https://launchpad.net/ubuntu/+archive/test-rebuild-20240502-noble/+build/28158968
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux bos01-arm64-028 5.4.0-181-generic #201-Ubuntu SMP Thu Mar 28 15:39:18 UTC 2024 aarch64
Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1.
Syncing the system clock with the buildd NTP service...
12 May 12:55:13 ntpdate[1965]: adjust time server 10.211.37.1 offset -0.000210 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28158968 --image-type chroot /home/buildd/filecache-default/0aaa0d191106d33e51979a9c6a062e50b7f5b3b2
Creating target for build PACKAGEBUILD-28158968
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28158968
Starting target for build PACKAGEBUILD-28158968
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28158968 'deb http://ftpmaster.internal/ubuntu noble main universe'
Overriding sources.list in build-PACKAGEBUILD-28158968
RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28158968
Updating target for build PACKAGEBUILD-28158968
Get:1 http://ftpmaster.internal/ubuntu noble InRelease [256 kB]
Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 Packages [1377 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main Translation-en [513 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 Packages [15.3 MB]
Get:5 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5982 kB]
Fetched 23.4 MB in 4s (5328 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
  libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30*
  libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3*
  libtirpc3* usrmerge*
The following NEW packages will be installed:
  cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu g++-13-aarch64-linux-gnu
  g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-14-base
  gcc-aarch64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64
  libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64
  libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64
  libtirpc3t64 libunistring5 perl-modules-5.38
The following packages will be upgraded:
  advancecomp apt apt-utils base-files base-passwd bash bash-completion
  binutils binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils
  bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n
  debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13
  gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init
  init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8
  libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils
  libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0
  libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12
  libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl
  libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10
  libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0
  libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4
  libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0
  liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1
  liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2
  libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin
  libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1
  libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1
  libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared
  libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6
  libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0
  libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make
  mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl
  perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed
  sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata
  ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g
176 upgraded, 23 newly installed, 14 to remove and 0 not upgraded.
Need to get 116 MB of archives.
After this operation, 77.5 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B]
Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1build1 [201 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3build3 [72.5 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl2 arm64 1.3.0-3build3 [41.6 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1build1 [83.6 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libgssapi-krb5-2 arm64 1.20.1-6ubuntu2 [141 kB]
Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5-3 arm64 1.20.1-6ubuntu2 [349 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libk5crypto3 arm64 1.20.1-6ubuntu2 [85.6 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5support0 arm64 1.20.1-6ubuntu2 [33.9 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libacl1 arm64 2.3.2-1build1 [17.0 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libapparmor1 arm64 4.0.0-beta3-0ubuntu3 [50.0 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit-common all 1:3.1.2-2.1build1 [5736 B]
Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcap-ng0 arm64 0.8.4-2build2 [14.8 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit1 arm64 1:3.1.2-2.1build1 [47.6 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libblkid1 arm64 2.39.3-9ubuntu6 [123 kB]
Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcap2 arm64 1:2.66-5ubuntu2 [30.2 kB]
Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4build1 [118 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt1 arm64 1:4.4.36-4build1 [85.9 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error-l10n all 1.47-3build2 [8064 B]
Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error0 arm64 1.47-3build2 [70.0 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgcrypt20 arm64 1.10.3-2build1 [472 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma5 arm64 5.6.1+really5.4.5-1 [125 kB]
Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libzstd1 arm64 1.5.5+dfsg2-2build1 [271 kB]
Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libkmod2 arm64 31+20240202-2ubuntu7 [51.8 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 liblz4-1 arm64 1.9.4-1build1 [64.1 kB]
Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-8-0 arm64 10.42-4ubuntu2 [212 kB]
Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libselinux1 arm64 3.5-2ubuntu2 [79.9 kB]
Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libmount1 arm64 2.39.3-9ubuntu6 [133 kB]
Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-7 [732 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm6t64 arm64 1.23-5.1build1 [34.4 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm-compat4t64 arm64 1.23-5.1build1 [6578 B]
Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libperl5.38t64 arm64 5.38.2-3.2build2 [4774 kB]
Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 perl arm64 5.38.2-3.2build2 [231 kB]
Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 perl-base arm64 5.38.2-3.2build2 [1777 kB]
Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 liblocale-gettext-perl arm64 1.07-6ubuntu5 [15.3 kB]
Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-iconv-perl arm64 1.7-8build3 [13.1 kB]
Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-charwidth-perl arm64 0.04-11build3 [9406 B]
Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 libnss-nisplus arm64 1.3-5build1 [22.5 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 libnss-nis arm64 3.1-0ubuntu7 [26.6 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu8 [19.7 kB]
Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu7 [64.8 kB]
Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu8 [1596 kB]
Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu8 [2774 kB]
Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu8 [591 kB]
Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 openssl arm64 3.0.13-0ubuntu3 [984 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libsystemd-shared arm64 255.4-1ubuntu8 [2016 kB]
Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libcryptsetup12 arm64 2:2.7.0-1ubuntu4 [262 kB]
Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3t64 arm64 3.0.13-0ubuntu3 [1793 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 systemd-dev all 255.4-1ubuntu8 [104 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 systemd-sysv arm64 255.4-1ubuntu8 [11.9 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 systemd arm64 255.4-1ubuntu8 [3403 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libsystemd0 arm64 255.4-1ubuntu8 [424 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules-bin arm64 1.5.3-5ubuntu5 [50.4 kB]
Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules arm64 1.5.3-5ubuntu5 [278 kB]
Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libnettle8t64 arm64 3.9.1-2.2build1 [192 kB]
Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libhogweed6t64 arm64 3.9.1-2.2build1 [199 kB]
Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libp11-kit0 arm64 0.25.3-4ubuntu2 [276 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libunistring5 arm64 1.1-2build1 [530 kB]
Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libgnutls30t64 arm64 3.8.3-1.1ubuntu3 [942 kB]
Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libapt-pkg6.0t64 arm64 2.7.14build2 [935 kB]
Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 bzip2 arm64 1.0.8-5.1 [34.0 kB]
Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-1.0 arm64 1.0.8-5.1 [35.7 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-14-base arm64 14-20240412-0ubuntu1 [47.6 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-s1 arm64 14-20240412-0ubuntu1 [61.7 kB]
Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++6 arm64 14-20240412-0ubuntu1 [748 kB]
Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libudev1 arm64 255.4-1ubuntu8 [173 kB]
Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxxhash0 arm64 0.8.2-2build1 [21.7 kB]
Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu2 [61.7 kB]
Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2ubuntu6 [243 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libffi8 arm64 3.4.6-1build1 [22.7 kB]
Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libidn2-0 arm64 2.3.7-2build1 [67.2 kB]
Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libtasn1-6 arm64 4.19.0-3build1 [43.1 kB]
Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdebconfclient0 arm64 0.271ubuntu3 [11.3 kB]
Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 base-passwd arm64 3.6.3build1 [51.1 kB]
Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libassuan0 arm64 2.5.6-1build1 [36.8 kB]
Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libsqlite3-0 arm64 3.45.1-1ubuntu2 [703 kB]
Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 gpg arm64 2.4.4-2ubuntu17 [548 kB]
Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline8t64 arm64 8.2-4build1 [153 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 readline-common all 8.2-4build1 [56.5 kB]
Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libncursesw6 arm64 6.4+20240113-1ubuntu2 [145 kB]
Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libtinfo6 arm64 6.4+20240113-1ubuntu2 [104 kB]
Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 gpg-agent arm64 2.4.4-2ubuntu17 [221 kB]
Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 gpgconf arm64 2.4.4-2ubuntu17 [103 kB]
Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 pinentry-curses arm64 1.2.1-3ubuntu5 [34.3 kB]
Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 init-system-helpers all 1.66ubuntu1 [39.4 kB]
Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libnpth0t64 arm64 1.6-3.1build1 [8144 B]
Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 gpgv arm64 2.4.4-2ubuntu17 [150 kB]
Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-keyring all 2023.11.28.1 [11.1 kB]
Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libseccomp2 arm64 2.5.5-1ubuntu3 [51.1 kB]
Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 apt-utils arm64 2.7.14build2 [205 kB]
Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 apt arm64 2.7.14build2 [1336 kB]
Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 debconf-i18n all 1.5.86ubuntu1 [205 kB]
Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 debconf all 1.5.86ubuntu1 [124 kB]
Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libpam0g arm64 1.5.3-5ubuntu5 [67.8 kB]
Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libargon2-1 arm64 0~20190702+dfsg-4build1 [20.5 kB]
Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libdevmapper1.02.1 arm64 2:1.02.185-3ubuntu3 [128 kB]
Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libjson-c5 arm64 0.17-1build1 [36.4 kB]
Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libuuid1 arm64 2.39.3-9ubuntu6 [35.4 kB]
Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libfdisk1 arm64 2.39.3-9ubuntu6 [142 kB]
Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 mount arm64 2.39.3-9ubuntu6 [116 kB]
Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libcom-err2 arm64 1.47.0-2.4~exp1ubuntu4 [22.4 kB]
Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libkeyutils1 arm64 1.6.3-3build1 [9654 B]
Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-31.31 [1572 kB]
Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 base-files arm64 13ubuntu10 [73.8 kB]
Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.17build1 [90.2 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu4 [780 kB]
Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 bsdutils arm64 1:2.39.3-9ubuntu6 [97.7 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 coreutils arm64 9.4-3ubuntu6 [1363 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 tar arm64 1.35+dfsg-3build1 [248 kB]
Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg arm64 1.22.6ubuntu6 [1265 kB]
Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 dash arm64 0.5.12-6ubuntu5 [90.4 kB]
Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 diffutils arm64 1:3.10-1build1 [175 kB]
Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 findutils arm64 4.9.0-5build1 [300 kB]
Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 grep arm64 3.11-4build1 [159 kB]
Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 gzip arm64 1.12-1ubuntu3 [97.2 kB]
Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 hostname arm64 3.23+nmu2ubuntu2 [11.0 kB]
Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 login arm64 1:4.13+dfsg1-4ubuntu3 [200 kB]
Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-bin arm64 6.4+20240113-1ubuntu2 [186 kB]
Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 sed arm64 4.9-2build1 [191 kB]
Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 util-linux arm64 2.39.3-9ubuntu6 [1114 kB]
Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB]
Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 sysvinit-utils arm64 3.08-6ubuntu3 [33.8 kB]
Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 logsave arm64 1.47.0-2.4~exp1ubuntu4 [22.2 kB]
Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libext2fs2t64 arm64 1.47.0-2.4~exp1ubuntu4 [225 kB]
Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 e2fsprogs arm64 1.47.0-2.4~exp1ubuntu4 [594 kB]
Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 optipng arm64 0.7.8+ds-1build2 [109 kB]
Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpng16-16t64 arm64 1.6.43-5build1 [185 kB]
Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 init arm64 1.66ubuntu1 [6186 B]
Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libsmartcols1 arm64 2.39.3-9ubuntu6 [64.4 kB]
Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-runtime arm64 2.39.3-9ubuntu6 [32.5 kB]
Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libattr1 arm64 1:2.5.2-1build1 [11.0 kB]
Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libmd0 arm64 1.1.0-2build1 [24.6 kB]
Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB]
Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage-common all 3.5-1build5 [10.1 kB]
Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libsepol2 arm64 3.5-2build1 [291 kB]
Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage2 arm64 3.5-1build5 [90.8 kB]
Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 passwd arm64 1:4.13+dfsg1-4ubuntu3 [839 kB]
Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-4ubuntu3 [58.5 kB]
Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libss2 arm64 1.47.0-2.4~exp1ubuntu4 [16.5 kB]
Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 mawk arm64 1.3.4.20240123-1build1 [124 kB]
Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-4ubuntu3 [708 kB]
Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 sensible-utils all 0.0.22 [22.5 kB]
Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates all 20240203 [159 kB]
Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB]
Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 tzdata all 2024a-2ubuntu1 [273 kB]
Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 bash-completion all 1:2.11-8 [180 kB]
Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 bsdextrautils arm64 2.39.3-9ubuntu6 [71.5 kB]
Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libgpm2 arm64 1.20.7-11 [14.7 kB]
Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libip4tc2 arm64 1.8.10-3ubuntu2 [23.4 kB]
Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libjansson4 arm64 2.14-2build2 [34.4 kB]
Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 psmisc arm64 23.7-1build1 [178 kB]
Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 xz-utils arm64 5.6.1+really5.4.5-1 [268 kB]
Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 advancecomp arm64 2.5-1build1 [177 kB]
Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libgprofng0 arm64 2.42-4ubuntu2 [777 kB]
Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libctf0 arm64 2.42-4ubuntu2 [95.7 kB]
Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libctf-nobfd0 arm64 2.42-4ubuntu2 [99.8 kB]
Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-aarch64-linux-gnu arm64 2.42-4ubuntu2 [3291 kB]
Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libbinutils arm64 2.42-4ubuntu2 [767 kB]
Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 binutils arm64 2.42-4ubuntu2 [18.1 kB]
Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-common arm64 2.42-4ubuntu2 [239 kB]
Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 libsframe1 arm64 2.42-4ubuntu2 [14.4 kB]
Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240412-0ubuntu1 [1155 kB]
Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-23ubuntu4 [14.5 kB]
Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB]
Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240412-0ubuntu1 [144 kB]
Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240412-0ubuntu1 [27.9 kB]
Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240412-0ubuntu1 [11.4 kB]
Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240412-0ubuntu1 [2921 kB]
Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240412-0ubuntu1 [1286 kB]
Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240412-0ubuntu1 [1604 kB]
Get:172 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-23ubuntu4 [472 kB]
Get:173 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB]
Get:174 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240412-0ubuntu1 [2692 kB]
Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240412-0ubuntu1 [44.7 kB]
Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-23ubuntu4 [1032 B]
Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-base arm64 13.2.0-23ubuntu4 [49.0 kB]
Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3build1 [669 kB]
Get:179 http://ftpmaster.internal/ubuntu noble/main arm64 libmpfr6 arm64 4.2.1-1build1 [329 kB]
Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB]
Get:181 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [20.1 MB]
Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [11.7 MB]
Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.3 MB]
Get:184 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
Get:186 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
Get:187 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
Get:188 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
Get:189 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.6ubuntu6 [1074 kB]
Get:191 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.6ubuntu6 [268 kB]
Get:192 http://ftpmaster.internal/ubuntu noble/main arm64 patch arm64 2.7.6-7build3 [101 kB]
Get:193 http://ftpmaster.internal/ubuntu noble/main arm64 make arm64 4.3-4.1build2 [178 kB]
Get:194 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 47 [12.4 kB]
Get:195 http://ftpmaster.internal/ubuntu noble/main arm64 libfakeroot arm64 1.33-1 [32.5 kB]
Get:196 http://ftpmaster.internal/ubuntu noble/main arm64 fakeroot arm64 1.33-1 [66.9 kB]
Get:197 http://ftpmaster.internal/ubuntu noble/main arm64 liblockfile-bin arm64 1.17-1build3 [11.0 kB]
Get:198 http://ftpmaster.internal/ubuntu noble/main arm64 liblockfile1 arm64 1.17-1build3 [6874 B]
Get:199 http://ftpmaster.internal/ubuntu noble/main arm64 lockfile-progs arm64 0.1.19build2 [8440 B]
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dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested:
 libperl5.36:arm64 depends on libdb5.3.
 libpam-modules:arm64 depends on libdb5.3.
 apt-utils depends on libdb5.3.

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dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested:
 libperl5.36:arm64 depends on libgdbm6 (>= 1.21).
 libgdbm-compat4:arm64 depends on libgdbm6 (>= 1.16).

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dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested:
 libperl5.36:arm64 depends on libgdbm-compat4 (>= 1.18-3).

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dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
 systemd depends on libssl3 (>= 3.0.0).

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dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty
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dpkg: warning: unable to delete old directory '/lib/aarch64-linux-gnu/security': Directory not empty
Setting up libpam-modules:arm64 (1.5.3-5ubuntu5) ...
Installing new version of config file /etc/security/namespace.init ...
dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested:
 libgnutls30:arm64 depends on libhogweed6 (>= 3.6).

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dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested:
 libgnutls30:arm64 depends on libnettle8 (>= 3.7~).

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Current default time zone: 'Etc/UTC'
Local time is now:      Sun May 12 12:56:02 UTC 2024.
Universal Time is now:  Sun May 12 12:56:02 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Updating certificates in /etc/ssl/certs...
rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL
14 added, 5 removed; done.
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Setting up gcc-13 (13.2.0-23ubuntu4) ...
Setting up cpp (4:13.2.0-7ubuntu1) ...
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Setting up g++-13 (13.2.0-23ubuntu4) ...
Setting up libnss-nisplus:arm64 (1.3-5build1) ...
Setting up gcc (4:13.2.0-7ubuntu1) ...
Setting up libnss-nis:arm64 (3.1-0ubuntu7) ...
Setting up libnsl-dev:arm64 (1.3.0-3build3) ...
Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
Setting up g++ (4:13.2.0-7ubuntu1) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...
Processing triggers for debianutils (5.17build1) ...
(Reading database ... 15845 files and directories currently installed.)
Purging configuration files for libssl3:arm64 (3.0.10-1ubuntu2) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28158968 arm64 noble -c chroot:build-PACKAGEBUILD-28158968 --arch=arm64 --dist=noble --nolog apbs_3.4.1-5.1ubuntu2.dsc
Initiating build PACKAGEBUILD-28158968 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 5.4.0-181-generic #201-Ubuntu SMP Thu Mar 28 15:39:18 UTC 2024 aarch64
sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-arm64-028.buildd

+==============================================================================+
| apbs 3.4.1-5.1ubuntu2 (arm64)                Sun, 12 May 2024 12:56:11 +0000 |
+==============================================================================+

Package: apbs
Version: 3.4.1-5.1ubuntu2
Source Version: 3.4.1-5.1ubuntu2
Distribution: noble
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any

I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28158968/chroot-autobuild' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/apbs-ffTR76/resolver-mVaO8U' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

apbs_3.4.1-5.1ubuntu2.dsc exists in .; copying to chroot
I: NOTICE: Log filtering will replace 'build/apbs-ffTR76/apbs-3.4.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/apbs-ffTR76' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, pkg-config, libarpack2-dev, libmaloc-dev, libsuitesparse-dev, libsuperlu-dev, libtirpc-dev, mpi-default-dev, python3, python3-dev, python3-pybind11, python3-setuptools, python3-sphinx | sphinx, swig, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, pkg-config, libarpack2-dev, libmaloc-dev, libsuitesparse-dev, libsuperlu-dev, libtirpc-dev, mpi-default-dev, python3, python3-dev, python3-pybind11, python3-setuptools, python3-sphinx | sphinx, swig, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [507 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [587 B]
Fetched 2051 B in 0s (81.3 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n
  libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis
  libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl
  libtext-wrapi18n-perl libunistring2 perl-modules-5.36 psmisc uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
  dwz file gettext gettext-base gfortran-13 gfortran-13-aarch64-linux-gnu
  groff-base ibverbs-providers intltool-debian libamd3 libarchive-zip-perl
  libarchive13t64 libarpack2-dev libarpack2t64 libblas-dev libblas3 libbrotli1
  libbsd0 libbtf2 libcamd3 libcbor0.10 libccolamd3 libcholmod5 libcolamd3
  libcurl4t64 libcxsparse4 libdebhelper-perl libdw1t64 libedit2 libelf1t64
  libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev
  libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64
  libexpat1 libexpat1-dev libfabric1 libfido2-1
  libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5
  libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu74
  libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl
  libjsoncpp25 libklu2 liblapack-dev liblapack3 libldap2 libldl3 libltdl-dev
  libltdl7 libmagic-mgc libmagic1t64 libmaloc-dev libmaloc1 libmunge2
  libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
  libnuma-dev libnuma1 libopenmpi-dev libopenmpi3t64 libparu0 libpciaccess0
  libpipeline1 libpkgconf3 libpmix-dev libpmix2t64 libpsl5t64 libpython3-dev
  libpython3-stdlib libpython3.12-dev libpython3.12-minimal
  libpython3.12-stdlib libpython3.12t64 librbio4 librdmacm1t64 librhash0
  librtmp1 libsasl2-2 libsasl2-modules-db libspex2 libspqr4 libssh-4
  libsub-override-perl libsuitesparse-dev libsuitesparse-mongoose3
  libsuitesparseconfig7 libsuperlu-dev libsuperlu6 libtool libuchardet0
  libucx0 libumfpack6 libuv1t64 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxext6 libxml2 libxnvctrl0 m4 man-db media-types mpi-default-dev netbase
  ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
  pkgconf pkgconf-bin po-debconf pybind11-dev pybuild-plugin-pyproject
  python-babel-localedata python3 python3-alabaster python3-babel
  python3-build python3-certifi python3-chardet python3-dev python3-docutils
  python3-idna python3-imagesize python3-installer python3-jinja2
  python3-markupsafe python3-minimal python3-packaging python3-pkg-resources
  python3-pybind11 python3-pygments python3-pyproject-hooks python3-requests
  python3-roman python3-setuptools python3-snowballstemmer python3-sphinx
  python3-toml python3-tz python3-urllib3 python3-wheel python3.12
  python3.12-dev python3.12-minimal sgml-base sphinx-common swig xml-core
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
  elpa-cmake-mode ninja-build dh-make flit gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-13-doc libcoarrays-dev groff lrzip liblapack-doc
  libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils libsuperlu-doc gcj-jdk
  m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler
  keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl pybind11-doc
  python3-doc python3-tk python3-venv python3-pip python-build-doc
  docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
  texlive-latex-base texlive-latex-recommended python-installer-doc
  python-jinja2-doc python-pygments-doc ttf-bitstream-vera
  python3-cryptography python3-openssl python3-socks python-requests-doc
  python-setuptools-doc python3-stemmer dvipng fonts-freefont-otf
  imagemagick-6.q16 latexmk libjs-mathjax python3-lib2to3
  python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended
  texlive-latex-extra texlive-plain-generic python3-brotli python3.12-venv
  python3.12-doc binfmt-support sgml-base-doc swig-doc swig-examples
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl javascript-common libjson-xs-perl
  libldap-common libcoarrays-openmpi-dev publicsuffix libsasl2-modules
  libgraphblas-dev xauth libmail-sendmail-perl libeigen3-dev libpaper-utils
  python3-pil python3-numpy
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
  dwz file gettext gettext-base gfortran-13 gfortran-13-aarch64-linux-gnu
  groff-base ibverbs-providers intltool-debian libamd3 libarchive-zip-perl
  libarchive13t64 libarpack2-dev libarpack2t64 libblas-dev libblas3 libbrotli1
  libbsd0 libbtf2 libcamd3 libcbor0.10 libccolamd3 libcholmod5 libcolamd3
  libcurl4t64 libcxsparse4 libdebhelper-perl libdw1t64 libedit2 libelf1t64
  libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev
  libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64
  libexpat1 libexpat1-dev libfabric1 libfido2-1
  libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5
  libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu74
  libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl
  libjsoncpp25 libklu2 liblapack-dev liblapack3 libldap2 libldl3 libltdl-dev
  libltdl7 libmagic-mgc libmagic1t64 libmaloc-dev libmaloc1 libmunge2
  libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
  libnuma-dev libnuma1 libopenmpi-dev libopenmpi3t64 libparu0 libpciaccess0
  libpipeline1 libpkgconf3 libpmix-dev libpmix2t64 libpsl5t64 libpython3-dev
  libpython3-stdlib libpython3.12-dev libpython3.12-minimal
  libpython3.12-stdlib libpython3.12t64 librbio4 librdmacm1t64 librhash0
  librtmp1 libsasl2-2 libsasl2-modules-db libspex2 libspqr4 libssh-4
  libsub-override-perl libsuitesparse-dev libsuitesparse-mongoose3
  libsuitesparseconfig7 libsuperlu-dev libsuperlu6 libtool libuchardet0
  libucx0 libumfpack6 libuv1t64 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxext6 libxml2 libxnvctrl0 m4 man-db media-types mpi-default-dev netbase
  ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
  pkgconf pkgconf-bin po-debconf pybind11-dev pybuild-plugin-pyproject
  python-babel-localedata python3 python3-alabaster python3-babel
  python3-build python3-certifi python3-chardet python3-dev python3-docutils
  python3-idna python3-imagesize python3-installer python3-jinja2
  python3-markupsafe python3-minimal python3-packaging python3-pkg-resources
  python3-pybind11 python3-pygments python3-pyproject-hooks python3-requests
  python3-roman python3-setuptools python3-snowballstemmer python3-sphinx
  python3-toml python3-tz python3-urllib3 python3-wheel python3.12
  python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy sgml-base
  sphinx-common swig xml-core zlib1g-dev
0 upgraded, 182 newly installed, 0 to remove and 0 not upgraded.
