RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-013 3.13.0-62-generic #102-Ubuntu SMP Tue Aug 11 14:42:17 UTC 2015 ppc64le Buildd toolchain package versions: launchpad-buildd_133 python-lpbuildd_133 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.4 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 3 Sep 00:57:47 ntpdate[1618]: adjust time server 10.211.37.1 offset 0.000794 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-7861175', '/home/buildd/filecache-default/2387c8e04212eb06cac6188888dcd8c11dca9fd7'] Unpacking chroot for build PACKAGEBUILD-7861175 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-7861175'] Mounting chroot for build PACKAGEBUILD-7861175 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-7861175', 'deb http://ftpmaster.internal/ubuntu wily main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-7861175 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-7861175', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-7861175 Ign http://ftpmaster.internal wily InRelease Ign http://archive-team.internal wily InRelease Ign http://ftpmaster.internal wily-security InRelease Ign http://archive-team.internal wily Release.gpg Ign http://ftpmaster.internal wily-updates InRelease Hit http://archive-team.internal wily Release Get:1 http://ftpmaster.internal wily Release.gpg [933 B] Ign http://archive-team.internal wily/main ppc64el Packages/DiffIndex Get:2 http://ftpmaster.internal wily-security Release.gpg [933 B] Get:3 http://ftpmaster.internal wily-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal wily Release [217 kB] Ign http://archive-team.internal wily/main Translation-en Get:5 http://ftpmaster.internal wily-security Release [63.5 kB] Hit http://archive-team.internal wily/main ppc64el Packages Get:6 http://ftpmaster.internal wily-updates Release [63.5 kB] Get:7 http://ftpmaster.internal wily/main ppc64el Packages [1393 kB] Get:8 http://ftpmaster.internal wily/restricted ppc64el Packages [28 B] Get:9 http://ftpmaster.internal wily/universe ppc64el Packages [6461 kB] Get:10 http://ftpmaster.internal wily/multiverse ppc64el Packages [115 kB] Get:11 http://ftpmaster.internal wily/main Translation-en [845 kB] Get:12 http://ftpmaster.internal wily/multiverse Translation-en [107 kB] Get:13 http://ftpmaster.internal wily/restricted Translation-en [4531 B] Get:14 http://ftpmaster.internal wily/universe Translation-en [4559 kB] Get:15 http://ftpmaster.internal wily-security/main ppc64el Packages [28 B] Get:16 http://ftpmaster.internal wily-security/restricted ppc64el Packages [28 B] Get:17 http://ftpmaster.internal wily-security/universe ppc64el Packages [28 B] Get:18 http://ftpmaster.internal wily-security/multiverse ppc64el Packages [28 B] Get:19 http://ftpmaster.internal wily-security/main Translation-en [28 B] Get:20 http://ftpmaster.internal wily-security/multiverse Translation-en [28 B] Get:21 http://ftpmaster.internal wily-security/restricted Translation-en [28 B] Get:22 http://ftpmaster.internal wily-security/universe Translation-en [28 B] Get:23 http://ftpmaster.internal wily-updates/main ppc64el Packages [28 B] Get:24 http://ftpmaster.internal wily-updates/restricted ppc64el Packages [28 B] Get:25 http://ftpmaster.internal wily-updates/universe ppc64el Packages [28 B] Get:26 http://ftpmaster.internal wily-updates/multiverse ppc64el Packages [28 B] Get:27 http://ftpmaster.internal wily-updates/main Translation-en [28 B] Get:28 http://ftpmaster.internal wily-updates/multiverse Translation-en [28 B] Get:29 http://ftpmaster.internal wily-updates/restricted Translation-en [28 B] Get:30 http://ftpmaster.internal wily-updates/universe Translation-en [28 B] Fetched 13.8 MB in 14s (933 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libtimedate-perl Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: libapt-pkg4.16 The following packages will be upgraded: apt apt-transport-https bash cpp-5 debconf dpkg dpkg-dev g++-5 gcc-5 gcc-5-base libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libcc1-0 libcryptsetup4 libdbus-1-3 libdpkg-perl libgcc-5-dev libgcc1 libgnutls-deb0-28 libgomp1 libitm1 libkmod2 libpcre3 libstdc++-5-dev libstdc++6 libsystemd0 libubsan0 libudev1 systemd systemd-sysv udev 34 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 88.4 MB of archives. After this operation, 1558 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main bash ppc64el 4.3-13ubuntu1 [615 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main dpkg ppc64el 1.18.2ubuntu3 [2097 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libgomp1 ppc64el 5.2.1-15ubuntu5 [50.5 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libitm1 ppc64el 5.2.1-15ubuntu5 [27.4 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main libatomic1 ppc64el 5.2.1-15ubuntu5 [8200 B] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libasan2 ppc64el 5.2.1-15ubuntu5 [237 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main gcc-5-base ppc64el 5.2.1-15ubuntu5 [17.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libgcc1 ppc64el 1:5.2.1-15ubuntu5 [27.6 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libubsan0 ppc64el 5.2.1-15ubuntu5 [96.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main cpp-5 ppc64el 5.2.1-15ubuntu5 [24.3 MB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libcc1-0 ppc64el 5.2.1-15ubuntu5 [31.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main g++-5 ppc64el 5.2.1-15ubuntu5 [26.0 MB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main gcc-5 ppc64el 5.2.1-15ubuntu5 [24.5 MB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libgcc-5-dev ppc64el 5.2.1-15ubuntu5 [578 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libstdc++-5-dev ppc64el 5.2.1-15ubuntu5 [1344 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libstdc++6 ppc64el 5.2.1-15ubuntu5 [409 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libapt-pkg4.16 ppc64el 1.0.9.10ubuntu6 [613 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main apt ppc64el 1.0.9.10ubuntu6 [969 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main debconf all 1.5.57ubuntu1 [136 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main libpcre3 ppc64el 2:8.35-7ubuntu5 [217 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libsystemd0 ppc64el 225-1ubuntu1 [197 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main systemd ppc64el 225-1ubuntu1 [3296 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libudev1 ppc64el 225-1ubuntu1 [57.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main udev ppc64el 225-1ubuntu1 [965 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libkmod2 ppc64el 21-1ubuntu1 [36.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main libapparmor1 ppc64el 2.10-0ubuntu4 [29.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libaudit-common all 1:2.4.2-1ubuntu1 [4080 B] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libaudit1 ppc64el 1:2.4.2-1ubuntu1 [37.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main libcryptsetup4 ppc64el 2:1.6.6-5ubuntu2 [70.8 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main systemd-sysv ppc64el 225-1ubuntu1 [16.4 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main libgnutls-deb0-28 ppc64el 3.3.15-5ubuntu2 [442 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main apt-transport-https ppc64el 1.0.9.10ubuntu6 [24.7 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main libdbus-1-3 ppc64el 1.10.0-1ubuntu1 [155 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main dpkg-dev all 1.18.2ubuntu3 [583 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main libdpkg-perl all 1.18.2ubuntu3 [194 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.4 MB in 1min 3s (1395 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11598 files and directories currently installed.) Preparing to unpack .../bash_4.3-13ubuntu1_ppc64el.deb ... Unpacking bash (4.3-13ubuntu1) over (4.3-11ubuntu3) ... Setting up bash (4.3-13ubuntu1) ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11630 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.4.2-1ubuntu1_ppc64el.deb ... Unpacking libaudit1:ppc64el (1:2.4.2-1ubuntu1) over (1:2.3.7-1ubuntu3) ... Setting up libaudit1:ppc64el (1:2.4.2-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... 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Unpacking libdbus-1-3:ppc64el (1.10.0-1ubuntu1) over (1.8.12-1ubuntu5) ... Preparing to unpack .../dpkg-dev_1.18.2ubuntu3_all.deb ... Unpacking dpkg-dev (1.18.2ubuntu3) over (1.18.1ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.2ubuntu3_all.deb ... Unpacking libdpkg-perl (1.18.2ubuntu3) over (1.18.1ubuntu1) ... Setting up libgomp1:ppc64el (5.2.1-15ubuntu5) ... Setting up libitm1:ppc64el (5.2.1-15ubuntu5) ... Setting up libatomic1:ppc64el (5.2.1-15ubuntu5) ... Setting up libasan2:ppc64el (5.2.1-15ubuntu5) ... Setting up libubsan0:ppc64el (5.2.1-15ubuntu5) ... Setting up cpp-5 (5.2.1-15ubuntu5) ... Setting up libcc1-0:ppc64el (5.2.1-15ubuntu5) ... Setting up libgcc-5-dev:ppc64el (5.2.1-15ubuntu5) ... Setting up gcc-5 (5.2.1-15ubuntu5) ... Setting up libstdc++-5-dev:ppc64el (5.2.1-15ubuntu5) ... Setting up g++-5 (5.2.1-15ubuntu5) ... Setting up libgnutls-deb0-28:ppc64el (3.3.15-5ubuntu2) ... Setting up apt-transport-https (1.0.9.10ubuntu6) ... Setting up libdbus-1-3:ppc64el (1.10.0-1ubuntu1) ... Setting up libdpkg-perl (1.18.2ubuntu3) ... Setting up dpkg-dev (1.18.2ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-7861175', 'ppc64el', 'wily', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=wily', '--purge=never', '--nolog', '-A', 'htslib_1.2.1-1.dsc'] Initiating build PACKAGEBUILD-7861175 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-62-generic #102-Ubuntu SMP Tue Aug 11 14:42:17 UTC 2015 ppc64le sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-ppc64el-013.