https://launchpad.net/ubuntu/+source/abyss/2.2.4-1/+build/18695081 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-014 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 11 Feb 23:13:33 ntpdate[1944]: adjust time server 10.211.37.1 offset 0.069252 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18695081 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18695081 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18695081 Starting target for build PACKAGEBUILD-18695081 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18695081 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu focal-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu focal-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu focal-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18695081 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18695081 Updating target for build PACKAGEBUILD-18695081 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [941 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [504 kB] Get:7 http://ftpmaster.internal/ubuntu focal/restricted armhf Packages [7060 B] Get:8 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [6132 B] Get:9 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8364 kB] Get:10 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5150 kB] Get:11 http://ftpmaster.internal/ubuntu focal/multiverse armhf Packages [117 kB] Get:12 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [106 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [124 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [60.3 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/restricted Translation-en [1236 B] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [603 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [358 kB] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/multiverse armhf Packages [8156 B] Get:19 http://ftpmaster.internal/ubuntu focal-proposed/multiverse Translation-en [8664 B] Fetched 17.0 MB in 7s (2362 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux 105 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 56.9 MB of archives. After this operation, 37.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main armhf linux-libc-dev armhf 5.4.0-14.17 [1115 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf gcc-10-base armhf 10-20200211-1ubuntu1 [18.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-s1 armhf 10-20200211-1ubuntu1 [36.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libgcc1 armhf 1:10-20200211-1ubuntu1 [36.4 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main armhf bsdutils armhf 1:2.34-0.1ubuntu6 [58.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf grep armhf 3.4-1 [141 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main armhf login armhf 1:4.8.1-1ubuntu1 [217 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libblkid1 armhf 2.34-0.1ubuntu6 [124 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libuuid1 armhf 2.34-0.1ubuntu6 [19.6 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libfdisk1 armhf 2.34-0.1ubuntu6 [163 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libselinux1 armhf 3.0-1 [60.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libmount1 armhf 2.34-0.1ubuntu6 [135 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.1+20191019-1ubuntu1 [72.8 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.1+20191019-1ubuntu1 [106 kB] Get:32 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsmartcols1 armhf 2.34-0.1ubuntu6 [88.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal-proposed/main armhf fdisk armhf 2.34-0.1ubuntu6 [109 kB] Get:34 http://ftpmaster.internal/ubuntu focal-proposed/main armhf util-linux armhf 2.34-0.1ubuntu6 [958 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.251ubuntu1 [5592 B] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-1ubuntu1 [19.2 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libgpg-error0 armhf 1.36-7ubuntu1 [49.8 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 10-20200211-1ubuntu1 [440 kB] Get:45 http://ftpmaster.internal/ubuntu focal-proposed/main armhf systemd-sysv armhf 244.2-1ubuntu1 [9368 B] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu1 [29.4 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:49 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcap-ng0 armhf 0.7.9-2.1build1 [9688 B] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu5 [35.9 kB] Get:51 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcap2 armhf 1:2.31-1 [14.1 kB] Get:52 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libudev1 armhf 244.2-1ubuntu1 [69.6 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.155-2ubuntu8 [118 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-6 [25.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libssl1.1 armhf 1.1.1d-2ubuntu3 [1080 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-3ubuntu1 [163 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgmp10 armhf 2:6.2.0+dfsg-3 [192 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libffi7 armhf 3.3-3 [16.5 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.20-1build1 [167 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.15.0-2 [33.0 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 26-3ubuntu1 [37.0 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.2-2ubuntu2 [32.5 kB] Get:67 http://ftpmaster.internal/ubuntu focal-proposed/main armhf mount armhf 2.34-0.1ubuntu6 [108 kB] Get:68 http://ftpmaster.internal/ubuntu focal-proposed/main armhf systemd armhf 244.2-1ubuntu1 [3535 kB] Get:69 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsystemd0 armhf 244.2-1ubuntu1 [241 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-1 [207 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.9 [776 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.9 [1236 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf logsave armhf 1.45.3-4ubuntu3 [9172 B] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libext2fs2 armhf 1.45.3-4ubuntu3 [168 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf e2fsprogs armhf 1.45.3-4ubuntu3 [506 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 3.0-1 [9880 B] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 3.0-1 [73.9 kB] Get:85 http://ftpmaster.internal/ubuntu focal-proposed/main armhf passwd armhf 1:4.8.1-1ubuntu1 [749 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 10-20200211-1ubuntu1 [86.5 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 10-20200211-1ubuntu1 [7244 B] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libasan5 armhf 9.2.1-28ubuntu1 [387 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 10-20200211-1ubuntu1 [121 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf g++-9 armhf 9.2.1-28ubuntu1 [6681 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9 armhf 9.2.1-28ubuntu1 [6537 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++-9-dev armhf 9.2.1-28ubuntu1 [1779 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-9-dev armhf 9.2.1-28ubuntu1 [690 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22-2 [460 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 10-20200211-1ubuntu1 [34.3 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.34-1ubuntu1 [2093 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.34-1ubuntu1 [319 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.34-1ubuntu1 [3368 B] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.34-1ubuntu1 [206 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf libctf-nobfd0 armhf 2.34-1ubuntu1 [37.3 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main armhf libctf0 armhf 2.34-1ubuntu1 [37.0 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main armhf cpp-9 armhf 9.2.1-28ubuntu1 [5874 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9-base armhf 9.2.1-28ubuntu1 [19.0 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main armhf libcom-err2 armhf 1.45.3-4ubuntu3 [8164 B] Get:105 http://ftpmaster.internal/ubuntu focal/main armhf libss2 armhf 1.45.3-4ubuntu3 [9384 B] Get:106 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:107 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsqlite3-0 armhf 3.31.1-1ubuntu1 [467 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main armhf openssl armhf 1.1.1d-2ubuntu3 [595 kB] Get:109 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpng16-16 armhf 1.6.37-2 [162 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main armhf libassuan0 armhf 2.5.3-7ubuntu2 [29.1 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.9 MB in 28s (2007 kB/s) (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_armhf.deb ... Unpacking libc6-dev:armhf (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_armhf.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-14.17_armhf.deb ... Unpacking linux-libc-dev:armhf (5.4.0-14.17) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:armhf. Preparing to unpack .../gcc-10-base_10-20200211-1ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10-20200211-1ubuntu1) ... Setting up gcc-10-base:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package libgcc-s1:armhf. (Reading database ... 12497 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (10-20200211-1ubuntu1) ... Replacing files in old package libgcc1:armhf (1:9.2.1-9ubuntu2) ... Setting up libgcc-s1:armhf (10-20200211-1ubuntu1) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a10-20200211-1ubuntu1_armhf.deb ... Unpacking libgcc1 (1:10-20200211-1ubuntu1) over (1:9.2.1-9ubuntu2) ... Setting up libgcc1 (1:10-20200211-1ubuntu1) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../libc6_2.30-0ubuntu3_armhf.deb ... Unpacking libc6:armhf (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc6:armhf (2.30-0ubuntu3) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu2_armhf.deb ... Unpacking base-files (11ubuntu2) over (10.2ubuntu7) ... Setting up base-files (11ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Updating /root/.profile to current default. (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../debianutils_4.9.1_armhf.deb ... Unpacking debianutils (4.9.1) over (4.8.6.3) ... Setting up debianutils (4.9.1) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../bash_5.0-5ubuntu1_armhf.deb ... Unpacking bash (5.0-5ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu6_armhf.deb ... Unpacking bsdutils (1:2.34-0.1ubuntu6) over (1:2.34-0.1ubuntu2) ... Setting up bsdutils (1:2.34-0.1ubuntu6) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../archives/grep_3.4-1_armhf.deb ... Unpacking grep (3.4-1) over (3.3-1build1) ... Setting up grep (3.4-1) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../gzip_1.10-0ubuntu4_armhf.deb ... Unpacking gzip (1.10-0ubuntu4) over (1.10-0ubuntu3) ... Setting up gzip (1.10-0ubuntu4) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../hostname_3.23_armhf.deb ... Unpacking hostname (3.23) over (3.22) ... Setting up hostname (3.23) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu1_armhf.deb ... Unpacking login (1:4.8.1-1ubuntu1) over (1:4.5-1.1ubuntu4) ... Setting up login (1:4.8.1-1ubuntu1) ... Installing new version of config file /etc/pam.d/login ... Removing obsolete conffile /etc/securetty ... (Reading database ... 12496 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking ncurses-bin (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-bin (6.1+20191019-1ubuntu1) ... (Reading database ... 12496 files and directories currently installed.) Preparing to unpack .../perl_5.30.0-9_armhf.deb ... Unpacking perl (5.30.0-9) over (5.28.1-6build1) ... Replacing files in old package perl-base (5.28.1-6build1) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../perl-modules-5.30_5.30.0-9_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9) ... Selecting previously unselected package libperl5.30:armhf. Preparing to unpack .../libperl5.30_5.30.0-9_armhf.deb ... Unpacking libperl5.30:armhf (5.30.0-9) ... Preparing to unpack .../perl-base_5.30.0-9_armhf.deb ... Unpacking perl-base (5.30.0-9) over (5.28.1-6build1) ... Setting up perl-base (5.30.0-9) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-2_armhf.deb ... Unpacking bzip2 (1.0.8-2) over (1.0.6-9.2) ... Preparing to unpack .../libbz2-1.0_1.0.8-2_armhf.deb ... Unpacking libbz2-1.0:armhf (1.0.8-2) over (1.0.6-9.2) ... Setting up libbz2-1.0:armhf (1.0.8-2) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libblkid1_2.34-0.1ubuntu6_armhf.deb ... Unpacking libblkid1:armhf (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Setting up libblkid1:armhf (2.34-0.1ubuntu6) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1ubuntu6_armhf.deb ... Unpacking libuuid1:armhf (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Setting up libuuid1:armhf (2.34-0.1ubuntu6) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.34-0.1ubuntu6_armhf.deb ... Unpacking libfdisk1:armhf (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Setting up libfdisk1:armhf (2.34-0.1ubuntu6) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.34-7_armhf.deb ... Unpacking libpcre2-8-0:armhf (10.34-7) over (10.32-5) ... Setting up libpcre2-8-0:armhf (10.34-7) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1_armhf.deb ... Unpacking libselinux1:armhf (3.0-1) over (2.9-2) ... Setting up libselinux1:armhf (3.0-1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libmount1_2.34-0.1ubuntu6_armhf.deb ... Unpacking libmount1:armhf (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Setting up libmount1:armhf (2.34-0.1ubuntu6) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libncurses6_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking libncurses6:armhf (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Preparing to unpack .../libtinfo6_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up libtinfo6:armhf (6.1+20191019-1ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking libncursesw6:armhf (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up libncursesw6:armhf (6.1+20191019-1ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.34-0.1ubuntu6_armhf.deb ... Unpacking libsmartcols1:armhf (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Setting up libsmartcols1:armhf (2.34-0.1ubuntu6) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../fdisk_2.34-0.1ubuntu6_armhf.deb ... Unpacking fdisk (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Setting up fdisk (2.34-0.1ubuntu6) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../util-linux_2.34-0.1ubuntu6_armhf.deb ... Unpacking util-linux (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Setting up util-linux (2.34-0.1ubuntu6) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.251ubuntu1_armhf.deb ... Unpacking libdebconfclient0:armhf (0.251ubuntu1) over (0.249ubuntu1) ... Setting up libdebconfclient0:armhf (0.251ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.47_armhf.deb ... Unpacking base-passwd (3.5.47) over (3.5.46) ... Setting up base-passwd (3.5.47) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libc-bin_2.30-0ubuntu3_armhf.deb ... Unpacking libc-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc-bin (2.30-0ubuntu3) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20191019-1ubuntu1_all.deb ... Unpacking ncurses-base (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-base (6.1+20191019-1ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../lsb-base_11.1.0ubuntu2_all.deb ... Unpacking lsb-base (11.1.0ubuntu2) over (11.0.1ubuntu1) ... Setting up lsb-base (11.1.0ubuntu2) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-1ubuntu1_armhf.deb ... Unpacking sysvinit-utils (2.96-1ubuntu1) over (2.95-5ubuntu2) ... Setting up sysvinit-utils (2.96-1ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.36-7ubuntu1_armhf.deb ... Unpacking libgpg-error0:armhf (1.36-7ubuntu1) over (1.36-7) ... Setting up libgpg-error0:armhf (1.36-7ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.5-3ubuntu1_armhf.deb ... Unpacking libgcrypt20:armhf (1.8.5-3ubuntu1) over (1.8.4-5ubuntu2) ... Setting up libgcrypt20:armhf (1.8.5-3ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.2-2_armhf.deb ... Unpacking liblz4-1:armhf (1.9.2-2) over (1.9.1-1) ... Setting up liblz4-1:armhf (1.9.2-2) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libstdc++6_10-20200211-1ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Setting up libstdc++6:armhf (10-20200211-1ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../systemd-sysv_244.2-1ubuntu1_armhf.deb ... Unpacking systemd-sysv (244.2-1ubuntu1) over (242-7ubuntu3) ... Preparing to unpack .../libacl1_2.2.53-5ubuntu1_armhf.deb ... Unpacking libacl1:armhf (2.2.53-5ubuntu1) over (2.2.53-4) ... Setting up libacl1:armhf (2.2.53-5ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.13.3-7ubuntu1_armhf.deb ... Unpacking libapparmor1:armhf (2.13.3-7ubuntu1) over (2.13.3-5ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a2.8.5-2ubuntu5_all.deb ... Unpacking libaudit-common (1:2.8.5-2ubuntu5) over (1:2.8.5-2ubuntu1) ... Setting up libaudit-common (1:2.8.5-2ubuntu5) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.1build1_armhf.deb ... Unpacking libcap-ng0:armhf (0.7.9-2.1build1) over (0.7.9-2) ... Setting up libcap-ng0:armhf (0.7.9-2.1build1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-2ubuntu5_armhf.deb ... Unpacking libaudit1:armhf (1:2.8.5-2ubuntu5) over (1:2.8.5-2ubuntu1) ... Setting up libaudit1:armhf (1:2.8.5-2ubuntu5) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.31-1_armhf.deb ... Unpacking libcap2:armhf (1:2.31-1) over (1:2.25-2) ... Preparing to unpack .../libudev1_244.2-1ubuntu1_armhf.deb ... Unpacking libudev1:armhf (244.2-1ubuntu1) over (242-7ubuntu3) ... Setting up libudev1:armhf (244.2-1ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.155-2ubuntu8_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.155-2ubuntu8) over (2:1.02.155-2ubuntu6) ... Preparing to unpack .../libjson-c4_0.13.1+dfsg-6_armhf.deb ... Unpacking libjson-c4:armhf (0.13.1+dfsg-6) over (0.13.1+dfsg-4) ... Preparing to unpack .../libssl1.1_1.1.1d-2ubuntu3_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-2ubuntu3) over (1.1.1c-1ubuntu4) ... Preparing to unpack .../libcryptsetup12_2%3a2.2.2-3ubuntu1_armhf.deb ... Unpacking libcryptsetup12:armhf (2:2.2.2-3ubuntu1) over (2:2.2.0-3ubuntu1) ... Selecting previously unselected package libnettle7:armhf. Preparing to unpack .../libnettle7_3.5.1+really3.5.1-2_armhf.deb ... Unpacking libnettle7:armhf (3.5.1+really3.5.1-2) ... Setting up libnettle7:armhf (3.5.1+really3.5.1-2) ... (Reading database ... 14404 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-3_armhf.deb ... Unpacking libgmp10:armhf (2:6.2.0+dfsg-3) over (2:6.1.2+dfsg-4) ... Setting up libgmp10:armhf (2:6.2.0+dfsg-3) ... Selecting previously unselected package libhogweed5:armhf. (Reading database ... 14404 files and directories currently installed.) Preparing to unpack .../libhogweed5_3.5.1+really3.5.1-2_armhf.deb ... Unpacking libhogweed5:armhf (3.5.1+really3.5.1-2) ... Setting up libhogweed5:armhf (3.5.1+really3.5.1-2) ... Selecting previously unselected package libffi7:armhf. (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libffi7_3.3-3_armhf.deb ... Unpacking libffi7:armhf (3.3-3) ... Setting up libffi7:armhf (3.3-3) ... (Reading database ... 