Need to get 98.6 MB of archives.
After this operation, 401 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [808 B]
Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-minimal arm64 3.12.3-1 [829 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1 arm64 2.6.1-2build1 [76.1 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-minimal arm64 3.12.3-1 [2251 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3-minimal arm64 3.12.3-0ubuntu1 [27.2 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 media-types all 10.1.0 [27.5 kB]
Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 netbase all 6.4 [13.1 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-stdlib arm64 3.12.3-1 [2036 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12 arm64 3.12.3-1 [651 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-stdlib arm64 3.12.3-0ubuntu1 [9896 B]
Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 python3 arm64 3.12.3-0ubuntu1 [24.1 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB]
Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libbsd0 arm64 0.12.1-1build1 [40.9 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libelf1t64 arm64 0.190-1.1build4 [58.0 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libicu74 arm64 74.2-1ubuntu3 [10.8 MB]
Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxml2 arm64 2.9.14+dfsg-1.3ubuntu3 [735 kB]
Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pygments all 2.17.2+dfsg-1 [819 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic-mgc arm64 1:5.45-3build1 [307 kB]
Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic1t64 arm64 1:5.45-3build1 [85.7 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 file arm64 1:5.45-3build1 [22.0 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 gettext-base arm64 0.21-14ubuntu2 [37.6 kB]
Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libuchardet0 arm64 0.0.8-1build1 [75.4 kB]
Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 groff-base arm64 1.23.0-3build2 [993 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-200 arm64 3.7.0-0.3build1 [57.5 kB]
Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-200 arm64 3.7.0-0.3build1 [183 kB]
Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs1 arm64 50.0-2build2 [67.3 kB]
Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 ibverbs-providers arm64 50.0-2build2 [367 kB]
Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libcbor0.10 arm64 0.10.2-1.2ubuntu2 [26.0 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libedit2 arm64 3.1-20230828-1build1 [97.5 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libfido2-1 arm64 1.14.0-1build3 [82.5 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libnghttp2-14 arm64 1.59.0-1build4 [74.1 kB]
Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma1 arm64 2.0.18-1build1 [23.6 kB]
Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpipeline1 arm64 1.5.7-2 [23.7 kB]
Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpsl5t64 arm64 0.21.2-1.1build1 [57.4 kB]
Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libuv1t64 arm64 1.48.0-1.1build1 [95.3 kB]
Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libxau6 arm64 1:1.0.9-1build6 [7264 B]
Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu6 [10.4 kB]
Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb1 arm64 1.15-1ubuntu2 [49.4 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-data all 2:1.8.7-1build1 [115 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-6 arm64 2:1.8.7-1build1 [649 kB]
Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxext6 arm64 2:1.3.4-1build2 [30.4 kB]
Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 man-db arm64 2.12.0-4build2 [1232 kB]
Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 openssh-client arm64 1:9.6p1-3ubuntu13 [884 kB]
Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4build1 [240 kB]
Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB]
Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 autopoint all 0.21-14ubuntu2 [422 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive13t64 arm64 3.7.2-2 [376 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libbrotli1 arm64 1.1.0-2build2 [339 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-5ubuntu3 [21.4 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-5ubuntu3 [54.7 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libldap2 arm64 2.6.7+dfsg-1~exp1ubuntu8 [193 kB]
Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build7 [57.8 kB]
Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libssh-4 arm64 0.10.6-2build2 [189 kB]
Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu10 [333 kB]
Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6build1 [78.2 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 librhash0 arm64 1.4.3-3build1 [126 kB]
Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 cmake-data all 3.28.3-1build7 [2155 kB]
Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 cmake arm64 3.28.3-1build7 [10.3 MB]
Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB]
Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libtool all 2.4.7-7build1 [166 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 dh-autoreconf all 20 [16.1 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB]
Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB]
Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B]
Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1t64 arm64 0.190-1.1build4 [258 kB]
Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5build2 [45.3 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1build6 [113 kB]
Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 gettext arm64 0.21-14ubuntu2 [845 kB]
Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.14.1ubuntu5 [869 kB]
Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 dh-python all 6.20240401 [110 kB]
Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB]
Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 docutils-common all 0.20.1+dfsg-3 [132 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240412-0ubuntu1 [444 kB]
Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-23ubuntu4 [478 kB]
Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.8 MB]
Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-23ubuntu4 [11.7 kB]
Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libsuitesparseconfig7 arm64 1:7.6.1+dfsg-1build1 [12.5 kB]
Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd3 arm64 1:7.6.1+dfsg-1build1 [25.7 kB]
Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2t64 arm64 3.9.1-1.1build2 [90.6 kB]
Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3build1 [111 kB]
Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3build1 [4293 kB]
Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2-dev arm64 3.9.1-1.1build2 [105 kB]
Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libbtf2 arm64 1:7.6.1+dfsg-1build1 [13.1 kB]
Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libcamd3 arm64 1:7.6.1+dfsg-1build1 [22.1 kB]
Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libccolamd3 arm64 1:7.6.1+dfsg-1build1 [25.2 kB]
Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libcolamd3 arm64 1:7.6.1+dfsg-1build1 [18.1 kB]
Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libcholmod5 arm64 1:7.6.1+dfsg-1build1 [582 kB]
Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libcxsparse4 arm64 1:7.6.1+dfsg-1build1 [70.7 kB]
Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-9ubuntu2 [140 kB]
Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-9ubuntu2 [90.3 kB]
Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-9ubuntu2 [62.1 kB]
Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-9ubuntu2 [7932 B]
Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-9ubuntu2 [14.7 kB]
Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-dev arm64 2.1.12-stable-9ubuntu2 [283 kB]
Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1-dev arm64 2.6.1-2build1 [128 kB]
Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2build2 [70.6 kB]
Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build2 [541 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1build1 [159 kB]
Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-6 [149 kB]
Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libjson-perl all 4.10000-1 [81.9 kB]
Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libklu2 arm64 1:7.6.1+dfsg-1build1 [72.3 kB]
Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libldl3 arm64 1:7.6.1+dfsg-1build1 [12.9 kB]
Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB]
Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl-dev arm64 2.4.7-7build1 [170 kB]
Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaloc1 arm64 1.5-1build2 [88.3 kB]
Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaloc-dev arm64 1.5-1build2 [120 kB]
Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-dev arm64 3.7.0-0.3build1 [105 kB]
Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-dev arm64 3.7.0-0.3build1 [225 kB]
Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB]
Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB]
Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB]
Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB]
Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1build1 [15.7 kB]
Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2t64 arm64 5.0.1-4.1build1 [655 kB]
Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-5ubuntu1 [1074 kB]
Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu2 [2463 kB]
Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libumfpack6 arm64 1:7.6.1+dfsg-1build1 [234 kB]
Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libparu0 arm64 1:7.6.1+dfsg-1build1 [48.6 kB]
Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2build1 [31.2 kB]
Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma-dev arm64 2.0.18-1build1 [39.6 kB]
Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-dev arm64 2.10.0-1build1 [261 kB]
Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix-dev arm64 5.0.1-4.1build1 [4022 kB]
Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12t64 arm64 3.12.3-1 [2278 kB]
Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-dev arm64 3.12.3-1 [5532 kB]
Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-dev arm64 3.12.3-0ubuntu1 [10.2 kB]
Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 librbio4 arm64 1:7.6.1+dfsg-1build1 [25.9 kB]
Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libspex2 arm64 1:7.6.1+dfsg-1build1 [34.2 kB]
Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libspqr4 arm64 1:7.6.1+dfsg-1build1 [125 kB]
Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuitesparse-mongoose3 arm64 1:7.6.1+dfsg-1build1 [32.0 kB]
Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuitesparse-dev arm64 1:7.6.1+dfsg-1build1 [1416 kB]
Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build1 [166 kB]
Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu-dev arm64 6.0.1+dfsg1-1build1 [20.7 kB]
Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-7ubuntu2 [170 kB]
Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-7ubuntu2 [113 kB]
Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2build1 [20.5 kB]
Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2build1 [16.8 kB]
Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2build1 [7264 B]
Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pybind11-dev all 2.11.1-2 [159 kB]
Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 24.0-1 [41.1 kB]
Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyproject-hooks all 1.0.0-2 [9434 B]
Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-toml all 0.10.2-1 [16.5 kB]
Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-wheel all 0.42.0-2 [53.1 kB]
Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-build all 1.0.3-2 [27.3 kB]
Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-installer all 0.7.0+dfsg1-2 [18.1 kB]
Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 pybuild-plugin-pyproject all 6.20240401 [1726 B]
Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 python-babel-localedata all 2.10.3-3build1 [6357 kB]
Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tz all 2024.1-2 [31.4 kB]
Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 python3-babel all 2.10.3-3build1 [87.5 kB]
Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 python3-certifi all 2023.11.17-1 [165 kB]
Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 python3-chardet all 5.2.0+dfsg-1 [117 kB]
Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-dev arm64 3.12.3-1 [498 kB]
Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dev arm64 3.12.3-0ubuntu1 [26.7 kB]
Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 python3-roman all 3.3-3 [9632 B]
Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 python3-docutils all 0.20.1+dfsg-3 [393 kB]
Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 python3-idna all 3.6-2 [46.0 kB]
Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 python3-imagesize all 1.4.1-1 [6844 B]
Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 python3-markupsafe arm64 2.1.5-1build2 [12.5 kB]
Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 python3-jinja2 all 3.1.2-1ubuntu1 [107 kB]
Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pybind11 all 2.11.1-2 [167 kB]
Get:173 http://ftpmaster.internal/ubuntu noble/main arm64 python3-urllib3 all 2.0.7-1 [113 kB]
Get:174 http://ftpmaster.internal/ubuntu noble/main arm64 python3-requests all 2.31.0+dfsg-1ubuntu1 [50.7 kB]
Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 sphinx-common all 7.2.6-6 [739 kB]
Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 python3-alabaster all 0.7.12-1 [17.8 kB]
Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 python3-sphinx all 7.2.6-6 [557 kB]
Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 swig arm64 4.2.0-2ubuntu1 [1152 kB]
Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs-dev arm64 50.0-2build2 [686 kB]
Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi-dev arm64 4.1.6-7ubuntu2 [865 kB]
Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-dev arm64 1.15build1 [3154 B]
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Setting up libnghttp2-14:arm64 (1.59.0-1build4) ...
Setting up gettext-base (0.21-14ubuntu2) ...
Setting up m4 (1.4.19-4build1) ...
Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-9ubuntu2) ...
Setting up libldl3:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up file (1:5.45-3build1) ...
Setting up libelf1t64:arm64 (0.190-1.1build4) ...
Setting up python-babel-localedata (2.10.3-3build1) ...
Setting up libdw1t64:arm64 (0.190-1.1build4) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-5ubuntu3) ...
Setting up libbtf2:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:arm64 (3.12.0-3build1) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
Setting up libpkgconf3:arm64 (1.8.1-2build1) ...
Setting up libmunge2:arm64 (0.5.15-4build1) ...
Setting up libexpat1-dev:arm64 (2.6.1-2build1) ...
Setting up libx11-data (2:1.8.7-1build1) ...
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build7) ...
Setting up libhwloc15:arm64 (2.10.0-1build1) ...
Setting up autopoint (0.21-14ubuntu2) ...
Setting up libjsoncpp25:arm64 (1.9.5-6build1) ...
Setting up pkgconf-bin (1.8.1-2build1) ...
Setting up libltdl7:arm64 (2.4.7-7build1) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-5ubuntu3) ...
Setting up libssh-4:arm64 (0.10.6-2build2) ...
Setting up libgfortran5:arm64 (14-20240412-0ubuntu1) ...
Setting up autoconf (2.71-3) ...
Setting up libicu74:arm64 (74.2-1ubuntu3) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ...
Setting up libnuma1:arm64 (2.0.18-1build1) ...
Setting up dwz (0.15-1build6) ...
Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ...
Setting up librhash0:arm64 (1.4.3-3build1) ...
Setting up libuchardet0:arm64 (0.0.8-1build1) ...
Setting up libjson-perl (4.10000-1) ...
Setting up libnl-3-200:arm64 (3.7.0-0.3build1) ...
Setting up openmpi-common (4.1.6-7ubuntu2) ...
Setting up debugedit (1:5.0-5build2) ...
Setting up libsuitesparseconfig7:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up netbase (6.4) ...
Setting up sgml-base (1.31) ...
Setting up cmake-data (3.28.3-1build7) ...
Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-9ubuntu2) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libfido2-1:arm64 (1.14.0-1build3) ...
Setting up libgfortran-13-dev:arm64 (13.2.0-23ubuntu4) ...
Setting up libbsd0:arm64 (0.12.1-1build1) ...
Setting up libxml2:arm64 (2.9.14+dfsg-1.3ubuntu3) ...
Setting up libmaloc-dev (1.5-1build2) ...
Setting up libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu8) ...
Setting up libblas-dev:arm64 (3.12.0-3build1) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu6) ...
Setting up liblapack3:arm64 (3.12.0-3build1) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up libxcb1:arm64 (1.15-1ubuntu2) ...
Setting up gettext (0.21-14ubuntu2) ...
Setting up libarpack2t64:arm64 (3.9.1-1.1build2) ...
Setting up libamd3:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up libpython3.12-stdlib:arm64 (3.12.3-1) ...
Setting up libcurl4t64:arm64 (8.5.0-2ubuntu10) ...
Setting up libtool (2.4.7-7build1) ...
Setting up libcolamd3:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up libsuitesparse-mongoose3:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-9ubuntu2) ...
Setting up python3.12 (3.12.3-1) ...
Setting up libedit2:arm64 (3.1-20230828-1build1) ...
Setting up libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-9ubuntu2) ...
Setting up gfortran-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
Setting up libsuperlu6:arm64 (6.0.1+dfsg1-1build1) ...
Setting up libcamd3:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up pkgconf:arm64 (1.8.1-2build1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libnuma-dev:arm64 (2.0.18-1build1) ...
Setting up libnl-route-3-200:arm64 (3.7.0-0.3build1) ...
Setting up libpython3.12t64:arm64 (3.12.3-1) ...
Setting up dh-autoreconf (20) ...
Setting up libltdl-dev:arm64 (2.4.7-7build1) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up gfortran-13 (13.2.0-23ubuntu4) ...
Setting up librbio4:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up liblapack-dev:arm64 (3.12.0-3build1) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
Setting up pkg-config:arm64 (1.8.1-2build1) ...
Setting up libjs-sphinxdoc (7.2.6-6) ...
Setting up libevent-extra-2.1-7t64:arm64 (2.1.12-stable-9ubuntu2) ...
Setting up libccolamd3:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libnl-3-dev:arm64 (3.7.0-0.3build1) ...
Setting up groff-base (1.23.0-3build2) ...
Setting up xml-core (0.19) ...
Setting up libx11-6:arm64 (2:1.8.7-1build1) ...
Setting up libhwloc-dev:arm64 (2.10.0-1build1) ...
Setting up libsuperlu-dev:arm64 (6.0.1+dfsg1-1build1) ...
Setting up libarchive13t64:arm64 (3.7.2-2) ...
Setting up libpython3-stdlib:arm64 (3.12.3-0ubuntu1) ...
Setting up libibverbs1:arm64 (50.0-2build2) ...
Setting up libcholmod5:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up libarpack2-dev:arm64 (3.9.1-1.1build2) ...
Setting up libspex2:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up ibverbs-providers:arm64 (50.0-2build2) ...
Setting up libspqr4:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up openssh-client (1:9.6p1-3ubuntu13) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:arm64 (2:1.3.4-1build2) ...
Setting up python3 (3.12.3-0ubuntu1) ...
Setting up libpython3.12-dev:arm64 (3.12.3-1) ...
Setting up man-db (2.12.0-4build2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer.
Setting up python3-markupsafe (2.1.5-1build2) ...
Setting up python3-wheel (0.42.0-2) ...
Setting up python3-tz (2024.1-2) ...
Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ...
Setting up libnl-route-3-dev:arm64 (3.7.0-0.3build1) ...
Setting up python3-roman (3.3-3) ...
Setting up python3-jinja2 (3.1.2-1ubuntu1) ...
Setting up python3-packaging (24.0-1) ...
Setting up python3-pyproject-hooks (1.0.0-2) ...
Setting up python3-certifi (2023.11.17-1) ...
Setting up python3-snowballstemmer (2.2.0-4build1) ...
Setting up libklu2:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up sphinx-common (7.2.6-6) ...
Setting up libevent-dev (2.1.12-stable-9ubuntu2) ...
Setting up python3-idna (3.6-2) ...
Setting up python3.12-dev (3.12.3-1) ...
Setting up python3-toml (0.10.2-1) ...
Setting up python3-installer (0.7.0+dfsg1-2) ...
Setting up python3-urllib3 (2.0.7-1) ...
Setting up libumfpack6:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up cmake (3.28.3-1build7) ...
Setting up librdmacm1t64:arm64 (50.0-2build2) ...
Setting up python3-build (1.0.3-2) ...
Setting up python3-imagesize (1.4.1-1) ...
Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
Setting up libfabric1:arm64 (1.17.0-3build2) ...
Setting up libucx0:arm64 (1.16.0+ds-5ubuntu1) ...
Setting up libpython3-dev:arm64 (3.12.3-0ubuntu1) ...
Setting up python3-setuptools (68.1.2-2ubuntu1) ...
Setting up python3-babel (2.10.3-3build1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-alabaster (0.7.12-1) ...
Setting up debhelper (13.14.1ubuntu5) ...
Setting up libparu0:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up libibverbs-dev:arm64 (50.0-2build2) ...
Setting up libhwloc-plugins:arm64 (2.10.0-1build1) ...
Setting up pybind11-dev (2.11.1-2) ...
Setting up python3-pygments (2.17.2+dfsg-1) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-dev (3.12.3-0ubuntu1) ...
Setting up python3-requests (2.31.0+dfsg-1ubuntu1) ...
Setting up libpmix2t64:arm64 (5.0.1-4.1build1) ...
Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ...
Setting up libpmix-dev:arm64 (5.0.1-4.1build1) ...
Setting up openmpi-bin (4.1.6-7ubuntu2) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up python3-pybind11 (2.11.1-2) ...
Setting up dh-python (6.20240401) ...
Setting up libsuitesparse-dev:arm64 (1:7.6.1+dfsg-1build1) ...
Setting up pybuild-plugin-pyproject (6.20240401) ...
Setting up libopenmpi-dev:arm64 (4.1.6-7ubuntu2) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode
Setting up mpi-default-dev (1.15build1) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...
Processing triggers for systemd (255.4-1ubuntu8) ...
Processing triggers for sgml-base (1.31) ...
Setting up docutils-common (0.20.1+dfsg-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.20.1+dfsg-3) ...
