https://launchpad.net/ubuntu/+source/atropos/1.1.24+dfsg-1build1/+build/19100173 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-020 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 6 Apr 20:47:50 ntpdate[60682]: adjust time server 10.211.37.1 offset -0.000186 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100173 --image-type chroot /home/buildd/filecache-default/88ad86cb2b525f1abddded96eadf8014548f7845 Creating target for build PACKAGEBUILD-19100173 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100173 Starting target for build PACKAGEBUILD-19100173 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100173 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-19100173 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100173 Updating target for build PACKAGEBUILD-19100173 Ign:1 http://archive-team.internal/bootstrap/riscv64 focal InRelease Get:2 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal Release [757 B] Ign:4 http://archive-team.internal/bootstrap/riscv64 focal Release.gpg Get:5 http://ftpmaster.internal/ubuntu focal-proposed InRelease [265 kB] Get:6 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 Packages [171 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 Packages [826 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:9 http://ftpmaster.internal/ubuntu focal/universe riscv64 Packages [6853 kB] Get:10 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5128 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 Packages [29.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [26.2 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/restricted Translation-en [860 B] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 Packages [128 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [113 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/multiverse riscv64 Packages [1140 B] Fetched 14.3 MB in 23s (619 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt coreutils cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base libapt-pkg6.0 libc-bin libc-dev-bin libc6 libc6-dev libgcc-9-dev libgnutls30 liblocale-gettext-perl libperl5.30 libstdc++-9-dev libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 login passwd perl-base 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 40.4 MB of archives. After this operation, 329 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu focal/main riscv64 coreutils riscv64 8.30-3ubuntu2 [1158 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 login riscv64 1:4.8.1-1ubuntu4 [216 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 perl-base riscv64 5.30.0-9build1 [1419 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6-dev riscv64 2.31-0ubuntu7 [3659 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-dev-bin riscv64 2.31-0ubuntu7 [62.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6 riscv64 2.31-0ubuntu7 [2272 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-bin riscv64 2.31-0ubuntu7 [505 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libsystemd0 riscv64 245.2-1ubuntu3 [242 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libudev1 riscv64 245.2-1ubuntu3 [69.0 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 libapt-pkg6.0 riscv64 2.0.1ubuntu1 [797 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libgnutls30 riscv64 3.6.13-2ubuntu1 [720 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 apt riscv64 2.0.1ubuntu1 [1231 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 liblocale-gettext-perl riscv64 1.07-4 [16.5 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 passwd riscv64 1:4.8.1-1ubuntu4 [752 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-charwidth-perl riscv64 0.04-10 [9460 B] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-iconv-perl riscv64 1.7-7 [13.2 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 g++-9 riscv64 9.3.0-10ubuntu1 [6926 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9 riscv64 9.3.0-10ubuntu1 [6788 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 libstdc++-9-dev riscv64 9.3.0-10ubuntu1 [3649 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 libgcc-9-dev riscv64 9.3.0-10ubuntu1 [404 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 cpp-9 riscv64 9.3.0-10ubuntu1 [6046 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9-base riscv64 9.3.0-10ubuntu1 [19.2 kB] Get:23 http://ftpmaster.internal/ubuntu focal/universe riscv64 gcc-8-base riscv64 8.4.0-3ubuntu2 [18.4 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 libperl5.30 riscv64 5.30.0-9build1 [3422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.4 MB in 6s (6790 kB/s) (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_riscv64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu2) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu4_riscv64.deb ... Unpacking login (1:4.8.1-1ubuntu4) over (1:4.8.1-1ubuntu3) ... Setting up login (1:4.8.1-1ubuntu4) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-9build1_riscv64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc-dev-bin_2.31-0ubuntu7_riscv64.deb ... 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Setting up libudev1:riscv64 (245.2-1ubuntu3) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.0.1ubuntu1_riscv64.deb ... Unpacking libapt-pkg6.0:riscv64 (2.0.1ubuntu1) over (2.0.1) ... Setting up libapt-pkg6.0:riscv64 (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.13-2ubuntu1_riscv64.deb ... Unpacking libgnutls30:riscv64 (3.6.13-2ubuntu1) over (3.6.11.1-2ubuntu2) ... Setting up libgnutls30:riscv64 (3.6.13-2ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../apt_2.0.1ubuntu1_riscv64.deb ... Unpacking apt (2.0.1ubuntu1) over (2.0.1) ... Setting up apt (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-4) over (1.07-4) ... 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Unpacking libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../6-cpp-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking cpp-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../7-gcc-9-base_9.3.0-10ubuntu1_riscv64.deb ... Unpacking gcc-9-base:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../8-gcc-8-base_8.4.0-3ubuntu2_riscv64.deb ... Unpacking gcc-8-base:riscv64 (8.4.0-3ubuntu2) over (8.4.0-3ubuntu1) ... Preparing to unpack .../9-libperl5.30_5.30.0-9build1_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-9build1) over (5.30.0-9build1) ... Setting up libtext-iconv-perl (1.7-7) ... Setting up libtext-charwidth-perl (0.04-10) ... Setting up gcc-8-base:riscv64 (8.4.0-3ubuntu2) ... Setting up libperl5.30:riscv64 (5.30.0-9build1) ... Setting up libc-dev-bin (2.31-0ubuntu7) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:riscv64 (9.3.0-10ubuntu1) ... Setting up libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up cpp-9 (9.3.0-10ubuntu1) ... Setting up libc6-dev:riscv64 (2.31-0ubuntu7) ... Setting up gcc-9 (9.3.0-10ubuntu1) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up g++-9 (9.3.0-10ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19100173 riscv64 focal -c chroot:build-PACKAGEBUILD-19100173 --arch=riscv64 --dist=focal --nolog atropos_1.1.24+dfsg-1build1.dsc Initiating build PACKAGEBUILD-19100173 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-020 +==============================================================================+ | atropos 1.1.24+dfsg-1build1 (riscv64) Mon, 06 Apr 2020 20:51:06 +0000 | +==============================================================================+ Package: atropos Version: 1.1.24+dfsg-1build1 Source Version: 1.1.24+dfsg-1build1 Distribution: focal Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19100173/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/atropos-T1X8y6/resolver-Z0iYcj' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- atropos_1.1.24+dfsg-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/atropos-T1X8y6/atropos-1.1.24+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/atropos-T1X8y6' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pytest, python3-jinja2, python3-pysam, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pytest, python3-jinja2, python3-pysam, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [423 B] Get:5 copy:/<>/apt_archive ./ Packages [495 B] Fetched 1875 B in 0s (4361 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu66 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db mime-support po-debconf python3 python3-atomicwrites python3-attr python3-dev python3-distutils python3-importlib-metadata python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest python3-setuptools python3-six python3-wcwidth python3-zipp python3.8 python3.8-dev python3.8-minimal tzdata zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc python-jinja2-doc subversion python-pyparsing-doc python-setuptools-doc python3.8-venv python3.8-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu66 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db mime-support po-debconf python3 python3-atomicwrites python3-attr python3-dev python3-distutils python3-importlib-metadata python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest python3-setuptools python3-six python3-wcwidth python3-zipp python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-main-dummy tzdata zlib1g-dev 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After this operation, 204 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-minimal riscv64 3.8.2-1ubuntu1 [698 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 libldap-2.4-2 riscv64 2.4.49+dfsg-2ubuntu1 [137 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 libexpat1 riscv64 2.2.9-1build1 [68.