Ubuntu
abpoa package

abpoa 1.4.1-3 source package in Ubuntu

Changelog

abpoa (1.4.1-3) unstable; urgency=medium

  * d/t/run-unit-test: do not run if a simd specific file is missing.
  * d/t/run-unit-test: compare deterministic results to reference data.
  * d/rules: move preprocessor flags definition to CPPFLAGS.
  * d/rules: SIMDe: enable native aliases in CPPFLAGS. (Closes: #1016207)

 -- Étienne Mollier <email address hidden>  Wed, 03 Aug 2022 13:15:25 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Downloads

File Size SHA-256 Checksum
abpoa_1.4.1-3.dsc 2.2 KiB c7a9117d4d95743bfccba9ff68ee69202281737e8d30d9b2ddc631118e385d32
abpoa_1.4.1.orig.tar.gz 191.0 KiB b16b58e260026dd7daa75cea46c75e7c418cc1b1c681dd864d37d925157dd677
abpoa_1.4.1-3.debian.tar.xz 8.3 KiB 0d7fbd6fcc4049b0af648013f8d791c4d5f8345ffe9b4f7d50b6a942b53171c5

Available diffs

No changes file available.

Binary packages built by this source

abpoa: adaptive banded Partial Order Alignment

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 For more information please refer to the paper[1] published in Bioinformatics.
 .
 [1]: https://dx.doi.org/10.1093/bioinformatics/btaa963

abpoa-dbgsym: No summary available for abpoa-dbgsym in ubuntu kinetic.

No description available for abpoa-dbgsym in ubuntu kinetic.

python3-pyabpoa: adaptive banded Partial Order Alignment - python3 module

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 This package provides the python3 module of abPOA.

python3-pyabpoa-dbgsym: No summary available for python3-pyabpoa-dbgsym in ubuntu kinetic.

No description available for python3-pyabpoa-dbgsym in ubuntu kinetic.