Setting up python3-sphinx (7.2.6-6) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-181-generic #201-Ubuntu SMP Thu Mar 28 15:39:18 UTC 2024 arm64 (aarch64)
Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu4 gcc-13_13.2.0-23ubuntu4 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 linux-libc-dev_6.8.0-31.31
Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu10 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-aarch64-linux-gnu_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.28.3-1build7 cmake-data_3.28.3-1build7 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu4 cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu4 cpp-aarch64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-python_6.20240401 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 docutils-common_0.20.1+dfsg-3 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5build1 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu4 g++-13-aarch64-linux-gnu_13.2.0-23ubuntu4 g++-aarch64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu4 gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu4 gcc-13-base_13.2.0-23ubuntu4 gcc-14-base_14-20240412-0ubuntu1 gcc-aarch64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gfortran-13_13.2.0-23ubuntu4 gfortran-13-aarch64-linux-gnu_13.2.0-23ubuntu4 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 ibverbs-providers_50.0-2build2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libamd3_1:7.6.1+dfsg-1build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2 libargon2-1_0~20190702+dfsg-4build1 libarpack2-dev_3.9.1-1.1build2 libarpack2t64_3.9.1-1.1build2 libasan8_14-20240412-0ubuntu1 libassuan0_2.5.6-1build1 libatomic1_14-20240412-0ubuntu1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblas-dev_3.12.0-3build1 libblas3_3.12.0-3build1 libblkid1_2.39.3-9ubuntu6 libbrotli1_1.1.0-2build2 libbsd0_0.12.1-1build1 libbtf2_1:7.6.1+dfsg-1build1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcamd3_1:7.6.1+dfsg-1build1 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcbor0.10_0.10.2-1.2ubuntu2 libcc1-0_14-20240412-0ubuntu1 libccolamd3_1:7.6.1+dfsg-1build1 libcholmod5_1:7.6.1+dfsg-1build1 libcolamd3_1:7.6.1+dfsg-1build1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcurl4t64_8.5.0-2ubuntu10 libcxsparse4_1:7.6.1+dfsg-1build1 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build4 libedit2_3.1-20230828-1build1 libelf1t64_0.190-1.1build4 libevent-2.1-7t64_2.1.12-stable-9ubuntu2 libevent-core-2.1-7t64_2.1.12-stable-9ubuntu2 libevent-dev_2.1.12-stable-9ubuntu2 libevent-extra-2.1-7t64_2.1.12-stable-9ubuntu2 libevent-openssl-2.1-7t64_2.1.12-stable-9ubuntu2 libevent-pthreads-2.1-7t64_2.1.12-stable-9ubuntu2 libexpat1_2.6.1-2build1 libexpat1-dev_2.6.1-2build1 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfabric1_1.17.0-3build2 libfakeroot_1.33-1 libfdisk1_2.39.3-9ubuntu6 libffi8_3.4.6-1build1 libfido2-1_1.14.0-1build3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-23ubuntu4 libgcc-s1_14-20240412-0ubuntu1 libgcrypt20_1.10.3-2build1 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgfortran-13-dev_13.2.0-23ubuntu4 libgfortran5_14-20240412-0ubuntu1 libgmp10_2:6.3.0+dfsg-2ubuntu6 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240412-0ubuntu1 libgpg-error-l10n_1.47-3build2 libgpg-error0_1.47-3build2 libgpm2_1.20.7-11 libgprofng0_2.42-4ubuntu2 libgssapi-krb5-2_1.20.1-6ubuntu2 libhogweed6t64_3.9.1-2.2build1 libhwasan0_14-20240412-0ubuntu1 libhwloc-dev_2.10.0-1build1 libhwloc-plugins_2.10.0-1build1 libhwloc15_2.10.0-1build1 libibverbs-dev_50.0-2build2 libibverbs1_50.0-2build2 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libitm1_14-20240412-0ubuntu1 libjansson4_2.14-2build2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_7.2.6-6 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-c5_0.17-1build1 libjson-perl_4.10000-1 libjsoncpp25_1.9.5-6build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libklu2_1:7.6.1+dfsg-1build1 libkmod2_31+20240202-2ubuntu7 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 liblapack-dev_3.12.0-3build1 liblapack3_3.12.0-3build1 libldap2_2.6.7+dfsg-1~exp1ubuntu8 libldl3_1:7.6.1+dfsg-1build1 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 liblsan0_14-20240412-0ubuntu1 libltdl-dev_2.4.7-7build1 libltdl7_2.4.7-7build1 liblz4-1_1.9.4-1build1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmaloc-dev_1.5-1build2 libmaloc1_1.5-1build2 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu6 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libmunge2_0.5.15-4build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnghttp2-14_1.59.0-1build4 libnl-3-200_3.7.0-0.3build1 libnl-3-dev_3.7.0-0.3build1 libnl-route-3-200_3.7.0-0.3build1 libnl-route-3-dev_3.7.0-0.3build1 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu7 libnss-nisplus_1.3-5build1 libnuma-dev_2.0.18-1build1 libnuma1_2.0.18-1build1 libopenmpi-dev_4.1.6-7ubuntu2 libopenmpi3t64_4.1.6-7ubuntu2 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-5ubuntu5 libpam-modules-bin_1.5.3-5ubuntu5 libpam-runtime_1.5.3-5ubuntu5 libpam0g_1.5.3-5ubuntu5 libparu0_1:7.6.1+dfsg-1build1 libpciaccess0_0.17-3build1 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build2 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-2build1 libpmix-dev_5.0.1-4.1build1 libpmix2t64_5.0.1-4.1build1 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libpsl5t64_0.21.2-1.1build1 libpython3-dev_3.12.3-0ubuntu1 libpython3-stdlib_3.12.3-0ubuntu1 libpython3.12-dev_3.12.3-1 libpython3.12-minimal_3.12.3-1 libpython3.12-stdlib_3.12.3-1 libpython3.12t64_3.12.3-1 librbio4_1:7.6.1+dfsg-1build1 librdmacm1t64_50.0-2build2 libreadline8t64_8.2-4build1 librhash0_1.4.3-3build1 librtmp1_2.4+20151223.gitfa8646d.1-2build7 libsasl2-2_2.1.28+dfsg1-5ubuntu3 libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsmartcols1_2.39.3-9ubuntu6 libspex2_1:7.6.1+dfsg-1build1 libspqr4_1:7.6.1+dfsg-1build1 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu4 libssh-4_0.10.6-2build2 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 libsub-override-perl_0.10-1 libsuitesparse-dev_1:7.6.1+dfsg-1build1 libsuitesparse-mongoose3_1:7.6.1+dfsg-1build1 libsuitesparseconfig7_1:7.6.1+dfsg-1build1 libsuperlu-dev_6.0.1+dfsg1-1build1 libsuperlu6_6.0.1+dfsg1-1build1 libsystemd-shared_255.4-1ubuntu8 libsystemd0_255.4-1ubuntu8 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7build1 libtsan2_14-20240412-0ubuntu1 libubsan1_14-20240412-0ubuntu1 libuchardet0_0.0.8-1build1 libucx0_1.16.0+ds-5ubuntu1 libudev1_255.4-1ubuntu8 libumfpack6_1:7.6.1+dfsg-1build1 libunistring2_1.0-2 libunistring5_1.1-2build1 libuuid1_2.39.3-9ubuntu6 libuv1t64_1.48.0-1.1build1 libx11-6_2:1.8.7-1build1 libx11-data_2:1.8.7-1build1 libxau6_1:1.0.9-1build6 libxcb1_1.15-1ubuntu2 libxdmcp6_1:1.1.3-0ubuntu6 libxext6_2:1.3.4-1build2 libxml2_2.9.14+dfsg-1.3ubuntu3 libxnvctrl0_510.47.03-0ubuntu4 libxxhash0_0.8.2-2build1 libzstd1_1.5.5+dfsg2-2build1 linux-libc-dev_6.8.0-31.31 lockfile-progs_0.1.19build2 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 media-types_10.1.0 mount_2.39.3-9ubuntu6 mpi-default-dev_1.15build1 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 netbase_6.4 ocl-icd-libopencl1_2.3.2-1build1 openmpi-bin_4.1.6-7ubuntu2 openmpi-common_4.1.6-7ubuntu2 openssh-client_1:9.6p1-3ubuntu13 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkg-config_1.8.1-2build1 pkgbinarymangler_154 pkgconf_1.8.1-2build1 pkgconf-bin_1.8.1-2build1 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 pybind11-dev_2.11.1-2 pybuild-plugin-pyproject_6.20240401 python-babel-localedata_2.10.3-3build1 python3_3.12.3-0ubuntu1 python3-alabaster_0.7.12-1 python3-babel_2.10.3-3build1 python3-build_1.0.3-2 python3-certifi_2023.11.17-1 python3-chardet_5.2.0+dfsg-1 python3-dev_3.12.3-0ubuntu1 python3-docutils_0.20.1+dfsg-3 python3-idna_3.6-2 python3-imagesize_1.4.1-1 python3-installer_0.7.0+dfsg1-2 python3-jinja2_3.1.2-1ubuntu1 python3-markupsafe_2.1.5-1build2 python3-minimal_3.12.3-0ubuntu1 python3-packaging_24.0-1 python3-pkg-resources_68.1.2-2ubuntu1 python3-pybind11_2.11.1-2 python3-pygments_2.17.2+dfsg-1 python3-pyproject-hooks_1.0.0-2 python3-requests_2.31.0+dfsg-1ubuntu1 python3-roman_3.3-3 python3-setuptools_68.1.2-2ubuntu1 python3-snowballstemmer_2.2.0-4build1 python3-sphinx_7.2.6-6 python3-toml_0.10.2-1 python3-tz_2024.1-2 python3-urllib3_2.0.7-1 python3-wheel_0.42.0-2 python3.12_3.12.3-1 python3.12-dev_3.12.3-1 python3.12-minimal_3.12.3-1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 sgml-base_1.31 sphinx-common_7.2.6-6 swig_4.2.0-2ubuntu1 systemd_255.4-1ubuntu8 systemd-dev_255.4-1ubuntu8 systemd-sysv_255.4-1ubuntu8 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 xml-core_0.19 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: apbs
Binary: apbs, python3-apbslib, libapbs-dev, libapbs3t64, apbs-data, apbs-doc, libfetk-dev, libfetk1.9t64
Architecture: any all
Version: 3.4.1-5.1ubuntu2
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Uploaders: Michael Banck <mbanck@debian.org>
Homepage: http://www.poissonboltzmann.org/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/debichem-team/apbs
Vcs-Git: https://salsa.debian.org/debichem-team/apbs.git
Testsuite: autopkgtest
Testsuite-Triggers: python3
Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, pkg-config, libarpack2-dev, libmaloc-dev, libsuitesparse-dev, libsuperlu-dev, libtirpc-dev, mpi-default-dev, python3, python3-dev, python3-pybind11, python3-setuptools, python3-sphinx | sphinx, swig, zlib1g-dev
Build-Depends-Indep: libjs-mathjax, python3-sphinx-rtd-theme, python3-yaml
Package-List:
 apbs deb science optional arch=any
 apbs-data deb science optional arch=all
 apbs-doc deb science optional arch=all
 libapbs-dev deb libdevel optional arch=any
 libapbs3t64 deb libs optional arch=any
 libfetk-dev deb libdevel optional arch=any
 libfetk1.9t64 deb libs optional arch=any
 python3-apbslib deb python optional arch=any
Checksums-Sha1:
 584fd36dc1424cb22fd8846f1cf2c7ead60ce0c6 85806314 apbs_3.4.1.orig.tar.gz
 c7015e0b69d57e9d2a7064382ddda314a0235e2a 20426692 apbs_3.4.1-5.1ubuntu2.debian.tar.xz
Checksums-Sha256:
 644e6246fd37c9dd4172fc7be1763337082ab8584dbcd53e738c831b62c89bb2 85806314 apbs_3.4.1.orig.tar.gz
 d3b0ec29894c276ef5c848d3ceff119303035c99f5c00476bd31ea77fc1ad91c 20426692 apbs_3.4.1-5.1ubuntu2.debian.tar.xz
Files:
 5d2af7c3592f8c410a5df39887361520 85806314 apbs_3.4.1.orig.tar.gz
 5299f4a54dd8368c2c05f697945c773d 20426692 apbs_3.4.1-5.1ubuntu2.debian.tar.xz
Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>

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gpgv: Signature made Sun Mar 31 17:39:49 2024 UTC
gpgv:                using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
gpgv:                issuer "steve.langasek@ubuntu.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./apbs_3.4.1-5.1ubuntu2.dsc: no acceptable signature found
dpkg-source: info: extracting apbs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking apbs_3.4.1.orig.tar.gz
dpkg-source: info: unpacking apbs_3.4.1-5.1ubuntu2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying wrong-path-for-interpreter.patch
dpkg-source: info: applying debian_testfiles.patch
dpkg-source: info: applying fix_spelling_errors.patch
dpkg-source: info: applying shared_library_soname.patch
dpkg-source: info: applying python3.patch
dpkg-source: info: applying cmake.patch
dpkg-source: info: applying docs.patch
dpkg-source: info: applying open-U-obsolete.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=noautodbgsym parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28158968
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28158968
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-28158968
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon <buildd@bos01-arm64-028.buildd> -B -rfakeroot
dpkg-buildpackage: info: source package apbs
dpkg-buildpackage: info: source version 3.4.1-5.1ubuntu2
dpkg-buildpackage: info: source distribution noble
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 fakeroot debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=cmake
   dh_auto_clean -O--buildsystem=cmake
   dh_autoreconf_clean -O--buildsystem=cmake
   dh_clean -O--buildsystem=cmake
 debian/rules build-arch
dh build-arch --with python3,sphinxdoc --buildsystem=cmake
   dh_update_autotools_config -a -O--buildsystem=cmake
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
   dh_autoreconf -a -O--buildsystem=cmake
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
	-DCMAKE_BUILD_TYPE=None \
	-DAPBS_STATIC_BUILD=Off \
	-DBUILD_DOC=Off -DBUILD_TOOLS=On \
	-DENABLE_OPENMP=On -DENABLE_MPI=On \
	-DENABLE_PYTHON=On -DBUILD_SHARED_LIBS=On \
	-DENABLE_READLINE=Off -DENABLE_ZLIB=On \
	-DFETCHCONTENT_SOURCE_DIR_FETK=/<<PKGBUILDDIR>>/debian/external_deps/fetk \
	-DRPC_CFLAGS=-I/usr/include/tirpc  \
	-DBUILD_MALOC=Off
	cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=None -DAPBS_STATIC_BUILD=Off -DBUILD_DOC=Off -DBUILD_TOOLS=On -DENABLE_OPENMP=On -DENABLE_MPI=On -DENABLE_PYTHON=On -DBUILD_SHARED_LIBS=On -DENABLE_READLINE=Off -DENABLE_ZLIB=On -DFETCHCONTENT_SOURCE_DIR_FETK=/<<PKGBUILDDIR>>/debian/external_deps/fetk -DRPC_CFLAGS=-I/usr/include/tirpc -DBUILD_MALOC=Off ..
-- The C compiler identification is GNU 13.2.0
-- The CXX compiler identification is GNU 13.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Install prefix: /usr
-- 
-- APBS Static build: Off
-- Building shared libs: ON
-- Find-library suffixes: .so;.so;.a
-- 
-- Building FETK from commit 57195e55351e04ce6ee0ef56a143c996a9aee7e2
-- FETK set_basic_vars_and_paths: FALSE, FETK
-- Setting project paths
-- Install prefix: /usr
-- FETK static build: OFF
-- Building shared libs: ON
-- Find-library suffixes: .so;.so;.so;.a
Configuring build for PUNC
-- FETK set_basic_vars_and_paths: FALSE, punc
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of mode_t
-- Check size of mode_t - done
-- Check size of pid_t
-- Check size of pid_t - done
-- Check size of size_t
-- Check size of size_t - done
-- Looking for 4 include files stdlib.h, ..., float.h
-- Looking for 4 include files stdlib.h, ..., float.h - found
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file sys/socket.h
-- Looking for include file sys/socket.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file sys/un.h
-- Looking for include file sys/un.h - found
-- Looking for include file sys/wait.h
-- Looking for include file sys/wait.h - found
-- Looking for include file netinet/in.h
-- Looking for include file netinet/in.h - found
-- Looking for include file arpa/inet.h
-- Looking for include file arpa/inet.h - found
-- Looking for include file netdb.h
-- Looking for include file netdb.h - found
-- Looking for include file sys/stat.h
-- Looking for include file sys/stat.h - found
-- Looking for include file fcntl.h
-- Looking for include file fcntl.h - found
-- Looking for include file rpc/rpc.h
-- Looking for include file rpc/rpc.h - found
-- Looking for getcwd
-- Looking for getcwd - found
-- Looking for O_NONBLOCK
-- Looking for O_NONBLOCK - found
-- Will build vf2c
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so  
-- Performing Test SUPERLU_HAS_GLOBAL_MEM_USAGE_T
-- Performing Test SUPERLU_HAS_GLOBAL_MEM_USAGE_T - Success
-- Performing Test SUPERLU_HAS_CLEAN_ENUMS
-- Performing Test SUPERLU_HAS_CLEAN_ENUMS - Success
-- Performing Test SUPERLU_HAS_GLOBALLU_T
-- Performing Test SUPERLU_HAS_GLOBALLU_T - Success
-- Found SuperLU: /usr/include/superlu (found version "5.0") 
-- Found ARPACK: libraries at /usr/lib/aarch64-linux-gnu/libarpack.so
-- Will build CGCODE
-- Building vf2c
-- Type: EXTERNAL_HEADERS
-- Items: punc/varpack.h;punc/vblas.h;punc/vcgcode.h;punc/vlapack.h;punc/vpmg.h;punc/vf2c.h
-- Type: INTERNAL_HEADERS
-- Items: f2c.h;fio.h;fmt.h;fp.h;lio.h;rawio.h;signal1.h;sysdep1.h
-- Type: SOURCES
-- Items: f77vers.c;i77vers.c;s_rnge.c;abort_.c;exit_.c;getarg_.c;iargc_.c;getenv_.c;signal_.c;s_stop.c;s_paus.c;system_.c;cabs.c;derf_.c;derfc_.c;erf_.c;erfc_.c;sig_die.c;uninit.c;pow_ci.c;pow_dd.c;pow_di.c;pow_hh.c;pow_ii.c;pow_ri.c;pow_zi.c;pow_zz.c;c_abs.c;c_cos.c;c_div.c;c_exp.c;c_log.c;c_sin.c;c_sqrt.c;z_abs.c;z_cos.c;z_div.c;z_exp.c;z_log.c;z_sin.c;z_sqrt.c;r_abs.c;r_acos.c;r_asin.c;r_atan.c;r_atn2.c;r_cnjg.c;r_cos.c;r_cosh.c;r_dim.c;r_exp.c;r_imag.c;r_int.c;r_lg10.c;r_log.c;r_mod.c;r_nint.c;r_sign.c;r_sin.c;r_sinh.c;r_sqrt.c;r_tan.c;r_tanh.c;d_abs.c;d_acos.c;d_asin.c;d_atan.c;d_atn2.c;d_cnjg.c;d_cos.c;d_cosh.c;d_dim.c;d_exp.c;d_imag.c;d_int.c;d_lg10.c;d_log.c;d_mod.c;d_nint.c;d_prod.c;d_sign.c;d_sin.c;d_sinh.c;d_sqrt.c;d_tan.c;d_tanh.c;i_abs.c;i_dim.c;i_dnnt.c;i_indx.c;i_len.c;i_mod.c;i_nint.c;i_sign.c;lbitbits.c;lbitshft.c;h_abs.c;h_dim.c;h_dnnt.c;h_indx.c;h_len.c;h_mod.c;h_nint.c;h_sign.c;l_ge.c;l_gt.c;l_le.c;l_lt.c;hl_ge.c;hl_gt.c;hl_le.c;hl_lt.c;ef1asc_.c;ef1cmc_.c;f77_aloc.c;s_cat.c;s_cmp.c;s_copy.c;dtime_.c;etime_.c;backspac.c;close.c;dfe.c;dolio.c;due.c;endfile.c;err.c;fmt.c;fmtlib.c;ftell_.c;iio.c;ilnw.c;inquire.c;lread.c;lwrite.c;open.c;rdfmt.c;rewind.c;rsfe.c;rsli.c;rsne.c;sfe.c;sue.c;typesize.c;uio.c;util.c;wref.c;wrtfmt.c;wsfe.c;wsle.c;wsne.c;xwsne.c;main.c
-- Building cgcode
-- Type: INTERNAL_HEADERS
-- Items: vcgcode.h
-- Type: SOURCES
-- Items: scgdrv.c;scg.c;scr.c;scrind.c;spcg.c;scgnr.c;scgne.c;spcgnr.c;spcgne.c;sppcg.c;spcgca.c;sdpchb.c;scbfix.c;sckchb.c;scgchk.c;sonest.c;msstop.c;r1mach.c;sratqr.c;dcgdrv.c;dcg.c;dcr.c;dcrind.c;dpcg.c;dcgnr.c;dcgne.c;dpcgnr.c;dpcgne.c;dppcg.c;dpcgca.c;ddpchb.c;dcbfix.c;dckchb.c;dcgchk.c;donest.c;mdstop.c;d1mach.c;dratqr.c;depsln.c
-- Type: INTERNAL_HEADERS
-- Items: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/punccf.h
-- Type: SOURCES
-- Items: punc_base.c
-- Type: EXTERNAL_HEADERS
-- Items: punc/punc.h;punc/punc_base.h
-- Type: INTERNAL_HEADERS
-- Items: punc_base_p.h
Configuring build for GAMER
-- FETK set_basic_vars_and_paths: FALSE, gamer
-- Type: INTERNAL_HEADERS
-- Items: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src/gamercf.h
-- Type: SOURCES
-- Items: gamer_base.c
-- Type: EXTERNAL_HEADERS
-- Items: gamer/gamer.h;gamer/gamer_base.h
-- Type: INTERNAL_HEADERS
-- Items: gamer_base_p.h
-- Type: SOURCES
-- Items: triangle.c
-- Type: EXTERNAL_HEADERS
-- Items: gamer/triangle.h
-- Type: INTERNAL_HEADERS
-- Items: triangle_p.h
-- Type: SOURCES
-- Items: predicates.cpp;tetgen.cpp
-- Type: EXTERNAL_HEADERS
-- Items: gamer/tetgen.h
-- Type: INTERNAL_HEADERS
-- Items: tetgen_p.h
-- Type: SOURCES
-- Items: CorrectNormals.C;GenerateSphereMesh.C;MarchingCube.C;PDB2Mesh.C;PDB2Volume.C;ReadLattice.C;ReadPDB.C;ReadWriteMesh.C;RegionGrowing.C;SurfaceMesh.C;SurfExtract.C;SurfRefine.C;SurfSmooth.C
-- Type: EXTERNAL_HEADERS
-- Items: gamer/biom.h
-- Type: INTERNAL_HEADERS
-- Items: MarchingCube.h;PDB2Volume.h
Configuring build for MC
-- FETK set_basic_vars_and_paths: FALSE, mc
-- Found UMFPACK: /usr/include/suitesparse  
-- @@@@ finding blas
-- @@@@ finding lapack
-- %%%%% list of libraries: 
-- Testing libraries: TRUE
--     CMAKE_REQUIRED_LIBRARIES: /usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl
-- checking for function cheev_
--     result: TRUE
-- Found LAPACK: /usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl  
-- @@@@ finding amd
-- Found AMD headers in: /usr/include/suitesparse
-- Found AMD library: /usr/lib/aarch64-linux-gnu/libamd.so
-- @@@@ finding camd
-- Found CAMD headers in: /usr/include/suitesparse
-- Found CAMD library: /usr/lib/aarch64-linux-gnu/libcamd.so
-- @@@@ finding colamd
-- Found COLAMD headers in: /usr/include/suitesparse
-- Found COLAMD library: /usr/lib/aarch64-linux-gnu/libcolamd.so
-- @@@@ finding ccolamd
-- Found CCOLAMD headers in: /usr/include/suitesparse
-- Found CCOLAMD library: /usr/lib/aarch64-linux-gnu/libccolamd.so
-- @@@@ finding cholmod
-- Found CHOLMOD headers in: /usr/include/suitesparse
-- Found CHOLMOD library: /usr/lib/aarch64-linux-gnu/libcholmod.so
-- @@@@ finding parseqr
-- Found SUITESPARSEQR headers in: /usr/include/suitesparse
-- Found SUITESPARSEQR library: /usr/lib/aarch64-linux-gnu/libspqr.so
-- Did not find Intel TBB library, assuming SuiteSparseQR was not compiled with TBB.