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8-minimal riscv64 3.8.2-1ubuntu1 [1447 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-minimal riscv64 3.8.2-0ubuntu2 [23.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 mime-support all 3.64ubuntu1 [30.6 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libmpdec2 riscv64 2.4.2-3 [79.2 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-stdlib riscv64 3.8.2-1ubuntu1 [1557 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8 riscv64 3.8.2-1ubuntu1 [364 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3-stdlib riscv64 3.8.2-0ubuntu2 [7072 B] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 python3 riscv64 3.8.2-0ubuntu2 [47.6 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 libglib2.0-0 riscv64 2.64.1-1 [1122 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main riscv64 libxml2 riscv64 2.9.10+dfsg-4build1 [558 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-pkg-resources all 45.2.0-1 [130 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-six all 1.14.0-2 [12.1 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main riscv64 libkrb5support0 riscv64 1.17-6ubuntu4 [28.3 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 libk5crypto3 riscv64 1.17-6ubuntu4 [91.8 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 libkeyutils1 riscv64 1.6-6ubuntu1 [9316 B] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 libkrb5-3 riscv64 1.17-6ubuntu4 [295 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 libgssapi-krb5-2 riscv64 1.17-6ubuntu4 [107 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main riscv64 libpsl5 riscv64 0.21.0-1ubuntu1 [50.5 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:42 http://ftpmaster.internal/ubuntu focal/universe riscv64 cython3 riscv64 0.29.14-0.1ubuntu3 [1361 kB] Get:43 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libtool all 2.4.6-14 [161 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:45 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:48 http://ftpmaster.internal/ubuntu focal/main riscv64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:50 http://ftpmaster.internal/ubuntu focal/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main riscv64 po-debconf all 1.0.21 [233 kB] Get:55 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 debhelper all 12.10ubuntu1 [877 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-lib2to3 all 3.8.2-1ubuntu1 [74.1 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-distutils all 3.8.2-1ubuntu1 [140 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 dh-python all 4.20200315 [85.8 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main riscv64 libroken18-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [36.5 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main riscv64 libasn1-8-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [145 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main riscv64 libbrotli1 riscv64 1.0.7-6build1 [279 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main riscv64 libheimbase1-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [24.7 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main riscv64 libhcrypto4-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [86.5 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main riscv64 libwind0-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [47.0 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main riscv64 libhx509-5-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [90.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main riscv64 libkrb5-26-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [175 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main riscv64 libheimntlm0-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [13.4 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main riscv64 libgssapi3-heimdal riscv64 7.7.0+dfsg-1ubuntu1 [83.3 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main riscv64 libsasl2-modules-db riscv64 2.1.27+dfsg-2 [13.7 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main riscv64 libsasl2-2 riscv64 2.1.27+dfsg-2 [45.2 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main riscv64 libldap-common all 2.4.49+dfsg-2ubuntu1 [17.3 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main riscv64 libnghttp2-14 riscv64 1.40.0-1build1 [70.9 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build1 [50.8 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main riscv64 libssh-4 riscv64 0.9.3-2ubuntu1 [147 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main riscv64 libcurl3-gnutls riscv64 7.68.0-1ubuntu1 [205 kB] Get:76 http://ftpmaster.internal/ubuntu focal/universe riscv64 libdeflate0 riscv64 1.5-3 [52.1 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main riscv64 libexpat1-dev riscv64 2.2.9-1build1 [224 kB] Get:78 http://ftpmaster.internal/ubuntu focal/universe riscv64 libhts3 riscv64 1.10.2-3 [328 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8 riscv64 3.8.2-1ubuntu1 [1450 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-dev riscv64 3.8.2-1ubuntu1 [8375 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3-dev riscv64 3.8.2-0ubuntu2 [7236 B] Get:82 http://ftpmaster.internal/ubuntu focal/universe riscv64 python3-atomicwrites all 1.1.5-2build1 [7016 B] Get:83 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-attr all 19.3.0-2 [33.9 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu1 [207 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8-dev riscv64 3.8.2-1ubuntu1 [519 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-dev riscv64 3.8.2-0ubuntu2 [1216 B] Get:87 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-more-itertools all 4.2.0-1build1 [39.4 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-zipp all 1.0.0-1 [5312 B] Get:89 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-importlib-metadata all 1.5.0-1 [9992 B] Get:90 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-markupsafe riscv64 1.1.0-1build2 [13.4 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-jinja2 all 2.10.1-2 [95.5 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-pyparsing all 2.4.6-1 [61.3 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-packaging all 20.3-1 [26.8 kB] Get:94 http://ftpmaster.internal/ubuntu focal/universe riscv64 python3-pluggy all 0.13.0-2 [18.4 kB] Get:95 http://ftpmaster.internal/ubuntu focal/universe riscv64 python3-py all 1.8.1-1 [65.4 kB] Get:96 http://ftpmaster.internal/ubuntu focal/universe riscv64 python3-pysam riscv64 0.15.4+ds-1build1 [1686 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-wcwidth all 0.1.8+dfsg1-3 [17.4 kB] Get:98 http://ftpmaster.internal/ubuntu focal/universe riscv64 python3-pytest all 4.6.9-1 [178 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-setuptools all 45.2.0-1 [330 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.2 MB in 8s (4752 kB/s) Selecting previously unselected package libpython3.8-minimal:riscv64. (Reading database ... 9816 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2-1ubuntu1_riscv64.deb ... Unpacking libpython3.8-minimal:riscv64 (3.8.2-1ubuntu1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.2.9-1build1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2-1ubuntu1_riscv64.deb ... Unpacking python3.8-minimal (3.8.2-1ubuntu1) ... Setting up libpython3.8-minimal:riscv64 (3.8.2-1ubuntu1) ... Setting up libexpat1:riscv64 (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.2-1ubuntu1) ... Selecting previously unselected package python3-minimal. (Reading database ... 