 7a338d3aef00bc448d51d6e43614168a16697bc8 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/338d3aef00bc448d51d6e43614168a16697bc8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/338d3aef00bc448d51d6e43614168a16697bc8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripO25z1W debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripO25z1W cat '/tmp/D7ZwpOL1of/stripO25z1W' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripO25z1W debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/338d3aef00bc448d51d6e43614168a16697bc8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyaCvaHX chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyaCvaHX cat '/tmp/D7ZwpOL1of/objcopyaCvaHX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyaCvaHX debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 36c7b7b91bf48a723ddf4ca8587c1d77017abe6a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/c7b7b91bf48a723ddf4ca8587c1d77017abe6a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/c7b7b91bf48a723ddf4ca8587c1d77017abe6a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripfb4_gv debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripfb4_gv cat '/tmp/D7ZwpOL1of/stripfb4_gv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripfb4_gv debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/c7b7b91bf48a723ddf4ca8587c1d77017abe6a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyo0nRBb chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyo0nRBb cat '/tmp/D7ZwpOL1of/objcopyo0nRBb' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyo0nRBb debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ec8ee011249547478f9f1c32477e2926c47c1148 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/8ee011249547478f9f1c32477e2926c47c1148.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/8ee011249547478f9f1c32477e2926c47c1148.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripuEAUNB debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripuEAUNB cat '/tmp/D7ZwpOL1of/stripuEAUNB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripuEAUNB debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/8ee011249547478f9f1c32477e2926c47c1148.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6imO8I chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6imO8I cat '/tmp/D7ZwpOL1of/objcopy6imO8I' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy6imO8I debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 859d79cdaf9e6c637daaa2ae3bcfd19639185180 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/9d79cdaf9e6c637daaa2ae3bcfd19639185180.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/9d79cdaf9e6c637daaa2ae3bcfd19639185180.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripv2u8OU debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripv2u8OU cat '/tmp/D7ZwpOL1of/stripv2u8OU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripv2u8OU debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/9d79cdaf9e6c637daaa2ae3bcfd19639185180.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyAe1xkf chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyAe1xkf cat '/tmp/D7ZwpOL1of/objcopyAe1xkf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyAe1xkf debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 1c897ea86789e1e3bcd47390e022e982a6b1195c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c/897ea86789e1e3bcd47390e022e982a6b1195c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c/897ea86789e1e3bcd47390e022e982a6b1195c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripumC713 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripumC713 cat '/tmp/D7ZwpOL1of/stripumC713' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripumC713 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c/897ea86789e1e3bcd47390e022e982a6b1195c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrsWU0Y chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyrsWU0Y cat '/tmp/D7ZwpOL1of/objcopyrsWU0Y' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyrsWU0Y debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1a65e0e4463788f0cbb24f9e5641a5b54e7c011b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/65e0e4463788f0cbb24f9e5641a5b54e7c011b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/65e0e4463788f0cbb24f9e5641a5b54e7c011b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip_0mzXs debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip_0mzXs cat '/tmp/D7ZwpOL1of/strip_0mzXs' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip_0mzXs debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/65e0e4463788f0cbb24f9e5641a5b54e7c011b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyQOgt6Z chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyQOgt6Z cat '/tmp/D7ZwpOL1of/objcopyQOgt6Z' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyQOgt6Z debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 618d8ea392dce690651f0be87abf036c114a0e80 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61/8d8ea392dce690651f0be87abf036c114a0e80.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61/8d8ea392dce690651f0be87abf036c114a0e80.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/strip9SwA1v debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/strip9SwA1v cat '/tmp/D7ZwpOL1of/strip9SwA1v' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/strip9SwA1v debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61/8d8ea392dce690651f0be87abf036c114a0e80.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6zLKN2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy6zLKN2 cat '/tmp/D7ZwpOL1of/objcopy6zLKN2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy6zLKN2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 bfb9fb1d0dd872883b39a5b07b6b72d4a5b85c02 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/b9fb1d0dd872883b39a5b07b6b72d4a5b85c02.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/b9fb1d0dd872883b39a5b07b6b72d4a5b85c02.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripJizr1E debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripJizr1E cat '/tmp/D7ZwpOL1of/stripJizr1E' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripJizr1E debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/b9fb1d0dd872883b39a5b07b6b72d4a5b85c02.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyw4lzma chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyw4lzma cat '/tmp/D7ZwpOL1of/objcopyw4lzma' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyw4lzma debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f2cdbbdb7dbdecedcb2bdf8c3290a55edf043288 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/cdbbdb7dbdecedcb2bdf8c3290a55edf043288.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/cdbbdb7dbdecedcb2bdf8c3290a55edf043288.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripzpzs1z debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripzpzs1z cat '/tmp/D7ZwpOL1of/stripzpzs1z' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripzpzs1z debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/cdbbdb7dbdecedcb2bdf8c3290a55edf043288.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyZRwWnu chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyZRwWnu cat '/tmp/D7ZwpOL1of/objcopyZRwWnu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyZRwWnu debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d7fb10593ee281f6f8ad1451697c14e4eb2b61bf install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7/fb10593ee281f6f8ad1451697c14e4eb2b61bf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7/fb10593ee281f6f8ad1451697c14e4eb2b61bf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripRbmvGP debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripRbmvGP cat '/tmp/D7ZwpOL1of/stripRbmvGP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripRbmvGP debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7/fb10593ee281f6f8ad1451697c14e4eb2b61bf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyyNCi5N chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopyyNCi5N cat '/tmp/D7ZwpOL1of/objcopyyNCi5N' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopyyNCi5N debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 ed2b3bbc516eee5314087905418410f4b769ff13 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/2b3bbc516eee5314087905418410f4b769ff13.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/2b3bbc516eee5314087905418410f4b769ff13.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/stripBFN5aa debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/stripBFN5aa cat '/tmp/D7ZwpOL1of/stripBFN5aa' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/stripBFN5aa debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/2b3bbc516eee5314087905418410f4b769ff13.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykm2sMt chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopykm2sMt cat '/tmp/D7ZwpOL1of/objcopykm2sMt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopykm2sMt debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 930c0c48795141df73e3de051495531abee21a21 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/0c0c48795141df73e3de051495531abee21a21.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/0c0c48795141df73e3de051495531abee21a21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/D7ZwpOL1of/striptJ6t_E debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/striptJ6t_E cat '/tmp/D7ZwpOL1of/striptJ6t_E' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/striptJ6t_E debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/93/0c0c48795141df73e3de051495531abee21a21.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_W0D6l chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so /tmp/D7ZwpOL1of/objcopy_W0D6l cat '/tmp/D7ZwpOL1of/objcopy_W0D6l' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/D7ZwpOL1of/objcopy_W0D6l debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debugedit: debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry: Unknown DWARF DW_FORM_0x1f21 c931857b412c0b2a08a9a852f302941a29f016b2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/31857b412c0b2a08a9a852f302941a29f016b2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/31857b412c0b2a08a9a852f302941a29f016b2.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripjXtwQk debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry chmod --reference debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry /tmp/D7ZwpOL1of/stripjXtwQk cat '/tmp/D7ZwpOL1of/stripjXtwQk' > 'debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry' chmod --reference /tmp/D7ZwpOL1of/stripjXtwQk debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/31857b412c0b2a08a9a852f302941a29f016b2.debug debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry /tmp/D7ZwpOL1of/objcopyrwiTEF chmod --reference debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry /tmp/D7ZwpOL1of/objcopyrwiTEF cat '/tmp/D7ZwpOL1of/objcopyrwiTEF' > 'debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry' chmod --reference /tmp/D7ZwpOL1of/objcopyrwiTEF debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debugedit: debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups: Unknown DWARF DW_FORM_0x1f21 ef537c101faf45d2108db22e963f497c1407a97d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/537c101faf45d2108db22e963f497c1407a97d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/537c101faf45d2108db22e963f497c1407a97d.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripTtZwMG debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups chmod --reference debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups /tmp/D7ZwpOL1of/stripTtZwMG cat '/tmp/D7ZwpOL1of/stripTtZwMG' > 'debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups' chmod --reference /tmp/D7ZwpOL1of/stripTtZwMG debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/537c101faf45d2108db22e963f497c1407a97d.debug debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups /tmp/D7ZwpOL1of/objcopyvyQJcP chmod --reference debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups /tmp/D7ZwpOL1of/objcopyvyQJcP cat '/tmp/D7ZwpOL1of/objcopyvyQJcP' > 'debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups' chmod --reference /tmp/D7ZwpOL1of/objcopyvyQJcP debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debugedit: debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites: Unknown DWARF DW_FORM_0x1f20 dabcd62902f3193f168efe8169dcd932139f6cea install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/bcd62902f3193f168efe8169dcd932139f6cea.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/bcd62902f3193f168efe8169dcd932139f6cea.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripn3rGQq debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites chmod --reference debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites /tmp/D7ZwpOL1of/stripn3rGQq cat '/tmp/D7ZwpOL1of/stripn3rGQq' > 'debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites' chmod --reference /tmp/D7ZwpOL1of/stripn3rGQq debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/bcd62902f3193f168efe8169dcd932139f6cea.debug debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites /tmp/D7ZwpOL1of/objcopyZFZLqK chmod --reference debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites /tmp/D7ZwpOL1of/objcopyZFZLqK cat '/tmp/D7ZwpOL1of/objcopyZFZLqK' > 'debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites' chmod --reference /tmp/D7ZwpOL1of/objcopyZFZLqK debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cbflib.tst_memory debugedit: debian/python3-cctbx/usr/bin/cbflib.tst_memory: Unknown DWARF DW_FORM_0x1f20 e73c4d16f13898ec6ea95ca03bce2f5cffd8bdd1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/3c4d16f13898ec6ea95ca03bce2f5cffd8bdd1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/3c4d16f13898ec6ea95ca03bce2f5cffd8bdd1.