-- @@@@ finding config
-- Found SUITESPARSE_CONFIG headers in: /usr/include/suitesparse
-- Found SUITESPARSE_CONFIG library: /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so
-- Found LIBRT library: /usr/lib/aarch64-linux-gnu/librt.a
-- Adding librt: /usr/lib/aarch64-linux-gnu/librt.a to SuiteSparse_config libraries (required on Linux & Unix [not OSX] if SuiteSparse is compiled with timing).
-- @@@@ finding metis
-- Did not find METIS library (optional SuiteSparse dependency)
-- Found SuiteSparse: TRUE (found version "..") 
-- Type: INTERNAL_HEADERS
-- Items: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src/mccf.h
-- Type: SOURCES
-- Items: mc_base.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/mc_base.h;mc/mc.h
-- Type: INTERNAL_HEADERS
-- Items: mc_base_p.h
-- Type: SOURCES
-- Items: bmat.c;bsolv.c;bvec.c;mat.c;matcopy.c;matln.c;mtool.c;slu.c;vec.c;vec3.c;zslu.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/bam.h;mc/bmat.h;mc/bvec.h;mc/mat.h;mc/mtool.h;mc/slu.h;mc/vec.h;mc/vec3.h;mc/zslu.h
-- Type: INTERNAL_HEADERS
-- Items: bam_p.h;bmat_p.h;bvec_p.h;mat_p.h;mtool_p.h;slu_p.h;vec_p.h;vec3_p.h;zslu_p.h
-- Type: SOURCES
-- Items: whb.c;bvechb.c;hbtools.c;rcmat.c;brcmat.c;subopt.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/whb.h
-- Type: INTERNAL_HEADERS
-- Items: brcmat_p.h;bvechb_p.h;cholesky_p.h;hbtools_p.h;rcmat_p.h;subopt_p.h;whb_p.h
-- Type: SOURCES
-- Items: aprx.c;assem.c;bnode.c;estim.c;eval.c;io.c;node.c;parti.c;re.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/aprx.h;mc/bnode.h;mc/node.h;mc/re.h
-- Type: INTERNAL_HEADERS
-- Items: aprx_p.h;bnode_p.h;node_p.h;re_p.h
-- Type: SOURCES
-- Items: vel.c;ves.c;gem.c;gemchk.c;gemdisp.c;gemg.c;gemgen.c;gemio.c;gemref.c;gemunref.c;gemcube.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/gem.h;mc/vel.h;mc/ves.h
-- Type: INTERNAL_HEADERS
-- Items: gem_p.h;vel_p.h;ves_p.h
-- Type: SOURCES
-- Items: pde.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/pde.h
-- Type: INTERNAL_HEADERS
-- Items: pde_p.h
-- Type: SOURCES
-- Items: am.c;lsolv.c;nsolv.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/am.h;mc/nam.h
-- Type: INTERNAL_HEADERS
-- Items: am_p.h;nam_p.h
-- Type: SOURCES
-- Items: dyn.c;svio.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/dyn.h
-- Type: INTERNAL_HEADERS
-- Items: dyn_p.h;svio_p.h
-- Type: SOURCES
-- Items: mcsh.c
-- Type: EXTERNAL_HEADERS
-- Items: mc/mcsh.h
-- Type: INTERNAL_HEADERS
-- Items: mcsh_p.h
-- #############################################################
-- ** PROJECT NAME:  APBS
-- ** PROJECT DESC:  Adaptive Poisson-Boltzmann Solver
-- ** PROJECT URL:   http://www.poissonboltzmann.org/
-- ** VERSION_DATA:  3.4.1
-- ** CURRENT_TIME:  2024-03-31T17:39:33
-- ** CURRENT_YEAR:  2024
-- Setting project paths
-- Setting lookup paths for headers and libraries
-- Computing machine epsilon values
-- Floating point epsilon is 2.220446e-16
-- Double precision epsilon is 2.220446e-16
-- Looking for time
-- Looking for time - found
-- Looking for rand
-- Looking for rand - found
-- Looking for srand
-- Looking for srand - found
-- Found Intl: built in to C library  
-- Performing Test Iconv_IS_BUILT_IN
-- Performing Test Iconv_IS_BUILT_IN - Success
-- Found Iconv: built in to C library  
-- @@@@ finding blas
-- @@@@ finding lapack
-- %%%%% list of libraries: 
-- Testing libraries: TRUE
--     CMAKE_REQUIRED_LIBRARIES: /usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl
-- checking for function cheev_
--     result: TRUE
-- @@@@ finding amd
-- Found AMD headers in: /usr/include/suitesparse
-- Found AMD library: /usr/lib/aarch64-linux-gnu/libamd.so
-- @@@@ finding camd
-- Found CAMD headers in: /usr/include/suitesparse
-- Found CAMD library: /usr/lib/aarch64-linux-gnu/libcamd.so
-- @@@@ finding colamd
-- Found COLAMD headers in: /usr/include/suitesparse
-- Found COLAMD library: /usr/lib/aarch64-linux-gnu/libcolamd.so
-- @@@@ finding ccolamd
-- Found CCOLAMD headers in: /usr/include/suitesparse
-- Found CCOLAMD library: /usr/lib/aarch64-linux-gnu/libccolamd.so
-- @@@@ finding cholmod
-- Found CHOLMOD headers in: /usr/include/suitesparse
-- Found CHOLMOD library: /usr/lib/aarch64-linux-gnu/libcholmod.so
-- @@@@ finding parseqr
-- Found SUITESPARSEQR headers in: /usr/include/suitesparse
-- Found SUITESPARSEQR library: /usr/lib/aarch64-linux-gnu/libspqr.so
-- Did not find Intel TBB library, assuming SuiteSparseQR was not compiled with TBB.
-- @@@@ finding config
-- Found SUITESPARSE_CONFIG headers in: /usr/include/suitesparse
-- Found SUITESPARSE_CONFIG library: /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so
-- Found LIBRT library: /usr/lib/aarch64-linux-gnu/librt.a
-- Adding librt: /usr/lib/aarch64-linux-gnu/librt.a to SuiteSparse_config libraries (required on Linux & Unix [not OSX] if SuiteSparse is compiled with timing).
-- @@@@ finding metis
-- Did not find METIS library (optional SuiteSparse dependency)
-- UMFPack libraries: /usr/lib/aarch64-linux-gnu/libumfpack.so
-- SUITESPARSE_INCLUDE_DIRS: /usr/include/suitesparse
-- SUITESPARSE_LIBRARIES: /usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a
-- Checking for MPI
-- Found MPI_C: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") 
-- Found MPI_CXX: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- MPI support enabled
-- Inline functions enabled
-- Verbose debugging mode enabled
-- Checking for OpenMP
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- OpenMP support enabled
-- Building of iAPBS interface disabled
-- Adding apbs_generic
-- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c
-- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h
-- With internal header files 
-- With library dependencies mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp
-- Added apbs_generic
-- Adding apbs_pmgc
-- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c
-- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h
-- With internal header files 
-- With library dependencies mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp
-- Added apbs_pmgc
-- Adding apbs_mg
-- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c
-- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h
-- With internal header files 
-- With library dependencies mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp;apbs_generic;apbs_pmgc
-- Added apbs_mg
-- Adding apbs_fem
-- With source files vcsm.c;vfetk.c;vpee.c
-- With external header files vcsm.h;vfetk.h;vpee.h
-- With internal header files 
-- With library dependencies mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp;apbs_generic
-- Added apbs_fem
-- Adding apbs_routines
-- With source files routines.c
-- With external header files 
-- With internal header files 
-- With library dependencies mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp;mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp;apbs_generic;apbs_pmgc;apbs_mg;apbs_fem
-- Added apbs_routines
-- External Headers: 
--  
-- APBS Libraries: mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp
-- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_fem;apbs_routines
--  
-- -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC
-- Supplemental tools enabled
-- Building mesh
-- libraries: apbs_generic;apbs_mg;apbs_pmgc;apbs_fem;apbs_routines
-- Building manip
-- libraries: apbs_generic;apbs_mg;apbs_pmgc;apbs_fem;apbs_routines
CMake Deprecation Warning at tools/python/CMakeLists.txt:2 (CMAKE_POLICY):
  The OLD behavior for policy CMP0078 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at tools/python/CMakeLists.txt:3 (CMAKE_POLICY):
  The OLD behavior for policy CMP0086 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- Found SWIG: /usr/bin/swig4.0 (found version "4.2.0")  
-- Found Python3: /usr/bin/python3 (found suitable version "3.12.3", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed 
-- ***** Python3 include path is: /usr/include/python3.12
-- ***** Python3 library path is: /usr/lib/aarch64-linux-gnu/libpython3.12.so
-- ***** Python3 library dir  is: /usr/lib/aarch64-linux-gnu
CMake Warning at /usr/lib/cmake/pybind11/pybind11Tools.cmake:24 (message):
  Set PYBIND11_PYTHON_VERSION to search for a specific version, not
  PYTHON_VERSION (which is an output).  Assuming that is what you meant to do
  and continuing anyway.
Call Stack (most recent call first):
  /usr/lib/cmake/pybind11/pybind11Common.cmake:188 (include)
  /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include)
  tools/python-pybind/CMakeLists.txt:2 (find_package)


CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package)
  /usr/lib/cmake/pybind11/pybind11Common.cmake:188 (include)
  /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include)
  tools/python-pybind/CMakeLists.txt:2 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.3", minimum required is "3.6") 
-- Found PythonLibs: /usr/lib/aarch64-linux-gnu/libpython3.12.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.11.1")
-- LIBS mc;util;dl;m;stdc++;/usr/lib/aarch64-linux-gnu/libumfpack.so;/usr/lib/aarch64-linux-gnu/libspqr.so;/usr/lib/aarch64-linux-gnu/libcholmod.so;/usr/lib/aarch64-linux-gnu/libccolamd.so;/usr/lib/aarch64-linux-gnu/libcamd.so;/usr/lib/aarch64-linux-gnu/libcolamd.so;/usr/lib/aarch64-linux-gnu/libamd.so;/usr/lib/aarch64-linux-gnu/libblas.so;-lm;-ldl;/usr/lib/aarch64-linux-gnu/libblas.so;/usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so;/usr/lib/aarch64-linux-gnu/librt.a;/usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so;-fopenmp
-- INTERNAL_LIBS apbs_generic;apbs_pmgc;apbs_mg;apbs_fem;apbs_routines
-- ******* TESTING ADDED *****************
-- Found Python3: /usr/bin/python3 (found suitable exact version "3.12.3") found components: Interpreter 
-- ******* FOUND TEST CASE born, born
-- TEST  born_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t born
-- ******* FOUND TEST CASE actin, actin-dimer-auto
-- TEST  actin-dimer-auto_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t actin-dimer-auto
-- ******* FOUND TEST CASE alkanes, alkanes
-- TEST  alkanes_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t alkanes
-- ******* FOUND TEST CASE FKBP, FKBP
-- TEST  FKBP_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t FKBP
-- ******* FOUND TEST CASE hca, hca-bind
-- TEST  hca-bind_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t hca-bind
-- ******* FOUND TEST CASE ionize, ionize
-- TEST  ionize_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t ionize
-- ******* FOUND TEST CASE ion, ion-pmf
-- TEST  ion-pmf_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t ion-pmf
-- ******* FOUND TEST CASE pka, pka-lig
-- TEST  pka-lig_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t pka-lig
-- ******* FOUND TEST CASE point, point-pmf
-- TEST  point-pmf_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t point-pmf
-- ******* FOUND TEST CASE solv, solv
-- TEST  solv_test  WORKING_DIRECTORY  /<<PKGBUILDDIR>>/tests  COMMAND /usr/bin/python3 /<<PKGBUILDDIR>>/tests/apbs_tester.py -e apbs -t solv
-- Configuring done (26.8s)
-- Generating done (0.4s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    ENABLE_READLINE
    ENABLE_ZLIB


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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scg.c.o -MF CMakeFiles/cgcode.dir/scg.c.o.d -o CMakeFiles/cgcode.dir/scg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/scg.c
[  3%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/abort_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/abort_.c.o -MF CMakeFiles/vf2c.dir/abort_.c.o.d -o CMakeFiles/vf2c.dir/abort_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/abort_.c
[  3%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/exit_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/exit_.c.o -MF CMakeFiles/vf2c.dir/exit_.c.o.d -o CMakeFiles/vf2c.dir/exit_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/exit_.c
[  4%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scr.c.o
[  4%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getarg_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getarg_.c.o -MF CMakeFiles/vf2c.dir/getarg_.c.o.d -o CMakeFiles/vf2c.dir/getarg_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/getarg_.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scr.c.o -MF CMakeFiles/cgcode.dir/scr.c.o.d -o CMakeFiles/cgcode.dir/scr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/scr.c
[  4%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iargc_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iargc_.c.o -MF CMakeFiles/vf2c.dir/iargc_.c.o.d -o CMakeFiles/vf2c.dir/iargc_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/iargc_.c
[  4%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getenv_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getenv_.c.o -MF CMakeFiles/vf2c.dir/getenv_.c.o.d -o CMakeFiles/vf2c.dir/getenv_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/getenv_.c
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[  4%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scrind.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scrind.c.o -MF CMakeFiles/cgcode.dir/scrind.c.o.d -o CMakeFiles/cgcode.dir/scrind.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/scrind.c
[  4%] Built target apbslib_swig_compilation
[  5%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcg.c.o -MF CMakeFiles/cgcode.dir/spcg.c.o.d -o CMakeFiles/cgcode.dir/spcg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/spcg.c
[  6%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/signal_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/signal_.c.o -MF CMakeFiles/vf2c.dir/signal_.c.o.d -o CMakeFiles/vf2c.dir/signal_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/signal_.c
[  6%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_stop.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_stop.c.o -MF CMakeFiles/vf2c.dir/s_stop.c.o.d -o CMakeFiles/vf2c.dir/s_stop.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/s_stop.c
[  6%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgnr.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgnr.c.o -MF CMakeFiles/cgcode.dir/scgnr.c.o.d -o CMakeFiles/cgcode.dir/scgnr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/scgnr.c
[  6%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgne.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgne.c.o -MF CMakeFiles/cgcode.dir/scgne.c.o.d -o CMakeFiles/cgcode.dir/scgne.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/scgne.c
[  6%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_paus.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_paus.c.o -MF CMakeFiles/vf2c.dir/s_paus.c.o.d -o CMakeFiles/vf2c.dir/s_paus.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/s_paus.c
[  6%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/system_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/system_.c.o -MF CMakeFiles/vf2c.dir/system_.c.o.d -o CMakeFiles/vf2c.dir/system_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/system_.c
[  6%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgnr.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgnr.c.o -MF CMakeFiles/cgcode.dir/spcgnr.c.o.d -o CMakeFiles/cgcode.dir/spcgnr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/spcgnr.c
[  7%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgne.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgne.c.o -MF CMakeFiles/cgcode.dir/spcgne.c.o.d -o CMakeFiles/cgcode.dir/spcgne.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/spcgne.c
[  8%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/cabs.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/cabs.c.o -MF CMakeFiles/vf2c.dir/cabs.c.o.d -o CMakeFiles/vf2c.dir/cabs.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/cabs.c
[  8%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derf_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derf_.c.o -MF CMakeFiles/vf2c.dir/derf_.c.o.d -o CMakeFiles/vf2c.dir/derf_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/derf_.c
[  8%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derfc_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derfc_.c.o -MF CMakeFiles/vf2c.dir/derfc_.c.o.d -o CMakeFiles/vf2c.dir/derfc_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/derfc_.c
[  8%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sppcg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sppcg.c.o -MF CMakeFiles/cgcode.dir/sppcg.c.o.d -o CMakeFiles/cgcode.dir/sppcg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/sppcg.c
[  8%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgca.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgca.c.o -MF CMakeFiles/cgcode.dir/spcgca.c.o.d -o CMakeFiles/cgcode.dir/spcgca.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/spcgca.c
[  9%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erf_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erf_.c.o -MF CMakeFiles/vf2c.dir/erf_.c.o.d -o CMakeFiles/vf2c.dir/erf_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/erf_.c
[  9%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erfc_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erfc_.c.o -MF CMakeFiles/vf2c.dir/erfc_.c.o.d -o CMakeFiles/vf2c.dir/erfc_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/erfc_.c
[  9%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sig_die.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sig_die.c.o -MF CMakeFiles/vf2c.dir/sig_die.c.o.d -o CMakeFiles/vf2c.dir/sig_die.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/sig_die.c
[  9%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uninit.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uninit.c.o -MF CMakeFiles/vf2c.dir/uninit.c.o.d -o CMakeFiles/vf2c.dir/uninit.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/uninit.c
[ 10%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sdpchb.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sdpchb.c.o -MF CMakeFiles/cgcode.dir/sdpchb.c.o.d -o CMakeFiles/cgcode.dir/sdpchb.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/sdpchb.c
[ 10%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scbfix.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scbfix.c.o -MF CMakeFiles/cgcode.dir/scbfix.c.o.d -o CMakeFiles/cgcode.dir/scbfix.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/scbfix.c
[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ci.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ci.c.o -MF CMakeFiles/vf2c.dir/pow_ci.c.o.d -o CMakeFiles/vf2c.dir/pow_ci.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_ci.c
[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_dd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_dd.c.o -MF CMakeFiles/vf2c.dir/pow_dd.c.o.d -o CMakeFiles/vf2c.dir/pow_dd.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_dd.c
[ 11%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/predicates.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/predicates.cpp.o -MF CMakeFiles/gamer.dir/tetgen/predicates.cpp.o.d -o CMakeFiles/gamer.dir/tetgen/predicates.cpp.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/predicates.cpp
[ 11%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sckchb.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sckchb.c.o -MF CMakeFiles/cgcode.dir/sckchb.c.o.d -o CMakeFiles/cgcode.dir/sckchb.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/sckchb.c
[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_di.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_di.c.o -MF CMakeFiles/vf2c.dir/pow_di.c.o.d -o CMakeFiles/vf2c.dir/pow_di.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_di.c
[ 11%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgchk.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgchk.c.o -MF CMakeFiles/cgcode.dir/scgchk.c.o.d -o CMakeFiles/cgcode.dir/scgchk.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/scgchk.c
[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_hh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_hh.c.o -MF CMakeFiles/vf2c.dir/pow_hh.c.o.d -o CMakeFiles/vf2c.dir/pow_hh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_hh.c
[ 12%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ii.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ii.c.o -MF CMakeFiles/vf2c.dir/pow_ii.c.o.d -o CMakeFiles/vf2c.dir/pow_ii.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_ii.c
[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sonest.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sonest.c.o -MF CMakeFiles/cgcode.dir/sonest.c.o.d -o CMakeFiles/cgcode.dir/sonest.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/sonest.c
[ 13%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ri.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ri.c.o -MF CMakeFiles/vf2c.dir/pow_ri.c.o.d -o CMakeFiles/vf2c.dir/pow_ri.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_ri.c
[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/msstop.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/msstop.c.o -MF CMakeFiles/cgcode.dir/msstop.c.o.d -o CMakeFiles/cgcode.dir/msstop.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/msstop.c
[ 13%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zi.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zi.c.o -MF CMakeFiles/vf2c.dir/pow_zi.c.o.d -o CMakeFiles/vf2c.dir/pow_zi.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_zi.c
[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/r1mach.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/r1mach.c.o -MF CMakeFiles/cgcode.dir/r1mach.c.o.d -o CMakeFiles/cgcode.dir/r1mach.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/r1mach.c
[ 14%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zz.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zz.c.o -MF CMakeFiles/vf2c.dir/pow_zz.c.o.d -o CMakeFiles/vf2c.dir/pow_zz.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/pow_zz.c
[ 15%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sratqr.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sratqr.c.o -MF CMakeFiles/cgcode.dir/sratqr.c.o.d -o CMakeFiles/cgcode.dir/sratqr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/sratqr.c
[ 15%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_abs.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_abs.c.o -MF CMakeFiles/vf2c.dir/c_abs.c.o.d -o CMakeFiles/vf2c.dir/c_abs.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/c_abs.c
[ 15%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_cos.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_cos.c.o -MF CMakeFiles/vf2c.dir/c_cos.c.o.d -o CMakeFiles/vf2c.dir/c_cos.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/c_cos.c
[ 15%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_div.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_div.c.o -MF CMakeFiles/vf2c.dir/c_div.c.o.d -o CMakeFiles/vf2c.dir/c_div.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/c_div.c
[ 16%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_exp.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_exp.c.o -MF CMakeFiles/vf2c.dir/c_exp.c.o.d -o CMakeFiles/vf2c.dir/c_exp.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/c_exp.c
[ 16%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgdrv.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgdrv.c.o -MF CMakeFiles/cgcode.dir/dcgdrv.c.o.d -o CMakeFiles/cgcode.dir/dcgdrv.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcgdrv.c
[ 16%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_log.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_log.c.o -MF CMakeFiles/vf2c.dir/c_log.c.o.d -o CMakeFiles/vf2c.dir/c_log.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/c_log.c
[ 16%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sin.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sin.c.o -MF CMakeFiles/vf2c.dir/c_sin.c.o.d -o CMakeFiles/vf2c.dir/c_sin.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/c_sin.c
[ 16%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcg.c.o -MF CMakeFiles/cgcode.dir/dcg.c.o.d -o CMakeFiles/cgcode.dir/dcg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcg.c
[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sqrt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sqrt.c.o -MF CMakeFiles/vf2c.dir/c_sqrt.c.o.d -o CMakeFiles/vf2c.dir/c_sqrt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/c_sqrt.c
[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_abs.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_abs.c.o -MF CMakeFiles/vf2c.dir/z_abs.c.o.d -o CMakeFiles/vf2c.dir/z_abs.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/z_abs.c
[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_cos.c.o
[ 17%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcr.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcr.c.o -MF CMakeFiles/cgcode.dir/dcr.c.o.d -o CMakeFiles/cgcode.dir/dcr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcr.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_cos.c.o -MF CMakeFiles/vf2c.dir/z_cos.c.o.d -o CMakeFiles/vf2c.dir/z_cos.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/z_cos.c
