RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-013 3.13.0-62-generic #102-Ubuntu SMP Tue Aug 11 14:42:17 UTC 2015 ppc64le Buildd toolchain package versions: launchpad-buildd_133 python-lpbuildd_133 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.4 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 2 Sep 09:53:17 ntpdate[1620]: adjust time server 10.211.37.1 offset 0.001008 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-7857266', '/home/buildd/filecache-default/2387c8e04212eb06cac6188888dcd8c11dca9fd7'] Unpacking chroot for build PACKAGEBUILD-7857266 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-7857266'] Mounting chroot for build PACKAGEBUILD-7857266 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-7857266', 'deb http://ftpmaster.internal/ubuntu wily main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-7857266 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-7857266', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-7857266 Ign http://ftpmaster.internal wily InRelease Ign http://archive-team.internal wily InRelease Ign http://ftpmaster.internal wily-security InRelease Ign http://archive-team.internal wily Release.gpg Ign http://ftpmaster.internal wily-updates InRelease Hit http://archive-team.internal wily Release Get:1 http://ftpmaster.internal wily Release.gpg [933 B] Ign http://archive-team.internal wily/main ppc64el Packages/DiffIndex Get:2 http://ftpmaster.internal wily-security Release.gpg [933 B] Get:3 http://ftpmaster.internal wily-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal wily Release [217 kB] Ign http://archive-team.internal wily/main Translation-en Get:5 http://ftpmaster.internal wily-security Release [63.5 kB] Hit http://archive-team.internal wily/main ppc64el Packages Get:6 http://ftpmaster.internal wily-updates Release [63.5 kB] Get:7 http://ftpmaster.internal wily/main ppc64el Packages [1392 kB] Get:8 http://ftpmaster.internal wily/restricted ppc64el Packages [28 B] Get:9 http://ftpmaster.internal wily/universe ppc64el Packages [6450 kB] Get:10 http://ftpmaster.internal wily/multiverse ppc64el Packages [115 kB] Get:11 http://ftpmaster.internal wily/main Translation-en [845 kB] Get:12 http://ftpmaster.internal wily/multiverse Translation-en [107 kB] Get:13 http://ftpmaster.internal wily/restricted Translation-en [4531 B] Get:14 http://ftpmaster.internal wily/universe Translation-en [4557 kB] Get:15 http://ftpmaster.internal wily-security/main ppc64el Packages [28 B] Get:16 http://ftpmaster.internal wily-security/restricted ppc64el Packages [28 B] Get:17 http://ftpmaster.internal wily-security/universe ppc64el Packages [28 B] Get:18 http://ftpmaster.internal wily-security/multiverse ppc64el Packages [28 B] Get:19 http://ftpmaster.internal wily-security/main Translation-en [28 B] Get:20 http://ftpmaster.internal wily-security/multiverse Translation-en [28 B] Get:21 http://ftpmaster.internal wily-security/restricted Translation-en [28 B] Get:22 http://ftpmaster.internal wily-security/universe Translation-en [28 B] Get:23 http://ftpmaster.internal wily-updates/main ppc64el Packages [28 B] Get:24 http://ftpmaster.internal wily-updates/restricted ppc64el Packages [28 B] Get:25 http://ftpmaster.internal wily-updates/universe ppc64el Packages [28 B] Get:26 http://ftpmaster.internal wily-updates/multiverse ppc64el Packages [28 B] Get:27 http://ftpmaster.internal wily-updates/main Translation-en [28 B] Get:28 http://ftpmaster.internal wily-updates/multiverse Translation-en [28 B] Get:29 http://ftpmaster.internal wily-updates/restricted Translation-en [28 B] Get:30 http://ftpmaster.internal wily-updates/universe Translation-en [28 B] Fetched 13.8 MB in 12s (1143 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libtimedate-perl Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: libapt-pkg4.16 The following packages will be upgraded: apt apt-transport-https bash cpp-5 debconf dpkg dpkg-dev g++-5 gcc-5 gcc-5-base libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libcc1-0 libcryptsetup4 libdbus-1-3 libdpkg-perl libgcc-5-dev libgcc1 libgomp1 libitm1 libkmod2 libpcre3 libstdc++-5-dev libstdc++6 libsystemd0 libubsan0 libudev1 systemd systemd-sysv udev 33 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 88.0 MB of archives. After this operation, 1616 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main bash ppc64el 4.3-13ubuntu1 [615 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main dpkg ppc64el 1.18.2ubuntu3 [2097 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libgomp1 ppc64el 5.2.1-15ubuntu5 [50.5 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libitm1 ppc64el 5.2.1-15ubuntu5 [27.4 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main libatomic1 ppc64el 5.2.1-15ubuntu5 [8200 B] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libasan2 ppc64el 5.2.1-15ubuntu5 [237 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main gcc-5-base ppc64el 5.2.1-15ubuntu5 [17.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libgcc1 ppc64el 1:5.2.1-15ubuntu5 [27.6 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libubsan0 ppc64el 5.2.1-15ubuntu5 [96.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main cpp-5 ppc64el 5.2.1-15ubuntu5 [24.3 MB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libcc1-0 ppc64el 5.2.1-15ubuntu5 [31.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main g++-5 ppc64el 5.2.1-15ubuntu5 [26.0 MB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main gcc-5 ppc64el 5.2.1-15ubuntu5 [24.5 MB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libgcc-5-dev ppc64el 5.2.1-15ubuntu5 [578 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libstdc++-5-dev ppc64el 5.2.1-15ubuntu5 [1344 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libstdc++6 ppc64el 5.2.1-15ubuntu5 [409 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libapt-pkg4.16 ppc64el 1.0.9.10ubuntu6 [613 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main apt ppc64el 1.0.9.10ubuntu6 [969 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main debconf all 1.5.57ubuntu1 [136 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main libpcre3 ppc64el 2:8.35-7ubuntu5 [217 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libsystemd0 ppc64el 224-2ubuntu2 [194 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main systemd ppc64el 224-2ubuntu2 [3391 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libudev1 ppc64el 224-2ubuntu2 [57.0 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main udev ppc64el 224-2ubuntu2 [965 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libkmod2 ppc64el 21-1ubuntu1 [36.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main libapparmor1 ppc64el 2.10-0ubuntu4 [29.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libaudit-common all 1:2.4.2-1ubuntu1 [4080 B] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libaudit1 ppc64el 1:2.4.2-1ubuntu1 [37.