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ htslib 1.2.1-1 (ppc64el) 03 Sep 2015 00:59 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: htslib Version: 1.2.1-1 Source Version: 1.2.1-1 Distribution: wily Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/htslib-rEPjPl/htslib-1.2.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/htslib-rEPjPl' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-7861175/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── htslib_1.2.1-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-jg7Bcv/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libtimedate-perl Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11628 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), dh-exec, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), dh-exec, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-htslib-dummy' in '/«BUILDDIR»/resolver-mIcqK6/apt_archive/sbuild-build-depends-htslib-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install htslib build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libtimedate-perl Use 'apt-get autoremove' to remove it. The following extra packages will be installed: bsdmainutils debhelper dh-exec file gettext gettext-base groff-base intltool-debian libasprintf0v5 libcroco3 libglib2.0-0 libicu55 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-exec file gettext gettext-base groff-base intltool-debian libasprintf0v5 libcroco3 libglib2.0-0 libicu55 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-htslib-dummy zlib1g-dev 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 14.5 MB/14.5 MB of archives. After this operation, 59.9 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-htslib-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0v5 ppc64el 0.19.4-1ubuntu3 [6832 B] Get:2 http://ftpmaster.internal/ubuntu/ wily/main groff-base ppc64el 1.22.3-1 [1396 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils ppc64el 9.0.6ubuntu1 [175 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 ppc64el 1.4.1-1 [24.0 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main man-db ppc64el 2.7.2-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 ppc64el 2.45.6-1 [1032 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libicu55 ppc64el 55.1-4 [7760 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libxml2 ppc64el 2.9.2+dfsg1-3ubuntu1 [606 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 ppc64el 0.6.8-3 [77.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 ppc64el 0.9.3-5.2ubuntu1 [269 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 ppc64el 1:5.22+15-2ubuntu1 [215 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main file ppc64el 1:5.22+15-2ubuntu1 [21.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main gettext-base ppc64el 0.19.4-1ubuntu3 [47.2 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main gettext ppc64el 0.19.4-1ubuntu3 [874 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150811ubuntu1 [731 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main zlib1g-dev ppc64el 1:1.2.8.dfsg-2ubuntu1 [169 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main dh-exec ppc64el 0.14 [22.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.5 MB in 8s (1738 kB/s) Selecting previously unselected package libasprintf0v5:ppc64el. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11628 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_ppc64el.deb ... Unpacking libasprintf0v5:ppc64el (0.19.4-1ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_ppc64el.deb ... Unpacking groff-base (1.22.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.4.1-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.2-1_ppc64el.deb ... Unpacking man-db (2.7.2-1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.45.6-1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.45.6-1) ... Selecting previously unselected package libicu55:ppc64el. Preparing to unpack .../libicu55_55.1-4_ppc64el.deb ... Unpacking libicu55:ppc64el (55.1-4) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../libxml2_2.9.2+dfsg1-3ubuntu1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.2+dfsg1-3ubuntu1) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../libcroco3_0.6.8-3_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.8-3) ... Selecting previously unselected package libunistring0:ppc64el. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_ppc64el.deb ... Unpacking libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.22+15-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.22+15-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2ubuntu1_ppc64el.deb ... Unpacking file (1:5.22+15-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.4-1ubuntu3_ppc64el.deb ... Unpacking gettext-base (0.19.4-1ubuntu3) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.4-1ubuntu3_ppc64el.deb ... Unpacking gettext (0.19.4-1ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ... Unpacking intltool-debian (0.35.0+20060710.2) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20150811ubuntu1_all.deb ... Unpacking debhelper (9.20150811ubuntu1) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu1_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu1) ... Selecting previously unselected package dh-exec. Preparing to unpack .../dh-exec_0.14_ppc64el.deb ... Unpacking dh-exec (0.14) ... Selecting previously unselected package sbuild-build-depends-htslib-dummy. Preparing to unpack .../sbuild-build-depends-htslib-dummy.deb ... Unpacking sbuild-build-depends-htslib-dummy (0.invalid.0) ... Setting up libasprintf0v5:ppc64el (0.19.4-1ubuntu3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:ppc64el (1.4.1-1) ... Setting up man-db (2.7.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libglib2.0-0:ppc64el (2.45.6-1) ... No schema files found: doing nothing. Setting up libicu55:ppc64el (55.1-4) ... Setting up libxml2:ppc64el (2.9.2+dfsg1-3ubuntu1) ... Setting up libcroco3:ppc64el (0.6.8-3) ... Setting up libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Setting up libmagic1:ppc64el (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150811ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu1) ... Setting up dh-exec (0.14) ... Setting up sbuild-build-depends-htslib-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-62-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.25.1-1ubuntu1 dpkg-dev_1.18.2ubuntu3 g++-5_5.2.1-15ubuntu5 gcc-5_5.2.1-15ubuntu5 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-15ubuntu5 libstdc++6_5.2.1-15ubuntu5 linux-libc-dev_4.1.0-3.3 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.9.10ubuntu6 apt-transport-https_1.0.9.10ubuntu6 base-files_7.2ubuntu10 base-passwd_3.5.38 bash_4.3-13ubuntu1 binutils_2.25.1-1ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu3 build-essential_11.6ubuntu6 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-3ubuntu1 cpp_4:5.2.1-3ubuntu1 cpp-5_5.2.1-15ubuntu5 dash_0.5.7-4ubuntu2 debconf_1.5.57ubuntu1 debhelper_9.20150811ubuntu1 debianutils_4.5.1 dh-exec_0.14 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.2ubuntu3 dpkg-dev_1.18.2ubuntu3 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 fakeroot_1.20.2-1ubuntu1 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 g++_4:5.2.1-3ubuntu1 g++-5_5.2.1-15ubuntu5 gcc_4:5.2.1-3ubuntu1 gcc-5_5.2.1-15ubuntu5 gcc-5-base_5.2.1-15ubuntu5 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4ubuntu1 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu4 libapt-pkg4.12_1.0.9.10ubuntu1 libapt-pkg4.16_1.0.9.10ubuntu6 libasan2_5.2.1-15ubuntu5 libasn1-8-heimdal_1.6~rc2+dfsg-10 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-15ubuntu5 libattr1_1:2.4.47-2 libaudit-common_1:2.4.2-1ubuntu1 libaudit1_1:2.4.2-1ubuntu1 libblkid1_2.26.2-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-9 libcap2-bin_1:2.24-9 libcc1-0_5.2.1-15ubuntu5 libcomerr2_1.42.12-1ubuntu2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.43.0-1ubuntu1 libdb5.3_5.3.28-9 libdbus-1-3_1.10.0-1ubuntu1 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.2ubuntu3 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu3 libffi6_3.2.1-3 libgcc-5-dev_5.2.1-15ubuntu5 libgcc1_1:5.2.1-15ubuntu5 libgcrypt20_1.6.3-2ubuntu1 libgdbm3_1.8.3-13.1 libglib2.0-0_2.45.6-1 libgmp10_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu2 libgomp1_5.2.1-15ubuntu5 