10107 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-0ubuntu2_riscv64.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... 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Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 6 20:54:07 UTC 2020. Universal Time is now: Mon Apr 6 20:54:07 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:riscv64 (2.2.9-1build1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libk5crypto3:riscv64 (1.17-6ubuntu4) ... Setting up libsasl2-2:riscv64 (2.1.27+dfsg-2) ... Setting up libroken18-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu1) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:riscv64 (1.17-6ubuntu4) ... Setting up libmpdec2:riscv64 (2.4.2-3) ... Setting up libpython3.8-stdlib:riscv64 (3.8.2-1ubuntu1) ... Setting up python3.8 (3.8.2-1ubuntu1) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up libpython3-stdlib:riscv64 (3.8.2-0ubuntu2) ... Setting up libheimbase1-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-14) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up libasn1-8-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up python3-markupsafe (1.1.0-1build2) ... Setting up libhcrypto4-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up python3-atomicwrites (1.1.5-2build1) ... Setting up python3-six (1.14.0-2) ... Setting up libwind0-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up python3-jinja2 (2.10.1-2) ... Setting up python3-wcwidth (0.1.8+dfsg1-3) ... Setting up python3-pyparsing (2.4.6-1) ... Setting up libpython3.8:riscv64 (3.8.2-1ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:riscv64 (1.17-6ubuntu4) ... Setting up cython3 (0.29.14-0.1ubuntu3) ... Setting up libssh-4:riscv64 (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up python3-lib2to3 (3.8.2-1ubuntu1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-4build1) ... Setting up python3-pkg-resources (45.2.0-1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.2-1ubuntu1) ... Setting up dh-python (4.20200315) ... Setting up python3-more-itertools (4.2.0-1build1) ... Setting up python3-attr (19.3.0-2) ... Setting up python3-setuptools (45.2.0-1) ... Setting up python3-py (1.8.1-1) ... Setting up libhx509-5-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up python3-zipp (1.0.0-1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-packaging (20.3-1) ... Setting up libpython3.8-dev:riscv64 (3.8.2-1ubuntu1) ... Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up python3.8-dev (3.8.2-1ubuntu1) ... Setting up libkrb5-26-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libpython3-dev:riscv64 (3.8.2-0ubuntu2) ... Setting up python3-importlib-metadata (1.5.0-1) ... Setting up libheimntlm0-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgssapi3-heimdal:riscv64 (7.7.0+dfsg-1ubuntu1) ... Setting up python3-dev (3.8.2-0ubuntu2) ... Setting up python3-pluggy (0.13.0-2) ... Setting up python3-pytest (4.6.9-1) ... Setting up po-debconf (1.0.21) ... Setting up libldap-2.4-2:riscv64 (2.4.49+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:riscv64 (7.68.0-1ubuntu1) ... Setting up libhts3:riscv64 (1.10.2-3) ... Setting up python3-pysam (0.15.4+ds-1build1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 (riscv64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-10ubuntu1 gcc-9_9.3.0-10ubuntu1 libc6-dev_2.31-0ubuntu7 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 linux-libc-dev_5.4.0-21.25 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.1ubuntu1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-riscv64-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-10ubuntu1 cython3_0.29.14-0.1ubuntu3 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-10ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200324-1ubuntu1 gcc-8-base_8.4.0-3ubuntu2 gcc-9_9.3.0-10ubuntu1 gcc-9-base_9.3.0-10ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg6.0_2.0.1ubuntu1 libarchive-zip-perl_1.67-2 libasn1-8-heimdal_7.7.0+dfsg-1ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200324-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblkid1_2.34-0.1ubuntu8 libbrotli1_1.0.7-6build1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu7 libc-dev-bin_2.31-0ubuntu7 libc6_2.31-0ubuntu7 libc6-dev_2.31-0ubuntu7 libcap-ng0_0.7.9-2.1build1 libcc1-0_10-20200324-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libcurl3-gnutls_7.68.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.10ubuntu1 libdeflate0_1.5-3 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libexpat1-dev_2.2.9-1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-10ubuntu1 libgcc-s1_10-20200324-1ubuntu1 libgcc1_1:10-20200324-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200324-1ubuntu1 libgpg-error0_1.37-1 libgpm2_1.20.7-5 libgssapi-krb5-2_1.17-6ubuntu4 libgssapi3-heimdal_7.7.0+dfsg-1ubuntu1 libhcrypto4-heimdal_7.7.0+dfsg-1ubuntu1 libheimbase1-heimdal_7.7.0+dfsg-1ubuntu1 libheimntlm0-heimdal_7.7.0+dfsg-1ubuntu1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-3 libhx509-5-heimdal_7.7.0+dfsg-1ubuntu1 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6-6ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-1ubuntu1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 libldap-2.4-2_2.4.49+dfsg-2ubuntu1 libldap-common_2.4.49+dfsg-2ubuntu1 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-0ubuntu2 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1build1 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libpsl5_0.21.0-1ubuntu1 libpython3-dev_3.8.2-0ubuntu2 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8_3.8.2-1ubuntu1 libpython3.8-dev_3.8.2-1ubuntu1 libpython3.8-minimal_3.8.2-1ubuntu1 libpython3.8-stdlib_3.8.2-1ubuntu1 libreadline8_8.0-4 libroken18-heimdal_7.7.0+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssh-4_0.9.3-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu3 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-14 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libwind0-heimdal_7.7.0+dfsg-1ubuntu1 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-21.25 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu4 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu4 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 python3_3.8.2-0ubuntu2 python3-atomicwrites_1.1.5-2build1 python3-attr_19.3.0-2 python3-dev_3.8.2-0ubuntu2 python3-distutils_3.8.2-1ubuntu1 python3-importlib-metadata_1.5.0-1 python3-jinja2_2.10.1-2 python3-lib2to3_3.8.2-1ubuntu1 python3-markupsafe_1.1.0-1build2 python3-minimal_3.8.2-0ubuntu2 python3-more-itertools_4.2.0-1build1 python3-packaging_20.3-1 python3-pkg-resources_45.2.0-1 python3-pluggy_0.13.0-2 python3-py_1.8.1-1 python3-pyparsing_2.4.6-1 python3-pysam_0.15.4+ds-1build1 python3-pytest_4.6.9-1 python3-setuptools_45.2.0-1 python3-six_1.14.0-2 python3-wcwidth_0.1.8+dfsg1-3 python3-zipp_1.0.0-1 python3.8_3.8.2-1ubuntu1 python3.8-dev_3.8.2-1ubuntu1 python3.8-minimal_3.8.2-1ubuntu1 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: atropos Binary: atropos Architecture: any Version: 1.1.24+dfsg-1build1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jdidion/atropos Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/atropos Vcs-Git: https://salsa.debian.org/med-team/atropos.git Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pytest , python3-jinja2 , python3-pysam Package-List: atropos deb science optional arch=any Checksums-Sha1: 9a9c210d508c3ac533bb4c347c5956beebd942d0 3115668 atropos_1.1.24+dfsg.orig.tar.xz 5f38874c4c3e001c55ef5e741100d2032e6bc938 5132 atropos_1.1.24+dfsg-1build1.debian.tar.xz Checksums-Sha256: 9c54a613fb52ee2eb08ed622a55f53fcb68122aa73fab4a3ec5c9a6614201c18 3115668 atropos_1.1.24+dfsg.orig.tar.xz caf43e5def0c6288a19430c6a1bb5400b280bf167b538484acd861523729228f 5132 atropos_1.1.24+dfsg-1build1.debian.tar.xz Files: 8fd554d35303afafa28d5f95d796f452 3115668 atropos_1.1.24+dfsg.orig.tar.xz bbf4b0618fc410aee0445de8f2cfc83b 5132 atropos_1.1.24+dfsg-1build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE1WVxuIqLuvFAv2PWvX6qYHePpvUFAl4rynoQHGRva29AdWJ1 bnR1LmNvbQAKCRC9fqpgd4+m9YQzEACxfCd2BnNpl8likPbg6zRmmuxJQNNxYyfv 00Zrx7Tb/3udmrJAj7HrdwOQ0+fQ5vtSiYlaj/L2mEUHsyBeL0sbwr8s0d0Z4Y48 PSw2ic7VOuYWFesJQ/cHnQoSfkg0e8M2x+uuJsOdGFTdh9G3rj+IgRz2KVLYmTVy mbwnoASZfm5xyAp69IFFy4zbKiZqQw1KymUXhUQT/w6kwUM0apc4AkJKxS69+pYA 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space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19100173 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19100173 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19100173 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.24+dfsg-1build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.8/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8/build/tests copying tests/__init__.