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/strip2b6CGX debian/python3-cctbx/usr/bin/cbflib.tst_memory chmod --reference debian/python3-cctbx/usr/bin/cbflib.tst_memory /tmp/D7ZwpOL1of/strip2b6CGX cat '/tmp/D7ZwpOL1of/strip2b6CGX' > 'debian/python3-cctbx/usr/bin/cbflib.tst_memory' chmod --reference /tmp/D7ZwpOL1of/strip2b6CGX debian/python3-cctbx/usr/bin/cbflib.tst_memory objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/3c4d16f13898ec6ea95ca03bce2f5cffd8bdd1.debug debian/python3-cctbx/usr/bin/cbflib.tst_memory /tmp/D7ZwpOL1of/objcopy2eOeQL chmod --reference debian/python3-cctbx/usr/bin/cbflib.tst_memory /tmp/D7ZwpOL1of/objcopy2eOeQL cat '/tmp/D7ZwpOL1of/objcopy2eOeQL' > 'debian/python3-cctbx/usr/bin/cbflib.tst_memory' chmod --reference /tmp/D7ZwpOL1of/objcopy2eOeQL debian/python3-cctbx/usr/bin/cbflib.tst_memory debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cctbx_blobs debugedit: debian/python3-cctbx/usr/bin/cctbx_blobs: Unknown DWARF DW_FORM_0x1f20 a10336211d0fc69dac0bad87b6789842307aae11 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx_blobs debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/0336211d0fc69dac0bad87b6789842307aae11.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/0336211d0fc69dac0bad87b6789842307aae11.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripnVyZlx debian/python3-cctbx/usr/bin/cctbx_blobs chmod --reference debian/python3-cctbx/usr/bin/cctbx_blobs /tmp/D7ZwpOL1of/stripnVyZlx cat '/tmp/D7ZwpOL1of/stripnVyZlx' > 'debian/python3-cctbx/usr/bin/cctbx_blobs' chmod --reference /tmp/D7ZwpOL1of/stripnVyZlx debian/python3-cctbx/usr/bin/cctbx_blobs objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/0336211d0fc69dac0bad87b6789842307aae11.debug debian/python3-cctbx/usr/bin/cctbx_blobs /tmp/D7ZwpOL1of/objcopyXyA5k_ chmod --reference debian/python3-cctbx/usr/bin/cctbx_blobs /tmp/D7ZwpOL1of/objcopyXyA5k_ cat '/tmp/D7ZwpOL1of/objcopyXyA5k_' > 'debian/python3-cctbx/usr/bin/cctbx_blobs' chmod --reference /tmp/D7ZwpOL1of/objcopyXyA5k_ debian/python3-cctbx/usr/bin/cctbx_blobs debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cctbx.find_distances debugedit: debian/python3-cctbx/usr/bin/cctbx.find_distances: Unknown DWARF DW_FORM_0x1f21 5d6ab38d4eb6da6ec168aad4d31f7a92e3e1561f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.find_distances debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/6ab38d4eb6da6ec168aad4d31f7a92e3e1561f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/6ab38d4eb6da6ec168aad4d31f7a92e3e1561f.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripKy6GmX debian/python3-cctbx/usr/bin/cctbx.find_distances chmod --reference debian/python3-cctbx/usr/bin/cctbx.find_distances /tmp/D7ZwpOL1of/stripKy6GmX cat '/tmp/D7ZwpOL1of/stripKy6GmX' > 'debian/python3-cctbx/usr/bin/cctbx.find_distances' chmod --reference /tmp/D7ZwpOL1of/stripKy6GmX debian/python3-cctbx/usr/bin/cctbx.find_distances objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/6ab38d4eb6da6ec168aad4d31f7a92e3e1561f.debug debian/python3-cctbx/usr/bin/cctbx.find_distances /tmp/D7ZwpOL1of/objcopysLdvpL chmod --reference debian/python3-cctbx/usr/bin/cctbx.find_distances /tmp/D7ZwpOL1of/objcopysLdvpL cat '/tmp/D7ZwpOL1of/objcopysLdvpL' > 'debian/python3-cctbx/usr/bin/cctbx.find_distances' chmod --reference /tmp/D7ZwpOL1of/objcopysLdvpL debian/python3-cctbx/usr/bin/cctbx.find_distances debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cctbx.getting_started debugedit: debian/python3-cctbx/usr/bin/cctbx.getting_started: Unknown DWARF DW_FORM_0x1f20 c670870bdd424692aee93546329a61b386ef1e6b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.getting_started debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/70870bdd424692aee93546329a61b386ef1e6b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/70870bdd424692aee93546329a61b386ef1e6b.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripawpXqq debian/python3-cctbx/usr/bin/cctbx.getting_started chmod --reference debian/python3-cctbx/usr/bin/cctbx.getting_started /tmp/D7ZwpOL1of/stripawpXqq cat '/tmp/D7ZwpOL1of/stripawpXqq' > 'debian/python3-cctbx/usr/bin/cctbx.getting_started' chmod --reference /tmp/D7ZwpOL1of/stripawpXqq debian/python3-cctbx/usr/bin/cctbx.getting_started objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/70870bdd424692aee93546329a61b386ef1e6b.debug debian/python3-cctbx/usr/bin/cctbx.getting_started /tmp/D7ZwpOL1of/objcopys5BoQQ chmod --reference debian/python3-cctbx/usr/bin/cctbx.getting_started /tmp/D7ZwpOL1of/objcopys5BoQQ cat '/tmp/D7ZwpOL1of/objcopys5BoQQ' > 'debian/python3-cctbx/usr/bin/cctbx.getting_started' chmod --reference /tmp/D7ZwpOL1of/objcopys5BoQQ debian/python3-cctbx/usr/bin/cctbx.getting_started debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debugedit: debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib: Unknown DWARF DW_FORM_0x1f20 5d1eae4ee14846edd658552b1554a3c2923d4710 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/1eae4ee14846edd658552b1554a3c2923d4710.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/1eae4ee14846edd658552b1554a3c2923d4710.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripGHbi1q debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib chmod --reference debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib /tmp/D7ZwpOL1of/stripGHbi1q cat '/tmp/D7ZwpOL1of/stripGHbi1q' > 'debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib' chmod --reference /tmp/D7ZwpOL1of/stripGHbi1q debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/1eae4ee14846edd658552b1554a3c2923d4710.debug debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib /tmp/D7ZwpOL1of/objcopyTQrsWp chmod --reference debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib /tmp/D7ZwpOL1of/objcopyTQrsWp cat '/tmp/D7ZwpOL1of/objcopyTQrsWp' > 'debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib' chmod --reference /tmp/D7ZwpOL1of/objcopyTQrsWp debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst: Unknown DWARF DW_FORM_0x1f20 819e076f3ac9907e61d21e7d7246a4b1e7a2f6be install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/9e076f3ac9907e61d21e7d7246a4b1e7a2f6be.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/9e076f3ac9907e61d21e7d7246a4b1e7a2f6be.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripb2WaGf debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst /tmp/D7ZwpOL1of/stripb2WaGf cat '/tmp/D7ZwpOL1of/stripb2WaGf' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst' chmod --reference /tmp/D7ZwpOL1of/stripb2WaGf debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/9e076f3ac9907e61d21e7d7246a4b1e7a2f6be.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst /tmp/D7ZwpOL1of/objcopyWkzYGX chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst /tmp/D7ZwpOL1of/objcopyWkzYGX cat '/tmp/D7ZwpOL1of/objcopyWkzYGX' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst' chmod --reference /tmp/D7ZwpOL1of/objcopyWkzYGX debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256: Unknown DWARF DW_FORM_0x1f20 1d220fbdfc4fa904fd4f458a9860a4ef0dd4a17f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/220fbdfc4fa904fd4f458a9860a4ef0dd4a17f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/220fbdfc4fa904fd4f458a9860a4ef0dd4a17f.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripWjU2Zv debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 /tmp/D7ZwpOL1of/stripWjU2Zv cat '/tmp/D7ZwpOL1of/stripWjU2Zv' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256' chmod --reference /tmp/D7ZwpOL1of/stripWjU2Zv debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/220fbdfc4fa904fd4f458a9860a4ef0dd4a17f.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 /tmp/D7ZwpOL1of/objcopyFVpyzd chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 /tmp/D7ZwpOL1of/objcopyFVpyzd cat '/tmp/D7ZwpOL1of/objcopyFVpyzd' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256' chmod --reference /tmp/D7ZwpOL1of/objcopyFVpyzd debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs: Unknown DWARF DW_FORM_0x1f20 df5fbc8f2f01dc823e0eb0c7be62d880e6a86194 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/5fbc8f2f01dc823e0eb0c7be62d880e6a86194.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/5fbc8f2f01dc823e0eb0c7be62d880e6a86194.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/strip6ZfV3r debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs /tmp/D7ZwpOL1of/strip6ZfV3r cat '/tmp/D7ZwpOL1of/strip6ZfV3r' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs' chmod --reference /tmp/D7ZwpOL1of/strip6ZfV3r debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/5fbc8f2f01dc823e0eb0c7be62d880e6a86194.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs /tmp/D7ZwpOL1of/objcopyCbDbGo chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs /tmp/D7ZwpOL1of/objcopyCbDbGo cat '/tmp/D7ZwpOL1of/objcopyCbDbGo' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs' chmod --reference /tmp/D7ZwpOL1of/objcopyCbDbGo debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed: Unknown DWARF DW_FORM_0x1f20 9e4f7342cc83d888fe3f6a55aa06cf4b343cf05c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/4f7342cc83d888fe3f6a55aa06cf4b343cf05c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/4f7342cc83d888fe3f6a55aa06cf4b343cf05c.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripbmpQvm debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed /tmp/D7ZwpOL1of/stripbmpQvm cat '/tmp/D7ZwpOL1of/stripbmpQvm' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed' chmod --reference /tmp/D7ZwpOL1of/stripbmpQvm debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/4f7342cc83d888fe3f6a55aa06cf4b343cf05c.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed /tmp/D7ZwpOL1of/objcopydbzSm9 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed /tmp/D7ZwpOL1of/objcopydbzSm9 cat '/tmp/D7ZwpOL1of/objcopydbzSm9' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed' chmod --reference /tmp/D7ZwpOL1of/objcopydbzSm9 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2: Unknown DWARF DW_FORM_0x1f20 2c22b182bd3a19d387a83574423273baa2219e26 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/22b182bd3a19d387a83574423273baa2219e26.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/22b182bd3a19d387a83574423273baa2219e26.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripnqKxK5 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 /tmp/D7ZwpOL1of/stripnqKxK5 cat '/tmp/D7ZwpOL1of/stripnqKxK5' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2' chmod --reference /tmp/D7ZwpOL1of/stripnqKxK5 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/22b182bd3a19d387a83574423273baa2219e26.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 /tmp/D7ZwpOL1of/objcopy84IO79 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 /tmp/D7ZwpOL1of/objcopy84IO79 cat '/tmp/D7ZwpOL1of/objcopy84IO79' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2' chmod --reference /tmp/D7ZwpOL1of/objcopy84IO79 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1: Unknown DWARF DW_FORM_0x1f21 d19698324af2171eb1b9a8186abf0da220514f0d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/9698324af2171eb1b9a8186abf0da220514f0d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/9698324af2171eb1b9a8186abf0da220514f0d.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripA3ak3g debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 /tmp/D7ZwpOL1of/stripA3ak3g cat '/tmp/D7ZwpOL1of/stripA3ak3g' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1' chmod --reference /tmp/D7ZwpOL1of/stripA3ak3g debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/9698324af2171eb1b9a8186abf0da220514f0d.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 /tmp/D7ZwpOL1of/objcopyTbXK1s chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 /tmp/D7ZwpOL1of/objcopyTbXK1s cat '/tmp/D7ZwpOL1of/objcopyTbXK1s' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1' chmod --reference /tmp/D7ZwpOL1of/objcopyTbXK1s debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5: Unknown DWARF DW_FORM_0x1f20 ac7069b3aa0c8c177e0876bfb60727d844361738 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/7069b3aa0c8c177e0876bfb60727d844361738.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/7069b3aa0c8c177e0876bfb60727d844361738.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/strip4stQID debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 /tmp/D7ZwpOL1of/strip4stQID cat '/tmp/D7ZwpOL1of/strip4stQID' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5' chmod --reference /tmp/D7ZwpOL1of/strip4stQID debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/7069b3aa0c8c177e0876bfb60727d844361738.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 /tmp/D7ZwpOL1of/objcopyOxIoBZ chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 /tmp/D7ZwpOL1of/objcopyOxIoBZ cat '/tmp/D7ZwpOL1of/objcopyOxIoBZ' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5' chmod --reference /tmp/D7ZwpOL1of/objcopyOxIoBZ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3: Unknown DWARF DW_FORM_0x1f20 557ec4928678153ae2e128692c069c8b6a1b76d1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/7ec4928678153ae2e128692c069c8b6a1b76d1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/7ec4928678153ae2e128692c069c8b6a1b76d1.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripLzlpF3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 /tmp/D7ZwpOL1of/stripLzlpF3 cat '/tmp/D7ZwpOL1of/stripLzlpF3' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3' chmod --reference /tmp/D7ZwpOL1of/stripLzlpF3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/7ec4928678153ae2e128692c069c8b6a1b76d1.