libgpg-error0_1.19-2 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10 libhcrypto4-heimdal_1.6~rc2+dfsg-10 libheimbase1-heimdal_1.6~rc2+dfsg-10 libheimntlm0-heimdal_1.6~rc2+dfsg-10 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10 libicu55_55.1-4 libidn11_1.28-1ubuntu2 libisl13_0.14-2 libitm1_5.2.1-15ubuntu5 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 libldap-2.4-2_2.4.41+dfsg-1ubuntu1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7ubuntu5 libpipeline1_1.4.1-1 libpng12-0_1.2.51-0ubuntu3 libprocps3_1:3.3.9-1ubuntu8 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1build1 libsemanage1_2.3-1build1 libsepol1_2.3-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.26.2-6ubuntu3 libsqlite3-0_3.8.11.1-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-5-dev_5.2.1-15ubuntu5 libstdc++6_5.2.1-15ubuntu5 libsystemd0_225-1ubuntu1 libtasn1-6_4.5-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libubsan0_5.2.1-15ubuntu5 libudev1_225-1ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10 libxml2_2.9.2+dfsg1-3ubuntu1 linux-libc-dev_4.1.0-3.3 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 make_4.0-8.1 man-db_2.7.2-1 mawk_1.3.3-17ubuntu2 mount_2.26.2-6ubuntu3 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.69 pkgbinarymangler_121 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htslib-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_225-1ubuntu1 systemd-sysv_225-1ubuntu1 sysv-rc_2.88dsf-59.2ubuntu1 sysvinit-utils_2.88dsf-59.2ubuntu1 tar_1.27.1-2 tzdata_2015f-1 ubuntu-keyring_2012.05.19 udev_225-1ubuntu1 util-linux_2.26.2-6ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu1 zlib1g-dev_1:1.2.8.dfsg-2ubuntu1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Mon May 25 04:49:27 2015 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./htslib_1.2.1-1.dsc dpkg-source: info: extracting htslib in htslib-1.2.1 dpkg-source: info: unpacking htslib_1.2.1.orig.tar.gz dpkg-source: info: unpacking htslib_1.2.1-1.debian.tar.xz dpkg-source: info: applying debian-changes Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package htslib dpkg-buildpackage: source version 1.2.1-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build htslib-1.2.1 dpkg-buildpackage: host architecture ppc64el dpkg-source: info: using options from htslib-1.2.1/debian/source/options: --single-debian-patch fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel make -j4 distclean make[1]: Entering directory '/«PKGBUILDDIR»' rm -f test/*.tmp test/*.tmp.* rm -f libhts.so libhts.so.* rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f libhts.a bgzip htsfile tabix test/fieldarith test/hfile test/sam test/test-regidx test/test_view test/test-vcf-api test/test-vcf-sweep rm -f config.cache config.log config.mk config.status rm -f TAGS *-uninstalled.pc make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean -O--parallel rm -f debian/libhts1.substvars rm -f debian/libhts1.*.debhelper rm -rf debian/libhts1/ rm -f debian/libhts-dev.substvars rm -f debian/libhts-dev.*.debhelper rm -rf debian/libhts-dev/ rm -f debian/htslib-test.substvars rm -f debian/htslib-test.*.debhelper rm -rf debian/htslib-test/ rm -f debian/tabix.substvars rm -f debian/tabix.*.debhelper rm -rf debian/tabix/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --parallel dh_testdir -O--parallel dh_auto_configure -O--parallel debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ # re-try later LDLIBS=-lhts \ PACKAGE_VERSION="1.2.1-1" \ libdir=/usr/lib/powerpc64le-linux-gnu make -j4 "CFLAGS=-g -O3 -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro" make[2]: Entering directory '/«PKGBUILDDIR»' gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.2.1"' > version.h gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/cram_samtools.o cram/cram_samtools.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/files.o cram/files.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/md5.o cram/md5.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/rANS_static.o cram/rANS_static.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/sam_header.o cram/sam_header.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/thread_pool.o cram/thread_pool.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/vlen.o cram/vlen.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o cram/zfio.o cram/zfio.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o kfunc.pico kfunc.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o knetfile.pico knetfile.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o kstring.pico kstring.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o bgzf.pico bgzf.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o faidx.pico faidx.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o hfile.pico hfile.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o hfile_net.pico hfile_net.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o hts.pico hts.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o regidx.pico regidx.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o sam.pico sam.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o vcf_sweep.pico vcf_sweep.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o tbx.pico tbx.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o vcf.pico vcf.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o vcfutils.pico vcfutils.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_decode.pico cram/cram_decode.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_encode.pico cram/cram_encode.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_index.pico cram/cram_index.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_io.pico cram/cram_io.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_samtools.pico cram/cram_samtools.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_stats.pico cram/cram_stats.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/files.pico cram/files.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/mFILE.pico cram/mFILE.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/md5.pico cram/md5.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/rANS_static.pico cram/rANS_static.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/sam_header.pico cram/sam_header.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/string_alloc.pico cram/string_alloc.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/thread_pool.pico cram/thread_pool.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/vlen.pico cram/vlen.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -fpic -c -o cram/zfio.pico cram/zfio.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c gcc -shared -Wl,-soname,libhts.so.1 -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o libhts.so kfunc.pico knetfile.pico kstring.pico bgzf.pico faidx.pico hfile.pico hfile_net.pico hts.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/md5.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico cram/thread_pool.pico cram/vlen.pico cram/zfio.pico -lz -lm ln -sf libhts.so libhts.so.1 ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/md5.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o ranlib libhts.a gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o bgzip bgzip.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o htsfile htsfile.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o tabix tabix.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/fieldarith test/fieldarith.o libhts.a -lz gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/hfile test/hfile.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/sam test/sam.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/test-regidx test/test-regidx.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/test_view test/test_view.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/test-vcf-api test/test-vcf-api.o libhts.a -lz gcc -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -lz make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_test make -j4 test make[2]: Entering directory '/«PKGBUILDDIR»' test/fieldarith test/fieldarith.sam test/hfile test/sam test/ce.fa test/test-regidx cd test && REF_PATH=: ./test_view.pl === Testing auxf#values.sam, ref auxf.fa === ./test_view -S -b auxf#values.sam > auxf#values.tmp.bam ./test_view auxf#values.tmp.bam > auxf#values.tmp.bam.sam_ ./compare_sam.pl auxf#values.sam auxf#values.tmp.bam.sam_ ./test_view -t auxf.fa -S -C auxf#values.sam > auxf#values.tmp.cram ./test_view -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ ./test_view -t auxf.fa -C auxf#values.tmp.bam > auxf#values.tmp.bam.cram ./test_view -b -D auxf#values.tmp.bam.cram > auxf#values.tmp.bam.cram.bam ./test_view auxf#values.tmp.bam.cram.bam > auxf#values.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.bam.cram.bam.sam_ === Testing c1#bounds.sam, ref c1.fa === ./test_view -S -b c1#bounds.sam > c1#bounds.tmp.bam ./test_view c1#bounds.tmp.bam > c1#bounds.tmp.bam.sam_ ./compare_sam.pl c1#bounds.sam c1#bounds.tmp.bam.sam_ ./test_view -t c1.fa -S -C c1#bounds.sam > c1#bounds.tmp.cram ./test_view -D c1#bounds.tmp.cram > c1#bounds.tmp.cram.sam_ ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.cram.sam_ ./test_view -t c1.fa -C c1#bounds.tmp.bam > c1#bounds.tmp.bam.cram ./test_view -b -D c1#bounds.tmp.bam.cram > c1#bounds.tmp.bam.cram.bam ./test_view c1#bounds.tmp.bam.cram.bam > c1#bounds.