14412 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.20-1build1_armhf.deb ... Unpacking libp11-kit0:armhf (0.23.20-1build1) over (0.23.17-2) ... Setting up libp11-kit0:armhf (0.23.20-1build1) ... (Reading database ... 14412 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.15.0-2_armhf.deb ... Unpacking libtasn1-6:armhf (4.15.0-2) over (4.14-3) ... Setting up libtasn1-6:armhf (4.15.0-2) ... (Reading database ... 14412 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.11.1-2ubuntu2_armhf.deb ... Unpacking libgnutls30:armhf (3.6.11.1-2ubuntu2) over (3.6.9-5ubuntu1) ... Setting up libgnutls30:armhf (3.6.11.1-2ubuntu2) ... (Reading database ... 14411 files and directories currently installed.) Preparing to unpack .../libkmod2_26-3ubuntu1_armhf.deb ... Unpacking libkmod2:armhf (26-3ubuntu1) over (26-1ubuntu1) ... Preparing to unpack .../libpam0g_1.3.1-5ubuntu4_armhf.deb ... Unpacking libpam0g:armhf (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam0g:armhf (1.3.1-5ubuntu4) ... (Reading database ... 14411 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.4.2-2ubuntu2_armhf.deb ... Unpacking libseccomp2:armhf (2.4.2-2ubuntu2) over (2.4.1-0ubuntu0.19.10.3) ... Setting up libseccomp2:armhf (2.4.2-2ubuntu2) ... (Reading database ... 14411 files and directories currently installed.) Preparing to unpack .../mount_2.34-0.1ubuntu6_armhf.deb ... Unpacking mount (2.34-0.1ubuntu6) over (2.34-0.1ubuntu2) ... Preparing to unpack .../systemd_244.2-1ubuntu1_armhf.deb ... Unpacking systemd (244.2-1ubuntu1) over (242-7ubuntu3) ... Preparing to unpack .../libsystemd0_244.2-1ubuntu1_armhf.deb ... Unpacking libsystemd0:armhf (244.2-1ubuntu1) over (242-7ubuntu3) ... Setting up libsystemd0:armhf (244.2-1ubuntu1) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.4+dfsg-1_armhf.deb ... Unpacking libzstd1:armhf (1.4.4+dfsg-1) over (1.4.3+dfsg-1) ... Setting up libzstd1:armhf (1.4.4+dfsg-1) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.90_1.9.9_armhf.deb ... Unpacking libapt-pkg5.90:armhf (1.9.9) over (1.9.4) ... Setting up libapt-pkg5.90:armhf (1.9.9) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpgv (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Setting up gpgv (2.2.17-3ubuntu1) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2020.02.11.1_all.deb ... Unpacking ubuntu-keyring (2020.02.11.1) over (2018.09.18.1) ... Setting up ubuntu-keyring (2020.02.11.1) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../archives/apt_1.9.9_armhf.deb ... Unpacking apt (1.9.9) over (1.9.4) ... Setting up apt (1.9.9) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5ubuntu4_armhf.deb ... Unpacking libpam-modules-bin (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules-bin (1.3.1-5ubuntu4) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5ubuntu4_armhf.deb ... Unpacking libpam-modules:armhf (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules:armhf (1.3.1-5ubuntu4) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../logsave_1.45.3-4ubuntu3_armhf.deb ... Unpacking logsave (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../libext2fs2_1.45.3-4ubuntu3_armhf.deb ... Unpacking libext2fs2:armhf (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Setting up libext2fs2:armhf (1.45.3-4ubuntu3) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.3-4ubuntu3_armhf.deb ... Unpacking e2fsprogs (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../libattr1_1%3a2.4.48-5_armhf.deb ... Unpacking libattr1:armhf (1:2.4.48-5) over (1:2.4.48-4) ... Setting up libattr1:armhf (1:2.4.48-5) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-5ubuntu4_all.deb ... Unpacking libpam-runtime (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-runtime (1.3.1-5ubuntu4) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libsepol1_3.0-1_armhf.deb ... Unpacking libsepol1:armhf (3.0-1) over (2.9-2) ... Setting up libsepol1:armhf (3.0-1) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.0-1_all.deb ... Unpacking libsemanage-common (3.0-1) over (2.9-3) ... Setting up libsemanage-common (3.0-1) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.0-1_armhf.deb ... Unpacking libsemanage1:armhf (3.0-1) over (2.9-3) ... Setting up libsemanage1:armhf (3.0-1) ... (Reading database ... 14407 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu1_armhf.deb ... Unpacking passwd (1:4.8.1-1ubuntu1) over (1:4.5-1.1ubuntu4) ... Setting up passwd (1:4.8.1-1ubuntu1) ... Installing new version of config file /etc/default/useradd ... Removing obsolete conffile /etc/cron.daily/passwd ... (Reading database ... 14400 files and directories currently installed.) Preparing to unpack .../00-libgomp1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../01-libatomic1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../02-libasan5_9.2.1-28ubuntu1_armhf.deb ... Unpacking libasan5:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../03-libubsan1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../04-g++-9_9.2.1-28ubuntu1_armhf.deb ... Unpacking g++-9 (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../05-gcc-9_9.2.1-28ubuntu1_armhf.deb ... Unpacking gcc-9 (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../06-libstdc++-9-dev_9.2.1-28ubuntu1_armhf.deb ... Unpacking libstdc++-9-dev:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../07-libgcc-9-dev_9.2.1-28ubuntu1_armhf.deb ... Unpacking libgcc-9-dev:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Selecting previously unselected package libisl22:armhf. Preparing to unpack .../08-libisl22_0.22-2_armhf.deb ... Unpacking libisl22:armhf (0.22-2) ... Preparing to unpack .../09-libcc1-0_10-20200211-1ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../10-binutils-arm-linux-gnueabihf_2.34-1ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../11-libbinutils_2.34-1ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../12-binutils_2.34-1ubuntu1_armhf.deb ... Unpacking binutils (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../13-binutils-common_2.34-1ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Selecting previously unselected package libctf-nobfd0:armhf. Preparing to unpack .../14-libctf-nobfd0_2.34-1ubuntu1_armhf.deb ... Unpacking libctf-nobfd0:armhf (2.34-1ubuntu1) ... Selecting previously unselected package libctf0:armhf. Preparing to unpack .../15-libctf0_2.34-1ubuntu1_armhf.deb ... Unpacking libctf0:armhf (2.34-1ubuntu1) ... Preparing to unpack .../16-cpp-9_9.2.1-28ubuntu1_armhf.deb ... Unpacking cpp-9 (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../17-gcc-9-base_9.2.1-28ubuntu1_armhf.deb ... Unpacking gcc-9-base:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../18-libcom-err2_1.45.3-4ubuntu3_armhf.deb ... Unpacking libcom-err2:armhf (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../19-libss2_1.45.3-4ubuntu3_armhf.deb ... Unpacking libss2:armhf (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../20-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) over (0.0.12) ... Preparing to unpack .../21-libsqlite3-0_3.31.1-1ubuntu1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.31.1-1ubuntu1) over (3.29.0-2) ... Preparing to unpack .../22-openssl_1.1.1d-2ubuntu3_armhf.deb ... Unpacking openssl (1.1.1d-2ubuntu3) over (1.1.1c-1ubuntu4) ... Preparing to unpack .../23-libpng16-16_1.6.37-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.37-2) over (1.6.37-1) ... Preparing to unpack .../24-libassuan0_2.5.3-7ubuntu2_armhf.deb ... Unpacking libassuan0:armhf (2.5.3-7ubuntu2) over (2.5.3-7ubuntu1) ... Preparing to unpack .../25-gpg_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpg (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../26-gpgconf_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpgconf (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../27-gpg-agent_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpg-agent (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../28-liblockfile-bin_1.16-1.1_armhf.deb ... Unpacking liblockfile-bin (1.16-1.1) over (1.15-1) ... Preparing to unpack .../29-liblockfile1_1.16-1.1_armhf.deb ... Unpacking liblockfile1:armhf (1.16-1.1) over (1.15-1) ... Setting up libapparmor1:armhf (2.13.3-7ubuntu1) ... Setting up liblockfile-bin (1.16-1.1) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libssl1.1:armhf (1.1.1d-2ubuntu3) ... Setting up libsqlite3-0:armhf (3.31.1-1ubuntu1) ... Setting up binutils-common:armhf (2.34-1ubuntu1) ... Setting up linux-libc-dev:armhf (5.4.0-14.17) ... Setting up libctf-nobfd0:armhf (2.34-1ubuntu1) ... Setting up libcom-err2:armhf (1.45.3-4ubuntu3) ... Setting up libassuan0:armhf (2.5.3-7ubuntu2) ... Setting up libgomp1:armhf (10-20200211-1ubuntu1) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:armhf (1:2.31-1) ... Setting up libncurses6:armhf (6.1+20191019-1ubuntu1) ... Setting up libpng16-16:armhf (1.6.37-2) ... Setting up libatomic1:armhf (10-20200211-1ubuntu1) ... Setting up libss2:armhf (1.45.3-4ubuntu3) ... Setting up logsave (1.45.3-4ubuntu3) ... Setting up libubsan1:armhf (10-20200211-1ubuntu1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.155-2ubuntu8) ... Setting up mount (2.34-0.1ubuntu6) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:armhf (5.30.0-9) ... Setting up libisl22:armhf (0.22-2) ... Setting up liblockfile1:armhf (1.16-1.1) ... Setting up libjson-c4:armhf (0.13.1+dfsg-6) ... Setting up libbinutils:armhf (2.34-1ubuntu1) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up openssl (1.1.1d-2ubuntu3) ... Setting up libcc1-0:armhf (10-20200211-1ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up libkmod2:armhf (26-3ubuntu1) ... Setting up gcc-9-base:armhf (9.2.1-28ubuntu1) ... Setting up libctf0:armhf (2.34-1ubuntu1) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up e2fsprogs (1.45.3-4ubuntu3) ... Setting up libasan5:armhf (9.2.1-28ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-28ubuntu1) ... Setting up libc6-dev:armhf (2.30-0ubuntu3) ... Setting up libcryptsetup12:armhf (2:2.2.2-3ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.34-1ubuntu1) ... Setting up systemd (244.2-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-1ubuntu1) ... Setting up libgcc-9-dev:armhf (9.2.1-28ubuntu1) ... Setting up gcc-9 (9.2.1-28ubuntu1) ... Setting up systemd-sysv (244.2-1ubuntu1) ... Setting up libstdc++-9-dev:armhf (9.2.1-28ubuntu1) ... Setting up g++-9 (9.2.1-28ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18695081 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18695081 --arch=armhf --dist=focal-proposed --nolog abyss_2.2.4-1.dsc Initiating build PACKAGEBUILD-18695081 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-014.buildd +==============================================================================+ | abyss 2.2.4-1 (armhf) 11 Feb 2020 23:14 | +==============================================================================+ Package: abyss Version: 2.2.4-1 Source Version: 2.2.4-1 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/abyss-83Jpnr/abyss-2.2.4' with '<>' I: NOTICE: Log filtering will replace 'build/abyss-83Jpnr' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18695081/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- abyss_2.2.4-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-X7X5pW/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-X7X5pW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-X7X5pW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-X7X5pW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-X7X5pW/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-X7X5pW/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (90.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-X7X5pW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (67.7 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14413 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), libboost-graph-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl, libsqlite3-dev, pkg-config, help2man Filtered Build-Depends: debhelper-compat (= 12), libboost-graph-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl, libsqlite3-dev, pkg-config, help2man dpkg-deb: building package 'sbuild-build-depends-abyss-dummy' in '/<>/resolver-TOyUoz/apt_archive/sbuild-build-depends-abyss-dummy.deb'. Ign:1 copy:/<>/resolver-TOyUoz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-TOyUoz/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-TOyUoz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-TOyUoz/apt_archive ./ Sources [286 B] Get:5 copy:/<>/resolver-TOyUoz/apt_archive ./ Packages [599 B] Fetched 3004 B in 0s (91.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install abyss build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cpp-8 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-8 gcc-8-base gettext gettext-base gfortran-8 groff-base help2man ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libboost-graph-dev libboost-graph1.71-dev libboost-graph1.71.0 libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization1.71-dev libboost-serialization1.71.0 libboost-test1.71-dev libboost-test1.71.0 libboost1.71-dev libbsd0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfile-stripnondeterminism-perl libgcc-8-dev libgfortran-8-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhtml-parser-perl libhtml-tagset-perl libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu63 libicu65 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsparsehash-dev libsqlite3-dev libsub-override-perl libtext-markdown-perl libtext-multimarkdown-perl libtool libuchardet0 liburi-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation gcc-8-locales dh-make gcc-8-multilib gcc-8-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-8-multilib gfortran-8-doc libcoarrays-dev groff graphviz libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user libdata-dump-perl icu-doc libtool-doc openmpi-doc pciutils sqlite3-doc gcj-jdk libwww-perl m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhttp-message-perl krb5-locales libcoarrays-openmpi-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cpp-8 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-8 gcc-8-base gettext gettext-base gfortran-8 groff-base help2man ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libboost-graph-dev libboost-graph1.71-dev libboost-graph1.71.0 libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization1.71-dev libboost-serialization1.71.0 libboost-test1.71-dev libboost-test1.71.0 libboost1.71-dev libbsd0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfile-stripnondeterminism-perl libgcc-8-dev libgfortran-8-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhtml-parser-perl libhtml-tagset-perl libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu63 libicu65 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsparsehash-dev libsqlite3-dev libsub-override-perl libtext-markdown-perl libtext-multimarkdown-perl libtool libuchardet0 liburi-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf sbuild-build-depends-abyss-dummy 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 76.8 MB of archives. After this operation, 384 MB of additional disk space will be used. Get:1 copy:/<>/resolver-TOyUoz/apt_archive ./ sbuild-build-depends-abyss-dummy 0.invalid.0 [928 B] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf liblocale-gettext-perl armhf 1.07-4 [16.2 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3 [62.1 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4 [777 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.0-2 [1079 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.38-4 [22.4 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf libglib2.0-0 armhf 2.63.3-3 [1117 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libicu63 armhf 63.2-2 [8002 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf libxml2 armhf 2.9.4+dfsg1-8ubuntu3 [554 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10 [46.2 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf libedit2 armhf 3.1-20191231-1 [71.7 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libevent-2.1-7 armhf 2.1.11-stable-1 [119 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5support0 armhf 1.17-6ubuntu4 [28.0 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf libk5crypto3 armhf 1.17-6ubuntu4 [79.4 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf libkeyutils1 armhf 1.6-6ubuntu1 [9172 B] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-3 armhf 1.17-6ubuntu4 [287 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi-krb5-2 armhf 1.17-6ubuntu4 [101 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf libxau6 armhf 1:1.0.9-0ubuntu1 [6612 B] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu1 [9160 B] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libxcb1 armhf 1.13.1-5build1 [41.3 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libx11-data all 2:1.6.8-1 [113 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libx11-6 armhf 2:1.6.8-1 [517 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libxext6 armhf 2:1.3.4-0ubuntu1 [24.2 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf openssh-client armhf 1:8.1p1-5 [550 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11.1 [321 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf automake all 1:1.16.1-4ubuntu6 [522 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10 [412 kB] Get:37 http://ftpmaster.internal/ubuntu focal/universe armhf gcc-8-base armhf 8.3.0-27ubuntu1 [54.7 kB] Get:38 http://ftpmaster.internal/ubuntu focal/universe armhf cpp-8 armhf 8.3.0-27ubuntu1 [6814 kB] Get:39 http://ftpmaster.internal/ubuntu focal/universe armhf libgcc-8-dev armhf 8.3.0-27ubuntu1 [631 kB] Get:40 http://ftpmaster.internal/ubuntu focal/universe armhf gcc-8 armhf 8.3.0-27ubuntu1 [7609 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-12 [195 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:43 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libdebhelper-perl all 12.9ubuntu1 [62.0 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-1 [90.4 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10 [836 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:53 http://ftpmaster.internal/ubuntu focal-proposed/main armhf debhelper all 12.9ubuntu1 [869 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libgfortran5 armhf 10-20200211-1ubuntu1 [251 kB] Get:55 http://ftpmaster.internal/ubuntu focal/universe armhf libgfortran-8-dev armhf 8.3.0-27ubuntu1 [270 kB] Get:56 http://ftpmaster.internal/ubuntu focal/universe armhf gfortran-8 armhf 8.3.0-27ubuntu1 [7257 kB] Get:57 http://ftpmaster.internal/ubuntu focal/universe armhf help2man armhf 1.47.12 [172 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libnl-3-200 armhf 3.4.0-1 [46.1 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libnl-route-3-200 armhf 3.4.0-1 [124 kB] Get:60 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libibverbs1 armhf 27.0-2ubuntu3 [46.3 kB] Get:61 http://ftpmaster.internal/ubuntu focal-proposed/main armhf ibverbs-providers armhf 27.0-2ubuntu3 [22.