[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_div.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_div.c.o -MF CMakeFiles/vf2c.dir/z_div.c.o.d -o CMakeFiles/vf2c.dir/z_div.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/z_div.c
[ 18%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_exp.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_exp.c.o -MF CMakeFiles/vf2c.dir/z_exp.c.o.d -o CMakeFiles/vf2c.dir/z_exp.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/z_exp.c
[ 19%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcrind.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcrind.c.o -MF CMakeFiles/cgcode.dir/dcrind.c.o.d -o CMakeFiles/cgcode.dir/dcrind.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcrind.c
[ 19%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_log.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_log.c.o -MF CMakeFiles/vf2c.dir/z_log.c.o.d -o CMakeFiles/vf2c.dir/z_log.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/z_log.c
[ 19%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sin.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sin.c.o -MF CMakeFiles/vf2c.dir/z_sin.c.o.d -o CMakeFiles/vf2c.dir/z_sin.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/z_sin.c
[ 19%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcg.c.o -MF CMakeFiles/cgcode.dir/dpcg.c.o.d -o CMakeFiles/cgcode.dir/dpcg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dpcg.c
[ 20%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sqrt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sqrt.c.o -MF CMakeFiles/vf2c.dir/z_sqrt.c.o.d -o CMakeFiles/vf2c.dir/z_sqrt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/z_sqrt.c
[ 20%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_abs.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_abs.c.o -MF CMakeFiles/vf2c.dir/r_abs.c.o.d -o CMakeFiles/vf2c.dir/r_abs.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_abs.c
[ 20%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_acos.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_acos.c.o -MF CMakeFiles/vf2c.dir/r_acos.c.o.d -o CMakeFiles/vf2c.dir/r_acos.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_acos.c
[ 20%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgnr.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgnr.c.o -MF CMakeFiles/cgcode.dir/dcgnr.c.o.d -o CMakeFiles/cgcode.dir/dcgnr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcgnr.c
[ 20%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_asin.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_asin.c.o -MF CMakeFiles/vf2c.dir/r_asin.c.o.d -o CMakeFiles/vf2c.dir/r_asin.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_asin.c
[ 21%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atan.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atan.c.o -MF CMakeFiles/vf2c.dir/r_atan.c.o.d -o CMakeFiles/vf2c.dir/r_atan.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_atan.c
[ 21%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgne.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgne.c.o -MF CMakeFiles/cgcode.dir/dcgne.c.o.d -o CMakeFiles/cgcode.dir/dcgne.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcgne.c
[ 21%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atn2.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atn2.c.o -MF CMakeFiles/vf2c.dir/r_atn2.c.o.d -o CMakeFiles/vf2c.dir/r_atn2.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_atn2.c
[ 21%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cnjg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cnjg.c.o -MF CMakeFiles/vf2c.dir/r_cnjg.c.o.d -o CMakeFiles/vf2c.dir/r_cnjg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_cnjg.c
[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cos.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cos.c.o -MF CMakeFiles/vf2c.dir/r_cos.c.o.d -o CMakeFiles/vf2c.dir/r_cos.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_cos.c
[ 23%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgnr.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgnr.c.o -MF CMakeFiles/cgcode.dir/dpcgnr.c.o.d -o CMakeFiles/cgcode.dir/dpcgnr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dpcgnr.c
[ 23%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cosh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cosh.c.o -MF CMakeFiles/vf2c.dir/r_cosh.c.o.d -o CMakeFiles/vf2c.dir/r_cosh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_cosh.c
[ 23%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_dim.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_dim.c.o -MF CMakeFiles/vf2c.dir/r_dim.c.o.d -o CMakeFiles/vf2c.dir/r_dim.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_dim.c
[ 23%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_exp.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_exp.c.o -MF CMakeFiles/vf2c.dir/r_exp.c.o.d -o CMakeFiles/vf2c.dir/r_exp.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_exp.c
[ 23%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgne.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgne.c.o -MF CMakeFiles/cgcode.dir/dpcgne.c.o.d -o CMakeFiles/cgcode.dir/dpcgne.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dpcgne.c
[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_imag.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_imag.c.o -MF CMakeFiles/vf2c.dir/r_imag.c.o.d -o CMakeFiles/vf2c.dir/r_imag.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_imag.c
[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_int.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_int.c.o -MF CMakeFiles/vf2c.dir/r_int.c.o.d -o CMakeFiles/vf2c.dir/r_int.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_int.c
[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_lg10.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_lg10.c.o -MF CMakeFiles/vf2c.dir/r_lg10.c.o.d -o CMakeFiles/vf2c.dir/r_lg10.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_lg10.c
[ 24%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dppcg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dppcg.c.o -MF CMakeFiles/cgcode.dir/dppcg.c.o.d -o CMakeFiles/cgcode.dir/dppcg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dppcg.c
[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_log.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_log.c.o -MF CMakeFiles/vf2c.dir/r_log.c.o.d -o CMakeFiles/vf2c.dir/r_log.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_log.c
[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_mod.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_mod.c.o -MF CMakeFiles/vf2c.dir/r_mod.c.o.d -o CMakeFiles/vf2c.dir/r_mod.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_mod.c
[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_nint.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_nint.c.o -MF CMakeFiles/vf2c.dir/r_nint.c.o.d -o CMakeFiles/vf2c.dir/r_nint.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_nint.c
[ 26%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgca.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgca.c.o -MF CMakeFiles/cgcode.dir/dpcgca.c.o.d -o CMakeFiles/cgcode.dir/dpcgca.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dpcgca.c
[ 26%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sign.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sign.c.o -MF CMakeFiles/vf2c.dir/r_sign.c.o.d -o CMakeFiles/vf2c.dir/r_sign.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_sign.c
[ 27%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sin.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sin.c.o -MF CMakeFiles/vf2c.dir/r_sin.c.o.d -o CMakeFiles/vf2c.dir/r_sin.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_sin.c
[ 27%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sinh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sinh.c.o -MF CMakeFiles/vf2c.dir/r_sinh.c.o.d -o CMakeFiles/vf2c.dir/r_sinh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_sinh.c
[ 27%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sqrt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sqrt.c.o -MF CMakeFiles/vf2c.dir/r_sqrt.c.o.d -o CMakeFiles/vf2c.dir/r_sqrt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_sqrt.c
[ 27%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/ddpchb.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/ddpchb.c.o -MF CMakeFiles/cgcode.dir/ddpchb.c.o.d -o CMakeFiles/cgcode.dir/ddpchb.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/ddpchb.c
[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tan.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tan.c.o -MF CMakeFiles/vf2c.dir/r_tan.c.o.d -o CMakeFiles/vf2c.dir/r_tan.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_tan.c
[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tanh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tanh.c.o -MF CMakeFiles/vf2c.dir/r_tanh.c.o.d -o CMakeFiles/vf2c.dir/r_tanh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/r_tanh.c
[ 28%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcbfix.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcbfix.c.o -MF CMakeFiles/cgcode.dir/dcbfix.c.o.d -o CMakeFiles/cgcode.dir/dcbfix.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcbfix.c
[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_abs.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_abs.c.o -MF CMakeFiles/vf2c.dir/d_abs.c.o.d -o CMakeFiles/vf2c.dir/d_abs.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_abs.c
[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_acos.c.o
[ 28%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dckchb.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dckchb.c.o -MF CMakeFiles/cgcode.dir/dckchb.c.o.d -o CMakeFiles/cgcode.dir/dckchb.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dckchb.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_acos.c.o -MF CMakeFiles/vf2c.dir/d_acos.c.o.d -o CMakeFiles/vf2c.dir/d_acos.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_acos.c
[ 29%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_asin.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_asin.c.o -MF CMakeFiles/vf2c.dir/d_asin.c.o.d -o CMakeFiles/vf2c.dir/d_asin.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_asin.c
[ 30%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgchk.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgchk.c.o -MF CMakeFiles/cgcode.dir/dcgchk.c.o.d -o CMakeFiles/cgcode.dir/dcgchk.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dcgchk.c
[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atan.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atan.c.o -MF CMakeFiles/vf2c.dir/d_atan.c.o.d -o CMakeFiles/vf2c.dir/d_atan.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_atan.c
[ 30%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/donest.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/donest.c.o -MF CMakeFiles/cgcode.dir/donest.c.o.d -o CMakeFiles/cgcode.dir/donest.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/donest.c
[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atn2.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atn2.c.o -MF CMakeFiles/vf2c.dir/d_atn2.c.o.d -o CMakeFiles/vf2c.dir/d_atn2.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_atn2.c
[ 30%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/mdstop.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/mdstop.c.o -MF CMakeFiles/cgcode.dir/mdstop.c.o.d -o CMakeFiles/cgcode.dir/mdstop.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/mdstop.c
[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cnjg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cnjg.c.o -MF CMakeFiles/vf2c.dir/d_cnjg.c.o.d -o CMakeFiles/vf2c.dir/d_cnjg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_cnjg.c
[ 31%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cos.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cos.c.o -MF CMakeFiles/vf2c.dir/d_cos.c.o.d -o CMakeFiles/vf2c.dir/d_cos.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_cos.c
[ 32%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/d1mach.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/d1mach.c.o -MF CMakeFiles/cgcode.dir/d1mach.c.o.d -o CMakeFiles/cgcode.dir/d1mach.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/d1mach.c
[ 32%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dratqr.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dratqr.c.o -MF CMakeFiles/cgcode.dir/dratqr.c.o.d -o CMakeFiles/cgcode.dir/dratqr.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/dratqr.c
[ 32%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cosh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cosh.c.o -MF CMakeFiles/vf2c.dir/d_cosh.c.o.d -o CMakeFiles/vf2c.dir/d_cosh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_cosh.c
[ 32%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_dim.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_dim.c.o -MF CMakeFiles/vf2c.dir/d_dim.c.o.d -o CMakeFiles/vf2c.dir/d_dim.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_dim.c
[ 33%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_exp.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_exp.c.o -MF CMakeFiles/vf2c.dir/d_exp.c.o.d -o CMakeFiles/vf2c.dir/d_exp.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_exp.c
[ 33%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_imag.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_imag.c.o -MF CMakeFiles/vf2c.dir/d_imag.c.o.d -o CMakeFiles/vf2c.dir/d_imag.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_imag.c
[ 33%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_int.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_int.c.o -MF CMakeFiles/vf2c.dir/d_int.c.o.d -o CMakeFiles/vf2c.dir/d_int.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_int.c
[ 33%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/depsln.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/depsln.c.o -MF CMakeFiles/cgcode.dir/depsln.c.o.d -o CMakeFiles/cgcode.dir/depsln.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode/depsln.c
[ 33%] Linking C shared library libcgcode.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cmake -E cmake_link_script CMakeFiles/cgcode.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libcgcode.so.1.9 -o libcgcode.so.1.9.3 CMakeFiles/cgcode.dir/scgdrv.c.o CMakeFiles/cgcode.dir/scg.c.o CMakeFiles/cgcode.dir/scr.c.o CMakeFiles/cgcode.dir/scrind.c.o CMakeFiles/cgcode.dir/spcg.c.o CMakeFiles/cgcode.dir/scgnr.c.o CMakeFiles/cgcode.dir/scgne.c.o CMakeFiles/cgcode.dir/spcgnr.c.o CMakeFiles/cgcode.dir/spcgne.c.o CMakeFiles/cgcode.dir/sppcg.c.o CMakeFiles/cgcode.dir/spcgca.c.o CMakeFiles/cgcode.dir/sdpchb.c.o CMakeFiles/cgcode.dir/scbfix.c.o CMakeFiles/cgcode.dir/sckchb.c.o CMakeFiles/cgcode.dir/scgchk.c.o CMakeFiles/cgcode.dir/sonest.c.o CMakeFiles/cgcode.dir/msstop.c.o CMakeFiles/cgcode.dir/r1mach.c.o CMakeFiles/cgcode.dir/sratqr.c.o CMakeFiles/cgcode.dir/dcgdrv.c.o CMakeFiles/cgcode.dir/dcg.c.o CMakeFiles/cgcode.dir/dcr.c.o CMakeFiles/cgcode.dir/dcrind.c.o CMakeFiles/cgcode.dir/dpcg.c.o CMakeFiles/cgcode.dir/dcgnr.c.o CMakeFiles/cgcode.dir/dcgne.c.o CMakeFiles/cgcode.dir/dpcgnr.c.o CMakeFiles/cgcode.dir/dpcgne.c.o CMakeFiles/cgcode.dir/dppcg.c.o CMakeFiles/cgcode.dir/dpcgca.c.o CMakeFiles/cgcode.dir/ddpchb.c.o CMakeFiles/cgcode.dir/dcbfix.c.o CMakeFiles/cgcode.dir/dckchb.c.o CMakeFiles/cgcode.dir/dcgchk.c.o CMakeFiles/cgcode.dir/donest.c.o CMakeFiles/cgcode.dir/mdstop.c.o CMakeFiles/cgcode.dir/d1mach.c.o CMakeFiles/cgcode.dir/dratqr.c.o CMakeFiles/cgcode.dir/depsln.c.o 
[ 33%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_lg10.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_lg10.c.o -MF CMakeFiles/vf2c.dir/d_lg10.c.o.d -o CMakeFiles/vf2c.dir/d_lg10.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_lg10.c
[ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_log.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_log.c.o -MF CMakeFiles/vf2c.dir/d_log.c.o.d -o CMakeFiles/vf2c.dir/d_log.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_log.c
/usr/src/apbs-3.4.1-5.1ubuntu2/debian/external_deps/fetk/punc/src/cgcode/donest.c:34:33: warning: type of ‘sratqr_’ does not match original declaration [-Wlto-type-mismatch]
/usr/src/apbs-3.4.1-5.1ubuntu2/debian/external_deps/fetk/punc/src/cgcode/sratqr.c:12:22: note: ‘sratqr_’ was previously declared here
/usr/src/apbs-3.4.1-5.1ubuntu2/debian/external_deps/fetk/punc/src/cgcode/sratqr.c:12:22: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
[ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_mod.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_mod.c.o -MF CMakeFiles/vf2c.dir/d_mod.c.o.d -o CMakeFiles/vf2c.dir/d_mod.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_mod.c
[ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_nint.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_nint.c.o -MF CMakeFiles/vf2c.dir/d_nint.c.o.d -o CMakeFiles/vf2c.dir/d_nint.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_nint.c
[ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_prod.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_prod.c.o -MF CMakeFiles/vf2c.dir/d_prod.c.o.d -o CMakeFiles/vf2c.dir/d_prod.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_prod.c
[ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sign.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sign.c.o -MF CMakeFiles/vf2c.dir/d_sign.c.o.d -o CMakeFiles/vf2c.dir/d_sign.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_sign.c
[ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sin.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sin.c.o -MF CMakeFiles/vf2c.dir/d_sin.c.o.d -o CMakeFiles/vf2c.dir/d_sin.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_sin.c
[ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sinh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sinh.c.o -MF CMakeFiles/vf2c.dir/d_sinh.c.o.d -o CMakeFiles/vf2c.dir/d_sinh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_sinh.c
[ 36%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sqrt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sqrt.c.o -MF CMakeFiles/vf2c.dir/d_sqrt.c.o.d -o CMakeFiles/vf2c.dir/d_sqrt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_sqrt.c
[ 36%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tan.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tan.c.o -MF CMakeFiles/vf2c.dir/d_tan.c.o.d -o CMakeFiles/vf2c.dir/d_tan.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_tan.c
[ 36%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tanh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tanh.c.o -MF CMakeFiles/vf2c.dir/d_tanh.c.o.d -o CMakeFiles/vf2c.dir/d_tanh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/d_tanh.c
[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_abs.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_abs.c.o -MF CMakeFiles/vf2c.dir/i_abs.c.o.d -o CMakeFiles/vf2c.dir/i_abs.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_abs.c
[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dim.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dim.c.o -MF CMakeFiles/vf2c.dir/i_dim.c.o.d -o CMakeFiles/vf2c.dir/i_dim.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_dim.c
[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dnnt.c.o
[ 37%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o -MF CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o.d -o CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dnnt.c.o -MF CMakeFiles/vf2c.dir/i_dnnt.c.o.d -o CMakeFiles/vf2c.dir/i_dnnt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_dnnt.c
[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_indx.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_indx.c.o -MF CMakeFiles/vf2c.dir/i_indx.c.o.d -o CMakeFiles/vf2c.dir/i_indx.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_indx.c
[ 38%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_len.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_len.c.o -MF CMakeFiles/vf2c.dir/i_len.c.o.d -o CMakeFiles/vf2c.dir/i_len.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_len.c
[ 38%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_mod.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_mod.c.o -MF CMakeFiles/vf2c.dir/i_mod.c.o.d -o CMakeFiles/vf2c.dir/i_mod.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_mod.c
[ 38%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_nint.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_nint.c.o -MF CMakeFiles/vf2c.dir/i_nint.c.o.d -o CMakeFiles/vf2c.dir/i_nint.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_nint.c
[ 39%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_sign.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_sign.c.o -MF CMakeFiles/vf2c.dir/i_sign.c.o.d -o CMakeFiles/vf2c.dir/i_sign.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/i_sign.c
[ 39%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitbits.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitbits.c.o -MF CMakeFiles/vf2c.dir/lbitbits.c.o.d -o CMakeFiles/vf2c.dir/lbitbits.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/lbitbits.c
[ 39%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitshft.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitshft.c.o -MF CMakeFiles/vf2c.dir/lbitshft.c.o.d -o CMakeFiles/vf2c.dir/lbitshft.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/lbitshft.c
[ 39%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_abs.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_abs.c.o -MF CMakeFiles/vf2c.dir/h_abs.c.o.d -o CMakeFiles/vf2c.dir/h_abs.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_abs.c
[ 40%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dim.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dim.c.o -MF CMakeFiles/vf2c.dir/h_dim.c.o.d -o CMakeFiles/vf2c.dir/h_dim.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_dim.c
[ 41%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/CorrectNormals.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/CorrectNormals.C.o -MF CMakeFiles/gamer.dir/biom/CorrectNormals.C.o.d -o CMakeFiles/gamer.dir/biom/CorrectNormals.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/CorrectNormals.C
[ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dnnt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dnnt.c.o -MF CMakeFiles/vf2c.dir/h_dnnt.c.o.d -o CMakeFiles/vf2c.dir/h_dnnt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_dnnt.c
[ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_indx.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_indx.c.o -MF CMakeFiles/vf2c.dir/h_indx.c.o.d -o CMakeFiles/vf2c.dir/h_indx.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_indx.c
[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_len.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_len.c.o -MF CMakeFiles/vf2c.dir/h_len.c.o.d -o CMakeFiles/vf2c.dir/h_len.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_len.c
[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_mod.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_mod.c.o -MF CMakeFiles/vf2c.dir/h_mod.c.o.d -o CMakeFiles/vf2c.dir/h_mod.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_mod.c
[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_nint.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_nint.c.o -MF CMakeFiles/vf2c.dir/h_nint.c.o.d -o CMakeFiles/vf2c.dir/h_nint.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_nint.c
[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_sign.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_sign.c.o -MF CMakeFiles/vf2c.dir/h_sign.c.o.d -o CMakeFiles/vf2c.dir/h_sign.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/h_sign.c
[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_ge.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_ge.c.o -MF CMakeFiles/vf2c.dir/l_ge.c.o.d -o CMakeFiles/vf2c.dir/l_ge.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/l_ge.c
[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_gt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_gt.c.o -MF CMakeFiles/vf2c.dir/l_gt.c.o.d -o CMakeFiles/vf2c.dir/l_gt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/l_gt.c
[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_le.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_le.c.o -MF CMakeFiles/vf2c.dir/l_le.c.o.d -o CMakeFiles/vf2c.dir/l_le.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/l_le.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp: In member function ‘void tetgenmesh::constrainedfacets()’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:20804:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
20804 |   equatptlist = new list("point *");
      |                          ^~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:20809:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
20809 |   horizptlist = new list("point *");
      |                          ^~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:20810:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