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_commands.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_seqio.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_qualtrim.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_filters.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_trim.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_modifiers.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/utils.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_multicore.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_paired.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_colorspace.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_xopen.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_align.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_adapters.py -> /<>/.pybuild/cpython3_3.8/build/tests copying tests/test_atropos.py -> /<>/.pybuild/cpython3_3.8/build/tests creating /<>/.pybuild/cpython3_3.8/build/atropos copying atropos/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos copying atropos/_version.py -> /<>/.pybuild/cpython3_3.8/build/atropos creating /<>/.pybuild/cpython3_3.8/build/atropos/commands copying atropos/commands/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands copying atropos/commands/stats.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands copying atropos/commands/cli.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands copying atropos/commands/multicore.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands copying atropos/commands/base.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands copying atropos/commands/reports.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands copying atropos/commands/legacy_report.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands creating /<>/.pybuild/cpython3_3.8/build/atropos/align copying atropos/align/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/align creating /<>/.pybuild/cpython3_3.8/build/atropos/io copying atropos/io/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/io copying atropos/io/seqio.py -> /<>/.pybuild/cpython3_3.8/build/atropos/io copying atropos/io/progress.py -> /<>/.pybuild/cpython3_3.8/build/atropos/io copying atropos/io/compression.py -> /<>/.pybuild/cpython3_3.8/build/atropos/io creating /<>/.pybuild/cpython3_3.8/build/atropos/adapters copying atropos/adapters/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/adapters creating /<>/.pybuild/cpython3_3.8/build/atropos/util copying atropos/util/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/util copying atropos/util/colorspace.py -> /<>/.pybuild/cpython3_3.8/build/atropos/util creating /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim creating /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc creating /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect creating /<>/.pybuild/cpython3_3.8/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/error copying atropos/commands/error/cli.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/error copying atropos/commands/error/reports.py -> /<>/.pybuild/cpython3_3.8/build/atropos/commands/error copying atropos/adapters/sequencing_adapters.fa -> /<>/.pybuild/cpython3_3.8/build/atropos/adapters UPDATING /<>/.pybuild/cpython3_3.8/build/atropos/_version.py set /<>/.pybuild/cpython3_3.8/build/atropos/_version.py to '1.1.24' running build_ext Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build creating build/temp.linux-riscv64-3.8 creating build/temp.linux-riscv64-3.8/atropos creating build/temp.linux-riscv64-3.8/atropos/align riscv64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c atropos/align/_align.c -o build/temp.linux-riscv64-3.8/atropos/align/_align.o riscv64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-3.8/atropos/align/_align.o -o /<>/.pybuild/cpython3_3.8/build/atropos/align/_align.cpython-38-riscv64-linux-gnu.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-riscv64-3.8/atropos/commands creating build/temp.linux-riscv64-3.8/atropos/commands/trim riscv64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-riscv64-3.8/atropos/commands/trim/_qualtrim.o riscv64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-3.8/atropos/commands/trim/_qualtrim.o -o /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/_qualtrim.cpython-38-riscv64-linux-gnu.so building 'atropos.io._seqio' extension creating build/temp.linux-riscv64-3.8/atropos/io riscv64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c atropos/io/_seqio.c -o build/temp.linux-riscv64-3.8/atropos/io/_seqio.o riscv64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-3.8/atropos/io/_seqio.o -o /<>/.pybuild/cpython3_3.8/build/atropos/io/_seqio.cpython-38-riscv64-linux-gnu.so running build_scripts creating build/scripts-3.8 copying and adjusting bin/atropos -> build/scripts-3.8 changing mode of build/scripts-3.8/atropos from 644 to 755 /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/atropos/align/_align.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/atropos/commands/trim/_qualtrim.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/atropos/io/_seqio.pyx tree = Parsing.p_module(s, pxd, full_module_name) debian/rules override_dh_auto_test make[1]: Entering directory '/<>' \ dh_auto_test -- --before-test="ln -s /<>/tests/cut {build_dir}/tests && ln -s /<>/tests/data {build_dir}/tests" I: pybuild pybuild:284: ln -s /<>/tests/cut /<>/.pybuild/cpython3_3.8/build/tests && ln -s /<>/tests/data /<>/.pybuild/cpython3_3.8/build/tests I: pybuild base:217: cd /<>/.pybuild/cpython3_3.8/build; python3.8 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.8.2, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 rootdir: /<>, inifile: pytest.ini collected 223 items tests/test_adapters.py ........ [ 3%] tests/test_align.py ................ [ 10%] tests/test_atropos.py .................................................. [ 33%] ............................s [ 46%] tests/test_colorspace.py ................. [ 53%] tests/test_commands.py . [ 54%] tests/test_filters.py .. [ 55%] tests/test_modifiers.py .................... [ 64%] tests/test_multicore.py ..... [ 66%] tests/test_paired.py ................................. [ 81%] tests/test_qualtrim.py . [ 81%] tests/test_seqio.py ................................... [ 97%] tests/test_trim.py .. [ 98%] tests/test_xopen.py .... [100%] =============================== warnings summary =============================== atropos/util/__init__.py:3 atropos/util/__init__.py:3 /<>/.pybuild/cpython3_3.8/build/atropos/util/__init__.py:3: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working from collections import OrderedDict, Iterable, Sequence -- Docs: https://docs.pytest.org/en/latest/warnings.html ============= 222 passed, 1 skipped, 2 warnings in 110.16 seconds ============== make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/atropos running install running build running build_py UPDATING /<>/.pybuild/cpython3_3.8/build/atropos/_version.py set /<>/.pybuild/cpython3_3.8/build/atropos/_version.py to '1.1.24' running build_ext running build_scripts running install_lib creating /<>/debian/atropos/usr creating /<>/debian/atropos/usr/lib creating /<>/debian/atropos/usr/lib/python3.8 creating /<>/debian/atropos/usr/lib/python3.8/dist-packages creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_commands.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_seqio.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_qualtrim.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_filters.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_trim.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/paired.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/solid.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/454.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/paired_bis_adapter.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/nextseq.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/rest.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/withplus.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/bad_bases.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/small.myownextension -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/anchored_no_indels.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/interleaved.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/solid5p.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/E3M.qual -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/wildcard_adapter.