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libicu65 armhf 65.1-1 [8208 kB] Get:63 http://ftpmaster.internal/ubuntu focal-proposed/main armhf icu-devtools armhf 65.1-1 [167 kB] Get:64 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost1.71-dev armhf 1.71.0-6ubuntu1 [9070 kB] Get:65 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-regex1.71.0 armhf 1.71.0-6ubuntu1 [418 kB] Get:66 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-graph1.71.0 armhf 1.71.0-6ubuntu1 [280 kB] Get:67 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libicu-dev armhf 65.1-1 [9189 kB] Get:68 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-regex1.71-dev armhf 1.71.0-6ubuntu1 [553 kB] Get:69 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost-serialization1.71.0 armhf 1.71.0-6ubuntu1 [284 kB] Get:70 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost-serialization1.71-dev armhf 1.71.0-6ubuntu1 [356 kB] Get:71 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-test1.71.0 armhf 1.71.0-6ubuntu1 [402 kB] Get:72 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-test1.71-dev armhf 1.71.0-6ubuntu1 [514 kB] Get:73 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-graph1.71-dev armhf 1.71.0-6ubuntu1 [319 kB] Get:74 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-graph-dev armhf 1.71.0.0ubuntu1 [3492 B] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libevent-core-2.1-7 armhf 2.1.11-stable-1 [77.7 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libevent-extra-2.1-7 armhf 2.1.11-stable-1 [50.5 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [6904 B] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libevent-openssl-2.1-7 armhf 2.1.11-stable-1 [11.8 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf libevent-dev armhf 2.1.11-stable-1 [246 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libhtml-tagset-perl all 3.20-4 [12.5 kB] Get:81 http://ftpmaster.internal/ubuntu focal-proposed/main armhf liburi-perl all 1.76-2 [77.5 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libhtml-parser-perl armhf 3.72-3build3 [82.6 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libltdl7 armhf 2.4.6-12 [35.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/universe armhf libhwloc15 armhf 2.1.0+dfsg-3ubuntu1 [110 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libltdl-dev armhf 2.4.6-12 [160 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libnl-3-dev armhf 3.4.0-1 [87.1 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libnl-route-3-dev armhf 3.4.0-1 [150 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libpciaccess0 armhf 0.16-0ubuntu1 [15.4 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libxnvctrl0 armhf 440.44-0ubuntu1 [10.2 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf ocl-icd-libopencl1 armhf 2.2.11-1ubuntu1 [28.7 kB] Get:91 http://ftpmaster.internal/ubuntu focal/universe armhf libhwloc-plugins armhf 2.1.0+dfsg-3ubuntu1 [12.5 kB] Get:92 http://ftpmaster.internal/ubuntu focal/universe armhf libpmix2 armhf 3.1.4-1build1 [386 kB] Get:93 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libopenmpi3 armhf 4.0.2-5ubuntu2 [1724 kB] Get:94 http://ftpmaster.internal/ubuntu focal/universe armhf libsparsehash-dev all 2.0.3-1 [71.9 kB] Get:95 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsqlite3-dev armhf 3.31.1-1ubuntu1 [631 kB] Get:96 http://ftpmaster.internal/ubuntu focal/universe armhf libtext-markdown-perl all 1.000031-3 [29.0 kB] Get:97 http://ftpmaster.internal/ubuntu focal/universe armhf libtext-multimarkdown-perl all 1.000035-1 [24.8 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf openmpi-common all 4.0.2-5ubuntu2 [150 kB] Get:99 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf openmpi-bin armhf 4.0.2-5ubuntu2 [67.1 kB] Get:100 http://ftpmaster.internal/ubuntu focal-proposed/main armhf pkg-config armhf 0.29.1-0ubuntu4 [42.6 kB] Get:101 http://ftpmaster.internal/ubuntu focal/universe armhf libhwloc-dev armhf 2.1.0+dfsg-3ubuntu1 [181 kB] Get:102 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libibverbs-dev armhf 27.0-2ubuntu3 [166 kB] Get:103 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libopenmpi-dev armhf 4.0.2-5ubuntu2 [787 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.8 MB in 25s (3094 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14413 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../001-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../002-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../003-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../004-groff-base_1.22.4-4_armhf.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../005-libpipeline1_1.5.2-2build1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../006-man-db_2.9.0-2_armhf.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.38-4_armhf.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../008-libmagic1_1%3a5.38-4_armhf.deb ... Unpacking libmagic1:armhf (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.38-4_armhf.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../010-libelf1_0.176-1.1build1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1build1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../011-libglib2.0-0_2.63.3-3_armhf.deb ... Unpacking libglib2.0-0:armhf (2.63.3-3) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../012-libicu63_63.2-2_armhf.deb ... Unpacking libicu63:armhf (63.2-2) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../013-libxml2_2.9.4+dfsg1-8ubuntu3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-8ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-10_armhf.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../015-libedit2_3.1-20191231-1_armhf.deb ... Unpacking libedit2:armhf (3.1-20191231-1) ... Selecting previously unselected package libevent-2.1-7:armhf. Preparing to unpack .../016-libevent-2.1-7_2.1.11-stable-1_armhf.deb ... Unpacking libevent-2.1-7:armhf (2.1.11-stable-1) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../017-libkrb5support0_1.17-6ubuntu4_armhf.deb ... Unpacking libkrb5support0:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../018-libk5crypto3_1.17-6ubuntu4_armhf.deb ... Unpacking libk5crypto3:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../019-libkeyutils1_1.6-6ubuntu1_armhf.deb ... Unpacking libkeyutils1:armhf (1.6-6ubuntu1) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../020-libkrb5-3_1.17-6ubuntu4_armhf.deb ... Unpacking libkrb5-3:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../021-libgssapi-krb5-2_1.17-6ubuntu4_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../022-libxau6_1%3a1.0.9-0ubuntu1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-0ubuntu1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../023-libxdmcp6_1%3a1.1.3-0ubuntu1_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../024-libxcb1_1.13.1-5build1_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-5build1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../025-libx11-data_2%3a1.6.8-1_all.deb ... Unpacking libx11-data (2:1.6.8-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../026-libx11-6_2%3a1.6.8-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.8-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../027-libxext6_2%3a1.3.4-0ubuntu1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-0ubuntu1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../028-openssh-client_1%3a8.1p1-5_armhf.deb ... Unpacking openssh-client (1:8.1p1-5) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../029-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../030-m4_1.4.18-4_armhf.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../031-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../032-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../033-automake_1%3a1.16.1-4ubuntu6_all.deb ... Unpacking automake (1:1.16.1-4ubuntu6) ... Selecting previously unselected package autopoint. Preparing to unpack .../034-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package gcc-8-base:armhf. Preparing to unpack .../035-gcc-8-base_8.3.0-27ubuntu1_armhf.deb ... Unpacking gcc-8-base:armhf (8.3.0-27ubuntu1) ... Selecting previously unselected package cpp-8. Preparing to unpack .../036-cpp-8_8.3.0-27ubuntu1_armhf.deb ... Unpacking cpp-8 (8.3.0-27ubuntu1) ... Selecting previously unselected package libgcc-8-dev:armhf. Preparing to unpack .../037-libgcc-8-dev_8.3.0-27ubuntu1_armhf.deb ... Unpacking libgcc-8-dev:armhf (8.3.0-27ubuntu1) ... Selecting previously unselected package gcc-8. Preparing to unpack .../038-gcc-8_8.3.0-27ubuntu1_armhf.deb ... Unpacking gcc-8 (8.3.0-27ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../039-libtool_2.4.6-12_all.deb ... Unpacking libtool (2.4.6-12) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../040-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../041-libdebhelper-perl_12.9ubuntu1_all.deb ... Unpacking libdebhelper-perl (12.9ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../042-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../043-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../044-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../045-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.13-5_armhf.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../047-libcroco3_0.6.13-1_armhf.deb ... Unpacking libcroco3:armhf (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../048-gettext_0.19.8.1-10_armhf.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../049-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../050-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../051-debhelper_12.9ubuntu1_all.deb ... Unpacking debhelper (12.9ubuntu1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../052-libgfortran5_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgfortran5:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package libgfortran-8-dev:armhf. Preparing to unpack .../053-libgfortran-8-dev_8.3.0-27ubuntu1_armhf.deb ... Unpacking libgfortran-8-dev:armhf (8.3.0-27ubuntu1) ... Selecting previously unselected package gfortran-8. Preparing to unpack .../054-gfortran-8_8.3.0-27ubuntu1_armhf.deb ... Unpacking gfortran-8 (8.3.0-27ubuntu1) ... Selecting previously unselected package help2man. Preparing to unpack .../055-help2man_1.47.12_armhf.deb ... Unpacking help2man (1.47.12) ... Selecting previously unselected package libnl-3-200:armhf. Preparing to unpack .../056-libnl-3-200_3.4.0-1_armhf.deb ... Unpacking libnl-3-200:armhf (3.4.0-1) ... Selecting previously unselected package libnl-route-3-200:armhf. Preparing to unpack .../057-libnl-route-3-200_3.4.0-1_armhf.deb ... Unpacking libnl-route-3-200:armhf (3.4.0-1) ... Selecting previously unselected package libibverbs1:armhf. Preparing to unpack .../058-libibverbs1_27.0-2ubuntu3_armhf.deb ... Unpacking libibverbs1:armhf (27.0-2ubuntu3) ... Selecting previously unselected package ibverbs-providers:armhf. Preparing to unpack .../059-ibverbs-providers_27.0-2ubuntu3_armhf.deb ... Unpacking ibverbs-providers:armhf (27.0-2ubuntu3) ... Selecting previously unselected package libicu65:armhf. Preparing to unpack .../060-libicu65_65.1-1_armhf.deb ... Unpacking libicu65:armhf (65.1-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../061-icu-devtools_65.1-1_armhf.deb ... Unpacking icu-devtools (65.1-1) ... Selecting previously unselected package libboost1.71-dev:armhf. Preparing to unpack .../062-libboost1.71-dev_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost1.71-dev:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-regex1.71.0:armhf. Preparing to unpack .../063-libboost-regex1.71.0_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-regex1.71.0:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-graph1.71.0:armhf. Preparing to unpack .../064-libboost-graph1.71.0_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-graph1.71.0:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libicu-dev:armhf. Preparing to unpack .../065-libicu-dev_65.1-1_armhf.deb ... Unpacking libicu-dev:armhf (65.1-1) ... Selecting previously unselected package libboost-regex1.71-dev:armhf. Preparing to unpack .../066-libboost-regex1.71-dev_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-regex1.71-dev:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-serialization1.71.0:armhf. Preparing to unpack .../067-libboost-serialization1.71.0_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-serialization1.71.0:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-serialization1.71-dev:armhf. Preparing to unpack .../068-libboost-serialization1.71-dev_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-serialization1.71-dev:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-test1.71.0:armhf. Preparing to unpack .../069-libboost-test1.71.0_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-test1.71.0:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-test1.71-dev:armhf. Preparing to unpack .../070-libboost-test1.71-dev_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-test1.71-dev:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-graph1.71-dev:armhf. Preparing to unpack .../071-libboost-graph1.71-dev_1.71.0-6ubuntu1_armhf.deb ... Unpacking libboost-graph1.71-dev:armhf (1.71.0-6ubuntu1) ... Selecting previously unselected package libboost-graph-dev:armhf. Preparing to unpack .../072-libboost-graph-dev_1.71.0.0ubuntu1_armhf.deb ... Unpacking libboost-graph-dev:armhf (1.71.0.0ubuntu1) ... Selecting previously unselected package libevent-core-2.1-7:armhf. Preparing to unpack .../073-libevent-core-2.1-7_2.1.11-stable-1_armhf.deb ... Unpacking libevent-core-2.1-7:armhf (2.1.11-stable-1) ... Selecting previously unselected package libevent-extra-2.1-7:armhf. Preparing to unpack .../074-libevent-extra-2.1-7_2.1.11-stable-1_armhf.deb ... Unpacking libevent-extra-2.1-7:armhf (2.1.11-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:armhf. Preparing to unpack .../075-libevent-pthreads-2.1-7_2.1.11-stable-1_armhf.deb ... Unpacking libevent-pthreads-2.1-7:armhf (2.1.11-stable-1) ... Selecting previously unselected package libevent-openssl-2.1-7:armhf. Preparing to unpack .../076-libevent-openssl-2.1-7_2.1.11-stable-1_armhf.deb ... Unpacking libevent-openssl-2.1-7:armhf (2.1.11-stable-1) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../077-libevent-dev_2.1.11-stable-1_armhf.deb ... Unpacking libevent-dev (2.1.11-stable-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../078-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../079-liburi-perl_1.76-2_all.deb ... Unpacking liburi-perl (1.76-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../080-libhtml-parser-perl_3.72-3build3_armhf.deb ... Unpacking libhtml-parser-perl (3.72-3build3) ... Selecting previously unselected package libltdl7:armhf. Preparing to unpack .../081-libltdl7_2.4.6-12_armhf.deb ... Unpacking libltdl7:armhf (2.4.6-12) ... Selecting previously unselected package libhwloc15:armhf. Preparing to unpack .../082-libhwloc15_2.1.0+dfsg-3ubuntu1_armhf.deb ... Unpacking libhwloc15:armhf (2.1.0+dfsg-3ubuntu1) ... Selecting previously unselected package libltdl-dev:armhf. Preparing to unpack .../083-libltdl-dev_2.4.6-12_armhf.deb ... Unpacking libltdl-dev:armhf (2.4.6-12) ... Selecting previously unselected package libnl-3-dev:armhf. Preparing to unpack .../084-libnl-3-dev_3.4.0-1_armhf.deb ... Unpacking libnl-3-dev:armhf (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:armhf. Preparing to unpack .../085-libnl-route-3-dev_3.4.0-1_armhf.deb ... Unpacking libnl-route-3-dev:armhf (3.4.0-1) ... Selecting previously unselected package libpciaccess0:armhf. Preparing to unpack .../086-libpciaccess0_0.16-0ubuntu1_armhf.deb ... Unpacking libpciaccess0:armhf (0.16-0ubuntu1) ... Selecting previously unselected package libxnvctrl0:armhf. Preparing to unpack .../087-libxnvctrl0_440.44-0ubuntu1_armhf.deb ... Unpacking libxnvctrl0:armhf (440.44-0ubuntu1) ... Selecting previously unselected package ocl-icd-libopencl1:armhf. Preparing to unpack .../088-ocl-icd-libopencl1_2.2.11-1ubuntu1_armhf.deb ... Unpacking ocl-icd-libopencl1:armhf (2.2.11-1ubuntu1) ... Selecting previously unselected package libhwloc-plugins:armhf. Preparing to unpack .../089-libhwloc-plugins_2.1.0+dfsg-3ubuntu1_armhf.deb ... Unpacking libhwloc-plugins:armhf (2.1.0+dfsg-3ubuntu1) ... Selecting previously unselected package libpmix2:armhf. Preparing to unpack .../090-libpmix2_3.1.4-1build1_armhf.deb ... Unpacking libpmix2:armhf (3.1.4-1build1) ... Selecting previously unselected package libopenmpi3:armhf. Preparing to unpack .../091-libopenmpi3_4.0.2-5ubuntu2_armhf.deb ... Unpacking libopenmpi3:armhf (4.0.2-5ubuntu2) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../092-libsparsehash-dev_2.0.3-1_all.deb ... Unpacking libsparsehash-dev (2.0.3-1) ... Selecting previously unselected package libsqlite3-dev:armhf. Preparing to unpack .../093-libsqlite3-dev_3.31.1-1ubuntu1_armhf.deb ... Unpacking libsqlite3-dev:armhf (3.31.1-1ubuntu1) ... Selecting previously unselected package libtext-markdown-perl. Preparing to unpack .../094-libtext-markdown-perl_1.000031-3_all.deb ... Unpacking libtext-markdown-perl (1.000031-3) ... Selecting previously unselected package libtext-multimarkdown-perl. Preparing to unpack .../095-libtext-multimarkdown-perl_1.000035-1_all.deb ... Unpacking libtext-multimarkdown-perl (1.000035-1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../096-openmpi-common_4.0.2-5ubuntu2_all.deb ... Unpacking openmpi-common (4.0.2-5ubuntu2) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../097-openmpi-bin_4.0.2-5ubuntu2_armhf.deb ... Unpacking openmpi-bin (4.0.2-5ubuntu2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../098-pkg-config_0.29.1-0ubuntu4_armhf.deb ... Unpacking pkg-config (0.29.1-0ubuntu4) ... Selecting previously unselected package libhwloc-dev:armhf. Preparing to unpack .../099-libhwloc-dev_2.1.0+dfsg-3ubuntu1_armhf.deb ... Unpacking libhwloc-dev:armhf (2.1.0+dfsg-3ubuntu1) ... Selecting previously unselected package libibverbs-dev:armhf. Preparing to unpack .../100-libibverbs-dev_27.0-2ubuntu3_armhf.deb ... Unpacking libibverbs-dev:armhf (27.0-2ubuntu3) ... Selecting previously unselected package libopenmpi-dev:armhf. Preparing to unpack .../101-libopenmpi-dev_4.0.2-5ubuntu2_armhf.deb ... Unpacking libopenmpi-dev:armhf (4.0.2-5ubuntu2) ... Selecting previously unselected package sbuild-build-depends-abyss-dummy. Preparing to unpack .../102-sbuild-build-depends-abyss-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-abyss-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up libtext-markdown-perl (1.000031-3) ... Setting up libpciaccess0:armhf (0.16-0ubuntu1) ... Setting up libxau6:armhf (1:1.0.9-0ubuntu1) ... Setting up libkeyutils1:armhf (1.6-6ubuntu1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:armhf (2.63.3-3) ... No schema files found: doing nothing. Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdebhelper-perl (12.9ubuntu1) ... Setting up libboost1.71-dev:armhf (1.71.0-6ubuntu1) ... Setting up libicu65:armhf (65.1-1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libsparsehash-dev (2.0.3-1) ... Setting up libicu63:armhf (63.2-2) ... Setting up libkrb5support0:armhf (1.17-6ubuntu4) ... Setting up autotools-dev (20180224.1) ... Setting up libsqlite3-dev:armhf (3.31.1-1ubuntu1) ... Setting up libx11-data (2:1.6.8-1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libevent-core-2.1-7:armhf (2.1.11-stable-1) ... Setting up libevent-2.1-7:armhf (2.1.11-stable-1) ... Setting up gcc-8-base:armhf (8.3.0-27ubuntu1) ... Setting up autopoint (0.19.8.1-10) ... Setting up icu-devtools (65.1-1) ... Setting up pkg-config (0.29.1-0ubuntu4) ... Setting up libboost-regex1.71.0:armhf (1.71.0-6ubuntu1) ... Setting up libk5crypto3:armhf (1.17-6ubuntu4) ... Setting up libltdl7:armhf (2.4.6-12) ... Setting up libgcc-8-dev:armhf (8.3.0-27ubuntu1) ... Setting up libgfortran5:armhf (10-20200211-1ubuntu1) ... Setting up ocl-icd-libopencl1:armhf (2.2.11-1ubuntu1) ... Setting up libboost-test1.71.0:armhf (1.71.0-6ubuntu1) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libnl-3-200:armhf (3.4.0-1) ... Setting up openmpi-common (4.0.2-5ubuntu2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libboost-serialization1.71.0:armhf (1.71.0-6ubuntu1) ... Setting up libkrb5-3:armhf (1.17-6ubuntu4) ... Setting up libboost-graph1.71.0:armhf (1.71.0-6ubuntu1) ... Setting up cpp-8 (8.3.0-27ubuntu1) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libicu-dev:armhf (65.1-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-8ubuntu3) ... Setting up liburi-perl (1.76-2) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libevent-pthreads-2.1-7:armhf (2.1.11-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libgfortran-8-dev:armhf (8.3.0-27ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up libevent-extra-2.1-7:armhf (2.1.11-stable-1) ... Setting up libxcb1:armhf (1.13.1-5build1) ... Setting up gcc-8 (8.3.0-27ubuntu1) ... Setting up libtool (2.4.6-12) ... Setting up gfortran-8 (8.3.0-27ubuntu1) ... Setting up libedit2:armhf (3.1-20191231-1) ... Setting up libevent-openssl-2.1-7:armhf (2.1.11-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libnl-route-3-200:armhf (3.4.0-1) ... Setting up help2man (1.47.12) ... Setting up libboost-test1.71-dev:armhf (1.71.0-6ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libevent-dev (2.1.11-stable-1) ... Setting up libhwloc15:armhf (2.1.0+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Setting up libboost-regex1.71-dev:armhf (1.71.0-6ubuntu1) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libboost-serialization1.71-dev:armhf (1.71.0-6ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up libnl-3-dev:armhf (3.4.0-1) ... Setting up groff-base (1.22.4-4) ... Setting up libhtml-parser-perl (3.72-3build3) ... Setting up libx11-6:armhf (2:1.6.8-1) ... Setting up libtext-multimarkdown-perl (1.000035-1) ... Setting up libboost-graph1.71-dev:armhf (1.71.0-6ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libboost-graph-dev:armhf (1.71.0.0ubuntu1) ... Setting up libibverbs1:armhf (27.0-2ubuntu3) ... Setting up gettext (0.19.8.1-10) ... Setting up ibverbs-providers:armhf (27.0-2ubuntu3) ... Setting up openssh-client (1:8.1p1-5) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxnvctrl0:armhf (440.44-0ubuntu1) ... Setting up libnl-route-3-dev:armhf (3.4.0-1) ... Setting up libltdl-dev:armhf (2.4.6-12) ... Setting up libhwloc-dev:armhf (2.1.0+dfsg-3ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:armhf (27.0-2ubuntu3) ... Setting up libhwloc-plugins:armhf (2.1.0+dfsg-3ubuntu1) ... Setting up libpmix2:armhf (3.1.4-1build1) ... Setting up libopenmpi3:armhf (4.0.2-5ubuntu2) ... Setting up openmpi-bin (4.0.2-5ubuntu2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:armhf (4.0.2-5ubuntu2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up dh-autoreconf (19) ... Setting up debhelper (12.9ubuntu1) ... Setting up sbuild-build-depends-abyss-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-173-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-28ubuntu1 gcc-8_8.3.0-27ubuntu1 gcc-9_9.2.1-28ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 linux-libc-dev_5.4.0-14.17 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.9 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.34-1ubuntu1 binutils-arm-linux-gnueabihf_2.34-1ubuntu1 binutils-common_2.34-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu6 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-8_8.3.0-27ubuntu1 cpp-9_9.2.1-28ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu3 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu6 file_1:5.38-4 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-28ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200211-1ubuntu1 gcc-8_8.3.0-27ubuntu1 gcc-8-base_8.3.0-27ubuntu1 gcc-9_9.2.1-28ubuntu1 gcc-9-base_9.2.1-28ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran-8_8.3.0-27ubuntu1 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 help2man_1.47.12 hostname_3.23 ibverbs-providers_27.0-2ubuntu3 icu-devtools_65.1-1 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.9 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-28ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200211-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.34-1ubuntu1 libblkid1_2.34-0.1ubuntu6 libboost-graph-dev_1.71.0.0ubuntu1 libboost-graph1.71-dev_1.71.0-6ubuntu1 libboost-graph1.71.0_1.71.0-6ubuntu1 libboost-regex1.71-dev_1.71.0-6ubuntu1 libboost-regex1.71.0_1.71.0-6ubuntu1 libboost-serialization1.71-dev_1.71.0-6ubuntu1 libboost-serialization1.71.0_1.71.0-6ubuntu1 libboost-test1.71-dev_1.71.0-6ubuntu1 libboost-test1.71.0_1.71.0-6ubuntu1 libboost1.71-dev_1.71.0-6ubuntu1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.31-1 libcc1-0_10-20200211-1ubuntu1 libcom-err2_1.45.3-4ubuntu3 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-3ubuntu1 libctf-nobfd0_2.34-1ubuntu1 libctf0_2.34-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu8 libdpkg-perl_1.19.7ubuntu2 libedit2_3.1-20191231-1 libelf1_0.176-1.1build1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libext2fs2_1.45.3-4ubuntu3 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu6 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-8-dev_8.3.0-27ubuntu1 libgcc-9-dev_9.2.1-28ubuntu1 libgcc-s1_10-20200211-1ubuntu1 libgcc1_1:10-20200211-1ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-8-dev_8.3.0-27ubuntu1 libgfortran5_10-20200211-1ubuntu1 libglib2.0-0_2.63.3-3 libgmp10_2:6.2.0+dfsg-3 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200211-1ubuntu1 libgpg-error0_1.36-7ubuntu1 libgssapi-krb5-2_1.17-6ubuntu4 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhtml-parser-perl_3.72-3build3 libhtml-tagset-perl_3.20-4 libhwloc-dev_2.1.0+dfsg-3ubuntu1 libhwloc-plugins_2.1.0+dfsg-3ubuntu1 libhwloc15_2.1.0+dfsg-3ubuntu1 libibverbs-dev_27.0-2ubuntu3 libibverbs1_27.0-2ubuntu3 libicu-dev_65.1-1 libicu63_63.2-2 libicu65_65.1-1 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 libltdl-dev_2.4.6-12 libltdl7_2.4.6-12 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu6 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libopenmpi-dev_4.0.2-5ubuntu2 libopenmpi3_4.0.2-5ubuntu2 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpciaccess0_0.16-0ubuntu1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2build1 libpmix2_3.1.4-1build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu6 libsparsehash-dev_2.0.3-1 libsqlite3-0_3.31.1-1ubuntu1 libsqlite3-dev_3.31.1-1ubuntu1 libss2_1.45.3-4ubuntu3 libssl1.1_1.1.1d-2ubuntu3 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.2-1ubuntu1 libtasn1-6_4.15.0-2 libtext-markdown-perl_1.000031-3 libtext-multimarkdown-perl_1.000035-1 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-12 libubsan1_10-20200211-1ubuntu1 libuchardet0_0.0.6-3 libudev1_244.2-1ubuntu1 libunistring2_0.9.10-2 liburi-perl_1.76-2 libuuid1_2.34-0.1ubuntu6 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.9-0ubuntu1 libxcb1_1.13.1-5build1 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxml2_2.9.4+dfsg1-8ubuntu3 libxnvctrl0_440.44-0ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.0-14.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu1 logsave_1.45.3-4ubuntu3 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu6 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_4.0.2-5ubuntu2 openmpi-common_4.0.2-5ubuntu2 openssh-client_1:8.1p1-5 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu4 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-abyss-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244.2-1ubuntu1 systemd-sysv_244.2-1ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu6 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Feb 11 14:40:03 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./abyss_2.2.4-1.dsc dpkg-source: info: extracting abyss in abyss-2.2.4 dpkg-source: info: unpacking abyss_2.2.4.orig.tar.gz dpkg-source: info: unpacking abyss_2.2.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying abyss-pe.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18695081 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18695081 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18695081 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package abyss dpkg-buildpackage: info: source version 2.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:16: installing './compile' configure.ac:166: installing './config.guess' configure.ac:166: installing './config.sub' configure.ac:10: installing './install-sh' configure.ac:10: installing './missing' ABYSS/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ --with-mpi=/usr/lib/arm-linux-gnueabihf/openmpi ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-mpi=/usr/lib/arm-linux-gnueabihf/openmpi configure: WARNING: unrecognized options: --disable-maintainer-mode checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ supports C++11 features with -std=c++11... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of g++ -std=c++11... none checking for gawk... (cached) mawk checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ -std=c++11 accepts -g... (cached) yes checking for ranlib... ranlib checking for ghc... no ./configure: line 5896: : command not found checking for pandoc... no checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for ANSI C header files... (cached) yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for ptrdiff_t... yes checking for mode_t... yes checking for pid_t... yes checking for size_t... yes checking for ssize_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for std::hash... yes checking for std::tr1::hash... yes checking for std::tr1::tuple... yes checking for dup2... yes checking for gethostname... yes checking for getopt_long... yes checking for getpagesize... yes checking for memset... yes checking for strdup... yes checking for strerror... yes checking for strtoul... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking whether HOST_NAME_MAX is declared... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking if compiler needs -Werror to reject unknown flags... no checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking for MPI_Init in -lmpi... yes checking for sqrt in -lm... yes checking for pow... yes checking for sqrt... yes checking for ceilf... yes checking for dlsym in -ldl... yes checking how to run the C++ preprocessor... g++ -std=c++11 -E checking functional usability... yes checking functional presence... yes checking for functional... yes checking tr1/functional usability... yes checking tr1/functional presence... yes checking for tr1/functional... yes checking boost/functional/hash.hpp usability... yes checking boost/functional/hash.hpp presence... yes checking for boost/functional/hash.hpp... yes checking boost/property_map/property_map.hpp usability... yes checking boost/property_map/property_map.hpp presence... yes checking for boost/property_map/property_map.hpp... yes checking google/sparse_hash_map usability... yes checking google/sparse_hash_map presence... yes checking for google/sparse_hash_map... yes checking unordered_map usability... yes checking unordered_map presence... yes checking for unordered_map... yes checking tr1/unordered_map usability... yes checking tr1/unordered_map presence... yes checking for tr1/unordered_map... yes checking unordered_set usability... yes checking unordered_set presence... yes checking for unordered_set... yes checking tr1/unordered_set usability... yes checking tr1/unordered_set presence... yes checking for tr1/unordered_set... yes checking boost/unordered_set.hpp usability... yes checking boost/unordered_set.hpp presence... yes checking for boost/unordered_set.hpp... yes checking sqlite3.h usability... yes checking sqlite3.h presence... yes checking for sqlite3.h... yes checking for main in -lsqlite3... yes checking for g++ -std=c++11 option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ABYSS/Makefile config.status: creating Align/Makefile config.status: creating Assembly/Makefile config.status: creating Common/Makefile config.status: creating DataLayer/Makefile config.status: creating FMIndex/Makefile config.status: creating Graph/Makefile config.status: creating Parallel/Makefile config.status: creating bin/Makefile config.status: creating doc/Makefile config.status: creating dialign/Makefile config.status: creating kmerprint/Makefile config.status: creating AdjList/Makefile config.status: creating Konnector/Makefile config.status: creating DAssembler/Makefile config.status: creating DistanceEst/Makefile config.status: creating Layout/Makefile config.status: creating Map/Makefile config.status: creating Overlap/Makefile config.status: creating PopBubbles/Makefile config.status: creating Scaffold/Makefile config.status: creating SimpleGraph/Makefile config.status: creating MergePaths/Makefile config.status: creating KAligner/Makefile config.status: creating PairedDBG/Makefile config.status: creating ParseAligns/Makefile config.status: creating PathOverlap/Makefile config.status: creating Consensus/Makefile config.status: creating FilterGraph/Makefile config.status: creating GapFiller/Makefile config.status: creating Sealer/Makefile config.status: creating vendor/gtest-1.7.0/Makefile config.status: creating Unittest/Makefile config.status: creating LogKmerCount/Makefile config.status: creating Bloom/Makefile config.status: creating BloomDBG/Makefile config.status: creating DataBase/Makefile config.status: creating vendor/Makefile config.status: creating vendor/nthash/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in bin make[4]: Entering directory '/<>/bin' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/bin' Making all in doc make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/doc' Making all in Common make[4]: Entering directory '/<>/Common' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-ContigID.o `test -f 'ContigID.cpp' || echo './'`ContigID.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Fcontrol.o `test -f 'Fcontrol.cpp' || echo './'`Fcontrol.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Histogram.o `test -f 'Histogram.cpp' || echo './'`Histogram.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Kmer.o `test -f 'Kmer.cpp' || echo './'`Kmer.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Log.o `test -f 'Log.cpp' || echo './'`Log.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Options.o `test -f 'Options.cpp' || echo './'`Options.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Sequence.o `test -f 'Sequence.cpp' || echo './'`Sequence.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-SignalHandler.o `test -f 'SignalHandler.cpp' || echo './'`SignalHandler.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Timer.o `test -f 'Timer.cpp' || echo './'`Timer.cpp In file included from /usr/include/c++/9/vector:72, from VectorUtil.h:4, from Histogram.h:6, from Histogram.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from VectorUtil.h:4, from Histogram.h:6, from Histogram.cpp:1: /usr/include/c++/9/bits/stl_vector.h: In member function ‘Histogram::Bins Histogram::bin(unsigned int) const’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Uncompress.o `test -f 'Uncompress.cpp' || echo './'`Uncompress.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-city.o `test -f 'city.cc' || echo './'`city.cc rm -f libcommon.a ar cru libcommon.a libcommon_a-ContigID.o libcommon_a-Fcontrol.o libcommon_a-Histogram.o libcommon_a-Kmer.o libcommon_a-Log.o libcommon_a-Options.o libcommon_a-Sequence.o libcommon_a-SignalHandler.o libcommon_a-Timer.o libcommon_a-Uncompress.o libcommon_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcommon.a make[4]: Leaving directory '/<>/Common' Making all in Graph make[4]: Entering directory '/<>/Graph' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_gc-gc.o `test -f 'gc.cc' || echo './'`gc.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_todot-todot.o `test -f 'todot.cc' || echo './'`todot.cc g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-gc abyss_gc-gc.o ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L. -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-todot abyss_todot-todot.o ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Graph' Making all in DataLayer make[4]: Entering directory '/<>/DataLayer' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_fac-fac.o `test -f 'fac.cc' || echo './'`fac.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libdatalayer_a-FastaReader.o `test -f 'FastaReader.cpp' || echo './'`FastaReader.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libdatalayer_a-FastaWriter.o `test -f 'FastaWriter.cpp' || echo './'`FastaWriter.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_tofastq-abyss-tofastq.o `test -f 'abyss-tofastq.cc' || echo './'`abyss-tofastq.cc rm -f libdatalayer.a ar cru libdatalayer.a libdatalayer_a-FastaReader.o libdatalayer_a-FastaWriter.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libdatalayer.a g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-tofastq abyss_tofastq-abyss-tofastq.o libdatalayer.a ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-fac abyss_fac-fac.o libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/DataLayer' Making all in DataBase make[4]: Entering directory '/<>/DataBase' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_db_csv-DB.o `test -f 'DB.cc' || echo './'`DB.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_db_csv-db-csv.o `test -f 'db-csv.cc' || echo './'`db-csv.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libdb_a-DB.o `test -f 'DB.cc' || echo './'`DB.cc g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-db-csv abyss_db_csv-DB.o abyss_db_csv-db-csv.o -lsqlite3 -ldl -lm rm -f libdb.a ar cru libdb.a libdb_a-DB.o ../Common/libcommon.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libdb.a make[4]: Leaving directory '/<>/DataBase' Making all in FMIndex make[4]: Entering directory '/<>/FMIndex' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_count-count.o `test -f 'count.cc' || echo './'`count.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libfmindex_a-bit_array.o `test -f 'bit_array.cc' || echo './'`bit_array.