Ubuntu
abacas package

abacas 1.3.1-9 source package in Ubuntu

Changelog

abacas (1.3.1-9) unstable; urgency=medium

  * Move abacas-examples binary to suggests
  * Install autopkgtest script in examples

 -- Nilesh Patra <email address hidden>  Thu, 03 Sep 2020 15:56:41 +0530

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
science
Urgency:
Medium Urgency

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Builds

Hirsute: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
abacas_1.3.1-9.dsc 2.0 KiB f0878075c8100171c49b1d14176e762446058a4a41979681fe865da111e1515d
abacas_1.3.1.orig.tar.gz 21.8 KiB 0404461e441506437cd2da01a9eacc147705091c0719da47cc298eb13e362509
abacas_1.3.1-9.debian.tar.xz 2.0 MiB 238ac5ff556eabb2a4102d93522b855666fd8ea3bd0af355c94f7322f1456f8c

Available diffs

No changes file available.

Binary packages built by this source

abacas: close gaps in genomic alignments from short reads

 ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences)
 intends to rapidly contiguate (align, order, orientate), visualize and
 design primers to close gaps on shotgun assembled contigs based on a
 reference sequence.
 .
 ABACAS uses MUMmer to find alignment positions and identify syntenies
 of assembled contigs against the reference. The output is then processed
 to generate a pseudomolecule taking overlapping contigs and gaps in to
 account. ABACAS generates a comparison file that can be used to
 visualize ordered and oriented contigs in ACT. Synteny is represented by
 red bars where colour intensity decreases with lower values of percent
 identity between comparable blocks. Information on contigs such as the
 orientation, percent identity, coverage and overlap with other contigs
 can also be visualized by loading the outputted feature file on ACT.

abacas-examples: sample data for abacas to close gaps in genomic alignments

 ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences)
 intends to rapidly contiguate (align, order, orientate), visualize and
 design primers to close gaps on shotgun assembled contigs based on a
 reference sequence.
 .
 This package contains a test data set as well as sample scripts
 running some test suite provided by Debian also as autopkgtest.