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/toolong.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/dos.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/small.fastq.xz -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/no_indels.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/simple.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/anchored.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/tooshort.noprimer.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/solid5p.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/trimN3.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/overlapb.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/small.fastq.bz2 -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/insert.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/insert.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/solid.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/solid.csfasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/suffix-adapter.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/multiblock.fastq.gz -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/linked.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/maxn.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/paired_bis_insert.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/big.2.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/rest.txt -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/paired_bis_insert.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/wildcardN.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/highq.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/polya.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/illumina64.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/s_1_sequence.txt.gz -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/sra.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/twoadapters.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/big.1.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/restfront.txt -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/paired_bis_adapter.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/simple.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/E3M.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/anchored-back.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/trimN5.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/lowq.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/issue46.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/tooshort.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/issue68.1.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/plus.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/anywhere_repeat.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/overlapa.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/back_repeat.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/small.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/illumina.fastq.gz -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/issue68.2.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/back_repeat.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/empty.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/illumina5.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/small.fastq.gz -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/wildcard.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/lowqual.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/adapter.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/example.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/prefix-adapter.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/solid.qual -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/paired.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data copying /<>/.pybuild/cpython3_3.8/build/tests/data/lengths.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/data creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_commands.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_seqio.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_align.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/utils.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_multicore.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_filters.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_colorspace.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_adapters.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_atropos.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_paired.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_modifiers.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_trim.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_qualtrim.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/__pycache__/test_xopen.cpython-38-PYTEST.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/tests/test_modifiers.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/utils.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_multicore.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_paired.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_colorspace.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/testtmp copying /<>/.pybuild/cpython3_3.8/build/tests/testtmp/truncated.gz -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/testtmp copying /<>/.pybuild/cpython3_3.8/build/tests/testtmp/tmp2-out.2.0.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/testtmp copying /<>/.pybuild/cpython3_3.8/build/tests/testtmp/tmp1-out.1.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/testtmp copying /<>/.pybuild/cpython3_3.8/build/tests/testtmp/tmp2-out.2.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/testtmp copying /<>/.pybuild/cpython3_3.8/build/tests/testtmp/tmp1-out.1.0.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/testtmp copying /<>/.pybuild/cpython3_3.8/build/tests/test_xopen.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_align.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/twoadapters.second.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/454.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/nextseq.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/pairedu.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/rest.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid5p-anchored.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/anchored_no_indels.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/interleaved.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/illumina.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/small.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_adapter.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/unconditional-front.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid5p.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/wildcard_adapter.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/dos.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/no_indels.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/anchored.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/pairedq.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/twoadapters.unknown.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-filterboth_adapter.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/SRR2040662_trimmed.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired.m14.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid5p.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/trimN3.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solidmaq.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/overlapb.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-separate.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid-no-zerocap.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-too-short.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/small_mincut3.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/s_1_sequence.txt -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/insert.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/insert.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid5p-anchored.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis1_adapter.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/maxn1.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-too-short.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/maxn0.4.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/linked.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_adapter.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis1_adapter.