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_dawg-abyss-dawg.o `test -f 'abyss-dawg.cc' || echo './'`abyss-dawg.cc rm -f libfmindex.a ar cru libfmindex.a libfmindex_a-bit_array.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libfmindex.a In file included from /usr/include/c++/9/vector:72, from bit_array.h:24, from BitArrays.h:4, from FMIndex.h:5, from DAWG.h:5, from count.cc:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >}; _Tp = std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >; _Alloc = std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >, std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >*, std::vector, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >, std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >}; _Tp = std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >; _Alloc = std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > >]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >*, std::vector, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >, std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from bit_array.h:24, from BitArrays.h:4, from FMIndex.h:5, from DAWG.h:5, from abyss-dawg.cc:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >}; _Tp = std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >; _Alloc = std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >, std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >*, std::vector, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >, std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >}; _Tp = std::pair, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >; _Alloc = std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > >]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >*, std::vector, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > >, std::allocator, std::pair, std::pair > >, std::pair::out_edge_iterator, boost::graph_traits::out_edge_iterator> > > > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = wat_array::BitArray; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = wat_array::BitArray; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from bit_array.h:24, from BitArrays.h:4, from FMIndex.h:5, from DAWG.h:5, from abyss-dawg.cc:2: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void FMIndex::assign(It, It) [with It = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from abyss-dawg.cc:14: /usr/include/c++/9/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, boost::default_color_type>; _KeyOfValue = std::_Select1st, boost::default_color_type> >; _Compare = std::less >; _Alloc = std::allocator, boost::default_color_type> >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, boost::default_color_type>, std::_Select1st, boost::default_color_type> >, std::less >, std::allocator, boost::default_color_type> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, boost::default_color_type> >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from abyss-dawg.cc:5: /usr/include/boost/graph/depth_first_search.hpp: In function ‘void boost::detail::depth_first_visit_impl(const IncidenceGraph&, typename boost::graph_traits::vertex_descriptor, DFSVisitor&, ColorMap, TerminatorFunc) [with IncidenceGraph = FMIndex; DFSVisitor = DAWGVisitor; ColorMap = boost::associative_property_map, boost::default_color_type> >; TerminatorFunc = boost::detail::nontruth2]’: /usr/include/boost/graph/depth_first_search.hpp:110:10: note: parameter passing for argument of type ‘boost::associative_property_map, boost::default_color_type> >’ changed in GCC 7.1 110 | void depth_first_visit_impl | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from abyss-dawg.cc:14: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, boost::default_color_type>, std::_Select1st, boost::default_color_type> >, std::less >, std::allocator, boost::default_color_type> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, boost::default_color_type> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, boost::default_color_type>, std::_Select1st, boost::default_color_type> >, std::less >, std::allocator, boost::default_color_type> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, boost::default_color_type> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, boost::default_color_type>, std::_Select1st, boost::default_color_type> >, std::less >, std::allocator, boost::default_color_type> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, boost::default_color_type> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, boost::default_color_type>, std::_Select1st, boost::default_color_type> >, std::less >, std::allocator, boost::default_color_type> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, boost::default_color_type> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:67, from bit_array.h:24, from BitArrays.h:4, from FMIndex.h:5, from DAWG.h:5, from count.cc:2: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void FMIndex::assign(It, It) [with It = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from abyss-dawg.cc:5: /usr/include/boost/graph/depth_first_search.hpp: In function ‘int main(int, char**)’: /usr/include/boost/graph/depth_first_search.hpp:355:35: note: parameter passing for argument of type ‘boost::associative_property_map, boost::default_color_type> >’ changed in GCC 7.1 355 | detail::depth_first_visit_impl(g, u, vis, color, detail::nontruth2()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-count abyss_count-count.o libfmindex.a ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-dawg abyss_dawg-abyss-dawg.o libfmindex.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/FMIndex' Making all in Assembly make[4]: Entering directory '/<>/Assembly' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libassembly_a-AssemblyAlgorithms.o `test -f 'AssemblyAlgorithms.cc' || echo './'`AssemblyAlgorithms.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libassembly_a-Options.o `test -f 'Options.cc' || echo './'`Options.cc rm -f libassembly.a ar cru libassembly.a libassembly_a-AssemblyAlgorithms.o libassembly_a-Options.o ../Common/libcommon.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libassembly.a make[4]: Leaving directory '/<>/Assembly' Making all in dialign make[4]: Entering directory '/<>/dialign' gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o museq.o museq.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alig.o alig.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o assemble.o assemble.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o diag.o diag.c assemble.c:40:20: warning: inline function ‘align_diag’ declared but never defined 40 | extern inline char align_diag(struct alignment *algn, struct scr_matrix *smatrix, struct diag* dg); | ^~~~~~~~~~ assemble.c:37:32: warning: inline function ‘find_eqc’ declared but never defined 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); | ^~~~~~~~ assemble.c:25:39: warning: inline function ‘find_diags_guided’ declared but never defined 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, | ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function ‘calc_ov_weight’ declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ assemble.c:13:20: warning: inline function ‘calc_weight’ declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ diag.c:1456:3: warning: ‘real_calc_weight’ is static but used in inline function ‘find_diags_dyn’ which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function ‘calc_ov_weight’ declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function ‘calc_weight’ declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o io.o io.c io.c: In function ‘read_scr_matrix’: io.c:270:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 270 | fscanf( fp, "%i", &is); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 282 | fscanf(fp, "%s\n", rline); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘read_diag_prob_dist’: io.c:371:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o orf.o orf.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parameters.o parameters.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o prob.o prob.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.o translate.c rm -f libdialign.a ar cru libdialign.a alig.o assemble.o diag.o io.o orf.o parameters.o prob.o translate.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libdialign.a gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o dialign museq.o libdialign.a -ldl -lm make[4]: Leaving directory '/<>/dialign' Making all in Align make[4]: Entering directory '/<>/Align' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_align-align.o `test -f 'align.cc' || echo './'`align.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-alignGlobal.o `test -f 'alignGlobal.cc' || echo './'`alignGlobal.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-dialign.o `test -f 'dialign.cpp' || echo './'`dialign.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-dna_diag_prob.o `test -f 'dna_diag_prob.cc' || echo './'`dna_diag_prob.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-smith_waterman.o `test -f 'smith_waterman.cpp' || echo './'`smith_waterman.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_mergepairs-mergepairs.o `test -f 'mergepairs.cc' || echo './'`mergepairs.cc rm -f libalign.a ar cru libalign.a libalign_a-alignGlobal.o libalign_a-dialign.o libalign_a-dna_diag_prob.o libalign_a-smith_waterman.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libalign.a g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-align abyss_align-align.o ./libalign.a ../dialign/libdialign.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-mergepairs abyss_mergepairs-mergepairs.o ./libalign.a ../dialign/libdialign.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Align' Making all in ABYSS make[4]: Entering directory '/<>/ABYSS' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ABYSS-abyss.o `test -f 'abyss.cc' || echo './'`abyss.cc g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ABYSS ABYSS-abyss.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/ABYSS' Making all in Parallel make[4]: Entering directory '/<>/Parallel' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ABYSS_P-parallelAbyss.o `test -f 'parallelAbyss.cpp' || echo './'`parallelAbyss.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ABYSS_P-CommLayer.o `test -f 'CommLayer.cpp' || echo './'`CommLayer.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ABYSS_P-NetworkSequenceCollection.o `test -f 'NetworkSequenceCollection.cpp' || echo './'`NetworkSequenceCollection.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ABYSS_P-MessageBuffer.o `test -f 'MessageBuffer.cpp' || echo './'`MessageBuffer.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ABYSS_P-Messages.o `test -f 'Messages.cpp' || echo './'`Messages.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -DPAIRED_DBG -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg_mpi-parallelAbyss.o `test -f 'parallelAbyss.cpp' || echo './'`parallelAbyss.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -DPAIRED_DBG -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg_mpi-CommLayer.o `test -f 'CommLayer.cpp' || echo './'`CommLayer.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -DPAIRED_DBG -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg_mpi-NetworkSequenceCollection.o `test -f 'NetworkSequenceCollection.cpp' || echo './'`NetworkSequenceCollection.cpp In file included from /usr/include/c++/9/map:60, from ../Assembly/BranchGroup.h:7, from NetworkSequenceCollection.h:7, from NetworkSequenceCollection.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2504:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2504 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘size_t NetworkSequenceCollection::processBranchesTrim()’: /usr/include/c++/9/bits/stl_tree.h:1220:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 1220 | _M_erase_aux(__position); | ^~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘bool NetworkSequenceCollection::processBranchesDiscoverBubbles()’: /usr/include/c++/9/bits/stl_tree.h:1220:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 1220 | _M_erase_aux(__position); | ^~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair NetworkSequenceCollection::processBranchesAssembly(FastaWriter*, unsigned int)’: /usr/include/c++/9/bits/stl_tree.h:1220:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 1220 | _M_erase_aux(__position); | ^~~~~~~~~~~~ g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -DPAIRED_DBG -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg_mpi-MessageBuffer.o `test -f 'MessageBuffer.cpp' || echo './'`MessageBuffer.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -DPAIRED_DBG -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg_mpi-Messages.o `test -f 'Messages.cpp' || echo './'`Messages.cpp In file included from /usr/include/c++/9/map:60, from ../Assembly/BranchGroup.h:7, from NetworkSequenceCollection.h:7, from NetworkSequenceCollection.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2504:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2504 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘size_t NetworkSequenceCollection::processBranchesTrim()’: /usr/include/c++/9/bits/stl_tree.h:1220:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 1220 | _M_erase_aux(__position); | ^~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘bool NetworkSequenceCollection::processBranchesDiscoverBubbles()’: /usr/include/c++/9/bits/stl_tree.h:1220:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 1220 | _M_erase_aux(__position); | ^~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ABYSS-P ABYSS_P-parallelAbyss.o ABYSS_P-CommLayer.o ABYSS_P-NetworkSequenceCollection.o ABYSS_P-MessageBuffer.o ABYSS_P-Messages.o ../Assembly/libassembly.a ../Common/libcommon.a ../DataLayer/libdatalayer.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -lmpi -ldl -lm /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair NetworkSequenceCollection::processBranchesAssembly(FastaWriter*, unsigned int)’: /usr/include/c++/9/bits/stl_tree.h:1220:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 1220 | _M_erase_aux(__position); | ^~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-paired-dbg-mpi abyss_paired_dbg_mpi-parallelAbyss.o abyss_paired_dbg_mpi-CommLayer.o abyss_paired_dbg_mpi-NetworkSequenceCollection.o abyss_paired_dbg_mpi-MessageBuffer.o abyss_paired_dbg_mpi-Messages.o ../Assembly/libassembly.a ../Common/libcommon.a ../DataLayer/libdatalayer.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -lmpi -ldl -lm make[4]: Leaving directory '/<>/Parallel' Making all in Bloom make[4]: Entering directory '/<>/Bloom' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../vendor -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_bloom-bloom.o `test -f 'bloom.cc' || echo './'`bloom.cc g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-bloom abyss_bloom-bloom.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Bloom' Making all in BloomDBG make[4]: Entering directory '/<>/BloomDBG' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../vendor -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_bloom_dbg-bloom-dbg.o `test -f 'bloom-dbg.cc' || echo './'`bloom-dbg.cc g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-bloom-dbg abyss_bloom_dbg-bloom-dbg.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/BloomDBG' Making all in Konnector make[4]: Entering directory '/<>/Konnector' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o konnector-konnector.o `test -f 'konnector.cc' || echo './'`konnector.cc g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o konnector konnector-konnector.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Konnector' Making all in Consensus make[4]: Entering directory '/<>/Consensus' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Consensus-Consensus.o `test -f 'Consensus.cpp' || echo './'`Consensus.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Consensus Consensus-Consensus.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Consensus' Making all in DAssembler make[4]: Entering directory '/<>/DAssembler' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DAssembler-DAssembler.o `test -f 'DAssembler.cpp' || echo './'`DAssembler.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DAssembler-RotatedRead.o `test -f 'RotatedRead.cpp' || echo './'`RotatedRead.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DAssembler DAssembler-DAssembler.o DAssembler-RotatedRead.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/DAssembler' Making all in DistanceEst make[4]: Entering directory '/<>/DistanceEst' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst-DistanceEst.o `test -f 'DistanceEst.cpp' || echo './'`DistanceEst.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst-MLE.o `test -f 'MLE.cpp' || echo './'`MLE.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -D SAM_SEQ_QUAL=1 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst_ssq-DistanceEst.o `test -f 'DistanceEst.cpp' || echo './'`DistanceEst.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -D SAM_SEQ_QUAL=1 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst_ssq-MLE.o `test -f 'MLE.cpp' || echo './'`MLE.cpp In file included from /usr/include/c++/9/vector:72, from MLE.h:4, from MLE.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from MLE.h:4, from MLE.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from MLE.h:4, from MLE.cpp:1: /usr/include/c++/9/bits/stl_vector.h: In function ‘std::pair maximumLikelihoodEstimate(int, int, const Histogram&, const PMF&, unsigned int, unsigned int)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from MLE.h:4, from MLE.cpp:1: /usr/include/c++/9/bits/stl_vector.h: In function ‘std::pair maximumLikelihoodEstimate(int, int, const Histogram&, const PMF&, unsigned int, unsigned int)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DistanceEst DistanceEst-DistanceEst.o DistanceEst-MLE.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DistanceEst-ssq DistanceEst_ssq-DistanceEst.o DistanceEst_ssq-MLE.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/DistanceEst' Making all in KAligner make[4]: Entering directory '/<>/KAligner' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o KAligner-KAligner.o `test -f 'KAligner.cpp' || echo './'`KAligner.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o KAligner-Aligner.o `test -f 'Aligner.cpp' || echo './'`Aligner.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o KAligner KAligner-KAligner.o KAligner-Aligner.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -lpthread -ldl -lm make[4]: Leaving directory '/<>/KAligner' Making all in Layout make[4]: Entering directory '/<>/Layout' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_layout-layout.o `test -f 'layout.cc' || echo './'`layout.cc g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-layout abyss_layout-layout.o ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Layout' Making all in LogKmerCount make[4]: Entering directory '/<>/LogKmerCount' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o logcounter-logcounter.o `test -f 'logcounter.cc' || echo './'`logcounter.cc g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o logcounter logcounter-logcounter.