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.bam.cram.bam.sam_ === Testing c1#clip.sam, ref c1.fa === ./test_view -S -b c1#clip.sam > c1#clip.tmp.bam ./test_view c1#clip.tmp.bam > c1#clip.tmp.bam.sam_ ./compare_sam.pl c1#clip.sam c1#clip.tmp.bam.sam_ ./test_view -t c1.fa -S -C c1#clip.sam > c1#clip.tmp.cram ./test_view -D c1#clip.tmp.cram > c1#clip.tmp.cram.sam_ ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.cram.sam_ ./test_view -t c1.fa -C c1#clip.tmp.bam > c1#clip.tmp.bam.cram ./test_view -b -D c1#clip.tmp.bam.cram > c1#clip.tmp.bam.cram.bam ./test_view c1#clip.tmp.bam.cram.bam > c1#clip.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.bam.cram.bam.sam_ === Testing c1#pad1.sam, ref c1.fa === ./test_view -S -b c1#pad1.sam > c1#pad1.tmp.bam ./test_view c1#pad1.tmp.bam > c1#pad1.tmp.bam.sam_ ./compare_sam.pl c1#pad1.sam c1#pad1.tmp.bam.sam_ ./test_view -t c1.fa -S -C c1#pad1.sam > c1#pad1.tmp.cram ./test_view -D c1#pad1.tmp.cram > c1#pad1.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.cram.sam_ ./test_view -t c1.fa -C c1#pad1.tmp.bam > c1#pad1.tmp.bam.cram ./test_view -b -D c1#pad1.tmp.bam.cram > c1#pad1.tmp.bam.cram.bam ./test_view c1#pad1.tmp.bam.cram.bam > c1#pad1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.bam.cram.bam.sam_ === Testing c1#pad2.sam, ref c1.fa === ./test_view -S -b c1#pad2.sam > c1#pad2.tmp.bam ./test_view c1#pad2.tmp.bam > c1#pad2.tmp.bam.sam_ ./compare_sam.pl c1#pad2.sam c1#pad2.tmp.bam.sam_ ./test_view -t c1.fa -S -C c1#pad2.sam > c1#pad2.tmp.cram ./test_view -D c1#pad2.tmp.cram > c1#pad2.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.cram.sam_ ./test_view -t c1.fa -C c1#pad2.tmp.bam > c1#pad2.tmp.bam.cram ./test_view -b -D c1#pad2.tmp.bam.cram > c1#pad2.tmp.bam.cram.bam ./test_view c1#pad2.tmp.bam.cram.bam > c1#pad2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.bam.cram.bam.sam_ === Testing c1#pad3.sam, ref c1.fa === ./test_view -S -b c1#pad3.sam > c1#pad3.tmp.bam ./test_view c1#pad3.tmp.bam > c1#pad3.tmp.bam.sam_ ./compare_sam.pl c1#pad3.sam c1#pad3.tmp.bam.sam_ ./test_view -t c1.fa -S -C c1#pad3.sam > c1#pad3.tmp.cram ./test_view -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ ./test_view -t c1.fa -C c1#pad3.tmp.bam > c1#pad3.tmp.bam.cram ./test_view -b -D c1#pad3.tmp.bam.cram > c1#pad3.tmp.bam.cram.bam ./test_view c1#pad3.tmp.bam.cram.bam > c1#pad3.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.bam.cram.bam.sam_ === Testing ce#1.sam, ref ce.fa === ./test_view -S -b ce#1.sam > ce#1.tmp.bam ./test_view ce#1.tmp.bam > ce#1.tmp.bam.sam_ ./compare_sam.pl ce#1.sam ce#1.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#1.sam > ce#1.tmp.cram ./test_view -D ce#1.tmp.cram > ce#1.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.cram.sam_ ./test_view -t ce.fa -C ce#1.tmp.bam > ce#1.tmp.bam.cram ./test_view -b -D ce#1.tmp.bam.cram > ce#1.tmp.bam.cram.bam ./test_view ce#1.tmp.bam.cram.bam > ce#1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.bam.cram.bam.sam_ === Testing ce#2.sam, ref ce.fa === ./test_view -S -b ce#2.sam > ce#2.tmp.bam ./test_view ce#2.tmp.bam > ce#2.tmp.bam.sam_ ./compare_sam.pl ce#2.sam ce#2.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#2.sam > ce#2.tmp.cram ./test_view -D ce#2.tmp.cram > ce#2.tmp.cram.sam_ ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.cram.sam_ ./test_view -t ce.fa -C ce#2.tmp.bam > ce#2.tmp.bam.cram ./test_view -b -D ce#2.tmp.bam.cram > ce#2.tmp.bam.cram.bam ./test_view ce#2.tmp.bam.cram.bam > ce#2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.bam.cram.bam.sam_ === Testing ce#5.sam, ref ce.fa === ./test_view -S -b ce#5.sam > ce#5.tmp.bam ./test_view ce#5.tmp.bam > ce#5.tmp.bam.sam_ ./compare_sam.pl ce#5.sam ce#5.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#5.sam > ce#5.tmp.cram ./test_view -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ ./test_view -t ce.fa -C ce#5.tmp.bam > ce#5.tmp.bam.cram ./test_view -b -D ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.bam ./test_view ce#5.tmp.bam.cram.bam > ce#5.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.bam.sam_ === Testing ce#5b.sam, ref ce.fa === ./test_view -S -b ce#5b.sam > ce#5b.tmp.bam ./test_view ce#5b.tmp.bam > ce#5b.tmp.bam.sam_ ./compare_sam.pl ce#5b.sam ce#5b.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#5b.sam > ce#5b.tmp.cram ./test_view -D ce#5b.tmp.cram > ce#5b.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.cram.sam_ ./test_view -t ce.fa -C ce#5b.tmp.bam > ce#5b.tmp.bam.cram ./test_view -b -D ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.bam ./test_view ce#5b.tmp.bam.cram.bam > ce#5b.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.bam.sam_ === Testing ce#large_seq.sam, ref ce.fa === ./test_view -S -b ce#large_seq.sam > ce#large_seq.tmp.bam ./test_view ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.sam_ ./compare_sam.pl ce#large_seq.sam ce#large_seq.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#large_seq.sam > ce#large_seq.tmp.cram ./test_view -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ ./test_view -t ce.fa -C ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.cram ./test_view -b -D ce#large_seq.tmp.bam.cram > ce#large_seq.tmp.bam.cram.bam ./test_view ce#large_seq.tmp.bam.cram.bam > ce#large_seq.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.bam.cram.bam.sam_ === Testing ce#tag_depadded.sam, ref ce.fa === ./test_view -S -b ce#tag_depadded.sam > ce#tag_depadded.tmp.bam ./test_view ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.sam_ ./compare_sam.pl ce#tag_depadded.sam ce#tag_depadded.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#tag_depadded.sam > ce#tag_depadded.tmp.cram ./test_view -D ce#tag_depadded.tmp.cram > ce#tag_depadded.tmp.cram.sam_ ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.cram.sam_ ./test_view -t ce.fa -C ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.cram ./test_view -b -D ce#tag_depadded.tmp.bam.cram > ce#tag_depadded.tmp.bam.cram.bam ./test_view ce#tag_depadded.tmp.bam.cram.bam > ce#tag_depadded.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.bam.cram.bam.sam_ === Testing ce#tag_padded.sam, ref ce.fa === ./test_view -S -b ce#tag_padded.sam > ce#tag_padded.tmp.bam ./test_view ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.sam_ ./compare_sam.pl ce#tag_padded.sam ce#tag_padded.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#tag_padded.sam > ce#tag_padded.tmp.cram ./test_view -D ce#tag_padded.tmp.cram > ce#tag_padded.tmp.cram.sam_ ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.cram.sam_ ./test_view -t ce.fa -C ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.cram ./test_view -b -D ce#tag_padded.tmp.bam.cram > ce#tag_padded.tmp.bam.cram.bam ./test_view ce#tag_padded.tmp.bam.cram.bam > ce#tag_padded.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.bam.cram.bam.sam_ === Testing ce#unmap.sam, ref ce.fa === ./test_view -S -b ce#unmap.sam > ce#unmap.tmp.bam ./test_view ce#unmap.tmp.bam > ce#unmap.tmp.bam.sam_ ./compare_sam.pl ce#unmap.sam ce#unmap.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#unmap.sam > ce#unmap.tmp.cram ./test_view -D ce#unmap.tmp.cram > ce#unmap.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.cram.sam_ ./test_view -t ce.fa -C ce#unmap.tmp.bam > ce#unmap.tmp.bam.cram ./test_view -b -D ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.bam ./test_view ce#unmap.tmp.bam.cram.bam > ce#unmap.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.bam.sam_ === Testing ce#unmap1.sam, ref ce.fa === ./test_view -S -b ce#unmap1.sam > ce#unmap1.tmp.bam ./test_view ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.sam_ ./compare_sam.pl ce#unmap1.sam ce#unmap1.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#unmap1.sam > ce#unmap1.tmp.cram ./test_view -D ce#unmap1.tmp.cram > ce#unmap1.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.cram.sam_ ./test_view -t ce.fa -C ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.cram ./test_view -b -D ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.bam ./test_view ce#unmap1.tmp.bam.cram.bam > ce#unmap1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.bam.sam_ === Testing ce#unmap2.sam, ref ce.fa === ./test_view -S -b ce#unmap2.sam > ce#unmap2.tmp.bam ./test_view ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.sam_ ./compare_sam.pl ce#unmap2.sam ce#unmap2.tmp.bam.sam_ ./test_view -t ce.fa -S -C ce#unmap2.sam > ce#unmap2.tmp.cram ./test_view -D ce#unmap2.tmp.cram > ce#unmap2.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.cram.sam_ ./test_view -t ce.fa -C ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.cram ./test_view -b -D ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.bam ./test_view ce#unmap2.tmp.bam.cram.bam > ce#unmap2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.bam.sam_ === Testing xx#blank.sam, ref xx.fa === ./test_view -S -b xx#blank.sam > xx#blank.tmp.bam ./test_view xx#blank.tmp.bam > xx#blank.tmp.bam.sam_ ./compare_sam.pl xx#blank.sam xx#blank.