I updated Mysql automatically as prompted and was told I had broken packages

Asked by David Wyllie

I have followed the online instructions. Below is the output.

dwyllie@dwyllie-X8DA3:/media/bigdisk0/dwyllie$ cd ~
dwyllie@dwyllie-X8DA3:~$
dwyllie@dwyllie-X8DA3:~$ ubuntu-support-status
Support status summary of 'dwyllie-X8DA3':

You have 4 packages (0.2%) supported until May 2015 (9m)
You have 61 packages (3.0%) supported until February 2015 (9m)
You have 1867 packages (92.0%) supported until May 2019 (5y)
You have 40 packages (2.0%) supported until May 2017 (3y)

You have 1 packages (0.0%) that can not/no longer be downloaded
You have 57 packages (2.8%) that are unsupported

Run with --show-unsupported, --show-supported or --show-all to see more details
dwyllie@dwyllie-X8DA3:~$ cat /etc/dpkg/dpkg.cfg.d/multiarch
cat: /etc/dpkg/dpkg.cfg.d/multiarch: No such file or directory
dwyllie@dwyllie-X8DA3:~$ dpkg --print-foreign-architectures
i386
dwyllie@dwyllie-X8DA3:~$ sudo grep -R proxy /etc/apt/*
[sudo] password for dwyllie:
dwyllie@dwyllie-X8DA3:~$ grep proxy /etc/environment
dwyllie@dwyllie-X8DA3:~$ echo $http_proxy