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/LogKmerCount' Making all in Map make[4]: Entering directory '/<>/Map' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_index-index.o `test -f 'index.cc' || echo './'`index.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_map-map.o `test -f 'map.cc' || echo './'`map.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -D SAM_SEQ_QUAL=1 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_map_ssq-map.o `test -f 'map.cc' || echo './'`map.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_overlap-overlap.o `test -f 'overlap.cc' || echo './'`overlap.cc In file included from /usr/include/c++/9/vector:72, from ../DataLayer/FastaIndex.h:11, from index.cc:3: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = wat_array::BitArray; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../DataLayer/FastaIndex.h:11, from index.cc:3: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void FMIndex::assign(It, It) [with It = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void FMIndex::assignBWT(It, It) [with It = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-index abyss_index-index.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm In file included from /usr/include/c++/9/vector:72, from ../Common/Dictionary.h:10, from ../Common/ContigID.h:5, from ../Common/ContigNode.h:5, from ../Common/ContigProperties.h:4, from overlap.cc:10: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {FMIndex::Match}; _Tp = FMIndex::Match; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {FMIndex::Match}; _Tp = FMIndex::Match; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../FMIndex/bit_array.h:24, from ../FMIndex/BitArrays.h:4, from ../FMIndex/FMIndex.h:5, from map.cc:3: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = wat_array::BitArray; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../FMIndex/bit_array.h:24, from ../FMIndex/BitArrays.h:4, from ../FMIndex/FMIndex.h:5, from map.cc:3: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void FMIndex::assign(It, It) [with It = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../FMIndex/bit_array.h:24, from ../FMIndex/BitArrays.h:4, from ../FMIndex/FMIndex.h:5, from map.cc:3: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = wat_array::BitArray; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../FMIndex/bit_array.h:24, from ../FMIndex/BitArrays.h:4, from ../FMIndex/FMIndex.h:5, from map.cc:3: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void FMIndex::assign(It, It) [with It = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = wat_array::BitArray; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../Common/Dictionary.h:10, from ../Common/ContigID.h:5, from ../Common/ContigNode.h:5, from ../Common/ContigProperties.h:4, from overlap.cc:10: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void FMIndex::assign(It, It) [with It = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-map abyss_map-map.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-map-ssq abyss_map_ssq-map.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-overlap abyss_overlap-overlap.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Map' Making all in MergePaths make[4]: Entering directory '/<>/MergePaths' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o MergePaths-MergePaths.o `test -f 'MergePaths.cpp' || echo './'`MergePaths.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Align -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o MergeContigs-MergeContigs.o `test -f 'MergeContigs.cpp' || echo './'`MergeContigs.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Align -I../Common -I../DataLayer -I../SimpleGraph -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PathConsensus-PathConsensus.o `test -f 'PathConsensus.cpp' || echo './'`PathConsensus.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o MergeContigs MergeContigs-MergeContigs.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PathConsensus PathConsensus-PathConsensus.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a ../dialign/libdialign.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o MergePaths MergePaths-MergePaths.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/MergePaths' Making all in Overlap make[4]: Entering directory '/<>/Overlap' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Overlap-Overlap.o `test -f 'Overlap.cpp' || echo './'`Overlap.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Overlap Overlap-Overlap.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Overlap' Making all in PairedDBG make[4]: Entering directory '/<>/PairedDBG' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -DPAIRED_DBG -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg-abyss-paired-dbg.o `test -f 'abyss-paired-dbg.cc' || echo './'`abyss-paired-dbg.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -DPAIRED_DBG -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg-KmerPair.o `test -f 'KmerPair.cc' || echo './'`KmerPair.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o KmerPair.o KmerPair.cc rm -f libpaireddbg.a ar cru libpaireddbg.a KmerPair.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpaireddbg.a g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-paired-dbg abyss_paired_dbg-abyss-paired-dbg.o abyss_paired_dbg-KmerPair.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm make[4]: Leaving directory '/<>/PairedDBG' Making all in ParseAligns make[4]: Entering directory '/<>/ParseAligns' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_fixmate-abyss-fixmate.o `test -f 'abyss-fixmate.cc' || echo './'`abyss-fixmate.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -D SAM_SEQ_QUAL=1 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_fixmate_ssq-abyss-fixmate.o `test -f 'abyss-fixmate.cc' || echo './'`abyss-fixmate.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ParseAligns-ParseAligns.o `test -f 'ParseAligns.cpp' || echo './'`ParseAligns.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ParseAligns ParseAligns-ParseAligns.o ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-fixmate abyss_fixmate-abyss-fixmate.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-fixmate-ssq abyss_fixmate_ssq-abyss-fixmate.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/ParseAligns' Making all in PathOverlap make[4]: Entering directory '/<>/PathOverlap' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PathOverlap-PathOverlap.o `test -f 'PathOverlap.cpp' || echo './'`PathOverlap.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PathOverlap PathOverlap-PathOverlap.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/PathOverlap' Making all in PopBubbles make[4]: Entering directory '/<>/PopBubbles' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Align -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PopBubbles-PopBubbles.o `test -f 'PopBubbles.cpp' || echo './'`PopBubbles.cpp g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PopBubbles PopBubbles-PopBubbles.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a ../dialign/libdialign.a -ldl -lm make[4]: Leaving directory '/<>/PopBubbles' Making all in Scaffold make[4]: Entering directory '/<>/Scaffold' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_scaffold-scaffold.o `test -f 'scaffold.cc' || echo './'`scaffold.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_junction-junction.o `test -f 'junction.cc' || echo './'`junction.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_longseqdist-longseqdist.o `test -f 'longseqdist.cpp' || echo './'`longseqdist.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_drawgraph-drawgraph.o `test -f 'drawgraph.cc' || echo './'`drawgraph.cc In file included from /usr/include/c++/9/vector:72, from ../Common/Dictionary.h:10, from ../Common/ContigID.h:5, from ../Common/ContigNode.h:5, from ../Common/ContigProperties.h:4, from drawgraph.cc:10: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/type_traits/is_nothrow_swappable.hpp:33, from /usr/include/boost/type_traits.hpp:120, from /usr/include/boost/pending/property.hpp:13, from /usr/include/boost/graph/properties.hpp:15, from ../Graph/Properties.h:6, from ../Common/ContigNode.h:6, from ../Common/ContigProperties.h:4, from drawgraph.cc:10: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/type_traits/is_nothrow_swappable.hpp:33, from /usr/include/boost/type_traits.hpp:120, from /usr/include/boost/pending/property.hpp:13, from /usr/include/boost/graph/properties.hpp:15, from ../Graph/Properties.h:6, from ../Common/ContigNode.h:6, from ../Common/ContigProperties.h:4, from drawgraph.cc:10: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/type_traits/is_nothrow_swappable.hpp:33, from /usr/include/boost/type_traits.hpp:120, from /usr/include/boost/pending/property.hpp:13, from /usr/include/boost/graph/properties.hpp:15, from ../Graph/Properties.h:6, from ../Common/ContigNode.h:6, from ../Common/ContigProperties.h:4, from drawgraph.cc:10: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1921 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../Common/Dictionary.h:10, from ../Common/ContigID.h:5, from ../Common/ContigNode.h:5, from ../Common/ContigProperties.h:4, from drawgraph.cc:10: /usr/include/c++/9/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/type_traits/is_nothrow_swappable.hpp:33, from /usr/include/boost/type_traits.hpp:120, from /usr/include/boost/pending/property.hpp:13, from /usr/include/boost/graph/properties.hpp:15, from ../Graph/Properties.h:6, from ../Common/ContigNode.h:6, from ../Common/ContigProperties.h:4, from drawgraph.cc:10: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-longseqdist abyss_longseqdist-longseqdist.o ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-drawgraph abyss_drawgraph-drawgraph.o ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-junction abyss_junction-junction.o ../Common/libcommon.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-scaffold abyss_scaffold-scaffold.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Scaffold' Making all in SimpleGraph make[4]: Entering directory '/<>/SimpleGraph' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -Wno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o SimpleGraph-SimpleGraph.o `test -f 'SimpleGraph.cpp' || echo './'`SimpleGraph.cpp g++ -std=c++11 -Wall -Wextra -Werror -Wno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o SimpleGraph SimpleGraph-SimpleGraph.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -lpthread -ldl -lm make[4]: Leaving directory '/<>/SimpleGraph' Making all in kmerprint make[4]: Entering directory '/<>/kmerprint' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Assembly -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o kmerprint-kmerprint.o `test -f 'kmerprint.cc' || echo './'`kmerprint.cc g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o kmerprint kmerprint-kmerprint.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/kmerprint' Making all in FilterGraph make[4]: Entering directory '/<>/FilterGraph' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_filtergraph-FilterGraph.o `test -f 'FilterGraph.cc' || echo './'`FilterGraph.cc g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-filtergraph abyss_filtergraph-FilterGraph.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/FilterGraph' Making all in GapFiller make[4]: Entering directory '/<>/GapFiller' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../Align -D SAM_SEQ_QUAL=1 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_gapfill-gapfill.o `test -f 'gapfill.cpp' || echo './'`gapfill.cpp g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-gapfill abyss_gapfill-gapfill.o ../Align/libalign.a ../dialign/libdialign.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/GapFiller' Making all in Sealer make[4]: Entering directory '/<>/Sealer' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_sealer-sealer.o `test -f 'sealer.cc' || echo './'`sealer.cc g++ -std=c++11 -Wall -Wextra -Werror -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-sealer abyss_sealer-sealer.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Sealer' Making all in AdjList make[4]: Entering directory '/<>/AdjList' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -DPAIRED_DBG -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o AdjList-AdjList.o `test -f 'AdjList.cpp' || echo './'`AdjList.cpp g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o AdjList AdjList-AdjList.o ../DataLayer/libdatalayer.a ../Common/libcommon.a ../PairedDBG/libpaireddbg.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm make[4]: Leaving directory '/<>/AdjList' Making all in vendor make[4]: Entering directory '/<>/vendor' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/vendor' Making all in vendor/nthash make[4]: Entering directory '/<>/vendor/nthash' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/vendor/nthash' Making all in vendor/gtest-1.7.0 make[4]: Entering directory '/<>/vendor/gtest-1.7.0' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/vendor/gtest-1.7.0' Making all in Unittest make[4]: Entering directory '/<>/Unittest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/Unittest' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' markdown README.md > README.html make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in bin make[2]: Entering directory '/<>/bin' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/bin' Making check in doc make[2]: Entering directory '/<>/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/doc' Making check in Common make[2]: Entering directory '/<>/Common' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Common' Making check in Graph make[2]: Entering directory '/<>/Graph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Graph' Making check in DataLayer make[2]: Entering directory '/<>/DataLayer' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DataLayer' Making check in DataBase make[2]: Entering directory '/<>/DataBase' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DataBase' Making check in FMIndex make[2]: Entering directory '/<>/FMIndex' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/FMIndex' Making check in Assembly make[2]: Entering directory '/<>/Assembly' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Assembly' Making check in dialign make[2]: Entering directory '/<>/dialign' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/dialign' Making check in Align make[2]: Entering directory '/<>/Align' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Align' Making check in ABYSS make[2]: Entering directory '/<>/ABYSS' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/ABYSS' Making check in Parallel make[2]: Entering directory '/<>/Parallel' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Parallel' Making check in Bloom make[2]: Entering directory '/<>/Bloom' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Bloom' Making check in BloomDBG make[2]: Entering directory '/<>/BloomDBG' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/BloomDBG' Making check in Konnector make[2]: Entering directory '/<>/Konnector' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Konnector' Making check in Consensus make[2]: Entering directory '/<>/Consensus' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Consensus' Making check in DAssembler make[2]: Entering directory '/<>/DAssembler' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DAssembler' Making check in DistanceEst make[2]: Entering directory '/<>/DistanceEst' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DistanceEst' Making check in KAligner make[2]: Entering directory '/<>/KAligner' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/KAligner' Making check in Layout make[2]: Entering directory '/<>/Layout' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Layout' Making check in LogKmerCount make[2]: Entering directory '/<>/LogKmerCount' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/LogKmerCount' Making check in Map make[2]: Entering directory '/<>/Map' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Map' Making check in MergePaths make[2]: Entering directory '/<>/MergePaths' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/MergePaths' Making check in Overlap make[2]: Entering directory '/<>/Overlap' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Overlap' Making check in PairedDBG make[2]: Entering directory '/<>/PairedDBG' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/PairedDBG' Making check in ParseAligns make[2]: Entering directory '/<>/ParseAligns' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/ParseAligns' Making check in PathOverlap make[2]: Entering directory '/<>/PathOverlap' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/PathOverlap' Making check in PopBubbles make[2]: Entering directory '/<>/PopBubbles' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/PopBubbles' Making check in Scaffold make[2]: Entering directory '/<>/Scaffold' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Scaffold' Making check in SimpleGraph make[2]: Entering directory '/<>/SimpleGraph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/SimpleGraph' Making check in kmerprint make[2]: Entering directory '/<>/kmerprint' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/kmerprint' Making check in FilterGraph make[2]: Entering directory '/<>/FilterGraph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/FilterGraph' Making check in GapFiller make[2]: Entering directory '/<>/GapFiller' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/GapFiller' Making check in Sealer make[2]: Entering directory '/<>/Sealer' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Sealer' Making check in AdjList make[2]: Entering directory '/<>/AdjList' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/AdjList' Making check in vendor make[2]: Entering directory '/<>/vendor' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/vendor' Making check in vendor/nthash make[2]: Entering directory '/<>/vendor/nthash' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/vendor/nthash' Making check in vendor/gtest-1.7.0 make[2]: Entering directory '/<>/vendor/gtest-1.7.0' make libgtest.a libgtest_main.a make[3]: Entering directory '/<>/vendor/gtest-1.7.0' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -isystem ../../vendor/gtest-1.7.0/include -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o src/libgtest_a-gtest-all.o `test -f 'src/gtest-all.cc' || echo './'`src/gtest-all.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -isystem ../../vendor/gtest-1.7.0/include -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o src/libgtest_main_a-gtest_main.o `test -f 'src/gtest_main.cc' || echo './'`src/gtest_main.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -isystem ../../vendor/gtest-1.7.0/include -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o src/libgtest_main_a-gtest-all.o `test -f 'src/gtest-all.cc' || echo './'`src/gtest-all.cc rm -f libgtest_main.a ar cru libgtest_main.a src/libgtest_main_a-gtest_main.o src/libgtest_main_a-gtest-all.