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/suffix.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-filterboth_insert.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/restfront.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis1_insert.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis2_insert.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid5p-anchored.notrim.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/wildcardN.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/discard.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/highq.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/maxlen.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/polya.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/illumina64.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-filterboth.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/pairedq.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-trimmed.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/small.trimmed.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/sra.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/twoadapters.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/small_mincut2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/minlen.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solidqual.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solid5p-anchored.notrim.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-onlyA.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-separate.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/anchored-back.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-m27.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/illumina5.info.txt -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/maxn0.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis2_adapter.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/small.untrimmed.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/minlen.noprimer.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-filterboth_adapter.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/lowercase.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/trimN5.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired.m14.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/lowq.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/issue46.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis1_insert.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/maxn2.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/discard-untrimmed.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/examplefront.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-untrimmed.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_insert.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/issue68.1.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/plus.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/anywhere_repeat.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/unconditional-both.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-trimmed.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/small_mincut1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/maxn0.2.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/unconditional-back.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/overlapa.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/back_repeat.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-filterboth.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/illumina.info.txt -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/small.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/issue68.2.fq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/back_repeat.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/pairedu.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/wildcard_adapter_anywhere.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-m27.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_insert.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/empty.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/illumina5.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/wildcard.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/solidbfast.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/twoadapters.first.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis2_adapter.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-filterboth_insert.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/lowqual.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired_bis2_insert.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/stripped.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/anchored_no_indels_wildcard.fasta -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/example.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-untrimmed.2.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired-onlyA.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/paired.1.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/cut/no-trim.fastq -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/cut copying /<>/.pybuild/cpython3_3.8/build/tests/test_adapters.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/tests/test_atropos.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests copying /<>/.pybuild/cpython3_3.8/build/.adapters -> /<>/debian/atropos/usr/lib/python3.8/dist-packages creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos copying /<>/.pybuild/cpython3_3.8/build/atropos/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/filters.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/qualtrim.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/multicore.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/cli.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/reports.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/filters.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/modifiers.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/__pycache__/writers.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/cli.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/writers.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/multicore.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/qualtrim.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/_qualtrim.cpython-38-riscv64-linux-gnu.so -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/modifiers.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/trim/reports.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc/__pycache__/cli.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc/cli.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/qc/reports.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__pycache__/legacy_report.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__pycache__/multicore.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__pycache__/cli.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__pycache__/stats.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__pycache__/reports.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__pycache__/base.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/stats.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/cli.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect/__pycache__/cli.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect/cli.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/detect/reports.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/multicore.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/error/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/error/__pycache__/cli.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/error/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/error/cli.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/error/reports.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/base.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/reports.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands copying /<>/.pybuild/cpython3_3.8/build/atropos/commands/legacy_report.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands copying /<>/.pybuild/cpython3_3.8/build/atropos/_version.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/__pycache__/_version.