dwyllie@dwyllie-X8DA3:~$ echo $ftp_proxy

dwyllie@dwyllie-X8DA3:~$ grep proxy /etc/bash.bashrc
dwyllie@dwyllie-X8DA3:~$ grep proxy ~/.bashrc
dwyllie@dwyllie-X8DA3:~$ cat /etc/apt/apt.conf
cat: /etc/apt/apt.conf: No such file or directory
dwyllie@dwyllie-X8DA3:~$ sudo fuser -vvv /var/lib/dpkg/lock
dwyllie@dwyllie-X8DA3:~$ sudo fuser -vvv /var/cache/apt/archives/lock
dwyllie@dwyllie-X8DA3:~$ cat /etc/lsb-release
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=14.04
DISTRIB_CODENAME=trusty
DISTRIB_DESCRIPTION="Ubuntu 14.04.1 LTS"
dwyllie@dwyllie-X8DA3:~$ uname -a
Linux dwyllie-X8DA3 3.13.0-32-generic #57-Ubuntu SMP Tue Jul 15 03:51:08 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux
dwyllie@dwyllie-X8DA3:~$ sudo rm /var/lib/apt/lists/lock
dwyllie@dwyllie-X8DA3:~$ sudo rm /var/cache/apt/archives/lock
dwyllie@dwyllie-X8DA3:~$ sudo rm /var/lib/dpkg/lock
dwyllie@dwyllie-X8DA3:~$ sudo cp -arf /var/lib/dpkg /var/lib/dpkg.backup
dwyllie@dwyllie-X8DA3:~$ sudo mv /var/lib/dpkg/status /var/lib/dpkg/status-bad
dwyllie@dwyllie-X8DA3:~$ sudo cp /var/lib/dpkg/status-old /var/lib/dpkg/status || sudo cp /var/backups/apt.extended_states.0 /var/lib/dpkg/status
dwyllie@dwyllie-X8DA3:~$ sudo mv /var/lib/dpkg/available /var/lib/dpkg/available-bad
dwyllie@dwyllie-X8DA3:~$ sudo cp /var/lib/dpkg/available-old /var/lib/dpkg/available
dwyllie@dwyllie-X8DA3:~$ sudo rm -rf /var/lib/dpkg/updates/*
dwyllie@dwyllie-X8DA3:~$ sudo rm -rf /var/lib/apt/lists
dwyllie@dwyllie-X8DA3:~$ sudo rm /var/cache/apt/*.bin
dwyllie@dwyllie-X8DA3:~$ sudo mkdir /var/lib/apt/lists
dwyllie@dwyllie-X8DA3:~$ sudo mkdir /var/lib/apt/lists/partial
dwyllie@dwyllie-X8DA3:~$ LANG=C;sudo apt-get clean
dwyllie@dwyllie-X8DA3:~$ LANG=C;sudo apt-get autoclean
Reading package lists... Done
Building dependency tree
Reading state information... Done
dwyllie@dwyllie-X8DA3:~$ LANG=C;sudo apt-get --purge autoremove
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages will be REMOVED:
  libaio1* libctemplate2* libdbd-mysql-perl* libdbi-perl* libgtkmm-2.4-1c2a*
  liblua5.1-0* libmysqlclient18* libmysqlcppconn7* libodbc1*
  libterm-readkey-perl* libtinyxml2.6.2* libvsqlitepp3* libzip2*
  mysql-client-5.6* mysql-client-core-5.6* mysql-common* mysql-common-5.6*
  mysql-server-core-5.6* python-pyodbc* python-pysqlite2*
0 upgraded, 0 newly installed, 20 to remove and 0 not upgraded.
After this operation, 121 MB disk space will be freed.
Do you want to continue? [Y/n] Y
dpkg: warning: files list file for package 'mysql-workbench-data' missing; assuming package has no files currently installed
dpkg: warning: files list file for package 'mysql-utilities' missing; assuming package has no files currently installed
(Reading database ... 221474 files and directories currently installed.)
Removing mysql-client-5.6 (5.6.19-0ubuntu0.14.04.1) ...
Removing mysql-server-core-5.6 (5.6.19-0ubuntu0.14.04.1) ...
Removing libctemplate2 (2.2-4ubuntu3) ...
Purging configuration files for libctemplate2 (2.2-4ubuntu3) ...
Removing libdbd-mysql-perl (4.025-1) ...
Removing libdbi-perl (1.630-1) ...
Removing libgtkmm-2.4-1c2a:amd64 (1:2.24.4-1ubuntu1) ...
Purging configuration files for libgtkmm-2.4-1c2a:amd64 (1:2.24.4-1ubuntu1) ...
Removing liblua5.1-0:amd64 (5.1.5-5) ...
Purging configuration files for liblua5.1-0:amd64 (5.1.5-5) ...
Removing libmysqlcppconn7 (1.1.3-5) ...
Purging configuration files for libmysqlcppconn7 (1.1.3-5) ...
Removing libmysqlclient18:amd64 (5.5.38-0ubuntu0.14.04.1) ...
Purging configuration files for libmysqlclient18:amd64 (5.5.38-0ubuntu0.14.04.1) ...
Removing python-pyodbc (3.0.6-2) ...
Removing libodbc1:amd64 (2.2.14p2-5ubuntu5) ...
Purging configuration files for libodbc1:amd64 (2.2.14p2-5ubuntu5) ...
Removing libterm-readkey-perl (2.31-1) ...
Removing libtinyxml2.6.2:amd64 (2.6.2-2) ...
Purging configuration files for libtinyxml2.6.2:amd64 (2.6.2-2) ...
Removing libvsqlitepp3:amd64 (0.3.12-1ubuntu1) ...