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main libcryptsetup4 ppc64el 2:1.6.6-5ubuntu2 [70.8 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main systemd-sysv ppc64el 224-2ubuntu2 [15.1 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main apt-transport-https ppc64el 1.0.9.10ubuntu6 [24.7 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libdbus-1-3 ppc64el 1.9.20-1ubuntu2 [155 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main dpkg-dev all 1.18.2ubuntu3 [583 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main libdpkg-perl all 1.18.2ubuntu3 [194 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.0 MB in 56s (1572 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11598 files and directories currently installed.) Preparing to unpack .../bash_4.3-13ubuntu1_ppc64el.deb ... Unpacking bash (4.3-13ubuntu1) over (4.3-11ubuntu3) ... Setting up bash (4.3-13ubuntu1) ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-7857266', 'ppc64el', 'wily', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=wily', '--purge=never', '--nolog', '-A', 'altree_1.3.1-2build1.dsc'] Initiating build PACKAGEBUILD-7857266 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-62-generic #102-Ubuntu SMP Tue Aug 11 14:42:17 UTC 2015 ppc64le sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-ppc64el-013.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ altree 1.3.1-2build1 (ppc64el) 02 Sep 2015 09:54 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: altree Version: 1.3.1-2build1 Source Version: 1.3.1-2build1 Distribution: wily Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/altree-oEnFKM/altree-1.3.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/altree-oEnFKM' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-7857266/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── altree_1.3.1-2build1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-68rJOe/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libtimedate-perl Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11626 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl0-dev, libatlas-base-dev, libtest-deep-perl Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl0-dev, libatlas-base-dev, libtest-deep-perl dpkg-deb: building package 'sbuild-build-depends-altree-dummy' in '/«BUILDDIR»/resolver-qo701C/apt_archive/sbuild-build-depends-altree-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install altree build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libtimedate-perl Use 'apt-get autoremove' to remove it. The following extra packages will be installed: bash-completion bsdmainutils debhelper file fontconfig-config fonts-dejavu-core gawk gettext gettext-base ghostscript groff-base gsfonts intltool-debian latex-make libasprintf0v5 libatlas-base-dev libatlas-dev libatlas3-base libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas-dev libblas3 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgsl0-dev libgsl0ldbl libharfbuzz-icu0 libharfbuzz0b libice6 libicu55 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libmagic1 libmath-tamuanova-perl libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler52 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtamuanova-0.2 libtest-deep-perl libtexlua52 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxt6 libzzip-0-13 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures transfig ucf x11-common xdg-utils Suggested packages: wamerican wordlist whois vacation dh-make gawk-doc gettext-doc ghostscript-x hpijs groff libblas-doc liblapack-doc liblapack-dev liblapack3 cups-common fonts-droid gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html liblcms2-utils less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc binfmt-support gv postscript-viewer xpdf-reader pdf-viewer perl-tk libfile-which-perl libspreadsheet-parseexcel-perl python-pygments texlive-pstricks dot2tex libtcltk-ruby prerex xfig gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev inkscape libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl lmodern ruby wish tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc prosper texlive-latex-recommended-doc texlive-pictures-doc netpbm libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bash-completion bsdmainutils debhelper file fontconfig-config fonts-dejavu-core gawk gettext gettext-base ghostscript groff-base gsfonts intltool-debian latex-make libasprintf0v5 libatlas-base-dev libatlas-dev libatlas3-base libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas-dev libblas3 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgsl0-dev libgsl0ldbl libharfbuzz-icu0 libharfbuzz0b libice6 libicu55 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libmagic1 libmath-tamuanova-perl libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler52 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtamuanova-0.2 libtest-deep-perl libtexlua52 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxt6 libzzip-0-13 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal sbuild-build-depends-altree-dummy tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures transfig ucf x11-common xdg-utils 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB/114 MB of archives. After this operation, 446 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-altree-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ wily/main bash-completion all 1:2.1-4.1ubuntu2 [153 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0v5 ppc64el 0.19.4-1ubuntu3 [6832 B] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libxau6 ppc64el 1:1.0.8-1 [7460 B] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libxdmcp6 ppc64el 1:1.1.2-1 [11.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main libxcb1 ppc64el 1.11-0ubuntu1 [37.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libx11-data all 2:1.6.3-1ubuntu1 [113 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libx11-6 ppc64el 2:1.6.3-1ubuntu1 [573 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libxext6 ppc64el 2:1.3.3-1 [30.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main groff-base ppc64el 1.22.3-1 [1396 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils ppc64el 9.0.6ubuntu1 [175 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 ppc64el 1.4.1-1 [24.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main man-db ppc64el 2.7.2-1 [850 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main libsigsegv2 ppc64el 2.10-4 [13.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main gawk ppc64el 1:4.1.1+dfsg-1 [393 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common-data ppc64el 0.6.31-4ubuntu4 [21.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common3 ppc64el 0.6.31-4ubuntu4 [19.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libavahi-client3 ppc64el 0.6.31-4ubuntu4 [23.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 ppc64el 2.45.6-1 [1032 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main libicu55 ppc64el 55.1-4 [7760 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main libxml2 ppc64el 2.9.2+dfsg1-3ubuntu1 [606 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 ppc64el 0.6.8-3 [77.2 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main fonts-dejavu-core all 2.35-1 [1039 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main ucf all 3.0030 [55.