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 /tmp/D7ZwpOL1of/objcopyaGgFyN chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 /tmp/D7ZwpOL1of/objcopyaGgFyN cat '/tmp/D7ZwpOL1of/objcopyaGgFyN' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3' chmod --reference /tmp/D7ZwpOL1of/objcopyaGgFyN debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3: Unknown DWARF DW_FORM_0x1f20 2a028da12399c1b2711f83baad2eb33820b879b3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/028da12399c1b2711f83baad2eb33820b879b3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/028da12399c1b2711f83baad2eb33820b879b3.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripdmZjL7 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 /tmp/D7ZwpOL1of/stripdmZjL7 cat '/tmp/D7ZwpOL1of/stripdmZjL7' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3' chmod --reference /tmp/D7ZwpOL1of/stripdmZjL7 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/028da12399c1b2711f83baad2eb33820b879b3.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 /tmp/D7ZwpOL1of/objcopyAcD_hm chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 /tmp/D7ZwpOL1of/objcopyAcD_hm cat '/tmp/D7ZwpOL1of/objcopyAcD_hm' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3' chmod --reference /tmp/D7ZwpOL1of/objcopyAcD_hm debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic: Unknown DWARF DW_FORM_0x1f20 b1b45b6bd0a5c96347019f265499f711f2861b43 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/b45b6bd0a5c96347019f265499f711f2861b43.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/b45b6bd0a5c96347019f265499f711f2861b43.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/striprsf9ZA debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic /tmp/D7ZwpOL1of/striprsf9ZA cat '/tmp/D7ZwpOL1of/striprsf9ZA' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic' chmod --reference /tmp/D7ZwpOL1of/striprsf9ZA debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/b45b6bd0a5c96347019f265499f711f2861b43.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic /tmp/D7ZwpOL1of/objcopyFC1UbR chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic /tmp/D7ZwpOL1of/objcopyFC1UbR cat '/tmp/D7ZwpOL1of/objcopyFC1UbR' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic' chmod --reference /tmp/D7ZwpOL1of/objcopyFC1UbR debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3: Unknown DWARF DW_FORM_0x1f20 0b7f93465b4ef4f1ed598be148ef7df097a48977 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0b/7f93465b4ef4f1ed598be148ef7df097a48977.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0b/7f93465b4ef4f1ed598be148ef7df097a48977.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripJSdo9J debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 /tmp/D7ZwpOL1of/stripJSdo9J cat '/tmp/D7ZwpOL1of/stripJSdo9J' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3' chmod --reference /tmp/D7ZwpOL1of/stripJSdo9J debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0b/7f93465b4ef4f1ed598be148ef7df097a48977.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 /tmp/D7ZwpOL1of/objcopyEEDvop chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 /tmp/D7ZwpOL1of/objcopyEEDvop cat '/tmp/D7ZwpOL1of/objcopyEEDvop' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3' chmod --reference /tmp/D7ZwpOL1of/objcopyEEDvop debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy: Unknown DWARF DW_FORM_0x1f20 48dc5d3f922524d591be0a741f4fca006a62cb41 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48/dc5d3f922524d591be0a741f4fca006a62cb41.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48/dc5d3f922524d591be0a741f4fca006a62cb41.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/strip8aBAwH debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy /tmp/D7ZwpOL1of/strip8aBAwH cat '/tmp/D7ZwpOL1of/strip8aBAwH' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy' chmod --reference /tmp/D7ZwpOL1of/strip8aBAwH debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48/dc5d3f922524d591be0a741f4fca006a62cb41.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy /tmp/D7ZwpOL1of/objcopye6_GcP chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy /tmp/D7ZwpOL1of/objcopye6_GcP cat '/tmp/D7ZwpOL1of/objcopye6_GcP' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy' chmod --reference /tmp/D7ZwpOL1of/objcopye6_GcP debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3: Unknown DWARF DW_FORM_0x1f20 8cd43b91cb2b59dfebf89d503e8ec9e4474ae80b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/d43b91cb2b59dfebf89d503e8ec9e4474ae80b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/d43b91cb2b59dfebf89d503e8ec9e4474ae80b.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripafmkzx debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 /tmp/D7ZwpOL1of/stripafmkzx cat '/tmp/D7ZwpOL1of/stripafmkzx' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3' chmod --reference /tmp/D7ZwpOL1of/stripafmkzx debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/d43b91cb2b59dfebf89d503e8ec9e4474ae80b.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 /tmp/D7ZwpOL1of/objcopyKwG2mF chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 /tmp/D7ZwpOL1of/objcopyKwG2mF cat '/tmp/D7ZwpOL1of/objcopyKwG2mF' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3' chmod --reference /tmp/D7ZwpOL1of/objcopyKwG2mF debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors: Unknown DWARF DW_FORM_0x1f20 491af0e99b527e286bca15009ee37e9800d8c482 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/1af0e99b527e286bca15009ee37e9800d8c482.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/1af0e99b527e286bca15009ee37e9800d8c482.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripobo5nl debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors /tmp/D7ZwpOL1of/stripobo5nl cat '/tmp/D7ZwpOL1of/stripobo5nl' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors' chmod --reference /tmp/D7ZwpOL1of/stripobo5nl debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/1af0e99b527e286bca15009ee37e9800d8c482.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors /tmp/D7ZwpOL1of/objcopyHhgFCn chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors /tmp/D7ZwpOL1of/objcopyHhgFCn cat '/tmp/D7ZwpOL1of/objcopyHhgFCn' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors' chmod --reference /tmp/D7ZwpOL1of/objcopyHhgFCn debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4: Unknown DWARF DW_FORM_0x1f20 0026d9ac34cb762ec24e98bb03f7e825fb81672d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/26d9ac34cb762ec24e98bb03f7e825fb81672d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/26d9ac34cb762ec24e98bb03f7e825fb81672d.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripvLC2br debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 /tmp/D7ZwpOL1of/stripvLC2br cat '/tmp/D7ZwpOL1of/stripvLC2br' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4' chmod --reference /tmp/D7ZwpOL1of/stripvLC2br debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/26d9ac34cb762ec24e98bb03f7e825fb81672d.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 /tmp/D7ZwpOL1of/objcopy2T3OP6 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 /tmp/D7ZwpOL1of/objcopy2T3OP6 cat '/tmp/D7ZwpOL1of/objcopy2T3OP6' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4' chmod --reference /tmp/D7ZwpOL1of/objcopy2T3OP6 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet: Unknown DWARF DW_FORM_0x1f20 2206fd807d99b6ee9228244ab4c8c280dcc88f29 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/06fd807d99b6ee9228244ab4c8c280dcc88f29.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/06fd807d99b6ee9228244ab4c8c280dcc88f29.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripepAbDa debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet /tmp/D7ZwpOL1of/stripepAbDa cat '/tmp/D7ZwpOL1of/stripepAbDa' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet' chmod --reference /tmp/D7ZwpOL1of/stripepAbDa debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/06fd807d99b6ee9228244ab4c8c280dcc88f29.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet /tmp/D7ZwpOL1of/objcopysL5sYB chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet /tmp/D7ZwpOL1of/objcopysL5sYB cat '/tmp/D7ZwpOL1of/objcopysL5sYB' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet' chmod --reference /tmp/D7ZwpOL1of/objcopysL5sYB debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error: Unknown DWARF DW_FORM_0x1f20 9550ec51602642e65a1185fa74e0e4a205cc78b0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/50ec51602642e65a1185fa74e0e4a205cc78b0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/50ec51602642e65a1185fa74e0e4a205cc78b0.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripzkP7zT debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error /tmp/D7ZwpOL1of/stripzkP7zT cat '/tmp/D7ZwpOL1of/stripzkP7zT' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error' chmod --reference /tmp/D7ZwpOL1of/stripzkP7zT debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/50ec51602642e65a1185fa74e0e4a205cc78b0.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error /tmp/D7ZwpOL1of/objcopy4U361M chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error /tmp/D7ZwpOL1of/objcopy4U361M cat '/tmp/D7ZwpOL1of/objcopy4U361M' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error' chmod --reference /tmp/D7ZwpOL1of/objcopy4U361M debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder: Unknown DWARF DW_FORM_0x1f20 1159d8ffc71eba8e5db6cc9891e35743a69a230a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/59d8ffc71eba8e5db6cc9891e35743a69a230a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/59d8ffc71eba8e5db6cc9891e35743a69a230a.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripY5_MWJ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder /tmp/D7ZwpOL1of/stripY5_MWJ cat '/tmp/D7ZwpOL1of/stripY5_MWJ' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder' chmod --reference /tmp/D7ZwpOL1of/stripY5_MWJ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/59d8ffc71eba8e5db6cc9891e35743a69a230a.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder /tmp/D7ZwpOL1of/objcopyTZW2qS chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder /tmp/D7ZwpOL1of/objcopyTZW2qS cat '/tmp/D7ZwpOL1of/objcopyTZW2qS' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder' chmod --reference /tmp/D7ZwpOL1of/objcopyTZW2qS debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd: Unknown DWARF DW_FORM_0x1f20 176fa8d731d6c22a71a288d5bc5774ab19fb345d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/6fa8d731d6c22a71a288d5bc5774ab19fb345d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/6fa8d731d6c22a71a288d5bc5774ab19fb345d.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripG41JmJ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd /tmp/D7ZwpOL1of/stripG41JmJ cat '/tmp/D7ZwpOL1of/stripG41JmJ' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd' chmod --reference /tmp/D7ZwpOL1of/stripG41JmJ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/6fa8d731d6c22a71a288d5bc5774ab19fb345d.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd /tmp/D7ZwpOL1of/objcopyqfFuj1 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd /tmp/D7ZwpOL1of/objcopyqfFuj1 cat '/tmp/D7ZwpOL1of/objcopyqfFuj1' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd' chmod --reference /tmp/D7ZwpOL1of/objcopyqfFuj1 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens: Unknown DWARF DW_FORM_0x1f20 810d62d21e3f913ee6442c0865a42ae100ce3bad install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/0d62d21e3f913ee6442c0865a42ae100ce3bad.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/0d62d21e3f913ee6442c0865a42ae100ce3bad.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripndByL1 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens /tmp/D7ZwpOL1of/stripndByL1 cat '/tmp/D7ZwpOL1of/stripndByL1' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens' chmod --reference /tmp/D7ZwpOL1of/stripndByL1 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/0d62d21e3f913ee6442c0865a42ae100ce3bad.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens /tmp/D7ZwpOL1of/objcopyup67Vf chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens /tmp/D7ZwpOL1of/objcopyup67Vf cat '/tmp/D7ZwpOL1of/objcopyup67Vf' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens' chmod --reference /tmp/D7ZwpOL1of/objcopyup67Vf debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky: Unknown DWARF DW_FORM_0x1f20 a174cd37d8c38ea46ea9a2f2c1bf828e0f9263bf install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/74cd37d8c38ea46ea9a2f2c1bf828e0f9263bf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/74cd37d8c38ea46ea9a2f2c1bf828e0f9263bf.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripLVgQqw debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky /tmp/D7ZwpOL1of/stripLVgQqw cat '/tmp/D7ZwpOL1of/stripLVgQqw' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky' chmod --reference /tmp/D7ZwpOL1of/stripLVgQqw debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/74cd37d8c38ea46ea9a2f2c1bf828e0f9263bf.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky /tmp/D7ZwpOL1of/objcopyziS2FK chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky /tmp/D7ZwpOL1of/objcopyziS2FK cat '/tmp/D7ZwpOL1of/objcopyziS2FK' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky' chmod --reference /tmp/D7ZwpOL1of/objcopyziS2FK debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy: Unknown DWARF DW_FORM_0x1f20 b14ab10b20dda2f5fbe251c299a3fa490f585f6f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/4ab10b20dda2f5fbe251c299a3fa490f585f6f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/4ab10b20dda2f5fbe251c299a3fa490f585f6f.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/strip_3et3f debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy /tmp/D7ZwpOL1of/strip_3et3f cat '/tmp/D7ZwpOL1of/strip_3et3f' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy' chmod --reference /tmp/D7ZwpOL1of/strip_3et3f debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/4ab10b20dda2f5fbe251c299a3fa490f585f6f.