20810 |   belowptlist = new list("point *");
      |                          ^~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:20811:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
20811 |   aboveptlist = new list("point *");
      |                          ^~~~~~~~~
[ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_lt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_lt.c.o -MF CMakeFiles/vf2c.dir/l_lt.c.o.d -o CMakeFiles/vf2c.dir/l_lt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/l_lt.c
[ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_ge.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_ge.c.o -MF CMakeFiles/vf2c.dir/hl_ge.c.o.d -o CMakeFiles/vf2c.dir/hl_ge.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/hl_ge.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp: In member function ‘long int tetgenmesh::reconstructmesh()’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:24383:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
24383 |   markerlist = new list("int");
      |                         ^~~~~
[ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_gt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_gt.c.o -MF CMakeFiles/vf2c.dir/hl_gt.c.o.d -o CMakeFiles/vf2c.dir/hl_gt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/hl_gt.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cmake -E cmake_symlink_library libcgcode.so.1.9.3 libcgcode.so.1.9 libcgcode.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 44%] Built target cgcode
[ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_le.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_le.c.o -MF CMakeFiles/vf2c.dir/hl_le.c.o.d -o CMakeFiles/vf2c.dir/hl_le.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/hl_le.c
[ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_lt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_lt.c.o -MF CMakeFiles/vf2c.dir/hl_lt.c.o.d -o CMakeFiles/vf2c.dir/hl_lt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/hl_lt.c
[ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1asc_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1asc_.c.o -MF CMakeFiles/vf2c.dir/ef1asc_.c.o.d -o CMakeFiles/vf2c.dir/ef1asc_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/ef1asc_.c
[ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1cmc_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1cmc_.c.o -MF CMakeFiles/vf2c.dir/ef1cmc_.c.o.d -o CMakeFiles/vf2c.dir/ef1cmc_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/ef1cmc_.c
[ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77_aloc.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77_aloc.c.o -MF CMakeFiles/vf2c.dir/f77_aloc.c.o.d -o CMakeFiles/vf2c.dir/f77_aloc.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/f77_aloc.c
[ 46%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cat.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cat.c.o -MF CMakeFiles/vf2c.dir/s_cat.c.o.d -o CMakeFiles/vf2c.dir/s_cat.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/s_cat.c
[ 46%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o -MF CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o.d -o CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/GenerateSphereMesh.C
[ 46%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cmp.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cmp.c.o -MF CMakeFiles/vf2c.dir/s_cmp.c.o.d -o CMakeFiles/vf2c.dir/s_cmp.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/s_cmp.c
[ 46%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_copy.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_copy.c.o -MF CMakeFiles/vf2c.dir/s_copy.c.o.d -o CMakeFiles/vf2c.dir/s_copy.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/s_copy.c
[ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dtime_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dtime_.c.o -MF CMakeFiles/vf2c.dir/dtime_.c.o.d -o CMakeFiles/vf2c.dir/dtime_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/dtime_.c
[ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/etime_.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/etime_.c.o -MF CMakeFiles/vf2c.dir/etime_.c.o.d -o CMakeFiles/vf2c.dir/etime_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/etime_.c
[ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/backspac.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/backspac.c.o -MF CMakeFiles/vf2c.dir/backspac.c.o.d -o CMakeFiles/vf2c.dir/backspac.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/backspac.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/backspac.c: In function ‘f_back’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/backspac.c:47:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   47 |                 fread((char *)&n,sizeof(uiolen),1,f);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/close.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/close.c.o -MF CMakeFiles/vf2c.dir/close.c.o.d -o CMakeFiles/vf2c.dir/close.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/close.c
[ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dfe.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dfe.c.o -MF CMakeFiles/vf2c.dir/dfe.c.o.d -o CMakeFiles/vf2c.dir/dfe.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/dfe.c
[ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dolio.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dolio.c.o -MF CMakeFiles/vf2c.dir/dolio.c.o.d -o CMakeFiles/vf2c.dir/dolio.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/dolio.c
[ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/due.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/due.c.o -MF CMakeFiles/vf2c.dir/due.c.o.d -o CMakeFiles/vf2c.dir/due.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/due.c
[ 48%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/MarchingCube.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/MarchingCube.C.o -MF CMakeFiles/gamer.dir/biom/MarchingCube.C.o.d -o CMakeFiles/gamer.dir/biom/MarchingCube.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/MarchingCube.C
[ 49%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/endfile.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/endfile.c.o -MF CMakeFiles/vf2c.dir/endfile.c.o.d -o CMakeFiles/vf2c.dir/endfile.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/endfile.c
[ 49%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/err.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/err.c.o -MF CMakeFiles/vf2c.dir/err.c.o.d -o CMakeFiles/vf2c.dir/err.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/err.c
[ 49%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmt.c.o -MF CMakeFiles/vf2c.dir/fmt.c.o.d -o CMakeFiles/vf2c.dir/fmt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/fmt.c
[ 50%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o -MF CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o.d -o CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/PDB2Mesh.C
[ 50%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmtlib.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmtlib.c.o -MF CMakeFiles/vf2c.dir/fmtlib.c.o.d -o CMakeFiles/vf2c.dir/fmtlib.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/fmtlib.c
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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ftell_.c.o -MF CMakeFiles/vf2c.dir/ftell_.c.o.d -o CMakeFiles/vf2c.dir/ftell_.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/ftell_.c
[ 51%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iio.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iio.c.o -MF CMakeFiles/vf2c.dir/iio.c.o.d -o CMakeFiles/vf2c.dir/iio.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/iio.c
[ 51%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ilnw.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ilnw.c.o -MF CMakeFiles/vf2c.dir/ilnw.c.o.d -o CMakeFiles/vf2c.dir/ilnw.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/ilnw.c
[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/inquire.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/inquire.c.o -MF CMakeFiles/vf2c.dir/inquire.c.o.d -o CMakeFiles/vf2c.dir/inquire.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/inquire.c
[ 52%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Volume.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Volume.C.o -MF CMakeFiles/gamer.dir/biom/PDB2Volume.C.o.d -o CMakeFiles/gamer.dir/biom/PDB2Volume.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C
[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lread.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lread.c.o -MF CMakeFiles/vf2c.dir/lread.c.o.d -o CMakeFiles/vf2c.dir/lread.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/lread.c
[ 52%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadLattice.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadLattice.C.o -MF CMakeFiles/gamer.dir/biom/ReadLattice.C.o.d -o CMakeFiles/gamer.dir/biom/ReadLattice.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadLattice.C
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C: In function ‘float PDB2Volume(char*, float**, int*, int*, int*, float*, float*, ATOM**, int*, char)’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C:85:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   85 |     fscanf(fp,"%d\n",&m);
      |     ~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C:88:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   88 |       fscanf(fp,"%f %f %f %f\n",&x,&y,&z,&radius);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lwrite.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lwrite.c.o -MF CMakeFiles/vf2c.dir/lwrite.c.o.d -o CMakeFiles/vf2c.dir/lwrite.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/lwrite.c
[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/open.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/open.c.o -MF CMakeFiles/vf2c.dir/open.c.o.d -o CMakeFiles/vf2c.dir/open.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/open.c
[ 52%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadPDB.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadPDB.C.o -MF CMakeFiles/gamer.dir/biom/ReadPDB.C.o.d -o CMakeFiles/gamer.dir/biom/ReadPDB.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadPDB.C
[ 53%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o -MF CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o.d -o CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C
[ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rdfmt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rdfmt.c.o -MF CMakeFiles/vf2c.dir/rdfmt.c.o.d -o CMakeFiles/vf2c.dir/rdfmt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/rdfmt.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C: In function ‘SurfaceMesh* SurfaceMesh_readOFF(char*)’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:401:14: warning: too many arguments for format [-Wformat-extra-args]
  401 |       printf("Read error. Expected 3 integers for the first simplex.\n", n);
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:494:14: warning: too many arguments for format [-Wformat-extra-args]
  494 |       printf("Read error. Expected 4 integers for the first simplex.\n", n);
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C: In function ‘GemMesh* GemMesh_fromSurfaceMesh(SurfaceMesh*, char*)’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:754:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  754 |   in.save_nodes("plc");
      |                 ^~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:755:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  755 |   in.save_poly("plc");
      |                ^~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:761:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  761 |   out.save_nodes("result");
      |                  ^~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:762:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  762 |   out.save_elements("result");
      |                     ^~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:763:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  763 |   out.save_faces("result");
      |                  ^~~~~~~~
[ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rewind.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rewind.c.o -MF CMakeFiles/vf2c.dir/rewind.c.o.d -o CMakeFiles/vf2c.dir/rewind.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/rewind.c
[ 54%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/RegionGrowing.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/RegionGrowing.C.o -MF CMakeFiles/gamer.dir/biom/RegionGrowing.C.o.d -o CMakeFiles/gamer.dir/biom/RegionGrowing.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/RegionGrowing.C
[ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsfe.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsfe.c.o -MF CMakeFiles/vf2c.dir/rsfe.c.o.d -o CMakeFiles/vf2c.dir/rsfe.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/rsfe.c
[ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsli.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsli.c.o -MF CMakeFiles/vf2c.dir/rsli.c.o.d -o CMakeFiles/vf2c.dir/rsli.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/rsli.c
[ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsne.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsne.c.o -MF CMakeFiles/vf2c.dir/rsne.c.o.d -o CMakeFiles/vf2c.dir/rsne.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/rsne.c
[ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sfe.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sfe.c.o -MF CMakeFiles/vf2c.dir/sfe.c.o.d -o CMakeFiles/vf2c.dir/sfe.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/sfe.c
[ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sue.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sue.c.o -MF CMakeFiles/vf2c.dir/sue.c.o.d -o CMakeFiles/vf2c.dir/sue.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/sue.c
[ 56%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/typesize.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/typesize.c.o -MF CMakeFiles/vf2c.dir/typesize.c.o.d -o CMakeFiles/vf2c.dir/typesize.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/typesize.c
[ 56%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfaceMesh.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfaceMesh.C.o -MF CMakeFiles/gamer.dir/biom/SurfaceMesh.C.o.d -o CMakeFiles/gamer.dir/biom/SurfaceMesh.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/SurfaceMesh.C
[ 57%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfExtract.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfExtract.C.o -MF CMakeFiles/gamer.dir/biom/SurfExtract.C.o.d -o CMakeFiles/gamer.dir/biom/SurfExtract.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/SurfExtract.C
[ 57%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uio.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uio.c.o -MF CMakeFiles/vf2c.dir/uio.c.o.d -o CMakeFiles/vf2c.dir/uio.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/uio.c
[ 57%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/util.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/util.c.o -MF CMakeFiles/vf2c.dir/util.c.o.d -o CMakeFiles/vf2c.dir/util.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/util.c
[ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wref.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wref.c.o -MF CMakeFiles/vf2c.dir/wref.c.o.d -o CMakeFiles/vf2c.dir/wref.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/wref.c
[ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wrtfmt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wrtfmt.c.o -MF CMakeFiles/vf2c.dir/wrtfmt.c.o.d -o CMakeFiles/vf2c.dir/wrtfmt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/wrtfmt.c
[ 58%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfRefine.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfRefine.C.o -MF CMakeFiles/gamer.dir/biom/SurfRefine.C.o.d -o CMakeFiles/gamer.dir/biom/SurfRefine.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/SurfRefine.C
[ 58%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfSmooth.C.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/triangle -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/tetgen -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfSmooth.C.o -MF CMakeFiles/gamer.dir/biom/SurfSmooth.C.o.d -o CMakeFiles/gamer.dir/biom/SurfSmooth.C.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/gamer/src/biom/SurfSmooth.C
[ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsfe.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsfe.c.o -MF CMakeFiles/vf2c.dir/wsfe.c.o.d -o CMakeFiles/vf2c.dir/wsfe.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/wsfe.c
[ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsle.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsle.c.o -MF CMakeFiles/vf2c.dir/wsle.c.o.d -o CMakeFiles/vf2c.dir/wsle.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/wsle.c
[ 59%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsne.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsne.c.o -MF CMakeFiles/vf2c.dir/wsne.c.o.d -o CMakeFiles/vf2c.dir/wsne.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/wsne.c
[ 59%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/xwsne.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/xwsne.c.o -MF CMakeFiles/vf2c.dir/xwsne.c.o.d -o CMakeFiles/vf2c.dir/xwsne.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/xwsne.c
[ 59%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/main.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/main.c.o -MF CMakeFiles/vf2c.dir/main.c.o.d -o CMakeFiles/vf2c.dir/main.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/main.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/main.c:115:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  115 | main(int argc, char **argv)
      | ^~~~
[ 60%] Linking C shared library libvf2c.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cmake -E cmake_link_script CMakeFiles/vf2c.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libvf2c.so.1.9 -o libvf2c.so.1.9.3 CMakeFiles/vf2c.dir/f77vers.c.o CMakeFiles/vf2c.dir/i77vers.c.o CMakeFiles/vf2c.dir/s_rnge.c.o CMakeFiles/vf2c.dir/abort_.c.o CMakeFiles/vf2c.dir/exit_.c.o CMakeFiles/vf2c.dir/getarg_.c.o CMakeFiles/vf2c.dir/iargc_.c.o CMakeFiles/vf2c.dir/getenv_.c.o CMakeFiles/vf2c.dir/signal_.c.o CMakeFiles/vf2c.dir/s_stop.c.o CMakeFiles/vf2c.dir/s_paus.c.o CMakeFiles/vf2c.dir/system_.c.o CMakeFiles/vf2c.dir/cabs.c.o CMakeFiles/vf2c.dir/derf_.c.o CMakeFiles/vf2c.dir/derfc_.c.o CMakeFiles/vf2c.dir/erf_.c.o CMakeFiles/vf2c.dir/erfc_.c.o CMakeFiles/vf2c.dir/sig_die.c.o CMakeFiles/vf2c.dir/uninit.c.o CMakeFiles/vf2c.dir/pow_ci.c.o CMakeFiles/vf2c.dir/pow_dd.c.o CMakeFiles/vf2c.dir/pow_di.c.o CMakeFiles/vf2c.dir/pow_hh.c.o CMakeFiles/vf2c.dir/pow_ii.c.o CMakeFiles/vf2c.dir/pow_ri.c.o CMakeFiles/vf2c.dir/pow_zi.c.o CMakeFiles/vf2c.dir/pow_zz.c.o CMakeFiles/vf2c.dir/c_abs.c.o CMakeFiles/vf2c.dir/c_cos.c.o CMakeFiles/vf2c.dir/c_div.c.o CMakeFiles/vf2c.dir/c_exp.c.o CMakeFiles/vf2c.dir/c_log.c.o CMakeFiles/vf2c.dir/c_sin.c.o CMakeFiles/vf2c.dir/c_sqrt.c.o CMakeFiles/vf2c.dir/z_abs.c.o CMakeFiles/vf2c.dir/z_cos.c.o CMakeFiles/vf2c.dir/z_div.c.o CMakeFiles/vf2c.dir/z_exp.c.o CMakeFiles/vf2c.dir/z_log.c.o CMakeFiles/vf2c.dir/z_sin.c.o CMakeFiles/vf2c.dir/z_sqrt.c.o CMakeFiles/vf2c.dir/r_abs.c.o CMakeFiles/vf2c.dir/r_acos.c.o CMakeFiles/vf2c.dir/r_asin.c.o CMakeFiles/vf2c.dir/r_atan.c.o CMakeFiles/vf2c.dir/r_atn2.c.o CMakeFiles/vf2c.dir/r_cnjg.c.o CMakeFiles/vf2c.dir/r_cos.c.o CMakeFiles/vf2c.dir/r_cosh.c.o CMakeFiles/vf2c.dir/r_dim.c.o CMakeFiles/vf2c.dir/r_exp.c.o CMakeFiles/vf2c.dir/r_imag.c.o CMakeFiles/vf2c.dir/r_int.c.o CMakeFiles/vf2c.dir/r_lg10.c.o CMakeFiles/vf2c.dir/r_log.c.o CMakeFiles/vf2c.dir/r_mod.c.o CMakeFiles/vf2c.dir/r_nint.c.o CMakeFiles/vf2c.dir/r_sign.c.o CMakeFiles/vf2c.dir/r_sin.c.o CMakeFiles/vf2c.dir/r_sinh.c.o CMakeFiles/vf2c.dir/r_sqrt.c.o CMakeFiles/vf2c.dir/r_tan.c.o CMakeFiles/vf2c.dir/r_tanh.c.o CMakeFiles/vf2c.dir/d_abs.c.o CMakeFiles/vf2c.dir/d_acos.c.o CMakeFiles/vf2c.dir/d_asin.c.o CMakeFiles/vf2c.dir/d_atan.c.o CMakeFiles/vf2c.dir/d_atn2.c.o CMakeFiles/vf2c.dir/d_cnjg.c.o CMakeFiles/vf2c.dir/d_cos.c.o CMakeFiles/vf2c.dir/d_cosh.c.o CMakeFiles/vf2c.dir/d_dim.c.o CMakeFiles/vf2c.dir/d_exp.c.o CMakeFiles/vf2c.dir/d_imag.c.o CMakeFiles/vf2c.dir/d_int.c.o CMakeFiles/vf2c.dir/d_lg10.c.o CMakeFiles/vf2c.dir/d_log.c.o CMakeFiles/vf2c.dir/d_mod.c.o CMakeFiles/vf2c.dir/d_nint.c.o CMakeFiles/vf2c.dir/d_prod.c.o CMakeFiles/vf2c.dir/d_sign.c.o CMakeFiles/vf2c.dir/d_sin.c.o CMakeFiles/vf2c.dir/d_sinh.c.o CMakeFiles/vf2c.dir/d_sqrt.c.o CMakeFiles/vf2c.dir/d_tan.c.o CMakeFiles/vf2c.dir/d_tanh.c.o CMakeFiles/vf2c.dir/i_abs.c.o CMakeFiles/vf2c.dir/i_dim.c.o CMakeFiles/vf2c.dir/i_dnnt.c.o CMakeFiles/vf2c.dir/i_indx.c.o CMakeFiles/vf2c.dir/i_len.c.o CMakeFiles/vf2c.dir/i_mod.c.o CMakeFiles/vf2c.dir/i_nint.c.o CMakeFiles/vf2c.dir/i_sign.c.o CMakeFiles/vf2c.dir/lbitbits.c.o CMakeFiles/vf2c.dir/lbitshft.c.o CMakeFiles/vf2c.dir/h_abs.c.o CMakeFiles/vf2c.dir/h_dim.c.o CMakeFiles/vf2c.dir/h_dnnt.c.o CMakeFiles/vf2c.dir/h_indx.c.o CMakeFiles/vf2c.dir/h_len.c.o CMakeFiles/vf2c.dir/h_mod.c.o CMakeFiles/vf2c.dir/h_nint.c.o CMakeFiles/vf2c.dir/h_sign.c.o CMakeFiles/vf2c.dir/l_ge.c.o CMakeFiles/vf2c.dir/l_gt.c.o CMakeFiles/vf2c.dir/l_le.c.o CMakeFiles/vf2c.dir/l_lt.c.o CMakeFiles/vf2c.dir/hl_ge.c.o CMakeFiles/vf2c.dir/hl_gt.c.o CMakeFiles/vf2c.dir/hl_le.c.o CMakeFiles/vf2c.dir/hl_lt.c.o CMakeFiles/vf2c.dir/ef1asc_.c.o CMakeFiles/vf2c.dir/ef1cmc_.c.o CMakeFiles/vf2c.dir/f77_aloc.c.o CMakeFiles/vf2c.dir/s_cat.c.o CMakeFiles/vf2c.dir/s_cmp.c.o CMakeFiles/vf2c.dir/s_copy.c.o CMakeFiles/vf2c.dir/dtime_.c.o CMakeFiles/vf2c.dir/etime_.c.o CMakeFiles/vf2c.dir/backspac.c.o CMakeFiles/vf2c.dir/close.c.o CMakeFiles/vf2c.dir/dfe.c.o CMakeFiles/vf2c.dir/dolio.c.o CMakeFiles/vf2c.dir/due.c.o CMakeFiles/vf2c.dir/endfile.c.o CMakeFiles/vf2c.dir/err.c.o CMakeFiles/vf2c.dir/fmt.c.o CMakeFiles/vf2c.dir/fmtlib.c.o CMakeFiles/vf2c.dir/ftell_.c.o CMakeFiles/vf2c.dir/iio.c.o CMakeFiles/vf2c.dir/ilnw.c.o CMakeFiles/vf2c.dir/inquire.c.o CMakeFiles/vf2c.dir/lread.c.o CMakeFiles/vf2c.dir/lwrite.c.o CMakeFiles/vf2c.dir/open.c.o CMakeFiles/vf2c.dir/rdfmt.c.o CMakeFiles/vf2c.dir/rewind.c.o CMakeFiles/vf2c.dir/rsfe.c.o CMakeFiles/vf2c.dir/rsli.c.o CMakeFiles/vf2c.dir/rsne.c.o CMakeFiles/vf2c.dir/sfe.c.o CMakeFiles/vf2c.dir/sue.c.o CMakeFiles/vf2c.dir/typesize.c.o CMakeFiles/vf2c.dir/uio.c.o CMakeFiles/vf2c.dir/util.c.o CMakeFiles/vf2c.dir/wref.c.o CMakeFiles/vf2c.dir/wrtfmt.c.o CMakeFiles/vf2c.dir/wsfe.c.o CMakeFiles/vf2c.dir/wsle.c.o CMakeFiles/vf2c.dir/wsne.c.o CMakeFiles/vf2c.dir/xwsne.c.o CMakeFiles/vf2c.dir/main.c.o 
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cmake -E cmake_symlink_library libvf2c.so.1.9.3 libvf2c.so.1.9 libvf2c.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 60%] Built target vf2c
make  -f _deps/fetk-build/punc/src/CMakeFiles/punc.dir/build.make _deps/fetk-build/punc/src/CMakeFiles/punc.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src/CMakeFiles/punc.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f _deps/fetk-build/punc/src/CMakeFiles/punc.dir/build.make _deps/fetk-build/punc/src/CMakeFiles/punc.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 60%] Building C object _deps/fetk-build/punc/src/CMakeFiles/punc.dir/base/punc_base.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src && /usr/bin/cc -Dpunc_EXPORTS -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/CMakeFiles/punc.dir/base/punc_base.c.o -MF CMakeFiles/punc.dir/base/punc_base.c.o.d -o CMakeFiles/punc.dir/base/punc_base.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base/punc_base.c
[ 60%] Linking C shared library libpunc.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/punc.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libpunc.so.1.9 -o libpunc.so.1.9.3 CMakeFiles/punc.dir/base/punc_base.c.o  -lmaloc /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so vf2c/libvf2c.so.1.9.3 cgcode/libcgcode.so.1.9.3 
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src && /usr/bin/cmake -E cmake_symlink_library libpunc.so.1.9.3 libpunc.so.1.9 libpunc.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 60%] Built target punc
make  -f _deps/fetk-build/mc/src/CMakeFiles/mc.dir/build.make _deps/fetk-build/mc/src/CMakeFiles/mc.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src/CMakeFiles/mc.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f _deps/fetk-build/mc/src/CMakeFiles/mc.dir/build.make _deps/fetk-build/mc/src/CMakeFiles/mc.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bmat.c.o
[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/base/mc_base.c.o
[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bsolv.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bmat.c.o -MF CMakeFiles/mc.dir/bam/bmat.c.o.d -o CMakeFiles/mc.dir/bam/bmat.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bsolv.c.o -MF CMakeFiles/mc.dir/bam/bsolv.c.o.d -o CMakeFiles/mc.dir/bam/bsolv.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/base/mc_base.c.o -MF CMakeFiles/mc.dir/base/mc_base.c.o.d -o CMakeFiles/mc.dir/base/mc_base.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc_base.c