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/__pycache__ creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/align copying /<>/.pybuild/cpython3_3.8/build/atropos/align/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/align creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/align/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/align/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/align/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/align/_align.cpython-38-riscv64-linux-gnu.so -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/align creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io copying /<>/.pybuild/cpython3_3.8/build/atropos/io/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io copying /<>/.pybuild/cpython3_3.8/build/atropos/io/seqio.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io copying /<>/.pybuild/cpython3_3.8/build/atropos/io/progress.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io copying /<>/.pybuild/cpython3_3.8/build/atropos/io/compression.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/io/__pycache__/compression.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/io/__pycache__/seqio.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/io/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/io/_seqio.cpython-38-riscv64-linux-gnu.so -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/adapters copying /<>/.pybuild/cpython3_3.8/build/atropos/adapters/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/adapters creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/adapters/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/adapters/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/adapters/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/adapters/sequencing_adapters.fa -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/adapters creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util copying /<>/.pybuild/cpython3_3.8/build/atropos/util/__init__.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util copying /<>/.pybuild/cpython3_3.8/build/atropos/util/colorspace.py -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util creating /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/util/__pycache__/colorspace.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util/__pycache__ copying /<>/.pybuild/cpython3_3.8/build/atropos/util/__pycache__/__init__.cpython-38.pyc -> /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util/__pycache__ byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_commands.py to test_commands.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_seqio.py to test_seqio.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_filters.py to test_filters.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_trim.py to test_trim.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/utils.py to utils.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_multicore.py to test_multicore.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_paired.py to test_paired.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_xopen.py to test_xopen.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_align.py to test_align.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_adapters.py to test_adapters.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/tests/test_atropos.py to test_atropos.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/filters.py to filters.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/cli.py to cli.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/writers.py to writers.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/trim/reports.py to reports.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc/cli.py to cli.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/qc/reports.py to reports.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/stats.py to stats.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/cli.py to cli.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect/cli.py to cli.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/detect/reports.py to reports.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/multicore.py to multicore.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error/cli.py to cli.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/error/reports.py to reports.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/base.py to base.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/reports.py to reports.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/_version.py to _version.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/align/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/seqio.py to seqio.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/progress.py to progress.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/io/compression.py to compression.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/adapters/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos/util/colorspace.py to colorspace.cpython-38.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /<>/debian/atropos/usr/lib/python3.8/dist-packages/atropos-1.1.24.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/atropos/usr/bin copying build/scripts-3.8/atropos -> /<>/debian/atropos/usr/bin changing mode of /<>/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package atropos: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package atropos: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing atropos (in debian/atropos); do_strip: , oemstrip: pkgstriptranslations: processing atropos-dbgsym (in debian/.debhelper/atropos/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/atropos/DEBIAN/control, package atropos, directory debian/atropos pkgstripfiles: processing control file: debian/.debhelper/atropos/dbgsym-root/DEBIAN/control, package atropos-dbgsym, directory debian/.debhelper/atropos/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package atropos ... dpkg-deb: building package 'atropos-dbgsym' in 'debian/.debhelper/scratch-space/build-atropos/atropos-dbgsym_1.1.24+dfsg-1build1_riscv64.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'atropos' in '../atropos_1.1.24+dfsg-1build1_riscv64.deb'. Renaming atropos-dbgsym_1.1.24+dfsg-1build1_riscv64.deb to atropos-dbgsym_1.1.24+dfsg-1build1_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../atropos_1.1.24+dfsg-1build1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-06T21:04:39Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ atropos_1.1.24+dfsg-1build1_riscv64.changes: -------------------------------------------- Format: 1.8 Date: Sat, 25 Jan 2020 04:30:09 +0000 Source: atropos Binary: atropos Architecture: riscv64 Version: 1.1.24+dfsg-1build1 Distribution: focal Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: atropos - NGS read trimming tool that is specific, sensitive, and speedy Changes: atropos (1.1.24+dfsg-1build1) focal; urgency=medium . * No-change rebuild to build with python3.8. 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/<>/atropos_1.1.24+dfsg-1build1_riscv64.changes.new could not be renamed to /<>/atropos_1.1.24+dfsg-1build1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: atropos Binary: atropos Architecture: riscv64 Version: 1.1.24+dfsg-1build1 Checksums-Md5: 61d4f6a6ff9f335e1e9fb6ae4e02d8cf 521036 atropos-dbgsym_1.1.24+dfsg-1build1_riscv64.ddeb e60c1cfc6d28ee0e8c9b75476d74b389 202568 atropos_1.1.24+dfsg-1build1_riscv64.deb Checksums-Sha1: 83ba318e2150aba812554ac2b4bb12a7976e6677 521036 atropos-dbgsym_1.1.24+dfsg-1build1_riscv64.ddeb bbbeb42424bbc1bf50c68608cbf4027d95e453c7 202568 atropos_1.1.24+dfsg-1build1_riscv64.deb Checksums-Sha256: 69f2f520f6ea6c8f7e815f942835b8634a9029c72c94182f8514d23e09528ec8 521036 atropos-dbgsym_1.1.24+dfsg-1build1_riscv64.ddeb 7edfd340efe5cd326073d61797568fe51d13e6117c2895e4582846155d6c9772 202568 atropos_1.1.24+dfsg-1build1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Mon, 06 Apr 2020 21:04:33 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu4), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-5ubuntu1), binutils-common (= 2.34-5ubuntu1), binutils-riscv64-linux-gnu (= 2.34-5ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu8), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-10ubuntu1), cython3 (= 0.29.14-0.1ubuntu3), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.10ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-python (= 4.20200315), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-10ubuntu1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200324-1ubuntu1), gcc-9 (= 9.3.0-10ubuntu1), gcc-9-base (= 9.3.0-10ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libasn1-8-heimdal (= 7.7.0+dfsg-1ubuntu1), libatomic1 (= 10-20200324-1ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-5ubuntu1), libblkid1 (= 2.34-0.1ubuntu8), libbrotli1 (= 