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy /tmp/D7ZwpOL1of/objcopyCN2mTl chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy /tmp/D7ZwpOL1of/objcopyCN2mTl cat '/tmp/D7ZwpOL1of/objcopyCN2mTl' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy' chmod --reference /tmp/D7ZwpOL1of/objcopyCN2mTl debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation: Unknown DWARF DW_FORM_0x1f21 f6624527af8a8537e8b8bab6c59047ac01f17521 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/624527af8a8537e8b8bab6c59047ac01f17521.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/624527af8a8537e8b8bab6c59047ac01f17521.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripRUBFDI debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation /tmp/D7ZwpOL1of/stripRUBFDI cat '/tmp/D7ZwpOL1of/stripRUBFDI' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation' chmod --reference /tmp/D7ZwpOL1of/stripRUBFDI debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/624527af8a8537e8b8bab6c59047ac01f17521.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation /tmp/D7ZwpOL1of/objcopy_Jbfpo chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation /tmp/D7ZwpOL1of/objcopy_Jbfpo cat '/tmp/D7ZwpOL1of/objcopy_Jbfpo' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation' chmod --reference /tmp/D7ZwpOL1of/objcopy_Jbfpo debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position: Unknown DWARF DW_FORM_0x1f20 f4b3ff75f5c27679f10fa0e2f072fdfbfe2e8dcd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/b3ff75f5c27679f10fa0e2f072fdfbfe2e8dcd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/b3ff75f5c27679f10fa0e2f072fdfbfe2e8dcd.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/strip9u2nJh debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position /tmp/D7ZwpOL1of/strip9u2nJh cat '/tmp/D7ZwpOL1of/strip9u2nJh' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position' chmod --reference /tmp/D7ZwpOL1of/strip9u2nJh debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/b3ff75f5c27679f10fa0e2f072fdfbfe2e8dcd.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position /tmp/D7ZwpOL1of/objcopy4YkhoY chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position /tmp/D7ZwpOL1of/objcopy4YkhoY cat '/tmp/D7ZwpOL1of/objcopy4YkhoY' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position' chmod --reference /tmp/D7ZwpOL1of/objcopy4YkhoY debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens: Unknown DWARF DW_FORM_0x1f21 5249d0b7f08d12a7d777003530fafe3c4a2e2b0f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/49d0b7f08d12a7d777003530fafe3c4a2e2b0f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/49d0b7f08d12a7d777003530fafe3c4a2e2b0f.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripBSsRDc debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens /tmp/D7ZwpOL1of/stripBSsRDc cat '/tmp/D7ZwpOL1of/stripBSsRDc' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens' chmod --reference /tmp/D7ZwpOL1of/stripBSsRDc debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/49d0b7f08d12a7d777003530fafe3c4a2e2b0f.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens /tmp/D7ZwpOL1of/objcopyWE1okb chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens /tmp/D7ZwpOL1of/objcopyWE1okb cat '/tmp/D7ZwpOL1of/objcopyWE1okb' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens' chmod --reference /tmp/D7ZwpOL1of/objcopyWE1okb debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build3 debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem: Unknown DWARF DW_FORM_0x1f20 ffb6f9ee0f5859be75a934fd8c71fc426e20ccb5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/b6f9ee0f5859be75a934fd8c71fc426e20ccb5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/b6f9ee0f5859be75a934fd8c71fc426e20ccb5.debug strip --remove-section=.comment --remove-section=.note -o /tmp/D7ZwpOL1of/stripkwECjj debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem /tmp/D7ZwpOL1of/stripkwECjj cat '/tmp/D7ZwpOL1of/stripkwECjj' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem' chmod --reference /tmp/D7ZwpOL1of/stripkwECjj debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/b6f9ee0f5859be75a934fd8c71fc426e20ccb5.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem /tmp/D7ZwpOL1of/objcopynhKgdQ chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem /tmp/D7ZwpOL1of/objcopynhKgdQ cat '/tmp/D7ZwpOL1of/objcopynhKgdQ' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem' chmod --reference /tmp/D7ZwpOL1of/objcopynhKgdQ debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cctbx/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cctbx/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cctbx/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc ln -s python3-cctbx debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc/python3-cctbx-dbgsym install -m0755 -d debian/.debhelper/python3-cctbx dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libcctbx0/DEBIAN/shlibs install -m0755 -d debian/libcctbx0/DEBIAN echo "libann_adaptor 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libasymmetric_map 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcbf-private 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libccp4io 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx_sgtbx_asu 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libdxtbxspotfinder 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_mtz 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_pdb 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_xplor 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_masks 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_tls 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libomptbx 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "librstbx 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_boost_python 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_minpack 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_slatec 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libsmtbx_refinement_constraints 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libspotfinder 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs chmod 0644 -- debian/libcctbx0/DEBIAN/shlibs mv debian/.debhelper/generated/libcctbx0/triggers.new debian/.debhelper/generated/libcctbx0/triggers rm -f debian/libcctbx-dev/DEBIAN/shlibs rm -f debian/python3-cctbx/DEBIAN/shlibs install -m0755 -d debian/python3-cctbx/DEBIAN echo "annlib_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_boost_thread_test_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_breadth_first_search_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_clustering_algorithm_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_connected_component_algorithm_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_graph_structure_comparison_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_maximum_clique_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_metric_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_min_cut_max_flow_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_utility_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_python_streambuf_test_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_optional_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_python_hybrid_times_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_python_meta_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_rational_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_tuple_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cbflib_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "ccp4io_adaptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_adp_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_adptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_anharmonic_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_asymmetric_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_covariance_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_crystal_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_dmtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_attenuation_coefficient_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_chemical_elements_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_covalent_radii_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_fp_fdp_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_henke_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_icsd_radii_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_neutron_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_sasaki_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_tiny_pse_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_wavelengths_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_xray_scattering_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_emma_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_french_wilson_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_geometry_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_geometry_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_maptbx_bcr_bcr_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_maptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_masks_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_math_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_merging_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_miller_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_multipolar_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_orientation_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_sgtbx_asu_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_sgtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_statistics_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_symmetry_search_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_translation_search_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_uctbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_xray_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_xray_observations_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cma_es_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "determine_unit_cell_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_flumpy 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_format_image_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_format_nexus_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_imageset_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_masking_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_model_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "fable_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_fonts_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_gl_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_glu_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_quadrics_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_util_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_viewer_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_ccp4_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_cif_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_detectors_bruker_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_detectors_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_dsn6_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_dtrek_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_mtz_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_pdb_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_pdb_hierarchy_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_scalepack_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_shelx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_wildcard_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_xplor_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_alignment_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_building_loop_closure_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_bulk_solvent_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_cablam_align_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_den_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_dssp_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_dynamics_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_f_model_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_asa_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_clash_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_indexing_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_primitive_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_shared_types_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_sphere_surface_sampling_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_hydrogens_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_masks_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_max_lik_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_mosaic_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_ncs_cartesian_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_ncs_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_pair_interaction_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_probe_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_ramachandran_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_reduce_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_reference_coordinate_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_rotamer_fit_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_rsr_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_scaling_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_secondary_structure_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_decompose_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_optimise