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libexpat1 ppc64el 2.1.0-7 [76.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main libfreetype6 ppc64el 2.5.2-4ubuntu1 [333 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libfontconfig1 ppc64el 2.11.1-0ubuntu6 [141 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libgfortran3 ppc64el 5.2.1-15ubuntu5 [206 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main libgraphite2-3 ppc64el 1.2.4-3ubuntu1 [52.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main x11-common all 1:7.7+7ubuntu4 [58.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main libice6 ppc64el 2:1.0.9-1 [38.0 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libjpeg-turbo8 ppc64el 1.3.0-0ubuntu2 [119 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main liblcms2-2 ppc64el 2.6-3ubuntu2 [169 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main libpaper1 ppc64el 1.1.24+nmu2ubuntu3 [13.2 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main libpixman-1-0 ppc64el 0.32.6-3 [188 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main libsm6 ppc64el 2:1.2.2-1 [15.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily/main libjbig0 ppc64el 2.1-3.1 [26.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily/main libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:39 http://ftpmaster.internal/ubuntu/ wily/main libtiff5 ppc64el 4.0.3-12.3ubuntu2 [156 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 ppc64el 0.9.3-5.2ubuntu1 [269 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main libxi6 ppc64el 2:1.7.4-1 [28.5 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libxt6 ppc64el 1:1.1.5-0ubuntu1 [153 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main libxmu6 ppc64el 2:1.1.2-1 [42.2 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/main libxpm4 ppc64el 1:3.5.11-1 [35.3 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main libzzip-0-13 ppc64el 0.13.62-3 [24.5 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily/main poppler-data all 0.4.7-3 [1473 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-minimal ppc64el 2.7.10-3 [338 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily/main python2.7-minimal ppc64el 2.7.10-3 [971 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily/main python-minimal ppc64el 2.7.9-1 [28.4 kB] Get:50 http://ftpmaster.internal/ubuntu/ wily/main mime-support all 3.58ubuntu1 [31.6 kB] Get:51 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-stdlib ppc64el 2.7.10-3 [1763 kB] Get:52 http://ftpmaster.internal/ubuntu/ wily/main python2.7 ppc64el 2.7.10-3 [210 kB] Get:53 http://ftpmaster.internal/ubuntu/ wily/main libpython-stdlib ppc64el 2.7.9-1 [7798 B] Get:54 http://ftpmaster.internal/ubuntu/ wily/main python ppc64el 2.7.9-1 [137 kB] Get:55 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 ppc64el 1:5.22+15-2ubuntu1 [215 kB] Get:56 http://ftpmaster.internal/ubuntu/ wily/main file ppc64el 1:5.22+15-2ubuntu1 [21.2 kB] Get:57 http://ftpmaster.internal/ubuntu/ wily/main gettext-base ppc64el 0.19.4-1ubuntu3 [47.2 kB] Get:58 http://ftpmaster.internal/ubuntu/ wily/main gettext ppc64el 0.19.4-1ubuntu3 [874 kB] Get:59 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:60 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:61 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150811ubuntu1 [731 kB] Get:62 http://ftpmaster.internal/ubuntu/ wily/main libcups2 ppc64el 2.1~rc1-3 [190 kB] Get:63 http://ftpmaster.internal/ubuntu/ wily/main libcupsfilters1 ppc64el 1.0.74-1 [88.9 kB] Get:64 http://ftpmaster.internal/ubuntu/ wily/main libcupsimage2 ppc64el 2.1~rc1-3 [18.2 kB] Get:65 http://ftpmaster.internal/ubuntu/ wily/main libijs-0.35 ppc64el 0.35-11 [15.0 kB] Get:66 http://ftpmaster.internal/ubuntu/ wily/main libjbig2dec0 ppc64el 0.12-2 [55.6 kB] Get:67 http://ftpmaster.internal/ubuntu/ wily/main libgs9-common all 9.16~dfsg~0-0ubuntu1 [2941 kB] Get:68 http://ftpmaster.internal/ubuntu/ wily/main libgs9 ppc64el 9.16~dfsg~0-0ubuntu1 [2246 kB] Get:69 http://ftpmaster.internal/ubuntu/ wily/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB] Get:70 http://ftpmaster.internal/ubuntu/ wily/main ghostscript ppc64el 9.16~dfsg~0-0ubuntu1 [41.0 kB] Get:71 http://ftpmaster.internal/ubuntu/ wily/main tex-common all 6.02 [591 kB] Get:72 http://ftpmaster.internal/ubuntu/ wily/main transfig ppc64el 1:3.2.5.e-4 [621 kB] Get:73 http://ftpmaster.internal/ubuntu/ wily/universe latex-make all 2.1.19-2 [800 kB] Get:74 http://ftpmaster.internal/ubuntu/ wily/main libblas-common ppc64el 1.2.20110419-10 [3072 B] Get:75 http://ftpmaster.internal/ubuntu/ wily/universe libatlas3-base ppc64el 3.10.2-7 [2329 kB] Get:76 http://ftpmaster.internal/ubuntu/ wily/main libblas3 ppc64el 1.2.20110419-10 [156 kB] Get:77 http://ftpmaster.internal/ubuntu/ wily/main libblas-dev ppc64el 1.2.20110419-10 [157 kB] Get:78 http://ftpmaster.internal/ubuntu/ wily/universe libatlas-dev all 3.10.2-7 [22.6 kB] Get:79 http://ftpmaster.internal/ubuntu/ wily/universe libatlas-base-dev ppc64el 3.10.2-7 [3175 kB] Get:80 http://ftpmaster.internal/ubuntu/ wily/main libgsl0ldbl ppc64el 1.16+dfsg-4 [848 kB] Get:81 http://ftpmaster.internal/ubuntu/ wily/main libgsl0-dev ppc64el 1.16+dfsg-4 [1026 kB] Get:82 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz0b ppc64el 1.0.1-1build1 [137 kB] Get:83 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz-icu0 ppc64el 1.0.1-1build1 [5376 B] Get:84 http://ftpmaster.internal/ubuntu/ wily/main libkpathsea6 ppc64el 2015.20150524.37493-5build1 [51.7 kB] Get:85 http://ftpmaster.internal/ubuntu/ wily/universe libtamuanova-0.2 ppc64el 0.2-3 [7794 B] Get:86 http://ftpmaster.internal/ubuntu/ wily/universe libmath-tamuanova-perl ppc64el 1.0.2-2ubuntu3 [13.4 kB] Get:87 http://ftpmaster.internal/ubuntu/ wily/main libpaper-utils ppc64el 1.1.24+nmu2ubuntu3 [8210 B] Get:88 http://ftpmaster.internal/ubuntu/ wily/main libpoppler52 ppc64el 0.33.0-0ubuntu3 [757 kB] Get:89 http://ftpmaster.internal/ubuntu/ wily/main libpotrace0 ppc64el 1.12-1 [18.7 kB] Get:90 http://ftpmaster.internal/ubuntu/ wily/main libptexenc1 ppc64el 2015.20150524.37493-5build1 [34.0 kB] Get:91 http://ftpmaster.internal/ubuntu/ wily/main libsynctex1 ppc64el 2015.20150524.37493-5build1 [39.2 kB] Get:92 http://ftpmaster.internal/ubuntu/ wily/main libtest-deep-perl all 0.113-1 [39.5 kB] Get:93 http://ftpmaster.internal/ubuntu/ wily/main libtexlua52 ppc64el 2015.20150524.37493-5build1 [84.0 kB] Get:94 http://ftpmaster.internal/ubuntu/ wily/main libxaw7 ppc64el 2:1.0.13-1 [176 kB] Get:95 http://ftpmaster.internal/ubuntu/ wily/main preview-latex-style all 11.88-1ubuntu1 [186 kB] Get:96 http://ftpmaster.internal/ubuntu/ wily/main texlive-binaries ppc64el 2015.20150524.37493-5build1 [7282 kB] Get:97 http://ftpmaster.internal/ubuntu/ wily/main xdg-utils all 1.1.0~rc1-2ubuntu11 [54.1 kB] Get:98 http://ftpmaster.internal/ubuntu/ wily/main texlive-base all 2015.20150625-1ubuntu1 [18.1 MB] Get:99 http://ftpmaster.internal/ubuntu/ wily/main texlive-fonts-recommended all 2015.20150625-1ubuntu1 [5704 kB] Get:100 http://ftpmaster.internal/ubuntu/ wily/universe texlive-lang-french