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libgtest_main.a rm -f libgtest.a ar cru libgtest.a src/libgtest_a-gtest-all.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libgtest.a make[3]: Leaving directory '/<>/vendor/gtest-1.7.0' make[2]: Leaving directory '/<>/vendor/gtest-1.7.0' Making check in Unittest make[2]: Entering directory '/<>/Unittest' make common_stringutil common_histogram common_bitutil common_kmer common_sequence common_KmerIterator common_sam BloomFilter Konnector_DBGBloom Konnector_DBGBloomAlgorithms graph_ConstrainedBFSVisitor graph_BidirectionalBFS graph_AllPathsSearch graph_HashGraph graph_ConstrainedBidiBFSVisitor graph_ExtendPath graph_DotIO graph_UndirectedGraph Konnector_konnector DBG_LoadAlgorithm PairedDBG_LoadAlgorithm PairedDBG_KmerPair PairedDBG_Dinuc PairedDBG_BranchRecord BloomDBG_BloomDBG BloomDBG_RollingHash BloomDBG_RollingHashIterator BloomDBG_HashAgnosticCascadingBloom BloomDBG_CountingBloomFilter BloomDBG_RollingBloomDBG BloomDBG_MaskedKmer BloomDBG_SpacedSeed BloomDBG_LightweightKmer make[3]: Entering directory '/<>/Unittest' g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/StringUtilTest.o Common/StringUtilTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/HistogramTest.o Common/HistogramTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/BitUtilTest.o Common/BitUtilTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/KmerTest.o Common/KmerTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/Sequence.o Common/Sequence.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/KmerIteratorTest.o Common/KmerIteratorTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/SAM.o Common/SAM.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/BloomFilter-BloomFilter.o `test -f 'Konnector/BloomFilter.cc' || echo './'`Konnector/BloomFilter.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/DBGBloom-DBGBloomTest.o `test -f 'Konnector/DBGBloomTest.cpp' || echo './'`Konnector/DBGBloomTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/DBGBloomAlgorithms-DBGBloomAlgorithmsTest.o `test -f 'Konnector/DBGBloomAlgorithmsTest.cpp' || echo './'`Konnector/DBGBloomAlgorithmsTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_ConstrainedBFSVisitor-ConstrainedBFSVisitorTest.o `test -f 'Graph/ConstrainedBFSVisitorTest.cpp' || echo './'`Graph/ConstrainedBFSVisitorTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_BidirectionalBFS-BidirectionalBFSTest.o `test -f 'Graph/BidirectionalBFSTest.cpp' || echo './'`Graph/BidirectionalBFSTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_AllPathsSearch-AllPathsSearchTest.o `test -f 'Graph/AllPathsSearchTest.cpp' || echo './'`Graph/AllPathsSearchTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_HashGraph-HashGraphTest.o `test -f 'Graph/HashGraphTest.cpp' || echo './'`Graph/HashGraphTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_ConstrainedBidiBFSVisitor-ConstrainedBidiBFSVisitorTest.o `test -f 'Graph/ConstrainedBidiBFSVisitorTest.cpp' || echo './'`Graph/ConstrainedBidiBFSVisitorTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_ExtendPath-ExtendPathTest.o `test -f 'Graph/ExtendPathTest.cpp' || echo './'`Graph/ExtendPathTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_DotIO-DotIOTest.o `test -f 'Graph/DotIOTest.cpp' || echo './'`Graph/DotIOTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/UndirectedGraphTest.o Graph/UndirectedGraphTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/konnector-konnectorTest.o `test -f 'Konnector/konnectorTest.cpp' || echo './'`Konnector/konnectorTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../DataLayer -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DBG/LoadAlgorithm-LoadAlgorithmTest.o `test -f 'DBG/LoadAlgorithmTest.cpp' || echo './'`DBG/LoadAlgorithmTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../DataLayer -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/LoadAlgorithm-LoadAlgorithmTest.o `test -f 'PairedDBG/LoadAlgorithmTest.cpp' || echo './'`PairedDBG/LoadAlgorithmTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../DataLayer -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/KmerPair-KmerPairTest.o `test -f 'PairedDBG/KmerPairTest.cc' || echo './'`PairedDBG/KmerPairTest.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../DataLayer -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/Dinuc-DinucTest.o `test -f 'PairedDBG/DinucTest.cc' || echo './'`PairedDBG/DinucTest.cc g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../DataLayer -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/BranchRecord-BranchRecordTest.o `test -f 'PairedDBG/BranchRecordTest.cpp' || echo './'`PairedDBG/BranchRecordTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/BloomDBG-BloomDBGTest.o `test -f 'BloomDBG/BloomDBGTest.cpp' || echo './'`BloomDBG/BloomDBGTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/RollingHashTest.o BloomDBG/RollingHashTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/RollingHashIteratorTest.o BloomDBG/RollingHashIteratorTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/HashAgnosticCascadingBloom-HashAgnosticCascadingBloomTest.o `test -f 'BloomDBG/HashAgnosticCascadingBloomTest.cpp' || echo './'`BloomDBG/HashAgnosticCascadingBloomTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I../Common -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/CountingBloomFilter-CountingBloomFilterTest.o `test -f 'BloomDBG/CountingBloomFilterTest.cpp' || echo './'`BloomDBG/CountingBloomFilterTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/RollingBloomDBG-RollingBloomDBGTest.o `test -f 'BloomDBG/RollingBloomDBGTest.cpp' || echo './'`BloomDBG/RollingBloomDBGTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/MaskedKmerTest.o BloomDBG/MaskedKmerTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/SpacedSeedTest.o BloomDBG/SpacedSeedTest.cpp g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../vendor/gtest-1.7.0/include -DGTEST_USE_OWN_TR1_TUPLE=0 -I/<> -isystem/usr/lib/arm-linux-gnueabihf/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/LightweightKmerTest.o BloomDBG/LightweightKmerTest.cpp g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_stringutil Common/StringUtilTest.o ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_histogram Common/HistogramTest.o ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_bitutil Common/BitUtilTest.o ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_kmer Common/KmerTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_sequence Common/Sequence.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_KmerIterator Common/KmerIteratorTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_sam Common/SAM.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomFilter Konnector/BloomFilter-BloomFilter.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Konnector_DBGBloom Konnector/DBGBloom-DBGBloomTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Konnector_DBGBloomAlgorithms Konnector/DBGBloomAlgorithms-DBGBloomAlgorithmsTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_ConstrainedBFSVisitor Graph/graph_ConstrainedBFSVisitor-ConstrainedBFSVisitorTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_BidirectionalBFS Graph/graph_BidirectionalBFS-BidirectionalBFSTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_AllPathsSearch Graph/graph_AllPathsSearch-AllPathsSearchTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_HashGraph Graph/graph_HashGraph-HashGraphTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_ConstrainedBidiBFSVisitor Graph/graph_ConstrainedBidiBFSVisitor-ConstrainedBidiBFSVisitorTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_ExtendPath Graph/graph_ExtendPath-ExtendPathTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_DotIO Graph/graph_DotIO-DotIOTest.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_UndirectedGraph Graph/UndirectedGraphTest.o ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Konnector_konnector Konnector/konnector-konnectorTest.o ../Align/libalign.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DBG_LoadAlgorithm DBG/LoadAlgorithm-LoadAlgorithmTest.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_LoadAlgorithm PairedDBG/LoadAlgorithm-LoadAlgorithmTest.o ../PairedDBG/libpaireddbg.a ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_KmerPair PairedDBG/KmerPair-KmerPairTest.o ../PairedDBG/libpaireddbg.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_Dinuc PairedDBG/Dinuc-DinucTest.o ../PairedDBG/libpaireddbg.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_BranchRecord PairedDBG/BranchRecord-BranchRecordTest.o ../PairedDBG/libpaireddbg.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm In file included from /usr/include/c++/9/unordered_map:46, from ../vendor/btl_bloomfilter/vendor/cpptoml/include/cpptoml.h:22, from ../vendor/btl_bloomfilter/BloomFilter.hpp:13, from ../BloomDBG/RollingBloomDBG.h:15, from BloomDBG/RollingBloomDBGTest.cpp:1: /usr/include/c++/9/bits/hashtable.h: In member function ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = RollingBloomDBGVertex; _Value = RollingBloomDBGVertex; _Alloc = std::allocator; _ExtractKey = std::__detail::_Identity; _Equal = std::equal_to; _H1 = std::hash; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’: /usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type ‘std::_Hashtable, std::__detail::_Identity, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator’} changed in GCC 7.1 1849 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1850 | _H1, _H2, _Hash, _RehashPolicy, _Traits>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_BloomDBG BloomDBG/BloomDBG-BloomDBGTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_RollingHash BloomDBG/RollingHashTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_RollingHashIterator BloomDBG/RollingHashIteratorTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_HashAgnosticCascadingBloom BloomDBG/HashAgnosticCascadingBloom-HashAgnosticCascadingBloomTest.o ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_CountingBloomFilter BloomDBG/CountingBloomFilter-CountingBloomFilterTest.o ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_MaskedKmer BloomDBG/MaskedKmerTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_SpacedSeed BloomDBG/SpacedSeedTest.o ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_LightweightKmer BloomDBG/LightweightKmerTest.o ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm /usr/include/c++/9/bits/hashtable.h: In member function ‘virtual void RollingBloomDBGTest_out_edge_iterator_Test::TestBody()’: /usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type ‘std::_Hashtable, std::__detail::_Identity, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator’} changed in GCC 7.1 768 | { return erase(const_iterator(__it)); } | ^ /usr/include/c++/9/bits/hashtable.h: In member function ‘virtual void RollingBloomDBGSpacedSeedTest_out_edge_iterator_Test::TestBody()’: /usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type ‘std::_Hashtable, std::__detail::_Identity, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator’} changed in GCC 7.1 768 | { return erase(const_iterator(__it)); } | ^ /usr/include/c++/9/bits/hashtable.h: In member function ‘virtual void RollingBloomDBGTest_adjacency_iterator_Test::TestBody()’: /usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type ‘std::_Hashtable, std::__detail::_Identity, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator’} changed in GCC 7.1 768 | { return erase(const_iterator(__it)); } | ^ /usr/include/c++/9/bits/hashtable.h: In member function ‘virtual void RollingBloomDBGTest_in_edges_Test::TestBody()’: /usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type ‘std::_Hashtable, std::__detail::_Identity, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator’} changed in GCC 7.1 768 | { return erase(const_iterator(__it)); } | ^ g++ -std=c++11 -Wall -Wextra -Werror -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_RollingBloomDBG BloomDBG/RollingBloomDBG-RollingBloomDBGTest.o ../DataLayer/libdatalayer.a ../Common/libcommon.a ../vendor/gtest-1.7.0/libgtest_main.a -ldl -lm make[3]: Leaving directory '/<>/Unittest' make check-TESTS make[3]: Entering directory '/<>/Unittest' make[4]: Entering directory '/<>/Unittest' PASS: common_histogram PASS: common_stringutil PASS: common_kmer PASS: common_bitutil PASS: common_KmerIterator PASS: common_sequence PASS: BloomFilter PASS: Konnector_DBGBloom PASS: common_sam PASS: graph_ConstrainedBFSVisitor PASS: graph_AllPathsSearch PASS: Konnector_DBGBloomAlgorithms PASS: graph_BidirectionalBFS PASS: graph_ConstrainedBidiBFSVisitor PASS: graph_ExtendPath PASS: graph_HashGraph PASS: graph_DotIO PASS: graph_UndirectedGraph PASS: Konnector_konnector PASS: PairedDBG_KmerPair PASS: PairedDBG_Dinuc PASS: PairedDBG_BranchRecord PASS: BloomDBG_BloomDBG PASS: BloomDBG_RollingHash PASS: BloomDBG_RollingHashIterator PASS: BloomDBG_CountingBloomFilter PASS: BloomDBG_HashAgnosticCascadingBloom PASS: BloomDBG_RollingBloomDBG PASS: BloomDBG_MaskedKmer PASS: BloomDBG_LightweightKmer PASS: BloomDBG_SpacedSeed PASS: PairedDBG_LoadAlgorithm PASS: DBG_LoadAlgorithm ============================================================================ Testsuite summary for ABySS 2.2.4 ============================================================================ # TOTAL: 33 # PASS: 33 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/Unittest' make[3]: Leaving directory '/<>/Unittest' make[2]: Leaving directory '/<>/Unittest' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --destdir=debian/tmp make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in bin make[3]: Entering directory '/<>/bin' make[4]: Entering directory '/<>/bin' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-bowtie abyss-bowtie2 abyss-bwa abyss-bwasw abyss-bwamem abyss-fatoagp abyss-kaligner abyss-pe abyss-samtoafg abyss-tabtomd abyss-bloom-dist.mk abyss-dida abyss-stack-size '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/bin' make[3]: Leaving directory '/<>/bin' Making install in doc make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/abyss' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 flowchart.pdf flowchart_simplified.pdf '/<>/debian/tmp/usr/share/doc/abyss' /usr/bin/install -c -m 644 ABYSS.1 abyss-pe.1 abyss-tofastq.1 '/<>/debian/tmp/usr/share/man/man1' make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' Making install in Common make[3]: Entering directory '/<>/Common' make[4]: Entering directory '/<>/Common' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/Common' make[3]: Leaving directory '/<>/Common' Making install in Graph make[3]: Entering directory '/<>/Graph' make[4]: Entering directory '/<>/Graph' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-gc abyss-todot '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Graph' make[3]: Leaving directory '/<>/Graph' Making install in DataLayer make[3]: Entering directory '/<>/DataLayer' make[4]: Entering directory '/<>/DataLayer' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-fac abyss-tofastq '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DataLayer' make[3]: Leaving directory '/<>/DataLayer' Making install in DataBase make[3]: Entering directory '/<>/DataBase' make[4]: Entering directory '/<>/DataBase' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-db-txt '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-db-csv '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DataBase' make[3]: Leaving directory '/<>/DataBase' Making install in FMIndex make[3]: Entering directory '/<>/FMIndex' make[4]: Entering directory '/<>/FMIndex' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/FMIndex' make[3]: Leaving directory '/<>/FMIndex' Making install in Assembly make[3]: Entering directory '/<>/Assembly' make[4]: Entering directory '/<>/Assembly' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/Assembly' make[3]: Leaving directory '/<>/Assembly' Making install in dialign make[3]: Entering directory '/<>/dialign' make[4]: Entering directory '/<>/dialign' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/dialign' make[3]: Leaving directory '/<>/dialign' Making install in Align make[3]: Entering directory '/<>/Align' make[4]: Entering directory '/<>/Align' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-align abyss-mergepairs '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Align' make[3]: Leaving directory '/<>/Align' Making install in ABYSS make[3]: Entering directory '/<>/ABYSS' make[4]: Entering directory '/<>/ABYSS' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c ABYSS '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/ABYSS' make[3]: Leaving directory '/<>/ABYSS' Making install in Parallel make[3]: Entering directory '/<>/Parallel' make[4]: Entering directory '/<>/Parallel' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c ABYSS-P abyss-paired-dbg-mpi '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Parallel' make[3]: Leaving directory '/<>/Parallel' Making install in Bloom make[3]: Entering directory '/<>/Bloom' make[4]: Entering directory '/<>/Bloom' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-bloom '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Bloom' make[3]: Leaving directory '/<>/Bloom' Making install in BloomDBG make[3]: Entering directory '/<>/BloomDBG' make[4]: Entering directory '/<>/BloomDBG' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-bloom-dbg '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/BloomDBG' make[3]: Leaving directory '/<>/BloomDBG' Making install in Konnector make[3]: Entering directory '/<>/Konnector' make[4]: Entering directory '/<>/Konnector' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c konnector '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Konnector' make[3]: Leaving directory '/<>/Konnector' Making install in Consensus make[3]: Entering directory '/<>/Consensus' make[4]: Entering directory '/<>/Consensus' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c Consensus '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Consensus' make[3]: Leaving directory '/<>/Consensus' Making install in DAssembler make[3]: Entering directory '/<>/DAssembler' make[4]: Entering directory '/<>/DAssembler' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c DAssembler '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DAssembler' make[3]: Leaving directory '/<>/DAssembler' Making install in DistanceEst make[3]: Entering directory '/<>/DistanceEst' make[4]: Entering directory '/<>/DistanceEst' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c DistanceEst DistanceEst-ssq '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DistanceEst' make[3]: Leaving directory '/<>/DistanceEst' Making install in KAligner make[3]: Entering directory '/<>/KAligner' make[4]: Entering directory '/<>/KAligner' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c KAligner '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/KAligner' make[3]: Leaving directory '/<>/KAligner' Making