Purging configuration files for libvsqlitepp3:amd64 (0.3.12-1ubuntu1) ...
Removing libzip2 (0.10.1-1.2) ...
Purging configuration files for libzip2 (0.10.1-1.2) ...
Removing mysql-client-core-5.6 (5.6.19-0ubuntu0.14.04.1) ...
Removing mysql-common-5.6 (5.6.19-0ubuntu0.14.04.1) ...
Purging configuration files for mysql-common-5.6 (5.6.19-0ubuntu0.14.04.1) ...
Removing mysql-common (5.5.38-0ubuntu0.14.04.1) ...
Purging configuration files for mysql-common (5.5.38-0ubuntu0.14.04.1) ...
Removing python-pysqlite2 (2.6.3-3) ...
Removing libaio1:amd64 (0.3.109-4) ...
Purging configuration files for libaio1:amd64 (0.3.109-4) ...
Processing triggers for man-db (2.6.7.1-1) ...
Processing triggers for libc-bin (2.19-0ubuntu6.1) ...
dwyllie@dwyllie-X8DA3:~$ LANG=C;sudo apt-get --fix-missing update -o APT::Cache-Limit=100000000
Ign http://archive.canonical.com trusty InRelease
Get:1 http://archive.canonical.com trusty Release.gpg [933 B]
Get:2 http://archive.canonical.com trusty Release [8257 B]
Ign http://archive.ubuntu.com trusty InRelease
Ign http://archive.ubuntu.com trusty-updates InRelease
Get:3 http://archive.canonical.com trusty/partner Sources [7038 B]
Ign http://archive.ubuntu.com trusty-backports InRelease
Ign http://archive.ubuntu.com trusty-security InRelease
Get:4 http://archive.canonical.com trusty/partner amd64 Packages [4924 B]
Get:5 http://archive.canonical.com trusty/partner i386 Packages [5823 B]
Get:6 http://archive.ubuntu.com trusty Release.gpg [933 B]
Get:7 http://archive.ubuntu.com trusty-updates Release.gpg [933 B]
Ign http://archive.canonical.com trusty/partner Translation-en
Get:8 http://archive.ubuntu.com trusty-backports Release.gpg [933 B]
Get:9 http://archive.ubuntu.com trusty-security Release.gpg [933 B]
Get:10 http://archive.ubuntu.com trusty Release [58.5 kB]
Get:11 http://archive.ubuntu.com trusty-updates Release [59.7 kB]
Get:12 http://archive.ubuntu.com trusty-backports Release [59.7 kB]
Get:13 http://archive.ubuntu.com trusty-security Release [59.7 kB]
Get:14 http://archive.ubuntu.com trusty/main Sources [1064 kB]
Get:15 http://archive.ubuntu.com trusty/restricted Sources [5433 B]
Get:16 http://archive.ubuntu.com trusty/universe Sources [6399 kB]
Get:17 http://archive.ubuntu.com trusty/multiverse Sources [174 kB]
Get:18 http://archive.ubuntu.com trusty/main amd64 Packages [1350 kB]
Get:19 http://archive.ubuntu.com trusty/restricted amd64 Packages [13.0 kB]
Get:20 http://archive.ubuntu.com trusty/universe amd64 Packages [5859 kB]
Get:21 http://archive.ubuntu.com trusty/multiverse amd64 Packages [132 kB]
Get:22 http://archive.ubuntu.com trusty/main i386 Packages [1348 kB]
Get:23 http://archive.ubuntu.com trusty/restricted i386 Packages [13.4 kB]
Get:24 http://archive.ubuntu.com trusty/universe i386 Packages [5866 kB]
Get:25 http://archive.ubuntu.com trusty/multiverse i386 Packages [134 kB]
Get:26 http://archive.ubuntu.com trusty/main Translation-en [762 kB]
Get:27 http://archive.ubuntu.com trusty/multiverse Translation-en [102 kB]
Get:28 http://archive.ubuntu.com trusty/restricted Translation-en [3457 B]
Get:29 http://archive.ubuntu.com trusty/universe Translation-en [4089 kB]
Get:30 http://archive.ubuntu.com trusty-updates/main Sources [106 kB]
Get:31 http://archive.ubuntu.com trusty-updates/restricted Sources [1408 B]
Get:32 http://archive.ubuntu.com trusty-updates/universe Sources [67.1 kB]
Get:33 http://archive.ubuntu.com trusty-updates/multiverse Sources [2686 B]
Get:34 http://archive.ubuntu.com trusty-updates/main amd64 Packages [285 kB]
Get:35 http://archive.ubuntu.com trusty-updates/restricted amd64 Packages [5820 B]
Get:36 http://archive.ubuntu.com trusty-updates/universe amd64 Packages [168 kB]
Get:37 http://archive.ubuntu.com trusty-updates/multiverse amd64 Packages [7381 B]
Get:38 http://archive.ubuntu.com trusty-updates/main i386 Packages [281 kB]
Get:39 http://archive.ubuntu.com trusty-updates/restricted i386 Packages [5820 B]