_amplitudes_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_validation_ramachandran_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "omptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "regression_test_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_bandpass_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_bpcx_detector_model_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_diffraction_fastbragg_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_indexing_api_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_integration_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_simage_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_simulation_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_symmetry_constraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_array_family_shared_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_cubicle_neighbors_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_fftpack_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_glmtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_graphics_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_iso_surface_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_lbfgs_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_lbfgsb_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_linalg_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_lstbx_normal_equations_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_math_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_minpack_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_r3_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_random_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_rigid_body_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_sparse_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_stl_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_stl_set_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_stl_vector_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_suffixtree_shared_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_suffixtree_single_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_wigner_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_ab_initio_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_array_family_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_refinement_constraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_refinement_least_squares_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_refinement_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_stl_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_structure_factors_direct_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_distltbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_dxtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_hough_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "std_pair_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs chmod 0644 -- debian/python3-cctbx/DEBIAN/shlibs mv debian/.debhelper/generated/python3-cctbx/triggers.new debian/.debhelper/generated/python3-cctbx/triggers dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN dpkg-shlibdeps -Tdebian/libcctbx0.substvars debian/libcctbx0/usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged install -m0755 -d debian/python3-cctbx/DEBIAN dpkg-shlibdeps -Tdebian/python3-cctbx.substvars debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_ValueError: it's probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it's probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it's probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PySlice_Type: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyException_SetContext: it's probably a plugin dpkg-shlibdeps: warning: 124 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it's probably a plugin dpkg-shlibdeps: warning: 33 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 49 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyDict_Type: it's probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it's probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PySlice_Type: it's probably a plugin dpkg-shlibdeps: warning: 31 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Hash: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Append: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it's probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsTrue: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyImport_AddModule: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it's probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_FromDoubles: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_Type: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_New: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -p -m0644 debian/.debhelper/generated/libcctbx0/triggers debian/libcctbx0/DEBIAN/triggers install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/postinst cat debian/python3-cctbx.postinst.debhelper >> debian/python3-cctbx/DEBIAN/postinst chmod 0755 -- debian/python3-cctbx/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/prerm cat debian/python3-cctbx.prerm.debhelper >> debian/python3-cctbx/DEBIAN/prerm chmod 0755 -- debian/python3-cctbx/DEBIAN/prerm install -p -m0644 debian/.debhelper/generated/python3-cctbx/triggers debian/python3-cctbx/DEBIAN/triggers dh_numpy3 -a -O--buildsystem=pybuild mv debian/libcctbx0.substvars.new debian/libcctbx0.substvars mv debian/libcctbx-dev.substvars.new debian/libcctbx-dev.substvars mv debian/python3-cctbx.substvars.new debian/python3-cctbx.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx-dev/DEBIAN echo misc:Depends= >> debian/libcctbx-dev.substvars echo misc:Pre-Depends= >> debian/libcctbx-dev.substvars dpkg-gencontrol -plibcctbx-dev -ldebian/changelog -Tdebian/libcctbx-dev.substvars -Pdebian/libcctbx-dev install -m0755 -d debian/libcctbx0/DEBIAN echo misc:Depends= >> debian/libcctbx0.substvars echo misc:Pre-Depends= >> debian/libcctbx0.substvars install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -Pdebian/.debhelper/libcctbx0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcctbx0-dbgsym "-DDepends=libcctbx0 (= \${binary:Version})" "-DDescription=debug symbols for libcctbx0" "-DBuild-Ids=06641e0822a2881c2da6c729c99a6eae4c1d07a3 1646facccfd6c627014b4d3ce14545e61127b0c7 1bfe2adc3088ba7eadbad1f235e2504caa6abdee 23f0bb0de18c3f0a05d90e39f9a233da65bf69ac 2cf5ad6df007b553f4c133c32fe41084e508c461 51ce67404e327b03524f87db866c7c7c1b49b186 64766aa80fa92e85c72456df3f3693eb60857648 67fd14920f09897c00964c6fa84d3e2e8957943e 86dace2f023c1509fdc774876c39ea12c5de8f04 8c10fb1ee2cae2544ed94ffc5e53d8bb28dd6de1 9955d44238b39af25aec890f6ee5bbe39ae354ee bb259d5fd06c3317c848e9e7af9e3a3ffeb5402a bd5b08608e5928b0ebd19a85bb38703689b0ce5b bf884647a2b700e8f78bb7e24044b6eb0ee68ba5 c672673dcf5b8d60ab6fdd103f00ff47739595ab cd8d418f8c4b3a7d7e3da2f4242439da01056c39 ee88d5811c547484c1aae06f78295b5b812d0dd0 f954eacf051907f91194d9e73be6992fafe86a7d fe291feadcbebdb77b04a664b94d3bf09ef427aa" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python3-cctbx/DEBIAN echo misc:Depends= >> debian/python3-cctbx.substvars echo misc:Pre-Depends= >> debian/python3-cctbx.substvars install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -Pdebian/.debhelper/python3-cctbx/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cctbx-dbgsym "-DDepends=python3-cctbx (= \${binary:Version})" "-DDescription=debug symbols for python3-cctbx" "-DBuild-Ids=0026d9ac34cb762ec24e98bb03f7e825fb81672d 02d7578b160fc270e7123a211c55fdf4e908efdf 058dcc821507bd46a23219e83151eca00a0ab2b7 059d010f6f7f0ef00e7694248789ae0eb5de3db5 06e3b9d87e2958f4bbb8930cc3120c29e23a7d03 0ac287ae49836ad0a8bd237edc6d1c8b58a954be 0b7f93465b4ef4f1ed598be148ef7df097a48977 0d3927808789c823bc2af5e40efaba4d2e1dffd3 0e9e9727376438a3638db6f6312a5e90eec915d6 0f50e787a6f9ecc08c6f4d81721dd384472b9b32 11541fc3857d3f8a5fa19c734bb2a533c9ecd404 1159d8ffc71eba8e5db6cc9891e35743a69a230a 15a50e01c89900a1c6689cf7bf8bdd0e5ba3411e 16151e019ac97f60c967ff70dbcf18e90e1b636e 176fa8d731d6c22a71a288d5bc5774ab19fb345d 17c7a8273aaddcdd19fb085592ee098260d8c610 1809dc50097e63493cdcf45ef324a7b06f0bc111 1a65e0e4463788f0cbb24f9e5641a5b54e7c011b 1a9d708936d0d7a7c21e69c006a6007aa25ab24b 1c897ea86789e1e3bcd47390e022e982a6b1195c 1d220fbdfc4fa904fd4f458a9860a4ef0dd4a17f 1deb0cd98f5fa1bd08b46491c61e6f59625f71b9 1e606136c8564d73b6ad9c237bfaf81b958e9b7a 1eb1fda7f5341e8e8747898ed534cff7ae78400c 1f420c5886ae7872502850cc3255ae55af0144d7 1ff13cf7b4f9b6befd6b7fdc65d2d6a4134a32df 2053f9de8d53188d5546456de5994a4832c087b2 2206fd807d99b6ee9228244ab4c8c280dcc88f29 2315f2792c955520e496ba5f9804c70a54c51ebf 23498eeade39773a65798c096347e63ff0482ede 23b5ce1185796778eba3f15e3015faf2476fe5eb 242b039068e08d79e1df15bdfea5f407533db5d5 264c3da08feda53b81e5abd1e87f6a2a7e1d6998 26623a2b0882a71cb9e6645f766a404303e4d2ca 272a49e0766a92ef6a074d9bfd00e6d49f249c5d 280237b8fc32cb84a4e5c546bedd6ad596fe9faa 2a028da12399c1b2711f83baad2eb33820b879b3 2c22b182bd3a19d387a83574423273baa2219e26 2c9ee6a9a8c54292e385046ab4d08e70533f1b82 2db59a76e62fa5c3cf83806c0cc6da1a0f03c507 2f900cab99d4f447c8922dbe67a54092c67b5489 321db17a0aaab72a040f09d6fde92cbbb65e004a 33341782a8b0bc054617f63a6a618dc103cce0aa 36c7b7b91bf48a723ddf4ca8587c1d77017abe6a 39f9fd7639868208574de4fcb42c35ff4a8eb4e3 3a45c855c8bfdaf5958d53b861294ab4fe86c438 3b72c605ff140bf1d579dd452cf8ee5585847a00 3c0d5b99f1b02eea7d1eacd23ba1016d7f87978f 3d28635fd624fb44269cd0bd5bd8c3d090ec1afc 3d8de376b3e8b6324047ec46b4de3d00cc09556c 3df29f9a64ad8eb01552f07d6e3592ac8a0aaa64 3e9dd9b59f885ce2fae58e7ece651f1a6361147d 40ad4141e36ee0ea9bddc93eb1cff26e5660cf61 44aacbff68e5ea6991ed895487deb75a7e30f3ca 451934b66b8e4e57465c4f1405dd1fd10fbafe13 47c6cf2d1256766984267b8392d330558ff7da8b 48dc5d3f922524d591be0a741f4fca006a62cb41 4900601bdb27b6a0ff90897be43ee4b85e1d3532 491af0e99b527e286bca15009ee37e9800d8c482 4ab73d0e307183f67975c16dcc7467118fde7b99 4e7752d74a5c70436e34ce630512f12c813f9d70 513fbeb557f4578fb98eb1f9cb590b6ad183e559 5249d0b7f08d12a7d777003530fafe3c4a2e2b0f 52bf858228f5fd70401e555013ba6602c7f91a27 5420944454ee1d6f79ed8f25ba765bc8121349cd 557ec4928678153ae2e128692c069c8b6a1b76d1 56225d61147c1702128d6e715bbd6e115d48a160 57a1c2c46c9fdf9c030989b36d0c54f351574bdb 58d78c687f99dc665664c45c438203de02e356d6 593f55b53663b5ce8789dd85f70491465ed054ae 5a491b43099a3e62e5468c9209ba24a9fcadc54e 5a9a6a16d505a0d01a6692fc6b1ffadca94da099 5ab2a69ccb691e71ccb796492ae74f55de3dcbb8 5b5c83c85ca56a86ba0d7aeef066404c6a19be28 5cc06e9e30049258c857a3723d82278af0ed219e 5d1eae4ee14846edd658552b1554a3c2923d4710 5d5f6b354f1b98a44599420ef8ef16b434cfd3a4 5d6ab38d4eb6da6ec168aad4d31f7a92e3e1561f 5dfea032bd67a1147ae9faad15d245e285e71b07 5e9007be1fc4123d883dad9dfd0a20896954dc54 609a4fc04fcbde9f124a1475718e720ba0bc8c06 609c43e69f9c5950a80253ace249a02d9da003a1 618d8ea392dce690651f0be87abf036c114a0e80 66ab90b5043e264cf24f6133e67b0c5b9dd10354 66d5a7946dd6c8ee0057139bd5205e68f4367a20 66e02082c053d923e8180f5e3e21bcbec69e34fd 67d1e3771fbdebb3f946344887a3a321c9776eed 69e97148112b7eb33a88c5ccca056c4a0ce5e8be 6b6497b53adc715559bd0861da15642b68fe9e89 6d39ef2516b9964658ce10694aef4783c55a7e08 6da54eaaca7c7bb51acad7e0e92f98801e672a40 6e03c62c1ce9d635a35df3c6eb38ac17dc90a0f3 6fd7384a9ed4277a272512077c7ba468495b6151 6ff5c4536f2f03ae7a80df959d727597c368d816 729455d3fb5716fae4e7e7915e03d52073037c53 72de343016febbd4c73afdde236d711f72bbd153 76962b73a3a107f91f7cd0a9fb0e28e2412807b5 7756f5b8d7f610970d94d863d058bc900c5da887 793bc59115a02b252503e7893742dc74dca4c64c 7a338d3aef00bc448d51d6e43614168a16697bc8 803d0510414ce5f118da579c5487756d09ec7401 80713518e1030e40d569be0c7cd6b0d0b91b8383 80c1af3e511b1afc62a8ad54532197d57dc63bd7 810d62d21e3f913ee6442c0865a42ae100ce3bad 818648d7aa7b8bf8a7b76f1cf9b33e6eef89eae5 819e076f3ac9907e61d21e7d7246a4b1e7a2f6be 8205f883786699a5c36621d6cc9117b65ca21e15 83a71218eadd46beffd610854f1135fe10edc2ef 83d69136c569fe82f80013300b58055d9efa30d4 848934b0b4974cdeae1971f34619fd610418733a 85882f141cb353f1c21503cc9eb346df9942ab7c 859d79cdaf9e6c637daaa2ae3bcfd19639185180 863dc940c2664df6e5f89bf72ebb38ba0b815fde 874f159803aca78e447db3dde7279d2af45bd4a1 89452bdbf4aa4884c39f9a9409e2c94fd3e74adf 8ad7b874d2c19aed3899fd1f17f06f98ec1a6146 8b64b952fd15dae9bb7a5702a7f9b1a8fb2713de 8cc078271285bf125f945e98f181a81441cd7024 8cd43b91cb2b59dfebf89d503e8ec9e4474ae80b 8d9259b4e7c60455c494a1c8472b792b9f104aba 8e266b1b36133bb1aedbb68442c554ba2158d5d5 8fa093df4d3c5b1d61ba77b3d10f4fbcfd6824e8 90b8828a339557e8eb125a3ebc99e822039bc445 91dff6bdcb2a39108d5778f9f0e49727bc7e0fcd 930c0c48795141df73e3de051495531abee21a21 93ea4eac3a2df446e906146aa6f6dfd44676037b 93f9b8c6f8090907e307e59b5d23592532e57320 94eea03382e288345f8764194df7a805f4b7485d 9502e8084a761f8c758ecf2f4a6e11d06ecbd28f 9550ec51602642e65a1185fa74e0e4a205cc78b0 98685702074165ebe6638f24b2e5cf9eb92ff837 9a89f646a90212fa7fa40b6d1f524dc852a1f08e 9a9103964ba9a0bbad9ccd2b8151acd99940518c 9b7f9c03db18905cfa7bcd42505792b4a6e5967f 9c1f76e2825d94b9e7d886c430edab44e38b9660 9c6726231c15a74e9275719d51db0eac529f305a 9d09a857c321d7d4f5222fffeeda294b86d7346d 9e4f7342cc83d888fe3f6a55aa06cf4b343cf05c 9ed960862358fb23b2650c8f25e1bd47a0871807 a0178fad1140806066b84e3e7f48c29e26d4dc56 a10336211d0fc69dac0bad87b6789842307aae11 a174cd37d8c38ea46ea9a2f2c1bf828e0f9263bf a34ac21fa7bbe5dcf94ddc2c62b79ad516bb60fd a96f5d98bfd778ee3cd6acb3466ba1a650383439 ab1970f7207ff019f6537b578284388228b4c0dd ab9a1e536890419f5926af18c366c7defe5d2131 abfef944df694a5a22582b0cd026b96f8d56d5b2 ac7069b3aa0c8c177e0876bfb60727d844361738 afbd1d760c31eb6a691194892d57f65e31a44afe b0f4358e42265996bb0bf0710729c67b75303e81 b14ab10b20dda2f5fbe251c299a3fa490f585f6f b1b45b6bd0a5c96347019f265499f711f2861b43 b28f870edc3f4de17be6018395d4ea565b856c3a b3310704403069245ba82955d2d8b5be73e0de1c b46625bb6e139c99dac6b670e278c2829e60ab44 