all 2015.20150810-1 [15.2 MB] Get:101 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-base all 2015.20150625-1ubuntu1 [968 kB] Get:102 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-recommended all 2015.20150625-1ubuntu1 [10.2 MB] Get:103 http://ftpmaster.internal/ubuntu/ wily/main texlive-pictures all 2015.20150625-1ubuntu1 [3089 kB] Get:104 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-extra all 2015.20150810-1 [9689 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 114 MB in 1min 2s (1815 kB/s) 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Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../texlive-latex-recommended_2015.20150625-1ubuntu1_all.deb ... Unpacking texlive-latex-recommended (2015.20150625-1ubuntu1) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../texlive-pictures_2015.20150625-1ubuntu1_all.deb ... Unpacking texlive-pictures (2015.20150625-1ubuntu1) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../texlive-latex-extra_2015.20150810-1_all.deb ... Unpacking texlive-latex-extra (2015.20150810-1) ... Selecting previously unselected package sbuild-build-depends-altree-dummy. Preparing to unpack .../sbuild-build-depends-altree-dummy.deb ... Unpacking sbuild-build-depends-altree-dummy (0.invalid.0) ... Setting up bash-completion (1:2.1-4.1ubuntu2) ... Setting up libasprintf0v5:ppc64el (0.19.4-1ubuntu3) ... Setting up libxau6:ppc64el (1:1.0.8-1) ... Setting up libxdmcp6:ppc64el (1:1.1.2-1) ... Setting up libxcb1:ppc64el (1.11-0ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu1) ... Setting up libx11-6:ppc64el (2:1.6.3-1ubuntu1) ... Setting up libxext6:ppc64el (2:1.3.3-1) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:ppc64el (1.4.1-1) ... Setting up man-db (2.7.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gawk (1:4.1.1+dfsg-1) ... Setting up libavahi-common-data:ppc64el (0.6.31-4ubuntu4) ... Setting up libavahi-common3:ppc64el (0.6.31-4ubuntu4) ... Setting up libavahi-client3:ppc64el (0.6.31-4ubuntu4) ... Setting up libglib2.0-0:ppc64el (2.45.6-1) ... No schema files found: doing nothing. Setting up libicu55:ppc64el (55.1-4) ... Setting up libxml2:ppc64el (2.9.2+dfsg1-3ubuntu1) ... Setting up libcroco3:ppc64el (0.6.8-3) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libexpat1:ppc64el (2.1.0-7) ... Setting up libfreetype6:ppc64el (2.5.2-4ubuntu1) ... Setting up libfontconfig1:ppc64el (2.11.1-0ubuntu6) ... Setting up libgfortran3:ppc64el (5.2.1-15ubuntu5) ... Setting up libgraphite2-3:ppc64el (1.2.4-3ubuntu1) ... Setting up x11-common (1:7.7+7ubuntu4) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:ppc64el (2:1.0.9-1) ... Setting up libjpeg-turbo8:ppc64el (1.3.0-0ubuntu2) ... Setting up liblcms2-2:ppc64el (2.6-3ubuntu2) ... Setting up libpaper1:ppc64el (1.1.24+nmu2ubuntu3) ... Creating config file /etc/papersize with new version Setting up libpixman-1-0:ppc64el (0.32.6-3) ... Setting up libsm6:ppc64el (2:1.2.2-1) ... Setting up libjbig0:ppc64el (2.1-3.1) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libtiff5:ppc64el (4.0.3-12.3ubuntu2) ... Setting up libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Setting up libxi6:ppc64el (2:1.7.4-1) ... Setting up libxt6:ppc64el (1:1.1.5-0ubuntu1) ... Setting up libxmu6:ppc64el (2:1.1.2-1) ... Setting up libxpm4:ppc64el (1:3.5.11-1) ... Setting up libzzip-0-13:ppc64el (0.13.62-3) ... Setting up poppler-data (0.4.7-3) ... Setting up mime-support (3.58ubuntu1) ... Setting up libpython2.7-stdlib:ppc64el (2.7.10-3) ... Setting up python2.7 (2.7.10-3) ... Setting up libpython-stdlib:ppc64el (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libmagic1:ppc64el (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150811ubuntu1) ... Setting up libcups2:ppc64el (2.1~rc1-3) ... Setting up libcupsfilters1:ppc64el (1.0.74-1) ... Setting up libcupsimage2:ppc64el (2.1~rc1-3) ... Setting up libijs-0.35:ppc64el (0.35-11) ... Setting up libjbig2dec0 (0.12-2) ... Setting up libgs9-common (9.16~dfsg~0-0ubuntu1) ... update-alternatives: using /usr/share/ghostscript/9.16 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode Setting up libgs9 (9.16~dfsg~0-0ubuntu1) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ... Setting up ghostscript (9.16~dfsg~0-0ubuntu1) ... Setting up tex-common (6.02) ... update-language: texlive-base not installed and configured, doing nothing! Setting up transfig (1:3.2.5.e-4) ... Setting up latex-make (2.1.19-2) ... update-language: texlive-base not installed and configured, doing nothing! Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done. Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done. update-fmtutil has updated the following file(s): /var/lib/texmf/fmtutil.cnf-DEBIAN /var/lib/texmf/fmtutil.cnf-TEXLIVEDIST If you want to activate the changes in the above file(s), you should run fmtutil-sys or fmtutil. Setting up libblas-common (1.2.20110419-10) ... Setting up libatlas3-base (3.10.2-7) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libblas3 (1.2.20110419-10) ... Setting up libblas-dev (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libatlas-dev (3.10.2-7) ... Setting up libatlas-base-dev (3.10.2-7) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libgsl0ldbl:ppc64el (1.16+dfsg-4) ... Setting up libgsl0-dev (1.16+dfsg-4) ... Setting up libharfbuzz0b:ppc64el (1.0.1-1build1) ... Setting up libharfbuzz-icu0:ppc64el (1.0.1-1build1) ... Setting up libkpathsea6 (2015.20150524.37493-5build1) ... Setting up libtamuanova-0.2 (0.2-3) ... Setting up libmath-tamuanova-perl (1.0.2-2ubuntu3) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ... Setting up libpoppler52:ppc64el (0.33.0-0ubuntu3) ... Setting up libpotrace0 (1.12-1) ... Setting up libptexenc1 (2015.20150524.37493-5build1) ... Setting up libsynctex1 (2015.20150524.37493-5build1) ... Setting up libtest-deep-perl (0.113-1) ... Setting up libtexlua52 (2015.20150524.37493-5build1) ... Setting up libxaw7:ppc64el (2:1.0.13-1) ... Setting up preview-latex-style (11.88-1ubuntu1) ... update-language: texlive-base not installed and configured, doing nothing! Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done. Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done. update-fmtutil has updated the following file(s): /var/lib/texmf/fmtutil.cnf-DEBIAN /var/lib/texmf/fmtutil.cnf-TEXLIVEDIST If you want to activate the changes in the above file(s), you should run fmtutil-sys or fmtutil. Setting up texlive-binaries (2015.20150524.37493-5build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up xdg-utils (1.1.0~rc1-2ubuntu11) ... Processing triggers for tex-common (6.02) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-base (2015.20150625-1ubuntu1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for tex-common (6.02) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-lang-french (2015.20150810-1) ... Setting up texlive-latex-base (2015.20150625-1ubuntu1) ... Setting up texlive-fonts-recommended (2015.20150625-1ubuntu1) ... Processing triggers for tex-common (6.02) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-recommended (2015.20150625-1ubuntu1) ... Setting up texlive-pictures (2015.20150625-1ubuntu1) ... Processing triggers for tex-common (6.02) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-extra (2015.20150810-1) ... Processing triggers for tex-common (6.02) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-altree-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Processing triggers for systemd (224-2ubuntu2) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-62-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.25.1-1ubuntu1 dpkg-dev_1.18.2ubuntu3 g++-5_5.2.1-15ubuntu5 gcc-5_5.2.1-15ubuntu5 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-15ubuntu5 libstdc++6_5.2.1-15ubuntu5 linux-libc-dev_4.1.0-3.3 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.9.10ubuntu6 apt-transport-https_1.0.9.10ubuntu6 base-files_7.2ubuntu10 base-passwd_3.5.38 bash_4.3-13ubuntu1 bash-completion_1:2.1-4.1ubuntu2 binutils_2.25.1-1ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu3 build-essential_11.6ubuntu6 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-3ubuntu1 cpp_4:5.2.1-3ubuntu1 cpp-5_5.2.1-15ubuntu5 dash_0.5.7-4ubuntu2 debconf_1.5.57ubuntu1 debhelper_9.20150811ubuntu1 debianutils_4.5.1 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.2ubuntu3 dpkg-dev_1.18.2ubuntu3 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 fakeroot_1.20.2-1ubuntu1 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 fontconfig-config_2.11.1-0ubuntu6 fonts-dejavu-core_2.35-1 g++_4:5.2.1-3ubuntu1 g++-5_5.2.1-15ubuntu5 gawk_1:4.1.1+dfsg-1 gcc_4:5.2.1-3ubuntu1 gcc-5_5.2.1-15ubuntu5 gcc-5-base_5.2.1-15ubuntu5 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 ghostscript_9.16~dfsg~0-0ubuntu1 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gsfonts_1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 gzip_1.6-4ubuntu1 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 latex-make_2.1.19-2 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu4 libapt-pkg4.12_1.0.9.10ubuntu1 libapt-pkg4.16_1.0.9.10ubuntu6 libasan2_5.2.1-15ubuntu5 libasn1-8-heimdal_1.6~rc2+dfsg-10 libasprintf0v5_0.19.4-1ubuntu3 libatlas-base-dev_3.10.2-7 libatlas-dev_3.10.2-7 libatlas3-base_3.10.2-7 libatomic1_5.2.1-15ubuntu5 libattr1_1:2.4.47-2 libaudit-common_1:2.4.2-1ubuntu1 libaudit1_1:2.4.2-1ubuntu1 libavahi-client3_0.6.31-4ubuntu4 libavahi-common-data_0.6.31-4ubuntu4 libavahi-common3_0.6.31-4ubuntu4 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.26.2-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-9 libcap2-bin_1:2.24-9 libcc1-0_5.2.1-15ubuntu5 libcomerr2_1.42.12-1ubuntu2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5ubuntu2 libcups2_2.1~rc1-3 libcupsfilters1_1.0.74-1 libcupsimage2_2.1~rc1-3 libcurl3-gnutls_7.43.0-1ubuntu1 libdb5.3_5.3.28-9 libdbus-1-3_1.9.20-1ubuntu2 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.2ubuntu3 libexpat1_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu3 libffi6_3.2.1-3 libfontconfig1_2.11.1-0ubuntu6 libfreetype6_2.5.2-4ubuntu1 libgcc-5-dev_5.2.1-15ubuntu5 libgcc1_1:5.2.1-15ubuntu5 libgcrypt20_1.6.3-2ubuntu1 libgdbm3_1.8.3-13.1 libgfortran3_5.2.1-15ubuntu5 libglib2.0-0_2.45.6-1 libgmp10_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu1 libgomp1_5.2.1-15ubuntu5 libgpg-error0_1.19-2 libgraphite2-3_1.2.4-3ubuntu1 libgs9_9.16~dfsg~0-0ubuntu1 libgs9-common_9.16~dfsg~0-0ubuntu1 libgsl0-dev_1.16+dfsg-4 libgsl0ldbl_1.16+dfsg-4 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10 libharfbuzz-icu0_1.0.1-1build1 libharfbuzz0b_1.0.1-1build1 libhcrypto4-heimdal_1.6~rc2+dfsg-10 libheimbase1-heimdal_1.6~rc2+dfsg-10 libheimntlm0-heimdal_1.6~rc2+dfsg-10 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10 libice6_2:1.0.9-1 libicu55_55.1-4 libidn11_1.28-1ubuntu2 libijs-0.35_0.35-11 libisl13_0.14-2 libitm1_5.2.1-15ubuntu5 libjbig0_2.1-3.1 libjbig2dec0_0.12-2 libjpeg-turbo8_1.3.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkpathsea6_2015.20150524.37493-5build1 libkrb5-26-heimdal_1.6~rc2+dfsg-10 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblcms2-2_2.6-3ubuntu2 libldap-2.4-2_2.4.41+dfsg-1ubuntu1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmath-tamuanova-perl_1.0.2-2ubuntu3 libmount1_2.26.2-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpaper-utils_1.1.24+nmu2ubuntu3 libpaper1_1.1.24+nmu2ubuntu3 libpcre3_2:8.35-7ubuntu5 libpipeline1_1.4.1-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.51-0ubuntu3 libpoppler52_0.33.0-0ubuntu3 libpotrace0_1.12-1 libprocps3_1:3.3.9-1ubuntu8 libptexenc1_2015.20150524.37493-5build1 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-3 libpython2.7-stdlib_2.7.10-3 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1build1 libsemanage1_2.3-1build1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.26.2-6ubuntu3 libsqlite3-0_3.8.11.1-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-5-dev_5.2.1-15ubuntu5 libstdc++6_5.2.1-15ubuntu5 libsynctex1_2015.20150524.37493-5build1 libsystemd0_224-2ubuntu2 libtamuanova-0.2_0.2-3 libtasn1-6_4.5-2 libtest-deep-perl_0.113-1 libtexlua52_2015.20150524.37493-5build1 libtiff5_4.0.3-12.3ubuntu2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libubsan0_5.2.1-15ubuntu5 libudev1_224-2ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10 libx11-6_2:1.6.3-1ubuntu1 libx11-data_2:1.6.3-1ubuntu1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb1_1.11-0ubuntu1 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxi6_2:1.7.4-1 libxml2_2.9.2+dfsg1-3ubuntu1 libxmu6_2:1.1.2-1 libxpm4_1:3.5.11-1 libxt6_1:1.1.5-0ubuntu1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.1.0-3.3 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 make_4.0-8.1 man-db_2.7.2-1 mawk_1.3.3-17ubuntu2 mime-support_3.58ubuntu1 mount_2.26.2-6ubuntu3 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.69 pkgbinarymangler_121 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 poppler-data_0.4.7-3 preview-latex-style_11.88-1ubuntu1 procps_1:3.3.9-1ubuntu8 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.10-3 python2.7-minimal_2.7.10-3 readline-common_6.3-8ubuntu1 sbuild-build-depends-altree-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_224-2ubuntu2 systemd-sysv_224-2ubuntu2 sysv-rc_2.88dsf-59.2ubuntu1 sysvinit-utils_2.88dsf-59.2ubuntu1 tar_1.27.1-2 tex-common_6.02 texlive-base_2015.20150625-1ubuntu1 texlive-binaries_2015.20150524.37493-5build1 texlive-fonts-recommended_2015.20150625-1ubuntu1 texlive-lang-french_2015.20150810-1 texlive-latex-base_2015.20150625-1ubuntu1 texlive-latex-extra_2015.20150810-1 texlive-latex-recommended_2015.20150625-1ubuntu1 texlive-pictures_2015.20150625-1ubuntu1 transfig_1:3.2.5.e-4 tzdata_2015f-1 ubuntu-keyring_2012.05.19 ucf_3.0030 udev_224-2ubuntu2 util-linux_2.26.2-6ubuntu3 x11-common_1:7.7+7ubuntu4 xdg-utils_1.1.0~rc1-2ubuntu11 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Aug 21 11:13:03 2014 UTC using RSA key ID 7D86500B gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./altree_1.3.1-2build1.dsc dpkg-source: info: extracting altree in altree-1.3.1 dpkg-source: info: unpacking altree_1.3.1.orig.tar.gz dpkg-source: info: unpacking altree_1.3.1-2build1.debian.tar.gz dpkg-source: info: applying from-upstream-no-nested-functions.