Ubuntu
bifrost package

bifrost 1.3.1-1 source package in Ubuntu

Changelog

bifrost (1.3.1-1) unstable; urgency=medium

  * Source-only upload.
  * New upstream version
  * Remove trailing whitespace in debian/copyright (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 05 Jan 2024 09:14:39 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
bifrost_1.3.1-1.dsc 2.0 KiB e998b3eb46148fb06bd67ad4d1a23d88e82d8369335c542f57e0d5e6eca89257
bifrost_1.3.1.orig.tar.gz 341.7 KiB d6a9baacddba8e9508336c5adff15a8a482774c724fc0710392fed7bb9ad1e8b
bifrost_1.3.1-1.debian.tar.xz 247.1 KiB 6b7fa56dd267ab84746d3169cf7a53471c6954176250fe88a7b074cc5fdb9676

Available diffs

No changes file available.

Binary packages built by this source

bifrost: parallel construction, indexing and querying of de Bruijn graphs

 Bifrost is a command-line tool for sequencing that features a broad
 range of functions, such as indexing, editing, and querying the graph,
 and includes a graph coloring method that maps each k-mer of the graph
 to the genomes it occurs in.
 .
  * Build, index, color and query the compacted de Bruijn graph
  * No need to build the uncompacted de Bruijn graph
  * Reads or assembled genomes as input
  * Output graph in GFA (can be visualized with Bandage), FASTA or binary
  * Graph cleaning: short tip clipping, etc.
  * Multi-threaded
  * No parameters to estimate with other tools
  * Exact or approximate k-mer search of queries

bifrost-dbgsym: debug symbols for bifrost
libbifrost-dev: static library and header files for libbifrost

 Libbifrost-dev is the development library for the command-line tool
 bifrost for sequencing that features a broad range of functions, such as
 indexing, editing, and querying the graph, and includes a graph coloring
 method that maps each k-mer of the graph to the genomes it occurs in.
 .
  * Build, index, color and query the compacted de Bruijn graph
  * No need to build the uncompacted de Bruijn graph
  * Reads or assembled genomes as input
  * Output graph in GFA (can be visualized with Bandage), FASTA or binary
  * Graph cleaning: short tip clipping, etc.
  * Multi-threaded
  * No parameters to estimate with other tools
  * Exact or approximate k-mer search of queries

libbifrost0: library for parallel construction, indexing and querying of de Bruijn graphs

 Libbifrost is the shared library for the command-line tool bifrost for
 sequencing that features a broad range of functions, such as indexing,
 editing, and querying the graph, and includes a graph coloring method
 that maps each k-mer of the graph to the genomes it occurs in.
 .
  * Build, index, color and query the compacted de Bruijn graph
  * No need to build the uncompacted de Bruijn graph
  * Reads or assembled genomes as input
  * Output graph in GFA (can be visualized with Bandage), FASTA or binary
  * Graph cleaning: short tip clipping, etc.
  * Multi-threaded
  * No parameters to estimate with other tools
  * Exact or approximate k-mer search of queries

libbifrost0-dbgsym: debug symbols for libbifrost0