1.0.7-6build1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu7), libc-dev-bin (= 2.31-0ubuntu7), libc6 (= 2.31-0ubuntu7), libc6-dev (= 2.31-0ubuntu7), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10-20200324-1ubuntu1), libcom-err2 (= 1.45.5-2ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-5ubuntu1), libctf0 (= 2.34-5ubuntu1), libcurl3-gnutls (= 7.68.0-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 12.10ubuntu1), libdeflate0 (= 1.5-3), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libexpat1 (= 2.2.9-1build1), libexpat1-dev (= 2.2.9-1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-9-dev (= 9.3.0-10ubuntu1), libgcc-s1 (= 10-20200324-1ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.1-1), libgmp10 (= 2:6.2.0+dfsg-4), libgnutls30 (= 3.6.13-2ubuntu1), libgomp1 (= 10-20200324-1ubuntu1), libgpg-error0 (= 1.37-1), libgssapi-krb5-2 (= 1.17-6ubuntu4), libgssapi3-heimdal (= 7.7.0+dfsg-1ubuntu1), libhcrypto4-heimdal (= 7.7.0+dfsg-1ubuntu1), libheimbase1-heimdal (= 7.7.0+dfsg-1ubuntu1), libheimntlm0-heimdal (= 7.7.0+dfsg-1ubuntu1), libhogweed5 (= 3.5.1+really3.5.1-2), libhts3 (= 1.10.2-3), libhx509-5-heimdal (= 7.7.0+dfsg-1ubuntu1), libicu66 (= 66.1-2ubuntu2), libidn2-0 (= 2.2.0-2), libisl22 (= 0.22.1-1), libk5crypto3 (= 1.17-6ubuntu4), libkeyutils1 (= 1.6-6ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-1ubuntu1), libkrb5-3 (= 1.17-6ubuntu4), libkrb5support0 (= 1.17-6ubuntu4), libldap-2.4-2 (= 2.4.49+dfsg-2ubuntu1), libldap-common (= 2.4.49+dfsg-2ubuntu1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1ubuntu8), libmpc3 (= 1.1.0-1), libmpdec2 (= 2.4.2-3), libmpfr6 (= 4.0.2-1), libncursesw6 (= 6.2-0ubuntu2), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1build1), libp11-kit0 (= 0.23.20-1build1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libperl5.30 (= 5.30.0-9build1), libpipeline1 (= 1.5.2-2build1), libpsl5 (= 0.21.0-1ubuntu1), libpython3-dev (= 3.8.2-0ubuntu2), libpython3-stdlib (= 3.8.2-0ubuntu2), libpython3.8 (= 3.8.2-1ubuntu1), libpython3.8-dev (= 3.8.2-1ubuntu1), libpython3.8-minimal (= 3.8.2-1ubuntu1), libpython3.8-stdlib (= 3.8.2-1ubuntu1), libreadline8 (= 8.0-4), libroken18-heimdal (= 7.7.0+dfsg-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1ubuntu8), libsqlite3-0 (= 3.31.1-4), libssh-4 (= 0.9.3-2ubuntu1), libssl1.1 (= 1.1.1d-2ubuntu6), libstdc++-9-dev (= 9.3.0-10ubuntu1), libstdc++6 (= 10-20200324-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.2-1ubuntu3), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2-0ubuntu2), libtool (= 2.4.6-14), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.2-1ubuntu3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu8), libwind0-heimdal (= 7.7.0+dfsg-1ubuntu1), libxml2 (= 2.9.10+dfsg-4build1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-21.25), login (= 1:4.8.1-1ubuntu4), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), mime-support (= 3.64ubuntu1), ncurses-base (= 6.2-0ubuntu2), ncurses-bin (= 6.2-0ubuntu2), patch (= 2.7.6-6), perl (= 5.30.0-9build1), perl-base (= 5.30.0-9build1), perl-modules-5.30 (= 5.30.0-9build1), po-debconf (= 1.0.21), python3 (= 3.8.2-0ubuntu2), python3-atomicwrites (= 1.1.5-2build1), python3-attr (= 19.3.0-2), python3-dev (= 3.8.2-0ubuntu2), python3-distutils (= 3.8.2-1ubuntu1), python3-importlib-metadata (= 1.5.0-1), python3-jinja2 (= 2.10.1-2), python3-lib2to3 (= 3.8.2-1ubuntu1), python3-markupsafe (= 1.1.0-1build2), python3-minimal (= 3.8.2-0ubuntu2), python3-more-itertools (= 4.2.0-1build1), python3-packaging (= 20.3-1), python3-pkg-resources (= 45.2.0-1), python3-pluggy (= 0.13.0-2), python3-py (= 1.8.1-1), python3-pyparsing (= 2.4.6-1), python3-pysam (= 0.15.4+ds-1build1), python3-pytest (= 4.6.9-1), python3-setuptools (= 45.2.0-1), python3-six (= 1.14.0-2), python3-wcwidth (= 0.1.8+dfsg1-3), python3-zipp (= 1.0.0-1), python3.8 (= 3.8.2-1ubuntu1), python3.8-dev (= 3.8.2-1ubuntu1), python3.8-minimal (= 3.8.2-1ubuntu1), readline-common (= 8.0-4), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2019c-3ubuntu1), util-linux (= 2.34-0.1ubuntu8), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1579926609" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ atropos_1.1.24+dfsg-1build1_riscv64.deb --------------------------------------- new Debian package, version 2.0. size 202568 bytes: control archive=3004 bytes. 2279 bytes, 43 lines control 4298 bytes, 46 lines md5sums 239 bytes, 12 lines * postinst #!/bin/sh 388 bytes, 12 lines * prerm #!/bin/sh Package: atropos Version: 1.1.24+dfsg-1build1 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 800 Depends: libc6 (>= 2.27), cython3, python3 (<< 3.9), python3 (>= 3.8~), python3:any, python3-pysam Recommends: python3-jinja2 Section: science Priority: optional Homepage: https://github.com/jdidion/atropos Description: NGS read trimming tool that is specific, sensitive, and speedy Atropos is tool for specific, sensitive, and speedy trimming of NGS reads. It is a fork of the venerable Cutadapt read trimmer, with the primary improvements being: . 1. Multi-threading support, including an extremely fast "parallel write" mode. 2. Implementation of a new insert alignment-based trimming algorithm for paired-end reads that is substantially more sensitive and specific than the original Cutadapt adapter alignment-based algorithm. This algorithm can also correct mismatches between the overlapping portions of the reads. 3. Options for trimming specific types of data (miRNA, bisulfite-seq). 4. A new command ('detect') that will detect adapter sequences and other potential contaminants. 5. A new command ('error') that will estimate the sequencing error rate, which helps to select the appropriate adapter- and quality- trimming parameter values. 6. A new command ('qc') that generates read statistics similar to FastQC. The trim command can also compute read statistics both before and after trimming (using the '--stats' option). 7. Improved summary reports, including support for serialization formats (JSON, YAML, pickle), support for user-defined templates (via the optional Jinja2 dependency), and integration with MultiQC. 8. The ability to merge overlapping reads (this is experimental and the functionality is limited). 9. The ability to write the summary report and log messages to separate files. 10. The ability to read SAM/BAM files and read/write interleaved FASTQ files. 11. Direct trimming of reads from an SRA accession. 12. A progress bar, and other minor usability enhancements. drwxr-xr-x root/root 0 2020-01-25 04:30 ./ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/bin/ -rwxr-xr-x root/root 517 2020-01-25 04:30 ./usr/bin/atropos drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/lib/ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/lib/python3/dist-packages/atropos-1.1.24.egg-info/ -rw-r--r-- root/root 13774 2020-01-25 04:30 ./usr/lib/python3/dist-packages/atropos-1.1.24.egg-info/PKG-INFO -rw-r--r-- root/root 1 2020-01-25 04:30 ./usr/lib/python3/dist-packages/atropos-1.1.24.egg-info/dependency_links.txt -rw-r--r-- root/root 111 2020-01-25 04:30 ./usr/lib/python3/dist-packages/atropos-1.1.24.egg-info/requires.txt -rw-r--r-- root/root 14 2020-01-25 04:30 ./usr/lib/python3/dist-packages/atropos-1.1.24.egg-info/top_level.txt drwxr-xr-x 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drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/share/ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/share/doc/atropos/ -rw-r--r-- root/root 365 2020-01-25 04:30 ./usr/share/doc/atropos/changelog.Debian.gz -rw-r--r-- root/root 3955 2019-11-30 12:00 ./usr/share/doc/atropos/copyright drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/share/man/ drwxr-xr-x root/root 0 2020-01-25 04:30 ./usr/share/man/man1/ -rw-r--r-- root/root 1095 2020-01-25 04:30 ./usr/share/man/man1/atropos.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 27000 Build-Time: 503 Distribution: focal Host Architecture: riscv64 Install-Time: 282 Job: atropos_1.1.24+dfsg-1build1.dsc Machine Architecture: riscv64 Package: atropos Package-Time: 813 Source-Version: 1.1.24+dfsg-1build1 Space: 27000 Status: successful Version: 1.1.24+dfsg-1build1 -------------------------------------------------------------------------------- Finished at 2020-04-06T21:04:39Z Build needed 00:13:33, 27000k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100173 Scanning for processes to kill in build PACKAGEBUILD-19100173 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100173 Stopping target for build PACKAGEBUILD-19100173 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100173 Removing build PACKAGEBUILD-19100173