[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bvec.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bvec.c.o -MF CMakeFiles/mc.dir/bam/bvec.c.o.d -o CMakeFiles/mc.dir/bam/bvec.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bvec.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c: In function ‘Bmat_ctor’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:104:36: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 5 and 14 [-Wformat-overflow=]
  104 |                 sprintf(bname, "%s_%d%d", thee->name, p, q);
      |                                    ^~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:104:32: note: directive argument in the range [0, 2147483646]
  104 |                 sprintf(bname, "%s_%d%d", thee->name, p, q);
      |                                ^~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:104:32: note: directive argument in the range [0, 3]
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/mc/bmat.h:121,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:34:
In function ‘sprintf’,
    inlined from ‘Bmat_ctor’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:104:17:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 22 bytes into a destination of size 15
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function ‘Bvec_bcg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:922:29: warning: ‘%s’ directive writing up to 79 bytes into a region of size 72 [-Wformat-overflow=]
  922 |         sprintf(rn,"Bvec_bcg%s",rmeth);
      |                             ^~  ~~~~~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/mc/bvec.h:41,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bvec_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:34:
In function ‘sprintf’,
    inlined from ‘Bvec_bcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:922:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 9 and 88 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function ‘Bvec_bcg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:919:33: warning: ‘%s’ directive writing up to 79 bytes into a region of size 68 [-Wformat-overflow=]
  919 |         sprintf(rn,"--->Bvec_bcg%s",rmeth);
      |                                 ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_bcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:919:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 13 and 92 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function ‘Bvec_cg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:631:28: warning: ‘%s’ directive writing up to 79 bytes into a region of size 73 [-Wformat-overflow=]
  631 |         sprintf(rn,"Bvec_cg%s",rmeth);
      |                            ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_cg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:631:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 8 and 87 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function ‘Bvec_cg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:628:32: warning: ‘%s’ directive writing up to 79 bytes into a region of size 69 [-Wformat-overflow=]
  628 |         sprintf(rn,"--->Bvec_cg%s",rmeth);
      |                                ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_cg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:628:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 12 and 91 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c: In function ‘Bmat_galerkin’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:1018:36: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 5 and 14 [-Wformat-overflow=]
 1018 |                 sprintf(bname, "%s_%d%d", thee->name, p, q);
      |                                    ^~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:1018:32: note: directive argument in the range [0, 2147483646]
 1018 |                 sprintf(bname, "%s_%d%d", thee->name, p, q);
      |                                ^~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:1018:32: note: directive argument in the range [0, 2147483646]
In function ‘sprintf’,
    inlined from ‘Bmat_galerkin’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bmat.c:1018:17:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 31 bytes into a destination of size 15
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function ‘Bvec_cgnr’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:1422:30: warning: ‘%s’ directive writing up to 79 bytes into a region of size 71 [-Wformat-overflow=]
 1422 |         sprintf(rn,"Bvec_cgnr%s",rmeth);
      |                              ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_cgnr’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:1422:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 89 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function ‘Bvec_cgnr’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:1419:34: warning: ‘%s’ directive writing up to 79 bytes into a region of size 67 [-Wformat-overflow=]
 1419 |         sprintf(rn,"--->Bvec_cgnr%s",rmeth);
      |                                  ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_cgnr’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/bsolv.c:1419:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 14 and 93 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mat.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mat.c.o -MF CMakeFiles/mc.dir/bam/mat.c.o.d -o CMakeFiles/mc.dir/bam/mat.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/mat.c
[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matcopy.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matcopy.c.o -MF CMakeFiles/mc.dir/bam/matcopy.c.o.d -o CMakeFiles/mc.dir/bam/matcopy.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/matcopy.c
[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matln.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matln.c.o -MF CMakeFiles/mc.dir/bam/matln.c.o.d -o CMakeFiles/mc.dir/bam/matln.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/matln.c
[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mtool.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mtool.c.o -MF CMakeFiles/mc.dir/bam/mtool.c.o.d -o CMakeFiles/mc.dir/bam/mtool.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/mtool.c
[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/slu.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/slu.c.o -MF CMakeFiles/mc.dir/bam/slu.c.o.d -o CMakeFiles/mc.dir/bam/slu.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/slu.c
[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec.c.o -MF CMakeFiles/mc.dir/bam/vec.c.o.d -o CMakeFiles/mc.dir/bam/vec.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/vec.c
[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec3.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec3.c.o -MF CMakeFiles/mc.dir/bam/vec3.c.o.d -o CMakeFiles/mc.dir/bam/vec3.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/vec3.c
[ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/zslu.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/zslu.c.o -MF CMakeFiles/mc.dir/bam/zslu.c.o.d -o CMakeFiles/mc.dir/bam/zslu.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam/zslu.c
[ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/whb.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/whb.c.o -MF CMakeFiles/mc.dir/whb/whb.c.o.d -o CMakeFiles/mc.dir/whb/whb.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/whb.c
[ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/bvechb.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/bvechb.c.o -MF CMakeFiles/mc.dir/whb/bvechb.c.o.d -o CMakeFiles/mc.dir/whb/bvechb.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c
[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/hbtools.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/hbtools.c.o -MF CMakeFiles/mc.dir/whb/hbtools.c.o.d -o CMakeFiles/mc.dir/whb/hbtools.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/hbtools.c
[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/rcmat.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/rcmat.c.o -MF CMakeFiles/mc.dir/whb/rcmat.c.o.d -o CMakeFiles/mc.dir/whb/rcmat.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/rcmat.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function ‘Bvec_hcg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:267:29: warning: ‘%s’ directive writing up to 79 bytes into a region of size 72 [-Wformat-overflow=]
  267 |         sprintf(rn,"Bvec_hcg%s",rmeth);
      |                             ^~  ~~~~~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/mc/whb.h:50,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:34:
In function ‘sprintf’,
    inlined from ‘Bvec_hcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:267:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 9 and 88 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function ‘Bvec_hcg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:264:33: warning: ‘%s’ directive writing up to 79 bytes into a region of size 68 [-Wformat-overflow=]
  264 |         sprintf(rn,"--->Bvec_hcg%s",rmeth);
      |                                 ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_hcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:264:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 13 and 92 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function ‘Bvec_hbcg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:474:30: warning: ‘%s’ directive writing up to 79 bytes into a region of size 71 [-Wformat-overflow=]
  474 |         sprintf(rn,"Bvec_hbcg%s",rmeth);
      |                              ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_hbcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:474:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 89 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function ‘Bvec_hbcg’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:471:34: warning: ‘%s’ directive writing up to 79 bytes into a region of size 67 [-Wformat-overflow=]
  471 |         sprintf(rn,"--->Bvec_hbcg%s",rmeth);
      |                                  ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_hbcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/bvechb.c:471:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 14 and 93 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/hbtools.c: In function ‘Bvec_ctorPoint’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/hbtools.c:291:28: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 5 and 14 [-Wformat-overflow=]
  291 |         sprintf(bname, "%s_%d", thee->name, p);
      |                            ^~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/hbtools.c:291:24: note: directive argument in the range [0, 2147483646]
  291 |         sprintf(bname, "%s_%d", thee->name, p);
      |                        ^~~~~~~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/mc/whb.h:50,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/hbtools_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/hbtools.c:34:
In function ‘sprintf’,
    inlined from ‘Bvec_ctorPoint’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/hbtools.c:291:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 3 and 21 bytes into a destination of size 15
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/brcmat.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/brcmat.c.o -MF CMakeFiles/mc.dir/whb/brcmat.c.o.d -o CMakeFiles/mc.dir/whb/brcmat.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/brcmat.c
[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/subopt.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/subopt.c.o -MF CMakeFiles/mc.dir/whb/subopt.c.o.d -o CMakeFiles/mc.dir/whb/subopt.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c
[ 66%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/aprx.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/aprx.c.o -MF CMakeFiles/mc.dir/aprx/aprx.c.o.d -o CMakeFiles/mc.dir/aprx/aprx.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/aprx.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c: In function ‘Bvec_submethod’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:495:31: warning: ‘%s’ directive writing up to 79 bytes into a region of size 70 [-Wformat-overflow=]
  495 |         sprintf(rn,"Bvec_sfpcg%s",rmeth);
      |                               ^~  ~~~~~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/mc/whb.h:50,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:39:
In function ‘sprintf’,
    inlined from ‘Bvec_sfpcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:495:9,
    inlined from ‘Bvec_submethod’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:93:18:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 11 and 90 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c: In function ‘Bvec_submethod’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:492:35: warning: ‘%s’ directive writing up to 79 bytes into a region of size 66 [-Wformat-overflow=]
  492 |         sprintf(rn,"--->Bvec_sfpcg%s",rmeth);
      |                                   ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_sfpcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:492:9,
    inlined from ‘Bvec_submethod’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:93:18:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 15 and 94 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c: In function ‘Bvec_submethod’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:776:32: warning: ‘%s’ directive writing up to 79 bytes into a region of size 69 [-Wformat-overflow=]
  776 |         sprintf(rn,"Bvec_sfpbcg%s",rmeth);
      |                                ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_sfpbcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:776:9,
    inlined from ‘Bvec_submethod’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:102:18:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 12 and 91 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c: In function ‘Bvec_submethod’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:773:36: warning: ‘%s’ directive writing up to 79 bytes into a region of size 65 [-Wformat-overflow=]
  773 |         sprintf(rn,"--->Bvec_sfpbcg%s",rmeth);
      |                                    ^~  ~~~~~
In function ‘sprintf’,
    inlined from ‘Bvec_sfpbcg’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:773:9,
    inlined from ‘Bvec_submethod’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb/subopt.c:102:18:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 16 and 95 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 66%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/assem.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/assem.c.o -MF CMakeFiles/mc.dir/aprx/assem.c.o.d -o CMakeFiles/mc.dir/aprx/assem.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/assem.c
[ 66%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/bnode.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/bnode.c.o -MF CMakeFiles/mc.dir/aprx/bnode.c.o.d -o CMakeFiles/mc.dir/aprx/bnode.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/bnode.c
[ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/estim.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/estim.c.o -MF CMakeFiles/mc.dir/aprx/estim.c.o.d -o CMakeFiles/mc.dir/aprx/estim.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/estim.c
[ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/eval.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/eval.c.o -MF CMakeFiles/mc.dir/aprx/eval.c.o.d -o CMakeFiles/mc.dir/aprx/eval.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c
[ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/io.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/io.c.o -MF CMakeFiles/mc.dir/aprx/io.c.o.d -o CMakeFiles/mc.dir/aprx/io.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/io.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c: In function ‘Aprx_fe2fd’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c:368:40: warning: ‘__sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
  368 |             sprintf(filename, "f%dz.dat", block);
      |                                        ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/mc/aprx.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/aprx_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c:34:
In function ‘sprintf’,
    inlined from ‘Aprx_fe2fd’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c:368:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 8 and 18 bytes into a destination of size 7
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c: In function ‘Aprx_fe2fd’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c:366:40: warning: ‘__sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
  366 |             sprintf(filename, "f%dy.dat", block);
      |                                        ^
In function ‘sprintf’,
    inlined from ‘Aprx_fe2fd’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c:366:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 8 and 18 bytes into a destination of size 7
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c: In function ‘Aprx_fe2fd’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c:364:40: warning: ‘__sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
  364 |             sprintf(filename, "f%dx.dat", block);
      |                                        ^
In function ‘sprintf’,
    inlined from ‘Aprx_fe2fd’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/eval.c:364:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 8 and 18 bytes into a destination of size 7
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/node.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/node.c.o -MF CMakeFiles/mc.dir/aprx/node.c.o.d -o CMakeFiles/mc.dir/aprx/node.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/node.c
[ 68%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/parti.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/parti.c.o -MF CMakeFiles/mc.dir/aprx/parti.c.o.d -o CMakeFiles/mc.dir/aprx/parti.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/parti.c
[ 68%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/re.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/re.c.o -MF CMakeFiles/mc.dir/aprx/re.c.o.d -o CMakeFiles/mc.dir/aprx/re.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/re.c
[ 68%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/vel.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/vel.c.o -MF CMakeFiles/mc.dir/gem/vel.c.o.d -o CMakeFiles/mc.dir/gem/vel.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/vel.c
[ 69%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/ves.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/ves.c.o -MF CMakeFiles/mc.dir/gem/ves.c.o.d -o CMakeFiles/mc.dir/gem/ves.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/ves.c
[ 69%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gem.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gem.c.o -MF CMakeFiles/mc.dir/gem/gem.c.o.d -o CMakeFiles/mc.dir/gem/gem.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gem.c
[ 69%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemchk.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemchk.c.o -MF CMakeFiles/mc.dir/gem/gemchk.c.o.d -o CMakeFiles/mc.dir/gem/gemchk.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemchk.c
[ 69%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemdisp.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemdisp.c.o -MF CMakeFiles/mc.dir/gem/gemdisp.c.o.d -o CMakeFiles/mc.dir/gem/gemdisp.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c
[ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemg.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemg.c.o -MF CMakeFiles/mc.dir/gem/gemg.c.o.d -o CMakeFiles/mc.dir/gem/gemg.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemg.c
[ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemgen.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemgen.c.o -MF CMakeFiles/mc.dir/gem/gemgen.c.o.d -o CMakeFiles/mc.dir/gem/gemgen.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c: In function ‘Gem_delaunay’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: warning: ‘Gem_writeGV’ accessing 32 bytes in a region of size 24 [-Wstringop-overflow=]
  522 |     Gem_writeGV(thee,sock,0,0,0,1.0,0,defX);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: note: referencing argument 8 of type ‘double *[4]’
In file included from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gem_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c:34:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function ‘Gem_writeGV’
 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock,
      |               ^~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: warning: ‘Gem_writeGV’ accessing 32 bytes in a region of size 24 [-Wstringop-overflow=]
  659 |             Gem_writeGV(thee,sock,0,0,0,1.0,0,defX);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: note: referencing argument 8 of type ‘double *[4]’
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function ‘Gem_writeGV’
 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock,
      |               ^~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: warning: ‘Gem_writeGV’ accessing 32 bytes in a region of size 24 [-Wstringop-overflow=]
  743 |     Gem_writeGV(thee,sock,0,0,0,1.0,0,defX);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: note: referencing argument 8 of type ‘double *[4]’
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function ‘Gem_writeGV’
 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock,
      |               ^~~~~~~~~~~
[ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemio.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemio.c.o -MF CMakeFiles/mc.dir/gem/gemio.c.o.d -o CMakeFiles/mc.dir/gem/gemio.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemio.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c: In function ‘Gem_writeTEC’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c:1656:33: warning: ‘__sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
 1656 |         sprintf(str1,"TETRAHEDRA");
      |                                 ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/mc/gem.h:41,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gem_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c:34:
In function ‘sprintf’,
    inlined from ‘Gem_writeTEC’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c:1656:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 11 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c: In function ‘Gem_writeTEC’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c:1657:33: warning: ‘TETRAHEDRON’ directive writing 11 bytes into a region of size 10 [-Wformat-overflow=]
 1657 |         sprintf(str2,"TETRAHEDRON");
      |                       ~~~~~~~~~~^
In function ‘sprintf’,
    inlined from ‘Gem_writeTEC’ at /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemdisp.c:1657:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemref.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemref.c.o -MF CMakeFiles/mc.dir/gem/gemref.c.o.d -o CMakeFiles/mc.dir/gem/gemref.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemref.c
[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemunref.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemunref.c.o -MF CMakeFiles/mc.dir/gem/gemunref.c.o.d -o CMakeFiles/mc.dir/gem/gemunref.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemunref.c
[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemcube.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemcube.c.o -MF CMakeFiles/mc.dir/gem/gemcube.c.o.d -o CMakeFiles/mc.dir/gem/gemcube.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/gemcube.c
[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/pde/pde.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/pde/pde.c.o -MF CMakeFiles/mc.dir/pde/pde.c.o.d -o CMakeFiles/mc.dir/pde/pde.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde/pde.c
[ 72%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/am.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/am.c.o -MF CMakeFiles/mc.dir/nam/am.c.o.d -o CMakeFiles/mc.dir/nam/am.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam/am.c
[ 72%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/lsolv.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/lsolv.c.o -MF CMakeFiles/mc.dir/nam/lsolv.c.o.d -o CMakeFiles/mc.dir/nam/lsolv.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam/lsolv.c
[ 72%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/nsolv.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/nsolv.c.o -MF CMakeFiles/mc.dir/nam/nsolv.c.o.d -o CMakeFiles/mc.dir/nam/nsolv.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam/nsolv.c