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package altree dpkg-buildpackage: source version 1.3.1-2build1 dpkg-buildpackage: source distribution utopic dpkg-source --before-build altree-1.3.1 dpkg-buildpackage: host architecture ppc64el fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/make -C Documentation distclean make[2]: Entering directory '/«PKGBUILDDIR»/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/«PKGBUILDDIR»/Documentation' dh_auto_clean make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean debian/rules build dh build dh_testdir dh_auto_configure perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2" "LD=cc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro" Checking if your kit is complete... Looks good MakeMaker (v6.98) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/«PKGBUILDDIR»/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated (texgraphicx) Please, consider switching to 'figlatex' package (texgraphicx) on input line 47. Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143. Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146. Package texdepends Warning: No 'fig/altree-q.pdftex' file (texdepends) using 1 for graphic dimensions on input line 150. Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 150. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] LaTeX Warning: Reference `help' on page 13 undefined on input line 564. Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Package texdepends Warning: No 'fig/create_file_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1009. Package texdepends Warning: Figure 'fig/create_file_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1009. Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Package texdepends Warning: No 'fig/create_file_phy.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1043. Package texdepends Warning: Figure 'fig/create_file_phy.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1043. Package texdepends Warning: No 'fig/association_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1104. Package texdepends Warning: Figure 'fig/association_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1104. Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1130. Package texdepends Warning: Figure 'fig/localisation_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1130. Package texdepends Warning: No 'fig/association_phylip.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1168. Package texdepends Warning: Figure 'fig/association_phylip.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1168. Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig/association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/«PKGBUILDDIR»/Documentation' LaTeX.mk:787: fig/option_b.subfig.mk: No such file or directory ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=2 manual.pdf make[4]: Entering directory '/«PKGBUILDDIR»/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2015/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/overview.pdftex <====== ======> building fig/overview.pdftex_t <====== ======> building fig/altree-q.pdftex <====== ======> building fig/altree-q.pdftex_t <====== ======> building fig/option_b_1.fig <====== ======> building fig/option_b_2.fig <====== ======> building fig/create_file_paup.pdftex <====== ======> building fig/create_file_paup.pdftex_t <====== ======> building fig/create_file_phy.pdftex <====== ======> building fig/create_file_phy.pdftex_t <====== ======> building fig/association_paup.pdftex <====== ======> building fig/association_paup.pdftex_t <====== ======> building fig/localisation_paup.pdftex <====== ======> building fig/localisation_paup.pdftex_t <====== ======> building fig/association_phylip.pdftex <====== ======> building fig/association_phylip.pdftex_t <====== ======> building fig/association_paml.pdftex <====== ======> building fig/association_paml.pdftex_t <====== ======> building fig/localisation_paml.pdftex <====== ======> building fig/localisation_paml.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/«PKGBUILDDIR»/Documentation' make[5]: Leaving directory '/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated (texgraphicx) Please, consider switching to 'figlatex' package (texgraphicx) on input line 47. Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package natbib Warning: Citation `Guindon03' on page 26 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. Package natbib Warning: Citation(s) may have changed. (natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/«PKGBUILDDIR»/Documentation' make[5]: Leaving directory '/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=3 manual.pdf make[6]: Entering directory '/«PKGBUILDDIR»/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2015/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/option_b_1.pdftex <====== ======> building fig/option_b_1.pdftex_t <====== ======> building fig/option_b_2.pdftex <====== ======> building fig/option_b_2.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/«PKGBUILDDIR»/Documentation' make[7]: Leaving directory '/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated (texgraphicx) Please, consider switching to 'figlatex' package (texgraphicx) on input line 47. Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/«PKGBUILDDIR»/Documentation' make[7]: Leaving directory '/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/«PKGBUILDDIR»/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2015/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/«PKGBUILDDIR»/Documentation' make[9]: Leaving directory '/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated (texgraphicx) Please, consider switching to 'figlatex' package (texgraphicx) on input line 47. Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory '/«PKGBUILDDIR»/Documentation' make[9]: Leaving directory '/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory '/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory '/«PKGBUILDDIR»/Documentation' make[10]: 'manual.pdf' is up to date. make[10]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[9]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[8]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[7]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[6]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[5]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[4]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[3]: Leaving directory '/«PKGBUILDDIR»/Documentation' make[2]: Leaving directory '/«PKGBUILDDIR»/Documentation' dh_auto_build make -j1 make[2]: Entering directory '/«PKGBUILDDIR»' cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm make[3]: Entering directory '/«PKGBUILDDIR»/CUtils' cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) make -C c_sources make[4]: Entering directory '/«PKGBUILDDIR»/CUtils/c_sources' cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" chisq.c chisq.c: In function 'pochisq': chisq.c:81:19: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] double a, y, s; ^ cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" double_permutation.