install in Layout make[3]: Entering directory '/<>/Layout' make[4]: Entering directory '/<>/Layout' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-layout '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Layout' make[3]: Leaving directory '/<>/Layout' Making install in LogKmerCount make[3]: Entering directory '/<>/LogKmerCount' make[4]: Entering directory '/<>/LogKmerCount' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c logcounter '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/LogKmerCount' make[3]: Leaving directory '/<>/LogKmerCount' Making install in Map make[3]: Entering directory '/<>/Map' make[4]: Entering directory '/<>/Map' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-index abyss-map abyss-map-ssq abyss-overlap '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Map' make[3]: Leaving directory '/<>/Map' Making install in MergePaths make[3]: Entering directory '/<>/MergePaths' make[4]: Entering directory '/<>/MergePaths' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c MergePaths MergeContigs PathConsensus '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/MergePaths' make[3]: Leaving directory '/<>/MergePaths' Making install in Overlap make[3]: Entering directory '/<>/Overlap' make[4]: Entering directory '/<>/Overlap' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c Overlap '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Overlap' make[3]: Leaving directory '/<>/Overlap' Making install in PairedDBG make[3]: Entering directory '/<>/PairedDBG' make[4]: Entering directory '/<>/PairedDBG' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-paired-dbg '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/PairedDBG' make[3]: Leaving directory '/<>/PairedDBG' Making install in ParseAligns make[3]: Entering directory '/<>/ParseAligns' make[4]: Entering directory '/<>/ParseAligns' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-fixmate abyss-fixmate-ssq ParseAligns '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/ParseAligns' make[3]: Leaving directory '/<>/ParseAligns' Making install in PathOverlap make[3]: Entering directory '/<>/PathOverlap' make[4]: Entering directory '/<>/PathOverlap' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c PathOverlap '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/PathOverlap' make[3]: Leaving directory '/<>/PathOverlap' Making install in PopBubbles make[3]: Entering directory '/<>/PopBubbles' make[4]: Entering directory '/<>/PopBubbles' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c PopBubbles '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/PopBubbles' make[3]: Leaving directory '/<>/PopBubbles' Making install in Scaffold make[3]: Entering directory '/<>/Scaffold' make[4]: Entering directory '/<>/Scaffold' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-scaffold abyss-junction abyss-longseqdist '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Scaffold' make[3]: Leaving directory '/<>/Scaffold' Making install in SimpleGraph make[3]: Entering directory '/<>/SimpleGraph' make[4]: Entering directory '/<>/SimpleGraph' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c SimpleGraph '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/SimpleGraph' make[3]: Leaving directory '/<>/SimpleGraph' Making install in kmerprint make[3]: Entering directory '/<>/kmerprint' make[4]: Entering directory '/<>/kmerprint' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/kmerprint' make[3]: Leaving directory '/<>/kmerprint' Making install in FilterGraph make[3]: Entering directory '/<>/FilterGraph' make[4]: Entering directory '/<>/FilterGraph' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-filtergraph '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/FilterGraph' make[3]: Leaving directory '/<>/FilterGraph' Making install in GapFiller make[3]: Entering directory '/<>/GapFiller' make[4]: Entering directory '/<>/GapFiller' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-gapfill '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/GapFiller' make[3]: Leaving directory '/<>/GapFiller' Making install in Sealer make[3]: Entering directory '/<>/Sealer' make[4]: Entering directory '/<>/Sealer' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-sealer '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Sealer' make[3]: Leaving directory '/<>/Sealer' Making install in AdjList make[3]: Entering directory '/<>/AdjList' make[4]: Entering directory '/<>/AdjList' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c AdjList '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/AdjList' make[3]: Leaving directory '/<>/AdjList' Making install in vendor make[3]: Entering directory '/<>/vendor' make[4]: Entering directory '/<>/vendor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/vendor' make[3]: Leaving directory '/<>/vendor' Making install in vendor/nthash make[3]: Entering directory '/<>/vendor/nthash' make[4]: Entering directory '/<>/vendor/nthash' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/abyss' /usr/bin/install -c -m 644 README.md '/<>/debian/tmp/usr/share/doc/abyss' make[4]: Leaving directory '/<>/vendor/nthash' make[3]: Leaving directory '/<>/vendor/nthash' Making install in vendor/gtest-1.7.0 make[3]: Entering directory '/<>/vendor/gtest-1.7.0' make[4]: Entering directory '/<>/vendor/gtest-1.7.0' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/vendor/gtest-1.7.0' make[3]: Leaving directory '/<>/vendor/gtest-1.7.0' Making install in Unittest make[3]: Entering directory '/<>/Unittest' make[4]: Entering directory '/<>/Unittest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/Unittest' make[3]: Leaving directory '/<>/Unittest' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/abyss' /usr/bin/install -c -m 644 ChangeLog CITATION.bib CITATION.md COPYRIGHT LICENSE README.md '/<>/debian/tmp/usr/share/doc/abyss' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' PATH=debian/tmp/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games help2man --no-info \ -n "Estimate distances between contigs using paired-end alignments." \ DistanceEst > debian/tmp/usr/share/man/man1/DistanceEst.1 PATH=debian/tmp/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games help2man --no-info \ -n "Fill the paired-end fields of SAM alignments" abyss-fixmate \ > debian/tmp/usr/share/man/man1/abyss-fixmate.1 make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-fac contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/AdjList contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-fixmate-ssq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/DistanceEst-ssq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-align contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/KAligner contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-todot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/PathOverlap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-sealer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-mergepairs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-tofastq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/DistanceEst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/MergeContigs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-db-csv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/Overlap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/PopBubbles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/Consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-filtergraph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/bin/DistanceEst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/PathConsensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-fixmate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/DAssembler contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/MergePaths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-map-ssq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/ABYSS-P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/bin/abyss-fixmate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-gapfill contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-index contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-bloom-dbg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/logcounter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-gc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-bloom contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-paired-dbg-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/SimpleGraph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-layout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-map contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/ABYSS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/konnector contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-scaffold contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-junction contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-paired-dbg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-overlap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/abyss-longseqdist contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/abyss/usr/lib/abyss/ParseAligns contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing abyss (in debian/abyss); do_strip: , oemstrip: pkgstriptranslations: processing abyss-dbgsym (in debian/.debhelper/abyss/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/abyss/DEBIAN/control, package abyss, directory debian/abyss pkgstripfiles: Truncating usr/share/doc/abyss/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package abyss ... pkgstripfiles: No PNG files. dpkg-deb: building package 'abyss' in '../abyss_2.2.4-1_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/abyss/dbgsym-root/DEBIAN/control, package abyss-dbgsym, directory debian/.debhelper/abyss/dbgsym-root dpkg-deb: building package 'abyss-dbgsym' in 'debian/.debhelper/scratch-space/build-abyss/abyss-dbgsym_2.2.4-1_armhf.deb'. Renaming abyss-dbgsym_2.2.4-1_armhf.deb to abyss-dbgsym_2.2.4-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../abyss_2.2.4-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200211-2333 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ abyss_2.2.4-1_armhf.changes: ---------------------------- Format: 1.8 Date: Tue, 11 Feb 2020 15:39:45 +0100 Source: abyss Binary: abyss Architecture: armhf Version: 2.2.4-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: abyss - de novo, parallel, sequence assembler for short reads Changes: abyss (2.2.4-1) unstable; urgency=medium . * New upstream version * spelling patch incorporated upstream, removed it * Remove markdown from the nodoc build profile, to allow for cross-building Checksums-Sha1: e6a909f794f182a38590db3066ec2e205aba63da 26459796 abyss-dbgsym_2.2.4-1_armhf.ddeb b1c17c0afb007f2caf891f42ed3639dd0812aff6 7601 abyss_2.2.4-1_armhf.buildinfo 24f8082b1639d7a93b5188413d7bf4f46d7564e0 2871024 abyss_2.2.4-1_armhf.deb Checksums-Sha256: 71b45141afca3c6c22bf73b320e3009727765980dd3ef1ea8574ec86f7559597 26459796 abyss-dbgsym_2.2.4-1_armhf.ddeb 2f1e82e582392110e8e4706a9868a83ab47c7cf5517863c575dae98e02456952 7601 abyss_2.2.4-1_armhf.buildinfo 558154b8ed154ba6a87845c1d3f2c81815a4d32692938b3c452181828f584667 2871024 abyss_2.2.4-1_armhf.deb Files: 92d52160a8d16d3920b1166ab9594961 26459796 debug optional abyss-dbgsym_2.2.4-1_armhf.ddeb aa2b53b13e7fb02a054598a98878afbf 7601 science optional abyss_2.2.4-1_armhf.buildinfo a67e4c7a7f354ddc047ea9ca071983c1 2871024 science optional abyss_2.2.4-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ abyss_2.2.4-1_armhf.deb ----------------------- new debian package, version 2.0. size 2871024 bytes: control archive=2700 bytes. 784 bytes, 15 lines control 4840 bytes, 77 lines md5sums Package: abyss Version: 2.2.4-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6805 Depends: make, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libopenmpi3 (>= 4.0.2), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 9), perl:any, bsdmainutils, openmpi-common, openmpi-bin Section: science Priority: optional Homepage: https://github.com/bcgsc/abyss Description: de novo, parallel, sequence assembler for short reads ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread. drwxr-xr-x root/root 0 2020-02-11 14:39 ./ drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/ drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/bin/ -rwxr-xr-x root/root 100012 2020-02-11 14:39 ./usr/bin/DistanceEst -rwxr-xr-x root/root 91796 2020-02-11 14:39 ./usr/bin/abyss-fixmate -rwxr-xr-x root/root 22460 2020-02-11 14:39 ./usr/bin/abyss-pe drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/lib/abyss/ -rwxr-xr-x root/root 181956 2020-02-11 14:39 ./usr/lib/abyss/ABYSS -rwxr-xr-x root/root 210628 2020-02-11 14:39 ./usr/lib/abyss/ABYSS-P -rwxr-xr-x root/root 120484 2020-02-11 14:39 ./usr/lib/abyss/AdjList -rwxr-xr-x root/root 46752 2020-02-11 14:39 ./usr/lib/abyss/Consensus -rwxr-xr-x root/root 63152 2020-02-11 14:39 ./usr/lib/abyss/DAssembler -rwxr-xr-x root/root 100012 2020-02-11 14:39 ./usr/lib/abyss/DistanceEst -rwxr-xr-x root/root 100012 2020-02-11 14:39 ./usr/lib/abyss/DistanceEst-ssq -rwxr-xr-x root/root 132780 2020-02-11 14:39 ./usr/lib/abyss/KAligner -rwxr-xr-x root/root 153268 2020-02-11 14:39 ./usr/lib/abyss/MergeContigs -rwxr-xr-x root/root 128672 2020-02-11 14:39 ./usr/lib/abyss/MergePaths -rwxr-xr-x root/root 132784 2020-02-11 14:39 ./usr/lib/abyss/Overlap -rwxr-xr-x root/root 63120 2020-02-11 14:39 ./usr/lib/abyss/ParseAligns -rwxr-xr-x root/root 247472 2020-02-11 14:39 ./usr/lib/abyss/PathConsensus -rwxr-xr-x root/root 124560 2020-02-11 14:39 ./usr/lib/abyss/PathOverlap -rwxr-xr-x root/root 132784 2020-02-11 14:39 ./usr/lib/abyss/PopBubbles -rwxr-xr-x root/root 124588 2020-02-11 14:39 ./usr/lib/abyss/SimpleGraph -rwxr-xr-x root/root 132768 2020-02-11 14:39 ./usr/lib/abyss/abyss-align -rwxr-xr-x root/root 218840 2020-02-11 14:39 ./usr/lib/abyss/abyss-bloom -rwxr-xr-x root/root 239292 2020-02-11 14:39 ./usr/lib/abyss/abyss-bloom-dbg -rwxr-xr-x root/root 6491 2020-02-11 14:39 ./usr/lib/abyss/abyss-bloom-dist.mk -rwxr-xr-x root/root 1135 2020-02-11 14:39 ./usr/lib/abyss/abyss-bowtie -rwxr-xr-x root/root 1192 2020-02-11 14:39 ./usr/lib/abyss/abyss-bowtie2 -rwxr-xr-x root/root 1208 2020-02-11 14:39 ./usr/lib/abyss/abyss-bwa -rwxr-xr-x root/root 1454 2020-02-11 14:39 ./usr/lib/abyss/abyss-bwamem -rwxr-xr-x root/root 1362 2020-02-11 14:39 ./usr/lib/abyss/abyss-bwasw -rwxr-xr-x root/root 42584 2020-02-11 14:39 ./usr/lib/abyss/abyss-db-csv -rwxr-xr-x root/root 703 2020-02-11 14:39 ./usr/lib/abyss/abyss-db-txt -rwxr-xr-x root/root 2739 2020-02-11 14:39 ./usr/lib/abyss/abyss-dida -rwxr-xr-x root/root 54952 2020-02-11 14:39 ./usr/lib/abyss/abyss-fac -rwxr-xr-x root/root 2058 2020-02-11 14:39 ./usr/lib/abyss/abyss-fatoagp -rwxr-xr-x root/root 120492 2020-02-11 14:39 ./usr/lib/abyss/abyss-filtergraph -rwxr-xr-x root/root 91796 2020-02-11 14:39 ./usr/lib/abyss/abyss-fixmate -rwxr-xr-x root/root 91796 2020-02-11 14:39 ./usr/lib/abyss/abyss-fixmate-ssq -rwxr-xr-x root/root 59056 2020-02-11 14:39 ./usr/lib/abyss/abyss-gapfill -rwxr-xr-x root/root 71312 2020-02-11 14:39 ./usr/lib/abyss/abyss-gc -rwxr-xr-x root/root 67224 2020-02-11 14:39 ./usr/lib/abyss/abyss-index -rwxr-xr-x root/root 79508 2020-02-11 14:39 ./usr/lib/abyss/abyss-junction -rwxr-xr-x root/root 39 2020-02-11 14:39 ./usr/lib/abyss/abyss-kaligner -rwxr-xr-x root/root 87704 2020-02-11 14:39 ./usr/lib/abyss/abyss-layout -rwxr-xr-x root/root 75420 2020-02-11 14:39 ./usr/lib/abyss/abyss-longseqdist -rwxr-xr-x root/root 124580 2020-02-11 14:39 ./usr/lib/abyss/abyss-map -rwxr-xr-x root/root 124580 2020-02-11 14:39 ./usr/lib/abyss/abyss-map-ssq -rwxr-xr-x root/root 50872 2020-02-11 14:39 ./usr/lib/abyss/abyss-mergepairs -rwxr-xr-x root/root 145080 2020-02-11 14:39 ./usr/lib/abyss/abyss-overlap -rwxr-xr-x root/root 190152 2020-02-11 14:39 ./usr/lib/abyss/abyss-paired-dbg -rwxr-xr-x root/root 218820 2020-02-11 14:39 ./usr/lib/abyss/abyss-paired-dbg-mpi -rwxr-xr-x root/root 22460 2020-02-11 14:39 ./usr/lib/abyss/abyss-pe -rwxr-xr-x root/root 4501 2020-02-11 14:39 ./usr/lib/abyss/abyss-samtoafg -rwxr-xr-x root/root 161448 2020-02-11 14:39 ./usr/lib/abyss/abyss-scaffold -rwxr-xr-x root/root 141028 2020-02-11 14:39 ./usr/lib/abyss/abyss-sealer -rwxr-xr-x root/root 671 2020-02-11 14:39 ./usr/lib/abyss/abyss-stack-size -rwxr-xr-x root/root 209 2020-02-11 14:39 ./usr/lib/abyss/abyss-tabtomd -rwxr-xr-x root/root 116372 2020-02-11 14:39 ./usr/lib/abyss/abyss-todot -rwxr-xr-x root/root 42660 2020-02-11 14:39 ./usr/lib/abyss/abyss-tofastq -rwxr-xr-x root/root 157416 2020-02-11 14:39 ./usr/lib/abyss/konnector -rwxr-xr-x root/root 54952 2020-02-11 14:39 ./usr/lib/abyss/logcounter drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/share/ drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/share/doc-base/ -rw-r--r-- root/root 226 2019-08-08 14:47 ./usr/share/doc-base/abyss-flowcharts drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/share/doc/abyss/ -rw-r--r-- root/root 556 2020-02-11 14:39 ./usr/share/doc/abyss/CITATION.bib -rw-r--r-- root/root 1861 2020-02-11 14:39 ./usr/share/doc/abyss/CITATION.md -rw-r--r-- root/root 31249 2020-02-11 14:39 ./usr/share/doc/abyss/README.html -rw-r--r-- root/root 9171 2020-02-11 14:39 ./usr/share/doc/abyss/README.md.gz -rw-r--r-- root/root 182 2019-08-08 14:47 ./usr/share/doc/abyss/README.test -rw-r--r-- root/root 1283 2020-02-11 14:39 ./usr/share/doc/abyss/changelog.Debian.gz -rw-r--r-- root/root 7012 2020-01-30 19:54 ./usr/share/doc/abyss/copyright -rw-r--r-- root/root 66778 2020-02-11 14:39 ./usr/share/doc/abyss/flowchart.pdf.gz -rw-r--r-- root/root 22664 2020-02-11 14:39 ./usr/share/doc/abyss/flowchart_simplified.pdf.gz -rw-r--r-- root/root 672 2019-08-08 14:47 ./usr/share/doc/abyss/run-unit-test drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/share/doc/abyss/test-data/ -rw-r--r-- root/root 743013 2019-08-08 14:47 ./usr/share/doc/abyss/test-data/reads1.fastq.gz -rw-r--r-- root/root 743377 2019-08-08 14:47 ./usr/share/doc/abyss/test-data/reads2.fastq.gz drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-11 14:39 ./usr/share/man/man1/ -rw-r--r-- root/root 1200 2020-02-11 14:39 ./usr/share/man/man1/ABYSS.1.gz -rw-r--r-- root/root 1026 2020-02-11 14:39 ./usr/share/man/man1/DistanceEst.1.gz -rw-r--r-- root/root 796 2020-02-11 14:39 ./usr/share/man/man1/abyss-fixmate.1.gz -rw-r--r-- root/root 3562 2020-02-11 14:39 ./usr/share/man/man1/abyss-pe.1.gz -rw-r--r-- root/root 408 2020-02-11 14:39 ./usr/share/man/man1/abyss-tofastq.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 668980 Build-Time: 1038 Distribution: focal-proposed Host Architecture: armhf Install-Time: 63 Job: abyss_2.2.4-1.dsc Machine Architecture: arm64 Package: abyss Package-Time: 1104 Source-Version: 2.2.4-1 Space: 668980 Status: successful Version: 2.2.4-1 -------------------------------------------------------------------------------- Finished at 20200211-2333 Build needed 00:18:24, 668980k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18695081 Scanning for processes to kill in build PACKAGEBUILD-18695081