Do-release-upgrade repeated failure even with fix from PackageManagerTroubleshootingProcedure
I have performed the fix from the package manager troubleshooting procedure numerous times; it solves the problem for a week before update manager fails to launch again.
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- Ubuntu apt Edit question
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Revision history for this message
|
#1 |
What is the output of:
sudo apt-get update; sudo apt-get -f install
Thanks
Revision history for this message
|
#2 |
Terminal output from update manager package fix is here:
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Traceback (most recent call last):
File "/usr/bin/
with apt.Cache() as cache:
File "/usr/lib/
self.
File "/usr/lib/
self._cache = apt_pkg.
SystemError: E:Encountered a section with no Package: header, E:Problem with MergeList /var/lib/
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cat: /etc/dpkg/
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i386
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[sudo] password for lenovo:
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cat: /etc/apt/apt.conf: No such file or directory
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DISTRIB_ID=Ubuntu
DISTRIB_
DISTRIB_
DISTRIB_
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Linux lenovo-Lenovo-G480 3.13.0-77-generic #121-Ubuntu SMP Wed Jan 20 10:50:42 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
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Reading package lists... Done
Building dependency tree
Reading state information... Done
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Setting up libatomic1:amd64 (4.8.4-
Setting up cpp-4.8 (4.8.4-
Setting up libsystemd-
Setting up libquadmath0:amd64 (4.8.4-
Setting up libdrm2:amd64 (2.4.64-
Setting up libdrm2:i386 (2.4.64-
Setting up libtsan0:amd64 (4.8.4-
Setting up libudev1:amd64 (204-5ubuntu20.18) ...
Setting up libudev1:i386 (204-5ubuntu20.18) ...
Setting up libdrm-
Setting up libdrm-radeon1:i386 (2.4.64-
Setting up libsystemd-
Setting up libsystemd-
Setting up libdrm-
Setting up libdrm-
Setting up libasan0:amd64 (4.8.4-
Setting up libdrm-intel1:amd64 (2.4.64-
Setting up libdrm-intel1:i386 (2.4.64-
Setting up firefox-locale-en (44.0.2+
Setting up udev (204-5ubuntu20.18) ...
udev stop/waiting
udev start/running, process 2921
update-initramfs: deferring update (trigger activated)
Setting up libstdc++6:amd64 (4.8.4-
Setting up libstdc++6:i386 (4.8.4-
Setting up libgomp1:amd64 (4.8.4-
Setting up libitm1:amd64 (4.8.4-
Setting up libgudev-
Setting up systemd-services (204-5ubuntu20.18) ...
Setting up libgcc-
Setting up libpam-
Setting up gir1.2-gudev-1.0 (1:204-
Setting up firefox (44.0.2+
Please restart all running instances of firefox, or you will experience problems.
Setting up gcc-4.8 (4.8.4-
Processing triggers for libc-bin (2.19-0ubuntu6.6) ...
Processing triggers for initramfs-tools (0.103ubuntu4.2) ...
update-initramfs: Generating /boot/initrd.
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Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
linux-
linux-
linux-
linux-
linux-
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
linux-
linux-
linux-
linux-
linux-
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
lenovo@
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
linux-
linux-
linux-
linux-
linux-
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
lenovo@
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages will be REMOVED:
linux-
linux-
linux-
linux-
linux-
0 upgraded, 0 newly installed, 10 to remove and 0 not upgraded.
After this operation, 543 MB disk space will be freed.
Do you want to continue? [Y/n] y
(Reading database ... 938141 files and directories currently installed.)
Removing linux-headers-
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Generating grub configuration file ...
Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported.
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done
Purging configuration files for linux-signed-
Removing linux-image-
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
update-initramfs: Generating /boot/initrd.
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
Generating grub configuration file ...
Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
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Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
done
Purging configuration files for linux-image-
Removing linux-image-
Examining /etc/kernel/
run-parts: executing /etc/kernel/
update-initramfs: Deleting /boot/initrd.
run-parts: executing /etc/kernel/
Generating grub configuration file ...
Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
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Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
done
Purging configuration files for linux-image-
Examining /etc/kernel/
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
Removing linux-signed-
Generating grub configuration file ...
Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
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Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
done
Purging configuration files for linux-signed-
Removing linux-image-
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
update-initramfs: Generating /boot/initrd.
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
Generating grub configuration file ...
Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
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Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
done
Purging configuration files for linux-image-
Removing linux-image-
Examining /etc/kernel/
run-parts: executing /etc/kernel/
update-initramfs: Deleting /boot/initrd.
run-parts: executing /etc/kernel/
Generating grub configuration file ...
Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
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Found initrd image: /boot/initrd.
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Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
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Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
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Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
Found linux image: /boot/vmlinuz-
Found initrd image: /boot/initrd.
done
Purging configuration files for linux-image-
Examining /etc/kernel/
run-parts: executing /etc/kernel/
run-parts: executing /etc/kernel/
lenovo@
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Fetched 32.2 MB in 3min 13s (167 kB/s)
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The following packages will be upgraded:
base-files eog fonts-opensymbol initscripts libc-bin libc-dev-bin libc6
libc6:i386 libc6-dbg libc6-dev libgail-common libgail18 libgcrypt11
libgcrypt11:i386 libgraphite2-3 libgraphite2-3:i386 libgtk2.0-0
libgtk2.0-0:i386 libgtk2.0-bin libgtk2.0-common libhogweed2 libnettle4
libnss3 libnss3:i386 libnss3-1d libnss3-nssdb liboxideqt-
liboxideqtcore0 liboxideqtquick0 libpci3
libreoffice-
libreoffice-
libreoffice-gtk libreoffice-impress libreoffice-math libreoffice-
libreoffice-
libreoffice-
multiarch-support ntpdate oxideqt-
python3-uno samba-common samba-common-bin samba-libs smbclient sysv-rc
sysvinit-utils uno-libs3 ure
61 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 130 MB of archives.