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#blank.sam > xx#blank.tmp.cram ./test_view -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ ./test_view -t xx.fa -C xx#blank.tmp.bam > xx#blank.tmp.bam.cram ./test_view -b -D xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.bam ./test_view xx#blank.tmp.bam.cram.bam > xx#blank.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.bam.sam_ === Testing xx#large_aux.sam, ref xx.fa === ./test_view -S -b xx#large_aux.sam > xx#large_aux.tmp.bam ./test_view xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.sam_ ./compare_sam.pl xx#large_aux.sam xx#large_aux.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#large_aux.sam > xx#large_aux.tmp.cram ./test_view -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -t xx.fa -C xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.cram ./test_view -b -D xx#large_aux.tmp.bam.cram > xx#large_aux.tmp.bam.cram.bam ./test_view xx#large_aux.tmp.bam.cram.bam > xx#large_aux.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.bam.cram.bam.sam_ === Testing xx#large_aux2.sam, ref xx.fa === ./test_view -S -b xx#large_aux2.sam > xx#large_aux2.tmp.bam ./test_view xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.sam_ ./compare_sam.pl xx#large_aux2.sam xx#large_aux2.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#large_aux2.sam > xx#large_aux2.tmp.cram ./test_view -D xx#large_aux2.tmp.cram > xx#large_aux2.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.cram.sam_ ./test_view -t xx.fa -C xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.cram ./test_view -b -D xx#large_aux2.tmp.bam.cram > xx#large_aux2.tmp.bam.cram.bam ./test_view xx#large_aux2.tmp.bam.cram.bam > xx#large_aux2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.bam.cram.bam.sam_ === Testing xx#minimal.sam, ref xx.fa === ./test_view -S -b xx#minimal.sam > xx#minimal.tmp.bam ./test_view xx#minimal.tmp.bam > xx#minimal.tmp.bam.sam_ ./compare_sam.pl xx#minimal.sam xx#minimal.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#minimal.sam > xx#minimal.tmp.cram ./test_view -D xx#minimal.tmp.cram > xx#minimal.tmp.cram.sam_ ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.cram.sam_ ./test_view -t xx.fa -C xx#minimal.tmp.bam > xx#minimal.tmp.bam.cram ./test_view -b -D xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.bam ./test_view xx#minimal.tmp.bam.cram.bam > xx#minimal.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.bam.sam_ === Testing xx#pair.sam, ref xx.fa === ./test_view -S -b xx#pair.sam > xx#pair.tmp.bam ./test_view xx#pair.tmp.bam > xx#pair.tmp.bam.sam_ ./compare_sam.pl xx#pair.sam xx#pair.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#pair.sam > xx#pair.tmp.cram ./test_view -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ ./test_view -t xx.fa -C xx#pair.tmp.bam > xx#pair.tmp.bam.cram ./test_view -b -D xx#pair.tmp.bam.cram > xx#pair.tmp.bam.cram.bam ./test_view xx#pair.tmp.bam.cram.bam > xx#pair.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.bam.cram.bam.sam_ === Testing xx#rg.sam, ref xx.fa === ./test_view -S -b xx#rg.sam > xx#rg.tmp.bam ./test_view xx#rg.tmp.bam > xx#rg.tmp.bam.sam_ ./compare_sam.pl xx#rg.sam xx#rg.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#rg.sam > xx#rg.tmp.cram ./test_view -D xx#rg.tmp.cram > xx#rg.tmp.cram.sam_ ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.cram.sam_ ./test_view -t xx.fa -C xx#rg.tmp.bam > xx#rg.tmp.bam.cram ./test_view -b -D xx#rg.tmp.bam.cram > xx#rg.tmp.bam.cram.bam ./test_view xx#rg.tmp.bam.cram.bam > xx#rg.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.bam.cram.bam.sam_ === Testing xx#triplet.sam, ref xx.fa === ./test_view -S -b xx#triplet.sam > xx#triplet.tmp.bam ./test_view xx#triplet.tmp.bam > xx#triplet.tmp.bam.sam_ ./compare_sam.pl xx#triplet.sam xx#triplet.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#triplet.sam > xx#triplet.tmp.cram ./test_view -D xx#triplet.tmp.cram > xx#triplet.tmp.cram.sam_ ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.cram.sam_ ./test_view -t xx.fa -C xx#triplet.tmp.bam > xx#triplet.tmp.bam.cram ./test_view -b -D xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.bam ./test_view xx#triplet.tmp.bam.cram.bam > xx#triplet.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.bam.sam_ === Testing xx#unsorted.sam, ref xx.fa === ./test_view -S -b xx#unsorted.sam > xx#unsorted.tmp.bam ./test_view xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.sam_ ./compare_sam.pl xx#unsorted.sam xx#unsorted.tmp.bam.sam_ ./test_view -t xx.fa -S -C xx#unsorted.sam > xx#unsorted.tmp.cram ./test_view -D xx#unsorted.tmp.cram > xx#unsorted.tmp.cram.sam_ ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.cram.sam_ ./test_view -t xx.fa -C xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.cram ./test_view -b -D xx#unsorted.tmp.bam.cram > xx#unsorted.tmp.bam.cram.bam ./test_view xx#unsorted.tmp.bam.cram.bam > xx#unsorted.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.bam.cram.bam.sam_ Successes 240 Failures 0 cd test && ./test.pl test_vcf_api: /«PKGBUILDDIR»/test/test-vcf-api /tmp/bAelD4xjAJ/test-vcf-api.bcf .. ok test_vcf_sweep: /«PKGBUILDDIR»/test/test-vcf-sweep /tmp/bAelD4xjAJ/test-vcf-api.bcf .. ok Number of tests: total .. 2 passed .. 2 failed .. 0 make[2]: Leaving directory '/«PKGBUILDDIR»' rm -f test/*.tmp test/*.tmp.* test/*.o test/*.dSYM \ test/fieldarith test/hfile test/test_view test/test-vcf-api test/test-vcf-sweep fakeroot debian/rules binary make[1]: Leaving directory '/«PKGBUILDDIR»' dh binary --parallel dh_testroot -O--parallel dh_prep -O--parallel rm -f debian/libhts1.substvars rm -f debian/libhts1.*.debhelper rm -rf debian/libhts1/ rm -f debian/libhts-dev.substvars rm -f debian/libhts-dev.*.debhelper rm -rf debian/libhts-dev/ rm -f debian/htslib-test.substvars rm -f debian/htslib-test.*.debhelper rm -rf debian/htslib-test/ rm -f debian/tabix.substvars rm -f debian/tabix.*.debhelper rm -rf debian/tabix/ debian/rules override_dh_auto_install make[1]: Entering directory '/«PKGBUILDDIR»' rm /«PKGBUILDDIR»/test/sam /«PKGBUILDDIR»/test/test-regidx dh_auto_install -- \ prefix=/usr \ libdir=/usr/lib/powerpc64le-linux-gnu \ PACKAGE_VERSION="1.2.1-1" install -d debian/libhts1 install -d debian/libhts-dev install -d debian/htslib-test install -d debian/tabix make -j4 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr libdir=/usr/lib/powerpc64le-linux-gnu PACKAGE_VERSION=1.2.1-1 make[2]: Entering directory '/«PKGBUILDDIR»' mkdir -p -m 755 /«PKGBUILDDIR»/debian/tmp/usr/bin /«PKGBUILDDIR»/debian/tmp/usr/include /«PKGBUILDDIR»/debian/tmp/usr/include/htslib /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5 /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig install -p -m 644 libhts.so /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.so.1.2.1-1 sed -e 's#@includedir@#/usr/include#g;s#@libdir@#/usr/lib/powerpc64le-linux-gnu#g;s#@PACKAGE_VERSION@#1.2.1-1#g' htslib.pc.in > /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig/htslib.pc chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig/htslib.pc ln -sf libhts.so.1.2.1-1 /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.so ln -sf libhts.so.1.2.1-1 /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.so.1 install -p bgzip htsfile tabix /«PKGBUILDDIR»/debian/tmp/usr/bin install -p -m 644 htslib/*.h /«PKGBUILDDIR»/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /«PKGBUILDDIR»/debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.a install -p -m 644 htsfile.1 tabix.1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5 make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_install -O--parallel install -d debian/libhts1/usr/lib/powerpc64le-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.so.1 debian/libhts1/usr/lib/powerpc64le-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.so.1.2.1-1 debian/libhts1/usr/lib/powerpc64le-linux-gnu/ install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/powerpc64le-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.a debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/powerpc64le-linux-gnu/libhts.so debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/ install -d debian/libhts-dev/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/libhts-dev/usr/share/man/man5/ cp --reflink=auto -a debian/tmp/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/ cp --reflink=auto -a debian/tmp/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/ install -d debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig/ install -d debian/htslib-test//usr/share/htslib-test cp --reflink=auto -a ./test/auxf\#values.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/auxf.fa debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/auxf.fa.fai debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/c1\#bounds.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/c1\#clip.