b5e748e72d728a2f455d768fdc0da6da09508c62 b6c4f22ef8f33daaf5375c5793c07f4825d90486 b7e0505767cebd7eb9f1ea72b2c10d2f4af8669b b8c8a3b1e6f5f4306944e1279c20ed7b8931d152 bbf85aaa188dc27254125fdea5fb153d6a344096 bdb01bbdf19684f16c592a97f2bc27bb49c6d4e2 beff31ba9f99a79522b9765bd3b7239c9534ebf3 bfb9fb1d0dd872883b39a5b07b6b72d4a5b85c02 c04708e05029af56bf54b902becf098dc108247d c3bd17dbbfd186005c079f00a083eb285b974cd1 c61d06aa863ad2fc6b5908b227a962fd1534cc3f c670870bdd424692aee93546329a61b386ef1e6b c8110e6663af90d7cde5f7986a52b95d777d6c33 c931857b412c0b2a08a9a852f302941a29f016b2 cb084076792dec35bcd4f4d7ef724fcd04079c68 d19698324af2171eb1b9a8186abf0da220514f0d d5dac38c3de23dd4972c7796210185ecb4cef462 d6af656f0d2e9fb8ebb62e3b7e2f92dd32efec32 d6d7263a4b95200e6ad873937bc220843b6cc2c3 d6d80664ae8b44cd31915f9fe89b3e408eb9c667 d7fb10593ee281f6f8ad1451697c14e4eb2b61bf d8aa162d2d3d01a0e21fd7608099bcf67dc0e9e2 dabcd62902f3193f168efe8169dcd932139f6cea dd1065810847c7c6fed98965562dca0dfebb0e06 dee1a0d3811e418c123f8ede0e7598067eb5c813 df5fbc8f2f01dc823e0eb0c7be62d880e6a86194 e3bdaf95d53f104d07f51015bf096a3badba0442 e492950e8e583c69dd2b96fa68267b73b3cbc5fb e73c4d16f13898ec6ea95ca03bce2f5cffd8bdd1 e8f23a6521244d5cfe91bdf69e37011538dc1648 eac217bfb0818adc02f32fe6e60c85a1393328b4 eb0e7837819754e4ff6d5f9f1b9d3813bf6193fc ebbfe5756063a8441ecaea27f39864535117d73e ec17a3c19d1889353321ef20d90fa8de25cb558e ec8ee011249547478f9f1c32477e2926c47c1148 ed2b3bbc516eee5314087905418410f4b769ff13 ef537c101faf45d2108db22e963f497c1407a97d f014d984ec550c9f4631bdbdb47b48b794c4a243 f11537bf404a264e13bdda203625ca32acb05296 f2cdbbdb7dbdecedcb2bdf8c3290a55edf043288 f4b3ff75f5c27679f10fa0e2f072fdfbfe2e8dcd f4eaca2004b6710131189a6f885e19149c025905 f53e4902bcda163038292eae7973b4655341c173 f59023f99a0de47fbd6c5dd76a97a862e0adb650 f6624527af8a8537e8b8bab6c59047ac01f17521 f78fdae0e27c8c2e7cb7a0713d3a69dea8fb4ad1 f8ef0aac1ea22509cd7dbafcb899b539e00fe36e ffb6f9ee0f5859be75a934fd8c71fc426e20ccb5" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package libcctbx0: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -Pdebian/libcctbx0 dpkg-gencontrol: warning: package libcctbx-dev: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/libcctbx-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -Pdebian/python3-cctbx dpkg-gencontrol: warning: package libcctbx0: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/libcctbx0/DEBIAN/control chmod 0644 -- debian/python3-cctbx/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/DEBIAN install -m0755 -d debian/libcctbx0/DEBIAN install -m0755 -d debian/libcctbx-dev/DEBIAN cd debian/libcctbx0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcctbx-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx0/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN cd debian/python3-cctbx >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/libcctbx0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python3-cctbx/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cctbx/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libcctbx0 .. dpkg-deb --root-owner-group --build debian/libcctbx-dev .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cctbx/dbgsym-root debian/.debhelper/scratch-space/build-python3-cctbx INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libcctbx-dev (in debian/libcctbx-dev); do_strip: , oemstrip: pkgstriptranslations: processing libcctbx0 (in debian/libcctbx0); do_strip: , oemstrip: pkgstriptranslations: processing python3-cctbx-dbgsym (in debian/.debhelper/python3-cctbx/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libcctbx-dev/DEBIAN/control, package libcctbx-dev, directory debian/libcctbx-dev INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... pkgstripfiles: processing control file: debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control, package python3-cctbx-dbgsym, directory debian/.debhelper/python3-cctbx/dbgsym-root dpkg-deb: building package 'python3-cctbx-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-cctbx/python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb'. INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... pkgstripfiles: processing control file: debian/libcctbx0/DEBIAN/control, package libcctbx0, directory debian/libcctbx0 pkgstripfiles: Truncating usr/share/doc/libcctbx0/changelog.Debian.gz to topmost ten records INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcctbx0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb'. Searching for duplicated docs in dependency libcctbx0... symlinking changelog.Debian.gz in libcctbx-dev to file in libcctbx0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcctbx-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libcctbx0/dbgsym-root debian/.debhelper/scratch-space/build-libcctbx0 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libcctbx0-dbgsym (in debian/.debhelper/libcctbx0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control, package libcctbx0-dbgsym, directory debian/.debhelper/libcctbx0/dbgsym-root dpkg-deb: building package 'libcctbx0-dbgsym' in 'debian/.debhelper/scratch-space/build-libcctbx0/libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb'. dpkg-deb --root-owner-group --build debian/python3-cctbx .. INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-cctbx (in debian/python3-cctbx); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python3-cctbx/DEBIAN/control, package python3-cctbx, directory debian/python3-cctbx Searching for duplicated docs in dependency libcctbx-dev... symlinking changelog.Debian.gz in python3-cctbx to file in libcctbx0 Searching for duplicated docs in dependency libcctbx0... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-cctbx ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value WARNING: optipng failed on usr/bin/labelit.png, ignoring Invalid PNG signature on usr/bin/labelit.png [at void throw_png_error():pngex.h:37] WARNING: advpng failed on usr/bin/labelit.png, ignoring . pkgstripfiles: PNG optimization (0/0) for package python3-cctbx took 1 s dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb'. Renaming libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb to libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.ddeb mv debian/.debhelper/scratch-space/build-libcctbx0/libcctbx0-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build3_arm64.deb ../libcctbx0-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build3_arm64.ddeb Renaming python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb to python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.ddeb mv debian/.debhelper/scratch-space/build-python3-cctbx/python3-cctbx-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build3_arm64.deb ../python3-cctbx-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build3_arm64.ddeb dpkg-genbuildinfo --build=any -O../cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-22T18:56:44Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.changes: ---------------------------------------------------- Format: 1.8 Date: Mon, 22 Apr 2024 15:31:36 +0000 Source: cctbx Binary: libcctbx-dev libcctbx0 python3-cctbx Built-For-Profiles: noudeb Architecture: arm64 Version: 2023.12+ds2+~3.17.0+ds1-4build3 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: libcctbx-dev - Computational Crystallography Toolbox - headers libcctbx0 - Computational Crystallography Toolbox - runtime libraries python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2023.12+ds2+~3.17.0+ds1-4build3) noble; urgency=medium . * No-change rebuild against libccp4c0t64 Checksums-Sha1: f3112ac3760cab23cb8e953c7e0f0962dd5c92a4 22773 cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.buildinfo 494b1ecc56cc06c4e03425a2d7a39b3532307493 1191356 libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb ea825750ebeaf95704b341797c2b70d6762eccb7 8533986 libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.ddeb ea0474f847233171c1479ce1f900599bb516df8d 2012238 libcctbx0_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb adf890ddce71ede4693925073dc05ef8403d1c1c 116344794 python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build3_arm64.ddeb c41cb3680140bd21edc2536234ceedd3d08ec344 26878664 python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb Checksums-Sha256: acc13d64b582c25f446ad57300f2e7e07353397f39198bd61bea28d79183df3a 22773 cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.buildinfo 7632b939fc20d41df9a7e2fab4765cda37fc4e78e6d5a28db67150646da77843 1191356 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1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu2), autotools-dev (= 20220109.1), base-files (= 13ubuntu10), base-passwd (= 3.6.3build1), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-aarch64-linux-gnu (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), blt (= 2.5.3+dfsg-7build1), bsdextrautils (= 2.39.3-9ubuntu6), bsdutils (= 1:2.39.3-9ubuntu6), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3ubuntu6), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu4), cpp-13-aarch64-linux-gnu (= 13.2.0-23ubuntu4), cpp-aarch64-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), dbus (= 1.14.10-4ubuntu4), dbus-bin (= 1.14.10-4ubuntu4), dbus-daemon (= 1.14.10-4ubuntu4), dbus-session-bus-common (= 1.14.10-4ubuntu4), dbus-system-bus-common (= 1.14.10-4ubuntu4), dbus-user-session (= 1.14.10-4ubuntu4), dconf-gsettings-backend (= 0.40.0-4build2), dconf-service (= 0.40.0-4build2), debconf (= 1.5.86ubuntu1), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build2), dh-autoreconf (= 20), dh-exec (= 0.29build1), dh-python (= 6.20240401), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1build1), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), fftw-dev (= 2.1.5-6build2), fftw2 (= 2.1.5-6build2), file (= 1:5.45-3build1), findutils (= 4.9.0-5build1), fontconfig (= 2.15.0-1.1ubuntu2), fontconfig-config (= 2.15.0-1.1ubuntu2), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-lato (= 2.015-1), fonts-lyx (= 2.4.0~RC3-1build4), fonts-urw-base35 (= 20200910-8), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu4), g++-13-aarch64-linux-gnu (= 13.2.0-23ubuntu4), g++-aarch64-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu4), gcc-13-aarch64-linux-gnu (= 13.2.0-23ubuntu4), gcc-13-base (= 13.2.0-23ubuntu4), gcc-14-base (= 14-20240412-0ubuntu1), gcc-aarch64-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu2), gettext-base (= 0.21-14ubuntu2), grep (= 3.11-4build1), groff-base (= 1.23.0-3build2), gtk-update-icon-cache (= 3.24.41-4ubuntu1), gzip (= 1.12-1ubuntu3), hdf5-helpers (= 1.10.10+repack-3.1ubuntu4), hicolor-icon-theme (= 0.17-2), hostname (= 3.23+nmu2ubuntu2), humanity-icon-theme (= 0.6.16), ibverbs-providers (= 50.0-2build2), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), jq (= 1.7.1-3build1), libacl1 (= 2.3.2-1build1), libaec-dev (= 1.1.2-1build1), libaec0 (= 1.1.2-1build1), libann-cctbx-dev (= 1.1.2+doc-9build1), libann-cctbx0 (= 1.1.2+doc-9build1), libantlr3c-3.4-0 (= 3.4+dfsg-4build2), libantlr3c-dev (= 3.4+dfsg-4build2), libapparmor1 (= 4.0.0-beta3-0ubuntu3), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20190702+dfsg-4build1), libasan8 (= 14-20240412-0ubuntu1), libatk-bridge2.0-0t64 (= 2.52.0-1build1), libatk1.0-0t64 (= 2.52.0-1build1), libatomic1 (= 14-20240412-0ubuntu1), libatspi2.0-0t64 (= 2.52.0-1build1), libattr1 (= 1:2.5.2-1build1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libavahi-client3 (= 0.8-13ubuntu6), libavahi-common-data (= 0.8-13ubuntu6), libavahi-common3 (= 0.8-13ubuntu6), libbinutils (= 2.42-4ubuntu2), libblas3 (= 3.12.0-3build1), libblkid1 (= 2.39.3-9ubuntu6), libboost-atomic1.83-dev (= 1.83.0-2.1ubuntu3), libboost-atomic1.83.0 (= 1.83.0-2.1ubuntu3), libboost-chrono1.83-dev (= 1.83.0-2.1ubuntu3), libboost-chrono1.83.0t64 (= 1.83.0-2.1ubuntu3), libboost-date-time1.83-dev (= 1.83.0-2.1ubuntu3), libboost-date-time1.83.0 (= 1.83.0-2.1ubuntu3), libboost-dev (= 1.83.0.1ubuntu2), libboost-numpy-dev (= 1.83.0.1ubuntu2), libboost-numpy1.83-dev (= 1.83.0-2.1ubuntu3), libboost-numpy1.83.0 (= 1.83.0-2.1ubuntu3), libboost-python-dev (= 1.83.0.1ubuntu2), libboost-python1.83-dev (= 1.83.0-2.1ubuntu3), libboost-python1.83.0 (= 1.83.0-2.1ubuntu3), libboost-serialization1.83-dev (= 1.83.0-2.1ubuntu3), libboost-serialization1.83.0 (= 1.83.0-2.1ubuntu3), libboost-system1.83-dev (= 1.83.0-2.1ubuntu3), libboost-system1.83.0 (= 1.83.0-2.1ubuntu3), libboost-thread-dev (= 1.83.0.1ubuntu2), libboost-thread1.83-dev (= 1.83.0-2.1ubuntu3), libboost-thread1.83.0 (= 1.83.0-2.1ubuntu3), libboost1.83-dev (= 1.83.0-2.1ubuntu3), libbrotli1 (= 1.1.0-2build2), libbsd0 (= 0.12.1-1build1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcairo-gobject2 (= 1.18.0-3build1), libcairo2 (= 1.18.0-3build1), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu2), libcbf-dev (= 0.9.7+dfsg1-3.1build2), libcbf1t64 (= 0.9.7+dfsg1-3.1build2), libcc1-0 (= 14-20240412-0ubuntu1), libccp4-data (= 8.0.0-2ubuntu1), libccp4-dev (= 8.0.0-2ubuntu1), libccp4c0t64 (= 8.0.0-2ubuntu1), libccp4f0 (= 8.0.0-2ubuntu1), libclipper-dev (= 2.1.20201109-2build1), libclipper2 (= 2.1.20201109-2build1), libcolord2 (= 1.4.7-1build2), libcom-err2 (= 1.47.0-2.4~exp1ubuntu4), libcrypt-dev (= 1:4.4.36-4build1), libcrypt1 (= 1:4.4.36-4build1), libcryptsetup12 (= 2:2.7.0-1ubuntu4), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libcups2t64 (= 2.4.7-1.2ubuntu7), libcurl3t64-gnutls (= 8.5.0-2ubuntu10), libcurl4-openssl-dev (= 8.5.0-2ubuntu10), libcurl4t64 (= 8.5.0-2ubuntu10), libdatrie1 (= 0.2.13-3build1), libdb5.3t64 (= 5.3.28+dfsg2-7), libdbus-1-3 (= 1.14.10-4ubuntu4), libdconf1 (= 0.40.0-4build2), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate-dev (= 1.19-1build1), libdeflate0 (= 1.19-1build1), libdevmapper1.02.1 (= 2:1.02.185-3ubuntu3), libdouble-conversion3 (= 3.3.0-1build1), libdpkg-perl (= 1.22.6ubuntu6), libdrm-amdgpu1 (= 2.4.120-2build1), libdrm-common (= 2.4.120-2build1), libdrm-nouveau2 (= 2.4.120-2build1), libdrm-radeon1 (= 2.4.120-2build1), libdrm2 (= 2.4.120-2build1), libdw1t64 (= 0.190-1.1build4), libedit2 (= 3.1-20230828-1build1), libegl-mesa0 (= 24.0.5-1ubuntu1), libegl1 (= 1.7.0-1build1), libeigen3-dev (= 3.4.0-4), libelf1t64 (= 0.190-1.1build4), libepoxy0 (= 1.5.10-1build1), libevdev2 (= 1.13.1+dfsg-1build1), libevent-core-2.1-7t64 (= 2.1.12-stable-9ubuntu2), libevent-pthreads-2.1-7t64 (= 2.1.12-stable-9ubuntu2), libexpat1 (= 2.6.1-2build1), libexpat1-dev (= 2.6.1-2build1), libfabric1 (= 1.17.0-3build2), libfdisk1 (= 2.39.3-9ubuntu6), libffi8 (= 3.4.6-1build1), libfftw3-bin (= 3.3.10-1ubuntu3), libfftw3-dev (= 3.3.10-1ubuntu3), libfftw3-double3 (= 3.3.10-1ubuntu3), libfftw3-long3 (= 3.3.10-1ubuntu3), libfftw3-single3 (= 3.3.10-1ubuntu3), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.15.0-1.1ubuntu2), libfontenc1 (= 1:1.1.8-1build1), libfreetype6 (= 2.13.2+dfsg-1build3), libfribidi0 (= 1.0.13-3build1), libgbm1 (= 24.0.5-1ubuntu1), libgcc-13-dev (= 13.2.0-23ubuntu4), libgcc-s1 (= 14-20240412-0ubuntu1), libgcrypt20 (= 1.10.3-2build1), libgdbm-compat4t64 (= 1.23-5.1build1), libgdbm6t64 (= 1.23-5.1build1), libgdk-pixbuf-2.0-0 (= 2.42.10+dfsg-3ubuntu3), libgdk-pixbuf2.0-common (= 2.42.10+dfsg-3ubuntu3), libgfortran5 (= 14-20240412-0ubuntu1), libgl-dev (= 1.7.0-1build1), libgl1 (= 1.7.0-1build1), libgl1-mesa-dri (= 24.0.5-1ubuntu1), libglapi-mesa (= 24.0.5-1ubuntu1), libglew2.2 (= 2.2.0-4build1), libglib2.0-0t64 (= 2.80.0-6ubuntu1), libglu1-mesa (= 9.0.2-1.1build1), libglu1-mesa-dev (= 9.0.2-1.1build1), libglvnd0 (= 1.7.0-1build1), libglx-dev (= 1.7.0-1build1), libglx-mesa0 (= 24.0.5-1ubuntu1), libglx0 (= 1.7.0-1build1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu6), libgnutls30t64 (= 3.8.3-1.1ubuntu3), libgomp1 (= 14-20240412-0ubuntu1), libgpg-error0 (= 1.47-3build2), libgprofng0 (= 2.42-4ubuntu2), libgraphite2-3 (= 1.3.14-2build1), libgssapi-krb5-2 (= 1.20.1-6ubuntu2), libgtk-3-0t64 (= 3.24.41-4ubuntu1), libgtk-3-common (= 3.24.41-4ubuntu1), libgudev-1.0-0 (= 1:238-5ubuntu1), libharfbuzz0b (= 8.3.0-2build2), libhdf5-103-1t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-cpp-103-1t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-dev (= 1.10.10+repack-3.1ubuntu4), libhdf5-fortran-102t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-100t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-3.1ubuntu4), libhogweed6t64 (= 3.9.1-2.2build1), libhwasan0 (= 14-20240412-0ubuntu1), libhwloc-plugins (= 2.10.0-1build1), libhwloc15 (= 2.10.0-1build1), libibverbs1 (= 50.0-2build2), libice6 (= 2:1.0.10-1build3), libicu74 (= 74.2-1ubuntu3), libidn2-0 (= 2.3.7-2build1), libimagequant0 (= 2.18.0-1build1), libinput-bin (= 1.25.0-1ubuntu2), libinput10 (= 1.25.0-1ubuntu2), libisl23 (= 0.26-3build1), libitm1 (= 14-20240412-0ubuntu1), libjansson4 (= 2.14-2build2), libjbig-dev (= 2.1-6.1ubuntu2), libjbig0 (= 2.1-6.1ubuntu2), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu2), libjpeg-turbo8-dev (= 2.1.5-2ubuntu2), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjq1 (= 1.7.1-3build1), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-sphinxdoc (= 7.2.6-6), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjson-c5 (= 0.17-1build1), libk5crypto3 (= 1.20.1-6ubuntu2), libkeyutils1 (= 1.6.3-3build1), libkmod2 (= 31+20240202-2ubuntu7), libkrb5-3 (= 1.20.1-6ubuntu2), libkrb5support0 (= 1.20.1-6ubuntu2), liblapack3 (= 3.12.0-3build1), liblbfgsb0 (= 3.0+dfsg.4-1build1), liblcms2-2 (= 2.14-2build1), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu8), liblerc-dev (= 4.0.0+ds-4ubuntu2), liblerc4 (= 4.0.0+ds-4ubuntu2), libllvm17t64 (= 1:17.0.6-9ubuntu1), liblsan0 (= 14-20240412-0ubuntu1), liblz4-1 (= 1.9.4-1build1), liblz4-dev (= 1.9.4-1build1), liblzf1 (= 3.6-4), liblzma-dev (= 5.6.1+really5.4.5-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2build1), libmd4c0 (= 0.4.8-1build1), libmmdb2-0 (= 2.0.22-1), libmmdb2-dev (= 2.0.22-1), libmount1 (= 2.39.3-9ubuntu6), libmpc3 (= 1.3.1-1build1), libmpfr6 (= 4.2.1-1build1), libmtdev1t64 (= 1.1.6-1.1build1), libmunge2 (= 0.5.15-4build1), libncursesw6 (= 6.4+20240113-1ubuntu2), libnetcdf19t64 (= 1:4.9.2-5ubuntu4), libnettle8t64 (= 3.9.1-2.2build1), libnghttp2-14 (= 1.59.0-1build4), libnl-3-200 (= 3.7.0-0.3build1), libnl-route-3-200 (= 3.7.0-0.3build1), libnotify4 (= 0.8.3-1build2), libonig5 (= 6.9.9-1build1), libopengl-dev (= 1.7.0-1build1), libopengl0 (= 1.7.0-1build1), libopenjp2-7 (= 2.5.0-2build3), libopenmpi3t64 (= 4.1.6-7ubuntu2), libp11-kit0 (= 0.25.3-4ubuntu2), libpam-modules (= 1.5.3-5ubuntu5), libpam-modules-bin (= 1.5.3-5ubuntu5), libpam-runtime (= 1.5.3-5ubuntu5), libpam-systemd (= 255.4-1ubuntu8), libpam0g (= 1.5.3-5ubuntu5), libpango-1.0-0 (= 1.52.1+ds-1build1), libpangocairo-1.0-0 (= 1.52.1+ds-1build1), libpangoft2-1.0-0 (= 1.52.1+ds-1build1), libpciaccess0 (= 0.17-3build1), libpcre2-16-0 (= 10.42-4ubuntu2), libpcre2-32-0 (= 10.42-4ubuntu2), libpcre2-8-0 (= 10.42-4ubuntu2), libperl5.38t64 (= 5.38.2-3.2build2), libpipeline1 (= 1.5.7-2), libpixman-1-0 (= 0.42.2-1build1), libpkgconf3 (= 1.8.1-2build1), libpmix2t64 (= 5.0.1-4.1build1), libpng16-16t64 (= 1.6.43-5build1), libpopt0 (= 1.19+dfsg-1build1), libproc2-0 (= 2:4.0.4-4ubuntu3), libpsl5t64 (= 0.21.2-1.1build1), libpthread-stubs0-dev (= 0.4-1build3), libpython3-all-dev (= 3.12.3-0ubuntu1), libpython3-dev (= 3.12.3-0ubuntu1), libpython3-stdlib (= 3.12.3-0ubuntu1), libpython3.12-dev (= 3.12.3-1), libpython3.12-minimal (= 3.12.3-1), libpython3.12-stdlib (= 3.12.3-1), libpython3.12t64 (= 3.12.3-1), libqhull-r8.0 (= 2020.2-6build1), libqt5core5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5dbus5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5designer5 (= 5.15.13-1), libqt5gui5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5help5 (= 5.15.13-1), libqt5network5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5opengl5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5printsupport5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5sql5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5test5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5widgets5t64 (= 5.15.13+dfsg-1ubuntu1), libqt5xml5t64 (= 5.15.13+dfsg-1ubuntu1), libraqm0 (= 0.10.1-1build1), librdmacm1t64 (= 50.0-2build2), libreadline8t64 (= 8.2-4build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu3), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu3), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsemanage-common (= 3.5-1build5), libsemanage2 (= 3.5-1build5), libsensors-config (= 1:3.6.0-9build1), libsensors5 (= 1:3.6.0-9build1), libsepol2 (= 3.5-2build1), libsframe1 (= 2.42-4ubuntu2), libsharpyuv-dev (= 1.3.2-0.4build3), libsharpyuv0 (= 1.3.2-0.4build3), libsm6 (= 2:1.2.3-1build3), libsmartcols1 (= 2.39.3-9ubuntu6), libsqlite3-0 (= 3.45.1-1ubuntu2), libssh-4 (= 0.10.6-2build2), libssl-dev (= 3.0.13-0ubuntu3), libssl3t64 (= 3.0.13-0ubuntu3), libssm-dev (= 1.4.0-2), libssm2 (= 1.4.0-2), libstdc++-13-dev (= 13.2.0-23ubuntu4), libstdc++6 (= 14-20240412-0ubuntu1), libsub-override-perl (= 0.10-1), libsystemd-shared (= 255.4-1ubuntu8), libsystemd0 (= 255.4-1ubuntu8), libsz2 (= 1.1.2-1build1), libtasn1-6 (= 4.19.0-3build1), libtcl8.6 (= 8.6.14+dfsg-1build1), libthai-data (= 0.1.29-2build1), libthai0 (= 0.1.29-2build1), libtiff-dev (= 4.5.1+git230720-4ubuntu2), libtiff6 (= 4.5.1+git230720-4ubuntu2), libtiffxx6 (= 4.5.1+git230720-4ubuntu2), libtinfo6 (= 6.4+20240113-1ubuntu2), libtk8.6 (= 8.6.14-1build1), libtool (= 2.4.7-7build1), libtsan2 (= 14-20240412-0ubuntu1), libubsan1 (= 14-20240412-0ubuntu1), libuchardet0 (= 0.0.8-1build1), libucx0 (= 1.16.0+ds-5ubuntu1), libudev1 (= 255.4-1ubuntu8), libunistring5 (= 1.1-2build1), libuuid1 (= 2.39.3-9ubuntu6), libvulkan1 (= 1.3.275.0-1build1), libwacom-common (= 2.10.0-2), libwacom9 (= 2.10.0-2), libwayland-client0 (= 1.22.0-2.1build1), libwayland-cursor0 (= 1.22.0-2.1build1), libwayland-egl1 (= 1.22.0-2.1build1), libwayland-server0 (= 1.22.0-2.1build1), libwebp-dev (= 1.3.2-0.4build3), libwebp7 (= 1.3.2-0.4build3), libwebpdecoder3 (= 1.3.2-0.4build3), libwebpdemux2 (= 1.3.2-0.4build3), libwebpmux3 (= 1.3.2-0.4build3), libwxbase3.2-1t64 (= 3.2.4+dfsg-4build1), libwxgtk-gl3.2-1t64 (= 3.2.4+dfsg-4build1), libwxgtk3.2-1t64 (= 3.2.4+dfsg-4build1), libx11-6 (= 2:1.8.7-1build1), libx11-data (= 2:1.8.7-1build1), libx11-dev (= 2:1.8.7-1build1), libx11-xcb1 (= 2:1.8.7-1build1), libxau-dev (= 1:1.0.9-1build6), libxau6 (= 1:1.0.9-1build6), libxcb-dri2-0 (= 1.15-1ubuntu2), libxcb-dri3-0 (= 1.15-1ubuntu2), libxcb-glx0 (= 1.15-1ubuntu2), libxcb-icccm4 (= 0.4.1-1.1build3), libxcb-image0 (= 0.4.0-2build1), libxcb-keysyms1 (= 0.4.0-1build4), libxcb-present0 (= 1.15-1ubuntu2), libxcb-randr0 (= 1.15-1ubuntu2), libxcb-render-util0 (= 0.3.9-1build4), libxcb-render0 (= 1.15-1ubuntu2), libxcb-shape0 (= 1.15-1ubuntu2), libxcb-shm0 (= 1.15-1ubuntu2), libxcb-sync1 (= 1.15-1ubuntu2), libxcb-util1 (= 0.4.0-1build3), libxcb-xfixes0 (= 1.15-1ubuntu2), libxcb-xinerama0 (= 1.15-1ubuntu2), libxcb-xinput0 (= 1.15-1ubuntu2), libxcb-xkb1 (= 1.15-1ubuntu2), libxcb1 (= 1.15-1ubuntu2), libxcb1-dev (= 1.15-1ubuntu2), libxcomposite1 (= 1:0.4.5-1build3), libxcursor1 (= 1:1.2.1-1build1), libxdamage1 (= 1:1.1.6-1build1), libxdmcp-dev (= 1:1.1.3-0ubuntu6), libxdmcp6 (= 1:1.1.3-0ubuntu6), libxext6 (= 2:1.3.4-1build2), libxfixes3 (= 1:6.0.0-2build1), libxft2 (= 2.3.6-1build1), libxi6 (= 2:1.8.1-1build1), libxinerama1 (= 2:1.1.4-3build1), libxkbcommon-x11-0 (= 1.6.0-1build1), libxkbcommon0 (= 1.6.0-1build1), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libxnvctrl0 (= 510.47.03-0ubuntu4), libxrandr2 (= 2:1.5.2-2build1), libxrender1 (= 1:0.9.10-1.1build1), libxshmfence1 (= 1.3-1build5), libxslt1.1 (= 1.1.39-0exp1build1), libxss1 (= 1:1.2.3-1build3), libxtst6 (= 2:1.2.3-1.1build1), libxxf86vm1 (= 1:1.1.4-1build4), libxxhash0 (= 0.8.2-2build1), libzstd-dev (= 1.5.5+dfsg2-2build1), libzstd1 (= 1.5.5+dfsg2-2build1), linux-libc-dev (= 6.8.0-31.31), login (= 1:4.13+dfsg1-4ubuntu3), lto-disabled-list (= 47), m4 (= 1.4.19-4build1), make (= 4.3-4.1build2), man-db (= 2.12.0-4build2), mawk (= 1.3.4.20240123-1build1), media-types (= 10.1.0), mount (= 2.39.3-9ubuntu6), ncurses-base (= 6.4+20240113-1ubuntu2), ncurses-bin (= 6.4+20240113-1ubuntu2), netbase (= 6.4), ocl-icd-libopencl1 (= 2.3.2-1build1), openssl (= 3.0.13-0ubuntu3), passwd (= 1:4.13+dfsg1-4ubuntu3), patch (= 2.7.6-7build3), perl (= 5.38.2-3.2build2), perl-base (= 5.38.2-3.2build2), perl-modules-5.38 (= 5.38.2-3.2build2), pkg-config (= 1.8.1-2build1), pkgconf (= 1.8.1-2build1), pkgconf-bin (= 1.8.1-2build1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4ubuntu3), pybind11-dev (= 2.11.1-2), pymol-data (= 2.5.0+dfsg-1build6), python-matplotlib-data (= 3.6.3-1ubuntu5), python3 (= 3.12.3-0ubuntu1), python3-all (= 3.12.3-0ubuntu1), python3-all-dev (= 3.12.3-0ubuntu1), python3-appdirs (= 1.4.4-4), python3-attr (= 23.2.0-2), python3-biopython (= 1.83+dfsg1-1), python3-brotli (= 1.1.0-2build2), python3-cairo (= 1.25.1-2build2), python3-certifi (= 2023.11.17-1), python3-chardet (= 5.2.0+dfsg-1), python3-contourpy (= 1.0.7-2build1), python3-cycler (= 0.11.0-2), python3-dateutil (= 2.8.2-3ubuntu1), python3-decorator (= 5.1.1-5), python3-dev (= 3.12.3-0ubuntu1), python3-fonttools (= 4.46.0-1build2), python3-freetype (= 2.4.0-1), python3-fs (= 2.4.16-3), python3-h5py (= 3.10.0-1ubuntu3), python3-h5py-serial (= 3.10.0-1ubuntu3), python3-idna (= 3.6-2), python3-iniconfig (= 1.1.1-2), python3-kiwisolver (= 1.4.4-2build1), python3-lxml (= 5.2.1-1), python3-lz4 (= 4.0.2+dfsg-1build4), python3-matplotlib (= 3.6.3-1ubuntu5), python3-minimal (= 3.12.3-0ubuntu1), python3-mpmath (= 1.2.1-3), python3-mrcfile (= 1.4.3-3), python3-msgpack (= 1.0.3-3build2), python3-numpy (= 1:1.26.4+ds-6ubuntu1), python3-nxmx (= 0.0.3-2), python3-opengl (= 3.1.7+dfsg-1), python3-orderedset (= 2.0.3+ds1-2build1), python3-packaging (= 24.0-1), python3-pil (= 10.2.0-1build1), python3-pil.imagetk (= 10.2.0-1build1), python3-pint (= 0.19.2-1), python3-pip (= 24.0+dfsg-1ubuntu1), python3-pkg-resources (= 68.1.2-2ubuntu1), python3-pluggy (= 1.4.0-1), python3-procrunner (= 2.3.3-1), python3-psutil (= 5.9.8-2build2), python3-pycbf (= 0.9.7+dfsg1-3.1build2), python3-pymol (= 2.5.0+dfsg-1build6), python3-pyparsing (= 3.1.1-1), python3-pyqt5 (= 5.15.10+dfsg-1build6), python3-pyqt5.qtopengl (= 5.15.10+dfsg-1build6), python3-pyqt5.sip (= 12.13.0-1build3), python3-pytest (= 7.4.4-1), python3-reportlab (= 4.1.0-4), python3-requests (= 2.31.0+dfsg-1ubuntu1), python3-rlpycairo (= 0.3.0-3), python3-scipy (= 1.11.4-6build1), python3-setuptools (= 68.1.2-2ubuntu1), python3-six (= 1.16.0-4), python3-sympy (= 1.12-7), python3-tk (= 3.12.3-0ubuntu1), python3-tqdm (= 4.66.2-2), python3-tz (= 2024.1-2), python3-ufolib2 (= 0.16.0+dfsg1-1), python3-urllib3 (= 2.0.7-1), python3-wheel (= 0.42.0-2), python3-wxgtk4.0 (= 4.2.1+dfsg-3build2), python3.12 (= 3.12.3-1), python3.12-dev (= 3.12.3-1), python3.12-minimal (= 3.12.3-1), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu7), rsync (= 3.2.7-1ubuntu1), scons (= 4.5.2+dfsg-1), sed (= 4.9-2build1), sensible-utils (= 0.0.22), sfftw-dev (= 2.1.5-6build2), sfftw2 (= 2.1.5-6build2), sgml-base (= 1.31), shared-mime-info (= 2.4-4), sphinx-rtd-theme-common (= 2.0.0+dfsg-1), systemd (= 255.4-1ubuntu8), systemd-dev (= 255.4-1ubuntu8), systemd-sysv (= 255.4-1ubuntu8), sysvinit-utils (= 3.08-6ubuntu3), tar (= 1.35+dfsg-3build1), tk8.6-blt2.5 (= 2.5.3+dfsg-7build1), tzdata (= 2024a-2ubuntu1), ubuntu-mono (= 24.04-0ubuntu1), unicode-data (= 15.1.0-1), util-linux (= 2.39.3-9ubuntu6), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu3), x11proto-dev (= 2023.2-1), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build3), xkb-data (= 2.41-2ubuntu1), xml-core (= 0.19), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1713799896" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb ------------------------------------------------------ new Debian package, version 2.0. size 1191356 bytes: control archive=23409 bytes. 