Get:40 http://archive.ubuntu.com trusty-updates/universe i386 Packages [169 kB]
Get:41 http://archive.ubuntu.com trusty-updates/multiverse i386 Packages [7598 B]
Get:42 http://archive.ubuntu.com trusty-updates/main Translation-en [125 kB]
Get:43 http://archive.ubuntu.com trusty-updates/multiverse Translation-en [3971 B]
Get:44 http://archive.ubuntu.com trusty-updates/restricted Translation-en [1736 B]
Get:45 http://archive.ubuntu.com trusty-updates/universe Translation-en [82.7 kB]
Get:46 http://archive.ubuntu.com trusty-backports/main Sources [2859 B]
Get:47 http://archive.ubuntu.com trusty-backports/restricted Sources [14 B]
Get:48 http://archive.ubuntu.com trusty-backports/universe Sources [11.0 kB]
Get:49 http://archive.ubuntu.com trusty-backports/multiverse Sources [768 B]
Get:50 http://archive.ubuntu.com trusty-backports/main amd64 Packages [4277 B]
Get:51 http://archive.ubuntu.com trusty-backports/restricted amd64 Packages [14 B]
Get:52 http://archive.ubuntu.com trusty-backports/universe amd64 Packages [14.0 kB]
Get:53 http://archive.ubuntu.com trusty-backports/multiverse amd64 Packages [619 B]
Get:54 http://archive.ubuntu.com trusty-backports/main i386 Packages [4261 B]
Get:55 http://archive.ubuntu.com trusty-backports/restricted i386 Packages [14 B]
Get:56 http://archive.ubuntu.com trusty-backports/universe i386 Packages [14.0 kB]
Get:57 http://archive.ubuntu.com trusty-backports/multiverse i386 Packages [619 B]
Get:58 http://archive.ubuntu.com trusty-backports/main Translation-en [2778 B]
Get:59 http://archive.ubuntu.com trusty-backports/multiverse Translation-en [307 B]
Get:60 http://archive.ubuntu.com trusty-backports/restricted Translation-en [14 B]
Get:61 http://archive.ubuntu.com trusty-backports/universe Translation-en [9170 B]
Get:62 http://archive.ubuntu.com trusty-security/main Sources [37.7 kB]
Get:63 http://archive.ubuntu.com trusty-security/restricted Sources [14 B]
Get:64 http://archive.ubuntu.com trusty-security/universe Sources [10.3 kB]
Get:65 http://archive.ubuntu.com trusty-security/multiverse Sources [697 B]
Get:66 http://archive.ubuntu.com trusty-security/main amd64 Packages [121 kB]
Get:67 http://archive.ubuntu.com trusty-security/restricted amd64 Packages [14 B]
Get:68 http://archive.ubuntu.com trusty-security/universe amd64 Packages [42.2 kB]
Get:69 http://archive.ubuntu.com trusty-security/multiverse amd64 Packages [1147 B]
Get:70 http://archive.ubuntu.com trusty-security/main i386 Packages [118 kB]
Get:71 http://archive.ubuntu.com trusty-security/restricted i386 Packages [14 B]
Get:72 http://archive.ubuntu.com trusty-security/universe i386 Packages [42.0 kB]
Get:73 http://archive.ubuntu.com trusty-security/multiverse i386 Packages [1402 B]
Get:74 http://archive.ubuntu.com trusty-security/main Translation-en [58.2 kB]
Get:75 http://archive.ubuntu.com trusty-security/multiverse Translation-en [587 B]
Get:76 http://archive.ubuntu.com trusty-security/restricted Translation-en [14 B]
Get:77 http://archive.ubuntu.com trusty-security/universe Translation-en [24.4 kB]
Fetched 29.4 MB in 10s (2801 kB/s)
Reading package lists... Done
dwyllie@dwyllie-X8DA3:~$ sudo dpkg --configure -a
dwyllie@dwyllie-X8DA3:~$ sudo dpkg --clear-avail
dwyllie@dwyllie-X8DA3:~$ LANG=C;sudo apt-get -f install
Reading package lists... Done
Building dependency tree
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
dwyllie@dwyllie-X8DA3:~$ LANG=C;sudo apt-get --fix-missing install
Reading package lists... Done
Building dependency tree
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
dwyllie@dwyllie-X8DA3:~$ LANG=C;sudo apt-get update -o APT::Cache-Limit=100000000 && sudo apt-get dist-upgrade
Ign http://archive.canonical.com trusty InRelease
Hit http://archive.canonical.com trusty Release.gpg
Hit http://archive.canonical.com trusty Release
Ign http://archive.ubuntu.com trusty InRelease
Ign http://archive.ubuntu.com trusty-updates InRelease