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/c1\#pad1.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/c1\#pad2.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/c1\#pad3.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/c1.fa debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/c1.fa.fai debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#1.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#2.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#5.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#5b.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#large_seq.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#tag_depadded.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#tag_padded.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#unmap.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#unmap1.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce\#unmap2.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce.fa debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/ce.fa.fai debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/compare_sam.pl debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/fieldarith.c debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/fieldarith.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/hfile.c debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/sam.c debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test-regidx.c debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test-vcf-api.c debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test-vcf-api.out debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test-vcf-sweep.c debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test-vcf-sweep.out debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test.pl debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test_view.c debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/test_view.pl debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#blank.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#large_aux.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#large_aux2.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#minimal.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#pair.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#rg.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#triplet.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx\#unsorted.sam debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx.fa debian/htslib-test//usr/share/htslib-test/ cp --reflink=auto -a ./test/xx.fa.fai debian/htslib-test//usr/share/htslib-test/ install -d debian/tabix/usr/bin cp --reflink=auto -a ./tabix debian/tabix/usr/bin/ cp --reflink=auto -a ./bgzip debian/tabix/usr/bin/ dh_installdocs -O--parallel install -d debian/libhts1/usr/share/doc/libhts1 install -p -m0644 debian/copyright debian/libhts1/usr/share/doc/libhts1/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/htslib-test/usr/share/doc/htslib-test install -p -m0644 debian/copyright debian/htslib-test/usr/share/doc/htslib-test/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright debian/rules override_dh_installchangelogs make[1]: Entering directory '/«PKGBUILDDIR»' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts1/usr/share/doc/libhts1/changelog.Debian install -p -m0644 NEWS debian/libhts1/usr/share/doc/libhts1/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installman -O--parallel man --recode UTF-8 ./vcf\.5 > vcf\.5\.new chmod 644 vcf.5.new mv -f vcf.5.new vcf.5 man --recode UTF-8 ./sam\.5 > sam\.5\.new chmod 644 sam.5.new mv -f sam.5.new sam.5 man --recode UTF-8 ./faidx\.5 > faidx\.5\.new chmod 644 faidx.5.new mv -f faidx.5.new faidx.5 install -d debian/tabix/usr/share/man/man1/ install -p -m0644 tabix.1 debian/tabix/usr/share/man/man1/tabix.1 man --recode UTF-8 ./tabix\.1 > tabix\.1\.new chmod 644 tabix.1.new mv -f tabix.1.new tabix.1 dh_lintian -O--parallel install -d debian/libhts1/usr/share/lintian/overrides install -p -m0644 debian/libhts1.lintian-overrides debian/libhts1/usr/share/lintian/overrides/libhts1 install -d debian/tabix/usr/share/lintian/overrides install -p -m0644 debian/tabix.lintian-overrides debian/tabix/usr/share/lintian/overrides/tabix dh_perl -O--parallel (grep -s -v perl:Depends debian/htslib-test.substvars; echo perl:Depends=perl) > debian/htslib-test.substvars.new mv debian/htslib-test.substvars.new debian/htslib-test.substvars dh_link -O--parallel rm -f debian/libhts1/usr/lib/powerpc64le-linux-gnu/libhts.so.1 ln -sf libhts.so.1.2.1-1 debian/libhts1/usr/lib/powerpc64le-linux-gnu/libhts.so.1 rm -f debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/libhts.so ln -sf libhts.so.1.2.1-1 debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -sf tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_compress -O--parallel cd debian/libhts1 chmod a-x usr/share/doc/libhts1/changelog.Debian usr/share/doc/libhts1/changelog gzip -9nf usr/share/doc/libhts1/changelog.Debian usr/share/doc/libhts1/changelog cd '/«PKGBUILDDIR»' cd debian/libhts-dev chmod a-x usr/share/man/man5/vcf.5 usr/share/man/man5/sam.5 usr/share/man/man5/faidx.5 usr/share/doc/libhts-dev/changelog.Debian usr/share/doc/libhts-dev/changelog gzip -9nf usr/share/man/man5/vcf.5 usr/share/man/man5/sam.5 usr/share/man/man5/faidx.5 usr/share/doc/libhts-dev/changelog.Debian usr/share/doc/libhts-dev/changelog cd '/«PKGBUILDDIR»' cd debian/htslib-test chmod a-x usr/share/doc/htslib-test/changelog.Debian usr/share/doc/htslib-test/changelog gzip -9nf usr/share/doc/htslib-test/changelog.Debian usr/share/doc/htslib-test/changelog cd '/«PKGBUILDDIR»' cd debian/tabix chmod a-x usr/share/man/man1/tabix.1 usr/share/doc/tabix/changelog.Debian usr/share/doc/tabix/changelog gzip -9nf usr/share/man/man1/tabix.1 usr/share/doc/tabix/changelog.Debian usr/share/doc/tabix/changelog cd '/«PKGBUILDDIR»' dh_fixperms -O--parallel find debian/libhts1 -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts1 ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts1/usr/share/doc -type f ! -regex 'debian/libhts1/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts1/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts1/usr/share/man debian/libhts1/usr/man/ debian/libhts1/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts1 -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts1/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts1/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts1 -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts1/usr/lib/powerpc64le-linux-gnu/perl5/5.20 debian/libhts1/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/libhts1/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts1/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts-dev ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/man debian/libhts-dev/usr/man/ debian/libhts-dev/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/perl5/5.20 debian/libhts-dev/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/libhts-dev/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/htslib-test -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/htslib-test ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/htslib-test/usr/share/doc -type f ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/htslib-test/usr/share/man debian/htslib-test/usr/man/ debian/htslib-test/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/lib/powerpc64le-linux-gnu/perl5/5.20 debian/htslib-test/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/htslib-test/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/tabix ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man debian/tabix/usr/man/ debian/tabix/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/lib/powerpc64le-linux-gnu/perl5/5.20 debian/tabix/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/tabix/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/tabix/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 dh_strip -O--parallel dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: libhts1 libhts-dev tabix dh_strip debug symbol extraction: packages to act on: libhts1 libhts-dev tabix dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libhts-dev has no unstripped objects, ignoring find: `/«PKGBUILDDIR»/debian/libhts-dev-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /«PKGBUILDDIR»/debian/libhts-dev-dbgsym and no dbgdepends, ignoring Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts1/usr/lib/powerpc64le-linux-gnu/libhts.so.1.2.1-1 strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhts-dev/usr/lib/powerpc64le-linux-gnu/libhts.a strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix dh_makeshlibs -O--parallel rm -f debian/libhts1/DEBIAN/shlibs install -d debian/libhts1/DEBIAN echo 'libhts 1 libhts1' >>debian/libhts1/DEBIAN/shlibs echo "# Automatically added by dh_makeshlibs">> debian/libhts1.postinst.debhelper sed "" /usr/share/debhelper/autoscripts/postinst-makeshlibs >> debian/libhts1.postinst.debhelper echo '# End automatically added section' >> debian/libhts1.postinst.debhelper echo "# Automatically added by dh_makeshlibs">> debian/libhts1.postrm.debhelper sed "" /usr/share/debhelper/autoscripts/postrm-makeshlibs >> debian/libhts1.postrm.debhelper echo '# End automatically added section' >> debian/libhts1.postrm.debhelper chmod 0644 debian/libhts1/DEBIAN/shlibs chown 0:0 debian/libhts1/DEBIAN/shlibs dpkg-gensymbols -plibhts1 -Idebian/libhts1.symbols -Pdebian/libhts1 "-edebian/libhts1/usr/lib/powerpc64le-linux-gnu/libhts.so.1.2.1-1\ " rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/htslib-test/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -O--parallel dpkg-shlibdeps -Tdebian/libhts1.substvars debian/libhts1/usr/lib/powerpc64le-linux-gnu/libhts.so.1.2.1-1 install -d debian/libhts-dev/DEBIAN install -d debian/htslib-test/DEBIAN install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/tabix dh_installdeb -O--parallel printf '#!