3048 bytes, 56 lines control 63704 bytes, 826 lines md5sums Package: libcctbx-dev Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build3 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 8583 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2023.12+ds2+~3.17.0+ds1-4build3) Section: devel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everythings needed to link against the cctbx libraries. 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drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/multipolar/ -rw-r--r-- root/root 1824 2023-12-31 12:57 ./usr/include/cctbx/multipolar/aspherical.h -rw-r--r-- root/root 2029 2023-12-31 12:57 ./usr/include/cctbx/restraints.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/ -rw-r--r-- root/root 1655 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/basic.h -rw-r--r-- root/root 4194 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/brick.h -rw-r--r-- root/root 10494 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/change_of_basis_op.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/proto/ -rw-r--r-- root/root 1762 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h -rw-r--r-- root/root 11776 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/proto/cut.h -rw-r--r-- root/root 7108 2023-12-31 12:57 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2023-12-31 12:57 ./usr/include/cctbx/symmetry_search/ -rw-r--r-- root/root 6094 2023-12-31 12:57 ./usr/include/cctbx/symmetry_search/translation_refinement.h -rw-r--r-- root/root 492 2023-12-31 12:57 ./usr/include/cctbx/tagged_value.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/translation_search/ -rw-r--r-- root/root 2224 2023-12-31 12:57 ./usr/include/cctbx/translation_search/fast_nv1995.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/translation_search/fast_nv1995/ -rw-r--r-- root/root 2516 2023-12-31 12:57 ./usr/include/cctbx/translation_search/fast_nv1995/combinations.h -rw-r--r-- root/root 1521 2023-12-31 12:57 ./usr/include/cctbx/translation_search/fast_nv1995/intermediates.h -rw-r--r-- root/root 8723 2023-12-31 12:57 ./usr/include/cctbx/translation_search/fast_nv1995/summations.h -rw-r--r-- root/root 4175 2023-12-31 12:57 ./usr/include/cctbx/translation_search/fast_terms.h -rw-r--r-- root/root 138 2023-12-31 12:57 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./usr/include/smtbx/structure_factors/direct/table_based.h drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/include/spotfinder/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/spotfinder/applications/ -rw-r--r-- root/root 2023 2023-12-31 12:57 ./usr/include/spotfinder/applications/find_active_area.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/boost_python/ -rw-r--r-- root/root 3218 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/boost_python/singlemask.h -rw-r--r-- root/root 4008 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/distl.h -rw-r--r-- root/root 2509 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/hough.h -rw-r--r-- root/root 15844 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/libdistl.h -rw-r--r-- root/root 5293 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/spot_shapes.h -rw-r--r-- root/root 276 2023-12-31 12:57 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2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libspotfinder.so -> libspotfinder.so.0.0.1 drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/ lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/share/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/share/doc/libcctbx-dev/ lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/share/doc/libcctbx-dev/changelog.Debian.gz -> ../libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38654 2024-02-28 12:45 ./usr/share/doc/libcctbx-dev/copyright libcctbx0_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb --------------------------------------------------- new Debian package, version 2.0. size 2012238 bytes: control archive=2522 bytes. 3138 bytes, 56 lines control 1754 bytes, 21 lines md5sums 1076 bytes, 19 lines shlibs 75 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build3 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 7387 Depends: libann-cctbx0 (>= 1.1.2+doc), libboost-python1.83.0 (>= 1.83.0), libboost-python1.83.0-py312, libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - runtime libraries Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide the cctbx runtime libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2024-04-22 15:31 ./ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 -rw-r--r-- root/root 68136 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 -rw-r--r-- root/root 330704 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libcbf-private.so.0 -> libcbf-private.so.0.0.1 -rw-r--r-- root/root 68376 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libccp4io.so.0 -> libccp4io.so.0.0.1 -rw-r--r-- root/root 67640 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libcctbx.so.0 -> libcctbx.so.0.0.1 -rw-r--r-- root/root 2554424 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 -rw-r--r-- root/root 1511936 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 -rw-r--r-- root/root 133752 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 -rw-r--r-- root/root 265200 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 -rw-r--r-- root/root 816424 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 -rw-r--r-- root/root 68336 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 -rw-r--r-- root/root 265248 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 -rw-r--r-- root/root 133760 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libomptbx.so.0 -> libomptbx.so.0.0.1 -rw-r--r-- root/root 67752 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/librstbx.so.0 -> librstbx.so.0.0.1 -rw-r--r-- root/root 133776 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 -rw-r--r-- root/root 68176 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 -rw-r--r-- root/root 68056 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 -rw-r--r-- root/root 67680 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 -rw-r--r-- root/root 461496 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libspotfinder.so.0 -> libspotfinder.so.0.0.1 -rw-r--r-- root/root 330488 2024-04-22 15:31 ./usr/lib/aarch64-linux-gnu/libspotfinder.so.0.0.1 drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/share/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/share/doc/libcctbx0/ -rw-r--r-- root/root 1390 2024-04-22 15:31 ./usr/share/doc/libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38654 2024-02-28 12:45 ./usr/share/doc/libcctbx0/copyright python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build3_arm64.deb ------------------------------------------------------- new Debian package, version 2.0. size 26878664 bytes: control archive=125462 bytes. 3847 bytes, 56 lines control 488304 bytes, 5037 lines md5sums 273 bytes, 12 lines * postinst #!/bin/sh 386 bytes, 12 lines * prerm #!/bin/sh 11500 bytes, 169 lines shlibs 75 bytes, 2 lines triggers Package: python3-cctbx Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build3 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 175171 Depends: ca-certificates, libcctbx-dev (= 2023.12+ds2+~3.17.0+ds1-4build3), libcctbx0 (= 2023.12+ds2+~3.17.0+ds1-4build3), python3-pycbf (>= 0.9.7+dfsg1-2~), python3 (<< 3.13), python3 (>= 3.12~), python3-h5py (>= 3), python3-matplotlib, python3-mrcfile, python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3-nxmx, python3-orderedset, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.83.0 (>= 1.83.0), libboost-numpy1.83.0-py312, libboost-python1.83.0 (>= 1.83.0), libboost-python1.83.0-py312, libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.5), libgl1, libglu1-mesa | libglu1, libhdf5-103-1t64, libmmdb2-0 (>= 2.0.22), libssm2 (>= 1.4.0), libstdc++6 (>= 13.1) Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide a selected collection of python modules from the cctbx project. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2024-04-22 15:31 ./ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/bin/ -rwxr-xr-x root/root 3260 2024-04-22 15:31 ./usr/bin/annlib.python -rwxr-xr-x root/root 3803 2024-04-22 15:31 ./usr/bin/annlib.show_build_path -rwxr-xr-x root/root 3803 2024-04-22 15:31 ./usr/bin/annlib.show_dist_paths -rwxr-xr-x root/root 3775 2024-04-22 15:31 ./usr/bin/boost.gcd -rwxr-xr-x root/root 3775 2024-04-22 15:31 ./usr/bin/boost.lcm -rwxr-xr-x root/root 3259 2024-04-22 15:31 ./usr/bin/boost.python -rwxr-xr-x root/root 3802 2024-04-22 15:31 ./usr/bin/boost.show_build_path -rwxr-xr-x root/root 3802 2024-04-22 15:31 ./usr/bin/boost.show_dist_paths -rwxr-xr-x root/root 3827 2024-04-22 15:31 ./usr/bin/boost_adaptbx.divide_by_zero -rwxr-xr-x root/root 3831 2024-04-22 15:31 ./usr/bin/boost_adaptbx.double_overflow -rwxr-xr-x root/root 3799 2024-04-22 15:31 ./usr/bin/boost_adaptbx.inexact -rwxr-xr-x 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15:31 ./usr/bin/phenix.find_peaks_holes -rwxr-xr-x root/root 3836 2024-04-22 15:31 ./usr/bin/phenix.find_reticular_twin_laws -rwxr-xr-x root/root 3800 2024-04-22 15:31 ./usr/bin/phenix.find_tls_groups -rwxr-xr-x root/root 3764 2024-04-22 15:31 ./usr/bin/phenix.fmodel -rwxr-xr-x root/root 3816 2024-04-22 15:31 ./usr/bin/phenix.fobs_minus_fobs_map -rwxr-xr-x root/root 3808 2024-04-22 15:31 ./usr/bin/phenix.form_factor_query -rwxr-xr-x root/root 3792 2024-04-22 15:31 ./usr/bin/phenix.french_wilson -rwxr-xr-x root/root 3824 2024-04-22 15:31 ./usr/bin/phenix.geometry_minimization -rwxr-xr-x root/root 3788 2024-04-22 15:31 ./usr/bin/phenix.grow_density -rwxr-xr-x root/root 3760 2024-04-22 15:31 ./usr/bin/phenix.hbond -rwxr-xr-x root/root 3856 2024-04-22 15:31 ./usr/bin/phenix.helix_sheet_recs_as_pdb_files -rwxr-xr-x root/root 3837 2024-04-22 15:31 ./usr/bin/phenix.image_viewer -rwxr-xr-x root/root 3772 2024-04-22 15:31 ./usr/bin/phenix.kinemage -rwxr-xr-x root/root 3768 2024-04-22 15:31 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root/root 3259 2024-04-22 15:31 ./usr/bin/rstbx.python -rwxr-xr-x root/root 3802 2024-04-22 15:31 ./usr/bin/rstbx.show_build_path -rwxr-xr-x root/root 3802 2024-04-22 15:31 ./usr/bin/rstbx.show_dist_paths -rwxr-xr-x root/root 3791 2024-04-22 15:31 ./usr/bin/rstbx.simage.create -rwxr-xr-x root/root 3902 2024-04-22 15:31 ./usr/bin/rstbx.simage.explore_completeness -rwxr-xr-x root/root 3791 2024-04-22 15:31 ./usr/bin/rstbx.simage.solver -rwxr-xr-x root/root 3862 2024-04-22 15:31 ./usr/bin/rstbx.simage.wx_display -rwxr-xr-x root/root 3777 2024-04-22 15:31 ./usr/bin/samosa.join -rwxr-xr-x root/root 3781 2024-04-22 15:31 ./usr/bin/samosa.scale -rwxr-xr-x root/root 3823 2024-04-22 15:31 ./usr/bin/scitbx.apply_tapenade_hints -rwxr-xr-x root/root 3807 2024-04-22 15:31 ./usr/bin/scitbx.generate_error_h -rwxr-xr-x root/root 3779 2024-04-22 15:31 ./usr/bin/scitbx.histogram -rwxr-xr-x root/root 3260 2024-04-22 15:31 ./usr/bin/scitbx.python -rwxr-xr-x root/root 3803 2024-04-22 15:31 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root/root 3802 2024-04-22 15:31 ./usr/bin/smtbx.show_build_path -rwxr-xr-x root/root 3802 2024-04-22 15:31 ./usr/bin/smtbx.show_dist_paths -rwxr-xr-x root/root 3784 2024-04-22 15:31 ./usr/bin/sphinx.build -rwxr-xr-x root/root 3264 2024-04-22 15:31 ./usr/bin/spotfinder.python -rwxr-xr-x root/root 3807 2024-04-22 15:31 ./usr/bin/spotfinder.show_build_path -rwxr-xr-x root/root 3807 2024-04-22 15:31 ./usr/bin/spotfinder.show_dist_paths -rwxr-xr-x root/root 3930 2024-04-22 15:31 ./usr/bin/wxtbx.anomalous_differences_histogram -rwxr-xr-x root/root 3886 2024-04-22 15:31 ./usr/bin/wxtbx.inspect_r_free_flags -rwxr-xr-x root/root 3847 2024-04-22 15:31 ./usr/bin/wxtbx.plan_sad_experiment -rwxr-xr-x root/root 3259 2024-04-22 15:31 ./usr/bin/wxtbx.python -rwxr-xr-x root/root 3802 2024-04-22 15:31 ./usr/bin/wxtbx.show_build_path -rwxr-xr-x root/root 3802 2024-04-22 15:31 ./usr/bin/wxtbx.show_dist_paths -rwxr-xr-x root/root 3862 2024-04-22 15:31 ./usr/bin/wxtbx.show_file_info -rwxr-xr-x root/root 3799 2024-04-22 15:31 ./usr/bin/wxtbx.xtriage drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/boost_adaptbx/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/boost_adaptbx/tests/ -rwxr-xr-x root/root 67760 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/iotbx/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/iotbx/pdb/ -rwxr-xr-x root/root 133400 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem -rw-r--r-- root/root 121305 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/libtbx_env drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/scitbx/ drwxr-xr-x root/root 0 2024-04-22 15:31 ./usr/lib/cctbx/python3.12/scitbx/array_family/ 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./usr/share/lintian/overrides/ -rw-r--r-- root/root 1 2024-02-28 12:45 ./usr/share/lintian/overrides/python3-cctbx +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 8043900 Build-Time: 8447 Distribution: noble-proposed Host Architecture: arm64 Install-Time: 367 Job: cctbx_2023.12+ds2+~3.17.0+ds1-4build3.dsc Machine Architecture: arm64 Package: cctbx Package-Time: 8821 Source-Version: 2023.12+ds2+~3.17.0+ds1-4build3 Space: 8043900 Status: successful Version: 2023.12+ds2+~3.17.0+ds1-4build3 -------------------------------------------------------------------------------- Finished at 2024-04-22T18:56:44Z Build needed 02:27:01, 8043900k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28134722 Scanning for processes to kill in build PACKAGEBUILD-28134722