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" fisher.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" mt19937ar.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" myrand.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" resampling.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" rhyper.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" stats.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" z.c z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable] static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; ^ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[4]: Leaving directory '/«PKGBUILDDIR»/CUtils/c_sources' make[4]: Entering directory '/«PKGBUILDDIR»/CUtils/c_sources' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/CUtils/c_sources' Running Mkbootstrap for ALTree::CUtils () chmod 644 CUtils.bs /usr/bin/perl /usr/share/perl/5.20.2/ExtUtils/xsubpp -typemap /usr/share/perl/5.20/ExtUtils/typemap CUtils.xs > CUtils.xsc && mv CUtils.xsc CUtils.c Please specify prototyping behavior for CUtils.xs (see perlxs manual) cc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE" CUtils.c In file included from CUtils.xs:5:0: ppport.h:237:0: warning: "PERL_UNUSED_DECL" redefined # define PERL_UNUSED_DECL ^ In file included from CUtils.xs:2:0: /usr/lib/powerpc64le-linux-gnu/perl/5.20/CORE/perl.h:302:0: note: this is the location of the previous definition # define PERL_UNUSED_DECL __attribute__unused__ ^ CUtils.xs: In function 'XS_ALTree__CUtils_RHyper': CUtils.xs:69:16: warning: implicit declaration of function 'rhyper' [-Wimplicit-function-declaration] RETVAL=rhyper(n1, n2, k); ^ rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so cc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lcblas \ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so /usr/bin/perl -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 Manifying ../blib/man3/ALTree::CUtils.3pm make[3]: Leaving directory '/«PKGBUILDDIR»/CUtils' cp progs/altree-add-S blib/script/altree-add-S /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S cp progs/altree blib/script/altree /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree cp progs/altree-convert blib/script/altree-convert /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying blib/man1/altree.1p Manifying blib/man1/altree-add-S.1p Manifying blib/man1/altree-convert.1p make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test make -j1 test TEST_VERBOSE=1 make[1]: Entering directory '/«PKGBUILDDIR»' make[2]: Entering directory '/«PKGBUILDDIR»/CUtils' make[3]: Entering directory '/«PKGBUILDDIR»/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/CUtils/c_sources' Running Mkbootstrap for ALTree::CUtils () chmod 644 CUtils.bs make[2]: Leaving directory '/«PKGBUILDDIR»/CUtils' PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.06 cusr 0.00 csys = 0.08 CPU) Result: PASS make[2]: Entering directory '/«PKGBUILDDIR»/CUtils' make[3]: Entering directory '/«PKGBUILDDIR»/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/CUtils/c_sources' PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.06 cusr 0.00 csys = 0.08 CPU) Result: PASS make[3]: Entering directory '/«PKGBUILDDIR»/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/«PKGBUILDDIR»/CUtils/c_sources' make[2]: Leaving directory '/«PKGBUILDDIR»/CUtils' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/make PREFIX=debian/altree/usr install make[2]: Entering directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»/CUtils' make[4]: Entering directory '/«PKGBUILDDIR»/CUtils/c_sources' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/CUtils/c_sources' make[3]: Leaving directory '/«PKGBUILDDIR»/CUtils' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/auto/ALTree/CUtils/CUtils.so Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/auto/ALTree/CUtils/autosplit.ix Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Chi2.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Node.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Utils.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Foret.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Nanova.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/SitePerForet.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Import.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Sens.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/CUtils.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/SiteSens.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Site.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/to_rewrite.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/SiteSensPerForet.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/SitePerTree.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/SiteSensPerTree.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Input.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Tree.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/SiteCollection.pm Installing debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/ALTree/Base.pm Installing debian/altree/usr/share/man/man1/altree-convert.1p Installing debian/altree/usr/share/man/man1/altree-add-S.1p Installing debian/altree/usr/share/man/man1/altree.1p Installing debian/altree/usr/share/man/man3/ALTree::CUtils.3pm Installing debian/altree/usr/bin/altree Installing debian/altree/usr/bin/altree-convert Installing debian/altree/usr/bin/altree-add-S make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link debian/rules override_dh_compress make[1]: Entering directory '/«PKGBUILDDIR»' dh_compress --exclude=.pdf make[1]: Leaving directory '/«PKGBUILDDIR»' dh_fixperms dh_strip dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: altree dh_strip debug symbol extraction: packages to act on: altree dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package altree: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/powerpc64le-linux-gnu/perl5/5.20/auto/ALTree/CUtils/CUtils.so was not linked against libcblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform ppc64el: altree dh_gencontrol debug symbol wrapper: packages to act on: altree dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package altree (pkgdir debian/altree, ddeb package dir debian/altree-dbgsym) dh_gencontrol debug symbol wrapper: building altree-dbgsym_1.3.1-2build1_ppc64el.ddeb dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.1-2build1_ppc64el.ddeb'. dh_md5sums debian/rules override_dh_builddeb make[1]: Entering directory '/«PKGBUILDDIR»' dh_builddeb -- -Z xz INFO: pkgstriptranslations version 121 pkgstriptranslations: processing altree (in debian/altree); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/altree/DEBIAN/control, package altree, directory debian/altree pkgstripfiles: Truncating usr/share/doc/altree/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package altree took 0 s dpkg-deb: building package 'altree' in '../altree_1.3.1-2build1_ppc64el.