/bin/sh set -e ' > debian/libhts1/DEBIAN/postinst cat debian/libhts1.postinst.debhelper >> debian/libhts1/DEBIAN/postinst chown 0:0 debian/libhts1/DEBIAN/postinst chmod 0755 debian/libhts1/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/libhts1/DEBIAN/postrm cat debian/libhts1.postrm.debhelper >> debian/libhts1/DEBIAN/postrm chown 0:0 debian/libhts1/DEBIAN/postrm chmod 0755 debian/libhts1/DEBIAN/postrm dh_gencontrol -O--parallel echo misc:Depends= >> debian/libhts1.substvars echo misc:Pre-Depends= >> debian/libhts1.substvars dpkg-gencontrol -plibhts1 -ldebian/changelog -Tdebian/libhts1.substvars -Pdebian/libhts1 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/libhts1/DEBIAN/control chown 0:0 debian/libhts1/DEBIAN/control echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/libhts-dev/DEBIAN/control chown 0:0 debian/libhts-dev/DEBIAN/control echo misc:Depends= >> debian/htslib-test.substvars echo misc:Pre-Depends= >> debian/htslib-test.substvars dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/htslib-test/DEBIAN/control chown 0:0 debian/htslib-test/DEBIAN/control echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/tabix/DEBIAN/control chown 0:0 debian/tabix/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform ppc64el: libhts1 libhts-dev tabix dh_gencontrol debug symbol wrapper: packages to act on: libhts1 libhts-dev tabix dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package libhts1 (pkgdir debian/libhts1, ddeb package dir debian/libhts1-dbgsym) dh_gencontrol debug symbol wrapper: building libhts1-dbgsym_1.2.1-1_ppc64el.ddeb dpkg-deb: building package 'libhts1-dbgsym' in '../libhts1-dbgsym_1.2.1-1_ppc64el.ddeb'. dh_gencontrol debug symbol wrapper: no debian/libhts-dev-dbgsym, skipping package libhts-dev dh_gencontrol debug symbol wrapper: processing package tabix (pkgdir debian/tabix, ddeb package dir debian/tabix-dbgsym) dh_gencontrol debug symbol wrapper: building tabix-dbgsym_1.2.1-1_ppc64el.ddeb dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.2.1-1_ppc64el.ddeb'. dh_md5sums -O--parallel (cd debian/libhts1 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/libhts1/DEBIAN/md5sums chown 0:0 debian/libhts1/DEBIAN/md5sums (cd debian/libhts-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/libhts-dev/DEBIAN/md5sums chown 0:0 debian/libhts-dev/DEBIAN/md5sums (cd debian/htslib-test >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/htslib-test/DEBIAN/md5sums chown 0:0 debian/htslib-test/DEBIAN/md5sums (cd debian/tabix >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/tabix/DEBIAN/md5sums chown 0:0 debian/tabix/DEBIAN/md5sums dh_builddeb -O--parallel dpkg-deb --build debian/libhts1 .. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libhts1 (in debian/libhts1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libhts1/DEBIAN/control, package libhts1, directory debian/libhts1 .. removing usr/share/doc/libhts1/changelog.gz pkgstripfiles: PNG optimization for package libhts1 took 0 s dpkg-deb: building package 'libhts1' in '../libhts1_1.2.1-1_ppc64el.deb'. dpkg-deb --build debian/libhts-dev .. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libhts-dev (in debian/libhts-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libhts-dev/DEBIAN/control, package libhts-dev, directory debian/libhts-dev .. removing usr/share/doc/libhts-dev/changelog.gz Searching for duplicated docs in dependency libhts1... symlinking changelog.Debian.gz in libhts-dev to file in libhts1 pkgstripfiles: PNG optimization for package libhts-dev took 0 s dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.2.1-1_ppc64el.deb'. dpkg-deb --build debian/htslib-test .. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing htslib-test (in debian/htslib-test); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/htslib-test/DEBIAN/control, package htslib-test, directory debian/htslib-test .. removing usr/share/doc/htslib-test/changelog.gz pkgstripfiles: PNG optimization for package htslib-test took 0 s dpkg-deb: building package 'htslib-test' in '../htslib-test_1.2.1-1_all.deb'. dpkg-deb --build debian/tabix .. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing tabix (in debian/tabix); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/tabix/DEBIAN/control, package tabix, directory debian/tabix .. removing usr/share/doc/tabix/changelog.gz pkgstripfiles: PNG optimization for package tabix took 0 s dpkg-deb: building package 'tabix' in '../tabix_1.2.1-1_ppc64el.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../htslib_1.2.1-1_ppc64el.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build htslib-1.2.1 dpkg-source: info: using options from htslib-1.2.1/debian/source/options: --single-debian-patch dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150903-0100 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ htslib_1.2.1-1_ppc64el.changes: ─────────────────────────────── Format: 1.8 Date: Mon, 25 May 2015 13:35:03 +0900 Source: htslib Binary: libhts1 libhts-dev htslib-test tabix Architecture: all ppc64el Version: 1.2.1-1 Distribution: wily Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Charles Plessy Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: htslib (1.2.1-1) unstable; urgency=medium . 0662716 Merge tag '1.2.1' into debian/unstable 084f27d Install NEWS as upstream changelog. 316fb96 Override a Lintian false positive. 3363679 Clean test directory. 69bf167 Corrected a typo in tabix description. Checksums-Sha1: 6e7fb728a11ade7e1969f1bc13c4dc65fe22edde 520088 htslib-test_1.2.1-1_all.deb 275addd380e2e0b9a6b00d5ea16eff9e1ad68e36 297186 libhts-dev_1.2.1-1_ppc64el.deb 905fd528be61fc1e76b74d09773db0af6e9a9339 227312 libhts1_1.2.1-1_ppc64el.deb 0c1a7d2f0575d3fe657934e5fbd1ea96ace047ff 227594 tabix_1.2.1-1_ppc64el.deb Checksums-Sha256: 250cbe9a0c75394a6e819ccb456ba81778567504983c54144837cfcf4a8a94eb 520088 htslib-test_1.2.1-1_all.deb 11693556ec86dc9db153eeff6289fe5a186960c6851ea8d9c8579ffe780b5013 297186 libhts-dev_1.2.1-1_ppc64el.deb ceb6627ae47ebf75a4674b4be2f7d3981857b3c40441bd7a320367e0f0dd58dc 227312 libhts1_1.2.1-1_ppc64el.deb d9f479d3fe6c37dc376127df61a29ba16dd891a81972ea9b54d16c4690189da2 227594 tabix_1.2.1-1_ppc64el.deb Files: f9e658cee29b6bbbc8a8501f7fba8e43 520088 science optional htslib-test_1.2.1-1_all.deb 3e310e7ee23377598b64b23edd7650a2 297186 libdevel optional libhts-dev_1.2.1-1_ppc64el.deb 541b0b3a1ac5537c8be39160593d194d 227312 libs optional libhts1_1.2.1-1_ppc64el.deb 468cfbe0e1cae46bab34b73bef6c1255 227594 science optional tabix_1.2.1-1_ppc64el.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ htslib-test_1.2.1-1_all.deb ─────────────────────────── new debian package, version 2.0. size 520088 bytes: control archive=1760 bytes. 447 bytes, 13 lines control 3237 bytes, 47 lines md5sums Package: htslib-test Source: htslib Version: 1.2.1-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4137 Depends: perl Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: Test data for HTSlib This package contains test files and scripts for the HTSlib. drwxr-xr-x root/root 0 2015-09-03 01:00 ./ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/htslib-test/ -rw-r--r-- root/root 946 2015-05-25 04:35 ./usr/share/doc/htslib-test/changelog.Debian.gz -rw-r--r-- root/root 5781 2015-05-25 04:00 ./usr/share/doc/htslib-test/copyright drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/htslib-test/ -rw-r--r-- root/root 727 2015-02-03 16:22 ./usr/share/htslib-test/auxf#values.sam -rw-r--r-- root/root 29 2015-02-03 16:22 ./usr/share/htslib-test/auxf.fa -rw-r--r-- root/root 18 2015-02-03 16:22 ./usr/share/htslib-test/auxf.fa.fai -rw-r--r-- root/root 148 2015-02-03 16:22 ./usr/share/htslib-test/c1#bounds.sam -rw-r--r-- root/root 337 2015-02-03 16:22 ./usr/share/htslib-test/c1#clip.sam -rw-r--r-- root/root 388 2015-02-03 16:22 ./usr/share/htslib-test/c1#pad1.sam -rw-r--r-- root/root 527 2015-02-03 16:22 ./usr/share/htslib-test/c1#pad2.sam -rw-r--r-- root/root 665 2015-02-03 16:22 ./usr/share/htslib-test/c1#pad3.sam -rw-r--r-- root/root 15 2015-02-03 16:22 ./usr/share/htslib-test/c1.fa -rw-r--r-- root/root 14 2015-02-03 16:22 ./usr/share/htslib-test/c1.fa.fai -rw-r--r-- root/root 342 2015-02-03 16:22 ./usr/share/htslib-test/ce#1.sam -rw-r--r-- root/root 646 2015-02-03 16:22 ./usr/share/htslib-test/ce#2.sam -rw-r--r-- root/root 1889 2015-02-03 16:22 ./usr/share/htslib-test/ce#5.sam -rw-r--r-- root/root 1853 2015-02-03 16:22 ./usr/share/htslib-test/ce#5b.sam -rw-r--r-- root/root 2147245 2015-02-03 16:22 ./usr/share/htslib-test/ce#large_seq.sam -rw-r--r-- root/root 1634 2015-02-03 16:22 ./usr/share/htslib-test/ce#tag_depadded.sam -rw-r--r-- root/root 1646 2015-02-03 16:22 ./usr/share/htslib-test/ce#tag_padded.sam -rw-r--r-- root/root 1325 2015-02-03 16:22 ./usr/share/htslib-test/ce#unmap.sam -rw-r--r-- root/root 2769 2015-02-03 16:22 ./usr/share/htslib-test/ce#unmap1.sam -rw-r--r-- root/root 5547 2015-02-03 16:22 ./usr/share/htslib-test/ce#unmap2.sam -rw-r--r-- root/root 1060702 2015-02-03 16:22 ./usr/share/htslib-test/ce.fa -rw-r--r-- root/root 230 2015-02-03 16:22 ./usr/share/htslib-test/ce.fa.fai -rwxr-xr-x root/root 4351 2015-02-03 16:22 ./usr/share/htslib-test/compare_sam.pl -rw-r--r-- root/root 2409 2015-02-03 16:22 ./usr/share/htslib-test/fieldarith.c -rw-r--r-- root/root 916 2015-02-03 16:22 ./usr/share/htslib-test/fieldarith.sam -rw-r--r-- root/root 6831 2015-02-03 16:22 ./usr/share/htslib-test/hfile.c -rw-r--r-- root/root 6591 2015-02-03 16:22 ./usr/share/htslib-test/sam.c -rw-r--r-- root/root 4271 2015-02-03 16:22 ./usr/share/htslib-test/test-regidx.c -rw-r--r-- root/root 10121 2015-02-03 16:22 ./usr/share/htslib-test/test-vcf-api.c -rw-r--r-- root/root 1936 2015-02-03 16:22 ./usr/share/htslib-test/test-vcf-api.out -rw-r--r-- root/root 3802 2015-02-03 16:22 ./usr/share/htslib-test/test-vcf-sweep.c -rw-r--r-- root/root 92 2015-02-03 16:22 ./usr/share/htslib-test/test-vcf-sweep.out -rwxr-xr-x root/root 6226 2015-02-03 16:22 ./usr/share/htslib-test/test.pl -rw-r--r-- root/root 7813 2015-02-03 16:22 ./usr/share/htslib-test/test_view.c -rwxr-xr-x root/root 2329 2015-02-03 16:22 ./usr/share/htslib-test/test_view.pl -rw-r--r-- root/root 0 2015-02-03 16:22 ./usr/share/htslib-test/xx#blank.sam -rw-r--r-- root/root 905485 2015-02-03 16:22 ./usr/share/htslib-test/xx#large_aux.sam -rw-r--r-- root/root 651 2015-02-03 16:22 ./usr/share/htslib-test/xx#large_aux2.sam -rw-r--r-- root/root 254 2015-02-03 16:22 ./usr/share/htslib-test/xx#minimal.sam -rw-r--r-- root/root 304 2015-02-03 16:22 ./usr/share/htslib-test/xx#pair.sam -rw-r--r-- root/root 517 2015-02-03 16:22 ./usr/share/htslib-test/xx#rg.sam -rw-r--r-- root/root 267 2015-02-03 16:22 ./usr/share/htslib-test/xx#triplet.sam -rw-r--r-- root/root 320 2015-02-03 16:22 ./usr/share/htslib-test/xx#unsorted.sam -rw-r--r-- root/root 51 2015-02-03 16:22 ./usr/share/htslib-test/xx.fa -rw-r--r-- root/root 29 2015-02-03 16:22 ./usr/share/htslib-test/xx.fa.fai libhts-dev_1.2.1-1_ppc64el.deb ────────────────────────────── new debian package, version 2.0. size 297186 bytes: control archive=1278 bytes. 535 bytes, 15 lines control 1660 bytes, 26 lines md5sums Package: libhts-dev Source: htslib Version: 1.2.1-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1184 Depends: libhts1 (= 1.2.1-1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: Development files for the HTSlib This package contains development files for the HTSlib: headers, static library, manual pages, etc. drwxr-xr-x root/root 0 2015-09-03 01:00 ./ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/include/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/include/htslib/ -rw-r--r-- root/root 10524 2015-02-03 16:22 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 4475 2015-02-03 16:22 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 6883 2015-02-03 16:22 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 14886 2015-02-03 16:22 ./usr/include/htslib/hts.h -rw-r--r-- root/root 1721 2015-02-03 16:22 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 2647 2015-02-03 16:22 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 21313 2015-02-03 16:22 ./usr/include/htslib/khash.h -rw-r--r-- root/root 3990 2015-02-03 16:22 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 4651 2015-02-03 16:22 ./usr/include/htslib/klist.h -rw-r--r-- root/root 2828 2015-02-03 16:22 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 8900 2015-02-03 16:22 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 10125 2015-02-03 16:22 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 6657 2015-02-03 16:22 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 5730 2015-02-03 16:22 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 15123 2015-02-03 16:22 ./usr/include/htslib/sam.h -rw-r--r-- root/root 12511 2015-02-03 16:22 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 2747 2015-02-03 16:22 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 38445 2015-02-03 16:22 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1517 2015-02-03 16:22 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 3988 2015-02-03 16:22 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/lib/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 992782 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/libhts.a lrwxrwxrwx root/root 0 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/libhts.so -> libhts.so.1.2.1-1 drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 277 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/libhts-dev/ lrwxrwxrwx root/root 0 2015-09-03 01:00 ./usr/share/doc/libhts-dev/changelog.Debian.gz -> ../libhts1/changelog.Debian.gz -rw-r--r-- root/root 5781 2015-05-25 04:00 ./usr/share/doc/libhts-dev/copyright drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/man/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/man/man5/ -rw-r--r-- root/root 2081 2015-09-03 01:00 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1535 2015-09-03 01:00 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1854 2015-09-03 01:00 ./usr/share/man/man5/vcf.5.gz libhts1_1.2.1-1_ppc64el.deb ─────────────────────────── new debian package, version 2.0. size 227312 bytes: control archive=4047 bytes. 1031 bytes, 22 lines control 294 bytes, 4 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 17 bytes, 1 lines shlibs 14282 bytes, 559 lines symbols Package: libhts1 Source: htslib Version: 1.2.1-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 681 Depends: libc6 (>= 2.17), zlib1g (>= 1:1.2.0.2) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2015-09-03 01:00 ./ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/lib/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/libhts.so.1 -> libhts.so.1.2.1-1 -rw-r--r-- root/root 657800 2015-09-03 01:00 ./usr/lib/powerpc64le-linux-gnu/libhts.so.1.2.1-1 drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/libhts1/ -rw-r--r-- root/root 946 2015-05-25 04:35 ./usr/share/doc/libhts1/changelog.Debian.gz -rw-r--r-- root/root 5781 2015-05-25 04:00 ./usr/share/doc/libhts1/copyright drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/lintian/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 102 2015-05-25 04:25 ./usr/share/lintian/overrides/libhts1 tabix_1.2.1-1_ppc64el.deb ───────────────────────── new debian package, version 2.0. size 227594 bytes: control archive=949 bytes. 929 bytes, 20 lines control 366 bytes, 6 lines md5sums Package: tabix Source: htslib Version: 1.2.1-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1119 Depends: libc6 (>= 2.17), zlib1g (>= 1:1.2.0.2) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This version of tabix is built from the HTSlib source. drwxr-xr-x root/root 0 2015-09-03 01:00 ./ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/bin/ -rwxr-xr-x root/root 526976 2015-09-03 01:00 ./usr/bin/bgzip -rwxr-xr-x root/root 592784 2015-09-03 01:00 ./usr/bin/tabix drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/doc/tabix/ -rw-r--r-- root/root 946 2015-05-25 04:35 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 5781 2015-05-25 04:00 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/lintian/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 129 2015-05-25 04:25 ./usr/share/lintian/overrides/tabix drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/man/ drwxr-xr-x root/root 0 2015-09-03 01:00 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2015-09-03 01:00 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz -rw-r--r-- root/root 2781 2015-09-03 01:00 ./usr/share/man/man1/tabix.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: ppc64el Build-Space: 50212 Build-Time: 34 Distribution: wily Host Architecture: ppc64el Install-Time: 19 Job: htslib_1.2.1-1.dsc Machine Architecture: ppc64el Package: htslib Package-Time: 53 Source-Version: 1.2.1-1 Space: 50212 Status: successful Version: 1.2.1-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150903-0100 Build needed 00:00:53, 50212k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-7861175'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-7861175/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-7861175'] Unmounting chroot for build PACKAGEBUILD-7861175... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-7861175'] Removing build PACKAGEBUILD-7861175