Hit http://archive.canonical.com trusty/partner Sources
Ign http://archive.ubuntu.com trusty-backports InRelease
Hit http://archive.canonical.com trusty/partner amd64 Packages
Hit http://archive.canonical.com trusty/partner i386 Packages
Ign http://archive.ubuntu.com trusty-security InRelease
Hit http://archive.ubuntu.com trusty Release.gpg
Ign http://archive.canonical.com trusty/partner Translation-en
Hit http://archive.ubuntu.com trusty-updates Release.gpg
Hit http://archive.ubuntu.com trusty-backports Release.gpg
Hit http://archive.ubuntu.com trusty-security Release.gpg
Hit http://archive.ubuntu.com trusty Release
Hit http://archive.ubuntu.com trusty-updates Release
Hit http://archive.ubuntu.com trusty-backports Release
Hit http://archive.ubuntu.com trusty-security Release
Hit http://archive.ubuntu.com trusty/main Sources
Hit http://archive.ubuntu.com trusty/restricted Sources
Hit http://archive.ubuntu.com trusty/universe Sources
Hit http://archive.ubuntu.com trusty/multiverse Sources
Hit http://archive.ubuntu.com trusty/main amd64 Packages
Hit http://archive.ubuntu.com trusty/restricted amd64 Packages
Hit http://archive.ubuntu.com trusty/universe amd64 Packages
Hit http://archive.ubuntu.com trusty/multiverse amd64 Packages
Hit http://archive.ubuntu.com trusty/main i386 Packages
Hit http://archive.ubuntu.com trusty/restricted i386 Packages
Hit http://archive.ubuntu.com trusty/universe i386 Packages
Hit http://archive.ubuntu.com trusty/multiverse i386 Packages
Hit http://archive.ubuntu.com trusty/main Translation-en
Hit http://archive.ubuntu.com trusty/multiverse Translation-en
Hit http://archive.ubuntu.com trusty/restricted Translation-en
Hit http://archive.ubuntu.com trusty/universe Translation-en
Hit http://archive.ubuntu.com trusty-updates/main Sources
Hit http://archive.ubuntu.com trusty-updates/restricted Sources
Hit http://archive.ubuntu.com trusty-updates/universe Sources
Hit http://archive.ubuntu.com trusty-updates/multiverse Sources
Hit http://archive.ubuntu.com trusty-updates/main amd64 Packages
Hit http://archive.ubuntu.com trusty-updates/restricted amd64 Packages
Hit http://archive.ubuntu.com trusty-updates/universe amd64 Packages
Hit http://archive.ubuntu.com trusty-updates/multiverse amd64 Packages
Hit http://archive.ubuntu.com trusty-updates/main i386 Packages
Hit http://archive.ubuntu.com trusty-updates/restricted i386 Packages
Hit http://archive.ubuntu.com trusty-updates/universe i386 Packages
Hit http://archive.ubuntu.com trusty-updates/multiverse i386 Packages
Hit http://archive.ubuntu.com trusty-updates/main Translation-en
Hit http://archive.ubuntu.com trusty-updates/multiverse Translation-en
Hit http://archive.ubuntu.com trusty-updates/restricted Translation-en
Hit http://archive.ubuntu.com trusty-updates/universe Translation-en
Hit http://archive.ubuntu.com trusty-backports/main Sources
Hit http://archive.ubuntu.com trusty-backports/restricted Sources
Hit http://archive.ubuntu.com trusty-backports/universe Sources
Hit http://archive.ubuntu.com trusty-backports/multiverse Sources
Hit http://archive.ubuntu.com trusty-backports/main amd64 Packages
Hit http://archive.ubuntu.com trusty-backports/restricted amd64 Packages
Hit http://archive.ubuntu.com trusty-backports/universe amd64 Packages
Hit http://archive.ubuntu.com trusty-backports/multiverse amd64 Packages
Hit http://archive.ubuntu.com trusty-backports/main i386 Packages
Hit http://archive.ubuntu.com trusty-backports/restricted i386 Packages
Hit http://archive.ubuntu.com trusty-backports/universe i386 Packages
Hit http://archive.ubuntu.com trusty-backports/multiverse i386 Packages
Hit http://archive.ubuntu.com trusty-backports/main Translation-en
Hit http://archive.ubuntu.com trusty-backports/multiverse Translation-en
Hit http://archive.ubuntu.com trusty-backports/restricted Translation-en
Hit http://archive.ubuntu.com trusty-backports/universe Translation-en