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing altree-examples (in debian/altree-examples); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/altree-examples/DEBIAN/control, package altree-examples, directory debian/altree-examples pkgstripfiles: Truncating usr/share/doc/altree-examples/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package altree-examples took 0 s dpkg-deb: building package 'altree-examples' in '../altree-examples_1.3.1-2build1_all.deb'. make[1]: Leaving directory '/«PKGBUILDDIR»' dpkg-genchanges -b -mLaunchpad Build Daemon >../altree_1.3.1-2build1_ppc64el.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build altree-1.3.1 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150902-0956 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ altree_1.3.1-2build1_ppc64el.changes: ───────────────────────────────────── Format: 1.8 Date: Thu, 21 Aug 2014 12:12:59 +0100 Source: altree Binary: altree altree-examples Architecture: all ppc64el Version: 1.3.1-2build1 Distribution: wily Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Colin Watson Description: altree - program to perform phylogeny-based association and localization a altree-examples - example files for ALTree Changes: altree (1.3.1-2build1) utopic; urgency=medium . * Rebuild for Perl 5.20.0. Checksums-Sha1: 293ed1d87401e1f7f487d9d55d8c22496b6b5849 327856 altree-examples_1.3.1-2build1_all.deb 3551b9f4bd0b0466f3f82adf5509738a3e3f67e5 339044 altree_1.3.1-2build1_ppc64el.deb Checksums-Sha256: 8307febd766235ddfe39e5cf2fa8f45a46d86c47b995f409e2b361ac43321e4f 327856 altree-examples_1.3.1-2build1_all.deb eb513c7ce57230a8bde688d7c9e04b51b9ab6ddf6e5e1a8870f9a2c7a4fe52a0 339044 altree_1.3.1-2build1_ppc64el.deb Files: cd988941f06f24f7c7eeb02ae22536df 327856 science optional altree-examples_1.3.1-2build1_all.deb 3cb6aee60dca6ea17e564cdedb3094e6 339044 science optional altree_1.3.1-2build1_ppc64el.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ altree-examples_1.3.1-2build1_all.deb ───────────────────────────────────── new debian package, version 2.0. size 327856 bytes: control archive=4596 bytes. 822 bytes, 19 lines control 18383 bytes, 168 lines md5sums Package: altree-examples Source: altree Version: 1.3.1-2build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 576 Recommends: altree (= 1.3.1-2build1) Section: science Priority: optional Homepage: http://claire.bardel.free.fr/software.html Description: example files for ALTree ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. . This package contains the example files for the ALTree package discussed in its PDF manual. drwxr-xr-x root/root 0 2015-09-02 09:56 ./ drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/ drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/ drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/doc/altree-examples/ -rw-r--r-- root/root 2328 2015-09-02 09:56 ./usr/share/doc/altree-examples/changelog.Debian.gz -rw-r--r-- root/root 1363 2012-04-22 06:52 ./usr/share/doc/altree-examples/copyright drwxr-xr-x root/root 0 2013-12-13 22:15 ./usr/share/doc/altree-examples/create_file/ drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/doc/altree-examples/create_file/paup_file/ -rw-r--r-- root/root 833 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/caco.phase.gz -rw-r--r-- root/root 3686 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/caco.phase.out.gz -rw-r--r-- root/root 1920 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/caco.phase.out_freqs -rw-r--r-- root/root 884 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/caco.phase.out_monitor -rw-r--r-- root/root 955 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/caco.phase.out_pairs.gz -rw-r--r-- root/root 4049 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/caco.phase.out_recom.gz -rw-r--r-- root/root 1159 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/caco.prepaup -rw-r--r-- root/root 371 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/create_file -rw-r--r-- root/root 210 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/paup_file/nb_cas_control.txt drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/doc/altree-examples/create_file/phy-paml_file/ -rw-r--r-- root/root 525 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/NUM -rw-r--r-- root/root 266 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/create_file -rw-r--r-- root/root 95 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/fam19_0.gm -rw-r--r-- root/root 1731 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/fam19_0.gz -rw-r--r-- root/root 1272 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES.gz -rw-r--r-- root/root 1819 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt -rw-r--r-- root/root 1818 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt -rw-r--r-- root/root 525 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/nb_cas_control.txt -rw-r--r-- root/root 1331 2012-10-28 20:50 ./usr/share/doc/altree-examples/create_file/phy-paml_file/trio.fmh.gz -rw-r--r-- root/root 777 2012-10-28 20:50 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./usr/share/doc/altree-examples/phylip/outgroup_present/association/trio.phy altree_1.3.1-2build1_ppc64el.deb ──────────────────────────────── new debian package, version 2.0. size 339044 bytes: control archive=1719 bytes. 962 bytes, 19 lines control 2764 bytes, 33 lines md5sums Package: altree Version: 1.3.1-2build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 556 Depends: libatlas3-base, libc6 (>= 2.17), libgsl0ldbl (>= 1.9), perl (>= 5.20.2-6), perlapi-5.20.2, libmath-tamuanova-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Section: science Priority: optional Homepage: http://claire.bardel.free.fr/software.html Description: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it 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./usr/share/doc/altree/copyright -rw-r--r-- root/root 266890 2015-09-02 09:56 ./usr/share/doc/altree/manual.pdf drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/man/ drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/man/man1/ -rw-r--r-- root/root 2683 2015-09-02 09:56 ./usr/share/man/man1/altree-add-S.1p.gz -rw-r--r-- root/root 2748 2015-09-02 09:56 ./usr/share/man/man1/altree-convert.1p.gz -rw-r--r-- root/root 3767 2015-09-02 09:56 ./usr/share/man/man1/altree.1p.gz drwxr-xr-x root/root 0 2015-09-02 09:56 ./usr/share/man/man3/ -rw-r--r-- root/root 2522 2015-09-02 09:56 ./usr/share/man/man3/ALTree::CUtils.3pm.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: ppc64el Build-Space: 16804 Build-Time: 16 Distribution: wily Host Architecture: ppc64el Install-Time: 107 Job: altree_1.3.1-2build1.dsc Machine Architecture: ppc64el Package: altree Package-Time: 125 Source-Version: 1.3.1-2build1 Space: 16804 Status: successful Version: 1.3.1-2build1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150902-0956 Build needed 00:02:05, 16804k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-7857266'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-7857266/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-7857266'] Unmounting chroot for build PACKAGEBUILD-7857266... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-7857266'] Removing build PACKAGEBUILD-7857266