After this operation, 112 kB of additional disk space will be used.
Do you want to continue? [Y/n] y
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Fetched 130 MB in 7min 54s (274 kB/s)
Extracting templates from packages: 100%
Preconfiguring packages ...
(Reading database ... 878854 files and directories currently installed.)
Preparing to unpack .../base-
Unpacking base-files (7.2ubuntu5.4) over (7.2ubuntu5.3) ...
Processing triggers for plymouth-
update-initramfs: deferring update (trigger activated)
Processing triggers for install-info (5.2.0.dfsg.1-2) ...
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lenovo@
/etc/apt/
1 ### THIS FILE IS AUTOMATICALLY CONFIGURED ###
2 # You may comment out this entry, but any other modifications may be lost.
3 # deb http://
/etc/apt/
1 # deb cdrom:[Ubuntu 14.04.1 LTS _Trusty Tahr_ - Release amd64 (20140722.2)]/ trusty main restricted
2
3 # See http://
4 # newer versions of the distribution.
5 deb http://
6 deb-src http://
7
8 ## Major bug fix updates produced after the final release of the
9 ## distribution.
10 deb http://
11 deb-src http://
12
13 ## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu
14 ## team. Also, please note that software in universe WILL NOT receive any
15 ## review or updates from the Ubuntu security team.
16 deb http://
17 deb-src http://
18 deb http://
19 deb-src http://
20
21 ## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu
22 ## team, and may not be under a free licence. Please satisfy yourself as to
23 ## your rights to use the software. Also, please note that software in
24 ## multiverse WILL NOT receive any review or updates from the Ubuntu
25 ## security team.
26 deb http://
27 deb-src http://
28 deb http://
29 deb-src http://
30
31 ## N.B. software from this repository may not have been tested as
32 ## extensively as that contained in the main release, although it includes
33 ## newer versions of some applications which may provide useful features.
34 ## Also, please note that software in backports WILL NOT receive any review
35 ## or updates from the Ubuntu security team.
36
37 deb http://
38 deb-src http://
39 deb http://
40 deb-src http://
41 deb http://
42 deb-src http://
43
44 ## Uncomment the following two lines to add software from Canonical's
45 ## 'partner' repository.
46 ## This software is not part of Ubuntu, but is offered by Canonical and the
47 ## respective vendors as a service to Ubuntu users.
48 deb http://
49 # deb-src http://
50
51 ## This software is not part of Ubuntu, but is offered by third-party
52 ## developers who want to ship their latest software.
53 # deb http://
54 # deb-src http://
lenovo@
lenovo@
Revision history for this message
|
#3 |
Looks fine. May want to run:
sudo apt-get --purge autoremove
As well as getting rid of some of the old kernels to recover the space. Looks to be no issues...
Revision history for this message
|
#4 |
If you get a message like
SystemError: E:Encountered a section with no Package: header, E:Problem with MergeList /var/lib/
you need not run the full troubleshooting procedure, but deleting the offending files should be sufficient to bring the package management system back into operations.
In this case
sudo rm /var/lib/
(with the file name as shown in the error message)
Revision history for this message
|
#5 |
Output of sudo apt-get update; sudo apt-get -f install is:
lenovo@
[sudo] password for lenovo:
Ign http://
Ign http://
Get:1 http://
Get:2 http://
Hit http://
Get:3 http://
Get:4 http://
Get:5 http://
Get:6 http://
Hit http://
Get:7 http://
Get:8 http://
Get:9 http://
Get:10 http://
Get:11 http://
Get:12 http://
Get:13 http://
Get:14 http://
Get:15 http://
Get:16 http://
Get:17 http://
Get:18 http://
Get:19 http://
Get:20 http://
Get:21 http://
Get:22 http://
Get:23 http://
Get:24 http://
Get:25 http://
Get:26 http://
Get:27 http://
Get:28 http://
Get:29 http://
Get:30 http://
Get:31 http://
Get:32 http://
Get:33 http://
Get:34 http://
Get:35 http://
Get:36 http://
Get:37 http://
Get:38 http://
Get:39 http://
Get:40 http://
Get:41 http://
Get:42 http://
Get:43 http://
Get:44 http://
Get:45 http://
Get:46 http://
Get:47 http://
Get:48 http://
Get:49 http://
Get:50 http://
Get:51 http://
Hit http://
Hit http://
Hit http://
Hit http://
Ign http://
Ign http://
Ign http://
Ign http://
Fetched 27.2 MB in 3min 35s (126 kB/s)
Reading package lists... Done
Reading package lists... Done
Building dependency tree
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
lenovo@
Revision history for this message
|
#6 |
This output confirms that the packages on your system are up-to-date.
There is on additional remark to your system:
You have more than two dozen different versions of the kernel packages installed.
Normally you need only two, everything else is waste of resources.
The command "sudo apt-get --purge autoremove" was already executed during the package management troubleshooting procedure, but apparently has not cleaned up the old kernels (there is a know bug, that in some cases this does not correctly work).
What is the output of the command
apt-mark showmanual | egrep linux-[his]
Can you help with this problem?
Provide an answer of your own, or ask Phil Durham for more information if necessary.