Hit http://archive.ubuntu.com trusty-security/main Sources
Hit http://archive.ubuntu.com trusty-security/restricted Sources
Hit http://archive.ubuntu.com trusty-security/universe Sources
Hit http://archive.ubuntu.com trusty-security/multiverse Sources
Hit http://archive.ubuntu.com trusty-security/main amd64 Packages
Hit http://archive.ubuntu.com trusty-security/restricted amd64 Packages
Hit http://archive.ubuntu.com trusty-security/universe amd64 Packages
Hit http://archive.ubuntu.com trusty-security/multiverse amd64 Packages
Hit http://archive.ubuntu.com trusty-security/main i386 Packages
Hit http://archive.ubuntu.com trusty-security/restricted i386 Packages
Hit http://archive.ubuntu.com trusty-security/universe i386 Packages
Hit http://archive.ubuntu.com trusty-security/multiverse i386 Packages
Hit http://archive.ubuntu.com trusty-security/main Translation-en
Hit http://archive.ubuntu.com trusty-security/multiverse Translation-en
Hit http://archive.ubuntu.com trusty-security/restricted Translation-en
Hit http://archive.ubuntu.com trusty-security/universe Translation-en
Reading package lists... Done
Reading package lists... Done
Building dependency tree
Reading state information... Done
Calculating upgrade... Done
The following packages will be upgraded:
  libnautilus-extension1a nautilus nautilus-data unity-settings-daemon
4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 1073 kB of archives.
After this operation, 23.6 kB disk space will be freed.
Do you want to continue? [Y/n] Y
Get:1 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libnautilus-extension1a amd64 1:3.10.1-0ubuntu9.3 [52.5 kB]
Get:2 http://archive.ubuntu.com/ubuntu/ trusty-updates/main nautilus-data all 1:3.10.1-0ubuntu9.3 [50.9 kB]
Get:3 http://archive.ubuntu.com/ubuntu/ trusty-updates/main nautilus amd64 1:3.10.1-0ubuntu9.3 [481 kB]
Get:4 http://archive.ubuntu.com/ubuntu/ trusty-updates/main unity-settings-daemon amd64 14.04.0+14.04.20140606-0ubuntu1 [489 kB]
Fetched 1073 kB in 0s (5258 kB/s)
dpkg: warning: files list file for package 'mysql-workbench-data' missing; assuming package has no files currently installed
dpkg: warning: files list file for package 'mysql-utilities' missing; assuming package has no files currently installed
(Reading database ... 221021 files and directories currently installed.)
Preparing to unpack .../libnautilus-extension1a_1%3a3.10.1-0ubuntu9.3_amd64.deb ...
Unpacking libnautilus-extension1a (1:3.10.1-0ubuntu9.3) over (1:3.10.1-0ubuntu8) ...
Preparing to unpack .../nautilus-data_1%3a3.10.1-0ubuntu9.3_all.deb ...
Unpacking nautilus-data (1:3.10.1-0ubuntu9.3) over (1:3.10.1-0ubuntu8) ...
Preparing to unpack .../nautilus_1%3a3.10.1-0ubuntu9.3_amd64.deb ...
Unpacking nautilus (1:3.10.1-0ubuntu9.3) over (1:3.10.1-0ubuntu8) ...
Preparing to unpack .../unity-settings-daemon_14.04.0+14.04.20140606-0ubuntu1_amd64.deb ...
Unpacking unity-settings-daemon (14.04.0+14.04.20140606-0ubuntu1) over (14.04.0+14.04.20140414-0ubuntu1) ...
Processing triggers for libglib2.0-0:amd64 (2.40.0-2) ...
Processing triggers for shared-mime-info (1.2-0ubuntu3) ...
Processing triggers for gconf2 (3.2.6-0ubuntu2) ...
Processing triggers for man-db (2.6.7.1-1) ...
Processing triggers for gnome-menus (3.10.1-0ubuntu2) ...
Processing triggers for desktop-file-utils (0.22-1ubuntu1) ...
Processing triggers for bamfdaemon (0.5.1+14.04.20140409-0ubuntu1) ...
Rebuilding /usr/share/applications/bamf-2.index...
Processing triggers for mime-support (3.54ubuntu1) ...
Processing triggers for hicolor-icon-theme (0.13-1) ...
Setting up libnautilus-extension1a (1:3.10.1-0ubuntu9.3) ...
Setting up nautilus-data (1:3.10.1-0ubuntu9.3) ...
Setting up nautilus (1:3.10.1-0ubuntu9.3) ...
Setting up unity-settings-daemon (14.04.0+14.04.20140606-0ubuntu1) ...
Processing triggers for libc-bin (2.19-0ubuntu6.1) ...
dwyllie@dwyllie-X8DA3:~$ find /etc/apt -name '*.list' -exec bash -c 'echo -e "\n$1\n"; cat -n "$1"' _ '{}' \;

/etc/apt/sources.list

     1 # deb cdrom:[Ubuntu 14.04 LTS _Trusty Tahr_ - Release amd64 (20140417)]/ trusty main restricted
     2
     3 # See http://help.ubuntu.com/community/UpgradeNotes for how to upgrade to
     4 # newer versions of the distribution.
     5 deb http://archive.ubuntu.com/ubuntu trusty main restricted
     6 deb-src http://archive.ubuntu.com/ubuntu trusty main restricted
     7
     8 ## Major bug fix updates produced after the final release of the
     9 ## distribution.
    10 deb http://archive.ubuntu.com/ubuntu trusty-updates main restricted
    11 deb-src http://archive.ubuntu.com/ubuntu trusty-updates main restricted
    12
    13 ## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu
    14 ## team. Also, please note that software in universe WILL NOT receive any
    15 ## review or updates from the Ubuntu security team.
    16 deb http://archive.ubuntu.com/ubuntu trusty universe
    17 deb-src http://archive.ubuntu.com/ubuntu trusty universe
    18 deb http://archive.ubuntu.com/ubuntu trusty-updates universe
    19 deb-src http://archive.ubuntu.com/ubuntu trusty-updates universe
    20
    21 ## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu
    22 ## team, and may not be under a free licence. Please satisfy yourself as to
    23 ## your rights to use the software. Also, please note that software in
    24 ## multiverse WILL NOT receive any review or updates from the Ubuntu
    25 ## security team.
    26 deb http://archive.ubuntu.com/ubuntu trusty multiverse
    27 deb-src http://archive.ubuntu.com/ubuntu trusty multiverse
    28 deb http://archive.ubuntu.com/ubuntu trusty-updates multiverse
    29 deb-src http://archive.ubuntu.com/ubuntu trusty-updates multiverse
    30
    31 ## N.B. software from this repository may not have been tested as
    32 ## extensively as that contained in the main release, although it includes
    33 ## newer versions of some applications which may provide useful features.
    34 ## Also, please note that software in backports WILL NOT receive any review
    35 ## or updates from the Ubuntu security team.
    36 deb http://archive.ubuntu.com/ubuntu trusty-backports main restricted universe multiverse
    37 deb-src http://archive.ubuntu.com/ubuntu trusty-backports main restricted universe multiverse
    38
    39 deb http://archive.ubuntu.com/ubuntu trusty-security main restricted
    40 deb-src http://archive.ubuntu.com/ubuntu trusty-security main restricted
    41 deb http://archive.ubuntu.com/ubuntu trusty-security universe
    42 deb-src http://archive.ubuntu.com/ubuntu trusty-security universe
    43 deb http://archive.ubuntu.com/ubuntu trusty-security multiverse
    44 deb-src http://archive.ubuntu.com/ubuntu trusty-security multiverse
    45
    46 ## Uncomment the following two lines to add software from Canonical's
    47 ## 'partner' repository.
    48 ## This software is not part of Ubuntu, but is offered by Canonical and the
    49 ## respective vendors as a service to Ubuntu users.
    50 deb http://archive.canonical.com/ubuntu trusty partner
    51 deb-src http://archive.canonical.com/ubuntu trusty partner
    52
    53 ## This software is not part of Ubuntu, but is offered by third-party
    54 ## developers who want to ship their latest software.
    55 # deb http://extras.ubuntu.com/ubuntu trusty main
    56 # deb-src http://extras.ubuntu.com/ubuntu trusty main
dwyllie@dwyllie-X8DA3:~$

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Manfred Hampl (m-hampl) said :
#1

The package management troubleshooting procedure seems to have solved most problems; the only minor issue that I see in your output is

dpkg: warning: files list file for package 'mysql-workbench-data' missing; assuming package has no files currently installed
dpkg: warning: files list file for package 'mysql-utilities' missing; assuming package has no files currently installed

Please try the command

sudo apt-get install --reinstall mysql-utilities mysql-workbench-data
sudo apt-get update
sudo apt-get dist-upgrade

and copy/paste all output as done before.

Can you help with this problem?

Provide an answer of your own, or ask David Wyllie for more information if necessary.

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