[ 73%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/dyn.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/dyn.c.o -MF CMakeFiles/mc.dir/dyn/dyn.c.o.d -o CMakeFiles/mc.dir/dyn/dyn.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn/dyn.c
[ 73%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/svio.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/svio.c.o -MF CMakeFiles/mc.dir/dyn/svio.c.o.d -o CMakeFiles/mc.dir/dyn/svio.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn/svio.c
[ 73%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/mcsh/mcsh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/mcsh/mcsh.c.o -MF CMakeFiles/mc.dir/mcsh/mcsh.c.o.d -o CMakeFiles/mc.dir/mcsh/mcsh.c.o -c /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh.c
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh.c: In function ‘MCsh_builtIn’:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh.c:765:9: warning: ‘Gem_writeGEOM’ accessing 32 bytes in a region of size 24 [-Wstringop-overflow=]
  765 |         Gem_writeGEOM(thee->gm,
      |         ^~~~~~~~~~~~~~~~~~~~~~~
  766 |             sock,
      |             ~~~~~
  767 |             defKey,
      |             ~~~~~~~
  768 |             Vsh_getenvInt(thee->vsh,"CKEY"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  769 |             Vsh_getenvInt(thee->vsh,"DKEY"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  770 |             Vsh_getenvReal(thee->vsh,"GVAL"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  771 |             Vsh_getenvInt(thee->vsh,"FKEY"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  772 |             defX,
      |             ~~~~~
  773 |             "GV");
      |             ~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh.c:765:9: note: referencing argument 8 of type ‘double *[4]’
In file included from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx/mc/aprx.h:42,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam/mc/am.h:43,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam/mc/nam.h:36,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mc/mcsh.h:42,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh_p.h:37,
                 from /<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh.c:34:
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3036:15: note: in a call to function ‘Gem_writeGEOM’
 3036 | VEXTERNC void Gem_writeGEOM(Gem *thee, Vio *sock,
      |               ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh.c:810:9: warning: ‘Gem_writeGEOM’ accessing 32 bytes in a region of size 24 [-Wstringop-overflow=]
  810 |         Gem_writeGEOM(thee->gm,
      |         ^~~~~~~~~~~~~~~~~~~~~~~
  811 |             sock,
      |             ~~~~~
  812 |             defKey,
      |             ~~~~~~~
  813 |             Vsh_getenvInt(thee->vsh,"CKEY"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  814 |             Vsh_getenvInt(thee->vsh,"DKEY"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  815 |             Vsh_getenvReal(thee->vsh,"GVAL"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  816 |             Vsh_getenvInt(thee->vsh,"FKEY"),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  817 |             defX,
      |             ~~~~~
  818 |             "MATH");
      |             ~~~~~~~
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh/mcsh.c:810:9: note: referencing argument 8 of type ‘double *[4]’
/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3036:15: note: in a call to function ‘Gem_writeGEOM’
 3036 | VEXTERNC void Gem_writeGEOM(Gem *thee, Vio *sock,
      |               ^~~~~~~~~~~~~
[ 73%] Linking C shared library libmc.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mc.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libmc.so.1.9 -o libmc.so.1.9.3 CMakeFiles/mc.dir/base/mc_base.c.o CMakeFiles/mc.dir/bam/bmat.c.o CMakeFiles/mc.dir/bam/bsolv.c.o CMakeFiles/mc.dir/bam/bvec.c.o CMakeFiles/mc.dir/bam/mat.c.o CMakeFiles/mc.dir/bam/matcopy.c.o CMakeFiles/mc.dir/bam/matln.c.o CMakeFiles/mc.dir/bam/mtool.c.o CMakeFiles/mc.dir/bam/slu.c.o CMakeFiles/mc.dir/bam/vec.c.o CMakeFiles/mc.dir/bam/vec3.c.o CMakeFiles/mc.dir/bam/zslu.c.o CMakeFiles/mc.dir/whb/whb.c.o CMakeFiles/mc.dir/whb/bvechb.c.o CMakeFiles/mc.dir/whb/hbtools.c.o CMakeFiles/mc.dir/whb/rcmat.c.o CMakeFiles/mc.dir/whb/brcmat.c.o CMakeFiles/mc.dir/whb/subopt.c.o CMakeFiles/mc.dir/aprx/aprx.c.o CMakeFiles/mc.dir/aprx/assem.c.o CMakeFiles/mc.dir/aprx/bnode.c.o CMakeFiles/mc.dir/aprx/estim.c.o CMakeFiles/mc.dir/aprx/eval.c.o CMakeFiles/mc.dir/aprx/io.c.o CMakeFiles/mc.dir/aprx/node.c.o CMakeFiles/mc.dir/aprx/parti.c.o CMakeFiles/mc.dir/aprx/re.c.o CMakeFiles/mc.dir/gem/vel.c.o CMakeFiles/mc.dir/gem/ves.c.o CMakeFiles/mc.dir/gem/gem.c.o CMakeFiles/mc.dir/gem/gemchk.c.o CMakeFiles/mc.dir/gem/gemdisp.c.o CMakeFiles/mc.dir/gem/gemg.c.o CMakeFiles/mc.dir/gem/gemgen.c.o CMakeFiles/mc.dir/gem/gemio.c.o CMakeFiles/mc.dir/gem/gemref.c.o CMakeFiles/mc.dir/gem/gemunref.c.o CMakeFiles/mc.dir/gem/gemcube.c.o CMakeFiles/mc.dir/pde/pde.c.o CMakeFiles/mc.dir/nam/am.c.o CMakeFiles/mc.dir/nam/lsolv.c.o CMakeFiles/mc.dir/nam/nsolv.c.o CMakeFiles/mc.dir/dyn/dyn.c.o CMakeFiles/mc.dir/dyn/svio.c.o CMakeFiles/mc.dir/mcsh/mcsh.c.o  /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a -lmaloc ../../punc/src/libpunc.so.1.9.3 /usr/lib/aarch64-linux-gnu/libblas.so -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../punc/src/vf2c/libvf2c.so.1.9.3 ../../punc/src/cgcode/libcgcode.so.1.9.3 
In function ‘sprintf’,
    inlined from ‘Gem_writeTEC’ at /usr/src/apbs-3.4.1-5.1ubuntu2/debian/external_deps/fetk/mc/src/gem/gemdisp.c:1656:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: ‘__builtin___sprintf_chk’ writing 11 bytes into a region of size 10 overflows the destination [-Wstringop-overflow=]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^
In function ‘sprintf’,
    inlined from ‘Gem_writeTEC’ at /usr/src/apbs-3.4.1-5.1ubuntu2/debian/external_deps/fetk/mc/src/gem/gemdisp.c:1657:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: ‘__builtin___sprintf_chk’ writing 12 bytes into a region of size 10 overflows the destination [-Wstringop-overflow=]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^
[ 73%] Linking CXX shared library libgamer.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamer.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgamer.so.1.9 -o libgamer.so.1.9.3 CMakeFiles/gamer.dir/base/gamer_base.c.o CMakeFiles/gamer.dir/triangle/triangle.c.o CMakeFiles/gamer.dir/tetgen/predicates.cpp.o CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o CMakeFiles/gamer.dir/biom/CorrectNormals.C.o CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o CMakeFiles/gamer.dir/biom/MarchingCube.C.o CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o CMakeFiles/gamer.dir/biom/PDB2Volume.C.o CMakeFiles/gamer.dir/biom/ReadLattice.C.o CMakeFiles/gamer.dir/biom/ReadPDB.C.o CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o CMakeFiles/gamer.dir/biom/RegionGrowing.C.o CMakeFiles/gamer.dir/biom/SurfaceMesh.C.o CMakeFiles/gamer.dir/biom/SurfExtract.C.o CMakeFiles/gamer.dir/biom/SurfRefine.C.o CMakeFiles/gamer.dir/biom/SurfSmooth.C.o  -lmaloc 
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cmake -E cmake_symlink_library libmc.so.1.9.3 libmc.so.1.9 libmc.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 73%] Built target mc
make  -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend
make  -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/generic /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/pmgc /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 74%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildAd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/buildAd.c
[ 74%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildBd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/buildBd.c
[ 75%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -MF CMakeFiles/apbs_generic.dir/nosh.c.o.d -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /<<PKGBUILDDIR>>/src/generic/nosh.c
[ 75%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildGd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/buildGd.c
[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildPd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/buildPd.c
[ 76%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -MF CMakeFiles/apbs_generic.dir/mgparm.c.o.d -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /<<PKGBUILDDIR>>/src/generic/mgparm.c
[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o -MF CMakeFiles/apbs_pmgc.dir/cgd.c.o.d -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/cgd.c
[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o -MF CMakeFiles/apbs_pmgc.dir/gsd.c.o.d -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/gsd.c
[ 76%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -MF CMakeFiles/apbs_generic.dir/femparm.c.o.d -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /<<PKGBUILDDIR>>/src/generic/femparm.c
[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o -MF CMakeFiles/apbs_pmgc.dir/matvecd.c.o.d -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/matvecd.c
[ 76%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -MF CMakeFiles/apbs_generic.dir/pbamparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /<<PKGBUILDDIR>>/src/generic/pbamparm.c
[ 77%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -MF CMakeFiles/apbs_generic.dir/pbsamparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /<<PKGBUILDDIR>>/src/generic/pbsamparm.c
[ 77%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -MF CMakeFiles/apbs_generic.dir/pbeparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /<<PKGBUILDDIR>>/src/generic/pbeparm.c
[ 77%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -MF CMakeFiles/apbs_generic.dir/bemparm.c.o.d -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /<<PKGBUILDDIR>>/src/generic/bemparm.c
[ 78%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -MF CMakeFiles/apbs_generic.dir/geoflowparm.c.o.d -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /<<PKGBUILDDIR>>/src/generic/geoflowparm.c
[ 78%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -MF CMakeFiles/apbs_generic.dir/apolparm.c.o.d -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /<<PKGBUILDDIR>>/src/generic/apolparm.c
[ 78%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -MF CMakeFiles/apbs_generic.dir/vacc.c.o.d -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /<<PKGBUILDDIR>>/src/generic/vacc.c
[ 79%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgcsd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/mgcsd.c
[ 79%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/mgdrvd.c
[ 79%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/valist.c.o -MF CMakeFiles/apbs_generic.dir/valist.c.o.d -o CMakeFiles/apbs_generic.dir/valist.c.o -c /<<PKGBUILDDIR>>/src/generic/valist.c
[ 79%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgsubd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/mgsubd.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/cmake -E cmake_symlink_library libgamer.so.1.9.3 libgamer.so.1.9 libgamer.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 79%] Built target gamer
[ 79%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -MF CMakeFiles/apbs_pmgc.dir/mikpckd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/mikpckd.c
[ 80%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -MF CMakeFiles/apbs_generic.dir/vatom.c.o.d -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /<<PKGBUILDDIR>>/src/generic/vatom.c
[ 80%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -MF CMakeFiles/apbs_generic.dir/vpbe.c.o.d -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /<<PKGBUILDDIR>>/src/generic/vpbe.c
[ 81%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -MF CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/mlinpckd.c
[ 81%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o -MF CMakeFiles/apbs_pmgc.dir/mypdec.c.o.d -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /<<PKGBUILDDIR>>/src/pmgc/mypdec.c
[ 81%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o -MF CMakeFiles/apbs_pmgc.dir/newtond.c.o.d -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /<<PKGBUILDDIR>>/src/pmgc/newtond.c
[ 81%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -MF CMakeFiles/apbs_generic.dir/vcap.c.o.d -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /<<PKGBUILDDIR>>/src/generic/vcap.c
[ 82%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -MF CMakeFiles/apbs_generic.dir/vclist.c.o.d -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /<<PKGBUILDDIR>>/src/generic/vclist.c
[ 83%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -MF CMakeFiles/apbs_pmgc.dir/newdrvd.c.o.d -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/newdrvd.c
[ 83%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o -MF CMakeFiles/apbs_pmgc.dir/powerd.c.o.d -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/powerd.c
[ 83%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o -MF CMakeFiles/apbs_pmgc.dir/smoothd.c.o.d -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/smoothd.c
[ 83%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o -MF CMakeFiles/apbs_generic.dir/vstring.c.o.d -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /<<PKGBUILDDIR>>/src/generic/vstring.c
[ 83%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgfasd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /<<PKGBUILDDIR>>/src/pmgc/mgfasd.c
[ 83%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o -MF CMakeFiles/apbs_generic.dir/vparam.c.o.d -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /<<PKGBUILDDIR>>/src/generic/vparam.c
[ 83%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o -MF CMakeFiles/apbs_generic.dir/vgreen.c.o.d -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /<<PKGBUILDDIR>>/src/generic/vgreen.c
[ 84%] Linking C shared library libapbs_generic.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_generic.so.3 -o libapbs_generic.so.3 CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbamparm.c.o CMakeFiles/apbs_generic.dir/pbsamparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/bemparm.c.o CMakeFiles/apbs_generic.dir/geoflowparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o  ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 /usr/lib/aarch64-linux-gnu/libblas.so 
[ 85%] Linking C shared library libapbs_pmgc.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_pmgc.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_pmgc.so.3 -o libapbs_pmgc.so.3 CMakeFiles/apbs_pmgc.dir/buildAd.c.o CMakeFiles/apbs_pmgc.dir/buildBd.c.o CMakeFiles/apbs_pmgc.dir/buildGd.c.o CMakeFiles/apbs_pmgc.dir/buildPd.c.o CMakeFiles/apbs_pmgc.dir/cgd.c.o CMakeFiles/apbs_pmgc.dir/gsd.c.o CMakeFiles/apbs_pmgc.dir/matvecd.c.o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o CMakeFiles/apbs_pmgc.dir/mypdec.c.o CMakeFiles/apbs_pmgc.dir/newtond.c.o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o CMakeFiles/apbs_pmgc.dir/powerd.c.o CMakeFiles/apbs_pmgc.dir/smoothd.c.o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o  ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 /usr/lib/aarch64-linux-gnu/libblas.so 
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/generic && /usr/bin/cmake -E cmake_symlink_library libapbs_generic.so.3 libapbs_generic.so.3 libapbs_generic.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 85%] Built target apbs_generic
make  -f src/fem/CMakeFiles/apbs_fem.dir/build.make src/fem/CMakeFiles/apbs_fem.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/fem /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/fem /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/fem/CMakeFiles/apbs_fem.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f src/fem/CMakeFiles/apbs_fem.dir/build.make src/fem/CMakeFiles/apbs_fem.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 85%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vcsm.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/fem && /usr/bin/cc -Dapbs_fem_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/fem/CMakeFiles/apbs_fem.dir/vcsm.c.o -MF CMakeFiles/apbs_fem.dir/vcsm.c.o.d -o CMakeFiles/apbs_fem.dir/vcsm.c.o -c /<<PKGBUILDDIR>>/src/fem/vcsm.c
[ 86%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vfetk.c.o
[ 86%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vpee.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/fem && /usr/bin/cc -Dapbs_fem_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/fem/CMakeFiles/apbs_fem.dir/vfetk.c.o -MF CMakeFiles/apbs_fem.dir/vfetk.c.o.d -o CMakeFiles/apbs_fem.dir/vfetk.c.o -c /<<PKGBUILDDIR>>/src/fem/vfetk.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/fem && /usr/bin/cc -Dapbs_fem_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/fem/CMakeFiles/apbs_fem.dir/vpee.c.o -MF CMakeFiles/apbs_fem.dir/vpee.c.o.d -o CMakeFiles/apbs_fem.dir/vpee.c.o -c /<<PKGBUILDDIR>>/src/fem/vpee.c
/<<PKGBUILDDIR>>/src/fem/vfetk.c: In function ‘Vfetk_PDE_ctor2’:
/<<PKGBUILDDIR>>/src/fem/vfetk.c:1211:24: warning: assignment to ‘void (*)(struct sPDE *, int,  int,  double *, double *, double (*)[3])’ from incompatible pointer type ‘void (*)(PDE *, int,  int,  double *, double *)’ {aka ‘void (*)(struct sPDE *, int,  int,  double *, double *)’} [-Wincompatible-pointer-types]
 1211 |     thee->u_T          = Vfetk_PDE_u_T;
      |                        ^
/<<PKGBUILDDIR>>/src/fem/vfetk.c: In function ‘Bmat_printHB’:
/<<PKGBUILDDIR>>/src/fem/vfetk.c:1073:28: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1073 |     sprintf(ptrfmt,"(%dI%d)",nptrline,numZdigits+1);
      |                            ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/src/fem/vfetk.h:67,
                 from /<<PKGBUILDDIR>>/src/fem/vfetk.c:57:
In function ‘sprintf’,
    inlined from ‘Bmat_printHB’ at /<<PKGBUILDDIR>>/src/fem/vfetk.c:1073:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 18 bytes into a destination of size 17
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/fem/vfetk.c: In function ‘Bmat_printHB’:
/<<PKGBUILDDIR>>/src/fem/vfetk.c:1074:26: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 4 [-Wformat-overflow=]
 1074 |     sprintf(ptrfmtstr,"%%%dd",numZdigits+1);
      |                          ^~
/<<PKGBUILDDIR>>/src/fem/vfetk.c:1074:23: note: directive argument in the range [-2147483646, 2147483647]
 1074 |     sprintf(ptrfmtstr,"%%%dd",numZdigits+1);
      |                       ^~~~~~~
In function ‘sprintf’,
    inlined from ‘Bmat_printHB’ at /<<PKGBUILDDIR>>/src/fem/vfetk.c:1074:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 14 bytes into a destination of size 5
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/fem/vfetk.c: In function ‘Bmat_printHB’:
/<<PKGBUILDDIR>>/src/fem/vfetk.c:1075:28: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1075 |     sprintf(indfmt,"(%dI%d)",nindline,nrowdigits+1);
      |                            ^
In function ‘sprintf’,
    inlined from ‘Bmat_printHB’ at /<<PKGBUILDDIR>>/src/fem/vfetk.c:1075:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 18 bytes into a destination of size 17
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/fem/vfetk.c: In function ‘Bmat_printHB’:
/<<PKGBUILDDIR>>/src/fem/vfetk.c:1076:26: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 4 [-Wformat-overflow=]
 1076 |     sprintf(indfmtstr,"%%%dd",nrowdigits+1);
      |                          ^~
/<<PKGBUILDDIR>>/src/fem/vfetk.c:1076:23: note: directive argument in the range [-2147483646, 2147483647]
 1076 |     sprintf(indfmtstr,"%%%dd",nrowdigits+1);
      |                       ^~~~~~~
In function ‘sprintf’,
    inlined from ‘Bmat_printHB’ at /<<PKGBUILDDIR>>/src/fem/vfetk.c:1076:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 14 bytes into a destination of size 5
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 86%] Linking C shared library libapbs_fem.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/fem && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_fem.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_fem.so.3 -o libapbs_fem.so.3 CMakeFiles/apbs_fem.dir/vcsm.c.o CMakeFiles/apbs_fem.dir/vfetk.c.o CMakeFiles/apbs_fem.dir/vpee.c.o  -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp ../generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/fem && /usr/bin/cmake -E cmake_symlink_library libapbs_fem.so.3 libapbs_fem.so.3 libapbs_fem.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 86%] Built target apbs_fem
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cmake -E cmake_symlink_library libapbs_pmgc.so.3 libapbs_pmgc.so.3 libapbs_pmgc.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 86%] Built target apbs_pmgc
make  -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/mg /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o
[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o
[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o -MF CMakeFiles/apbs_mg.dir/vpmg.c.o.d -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /<<PKGBUILDDIR>>/src/mg/vpmg.c
[ 87%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -MF CMakeFiles/apbs_mg.dir/vmgrid.c.o.d -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /<<PKGBUILDDIR>>/src/mg/vmgrid.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o -MF CMakeFiles/apbs_mg.dir/vgrid.c.o.d -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /<<PKGBUILDDIR>>/src/mg/vgrid.c
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -MF CMakeFiles/apbs_mg.dir/vopot.c.o.d -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /<<PKGBUILDDIR>>/src/mg/vopot.c
/<<PKGBUILDDIR>>/src/mg/vgrid.c: In function ‘Vgrid_readDXBIN’:
/<<PKGBUILDDIR>>/src/mg/vgrid.c:853:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  853 |       fgets(tok, VMAX_BUFSIZE, fd);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o -MF CMakeFiles/apbs_mg.dir/vpmgp.c.o.d -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /<<PKGBUILDDIR>>/src/mg/vpmgp.c
/<<PKGBUILDDIR>>/src/mg/vgrid.c:831:7: warning: argument 1 null where non-null expected [-Wnonnull]
  831 |       fclose(fd);
      |       ^~~~~~~~~~
In file included from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/src/mg/vgrid.h:67,
                 from /<<PKGBUILDDIR>>/src/mg/vgrid.c:57:
/usr/include/stdio.h:184:12: note: in a call to function ‘fclose’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
[ 87%] Linking C shared library libapbs_mg.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_mg.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_mg.so.3 -o libapbs_mg.so.3 CMakeFiles/apbs_mg.dir/vgrid.c.o CMakeFiles/apbs_mg.dir/vmgrid.c.o CMakeFiles/apbs_mg.dir/vopot.c.o CMakeFiles/apbs_mg.dir/vpmg.c.o CMakeFiles/apbs_mg.dir/vpmgp.c.o  -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp ../generic/libapbs_generic.so.3 ../pmgc/libapbs_pmgc.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/mg && /usr/bin/cmake -E cmake_symlink_library libapbs_mg.so.3 libapbs_mg.so.3 libapbs_mg.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 87%] Built target apbs_mg
make  -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 87%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dapbs_routines_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC   -fopenmp -MD -MT src/CMakeFiles/apbs_routines.dir/routines.c.o -MF CMakeFiles/apbs_routines.dir/routines.c.o.d -o CMakeFiles/apbs_routines.dir/routines.c.o -c /<<PKGBUILDDIR>>/src/routines.c
/<<PKGBUILDDIR>>/src/routines.c: In function ‘initAPOL’:
/<<PKGBUILDDIR>>/src/routines.c:5046:20: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 5046 |         atomData = Vparam_getAtomData(param, "WAT", "OW");
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c:5046:20: note: referencing argument 2 of type ‘char[1024]’
/<<PKGBUILDDIR>>/src/routines.c:5046:20: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=]
/<<PKGBUILDDIR>>/src/routines.c:5046:20: note: referencing argument 3 of type ‘char[1024]’
In file included from /<<PKGBUILDDIR>>/src/generic/apolparm.h:73,
                 from /<<PKGBUILDDIR>>/src/generic/nosh.h:73,
                 from /<<PKGBUILDDIR>>/src/apbs.h:70,
                 from /<<PKGBUILDDIR>>/src/routines.h:64,
                 from /<<PKGBUILDDIR>>/src/routines.c:54:
/<<PKGBUILDDIR>>/src/generic/vparam.h:304:27: note: in a call to function ‘Vparam_getAtomData’
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c:5048:24: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 5048 |             atomData = Vparam_getAtomData(param, "WAT", "O");
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c:5048:24: note: referencing argument 2 of type ‘char[1024]’
/<<PKGBUILDDIR>>/src/routines.c:5048:24: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=]
/<<PKGBUILDDIR>>/src/routines.c:5048:24: note: referencing argument 3 of type ‘char[1024]’
/<<PKGBUILDDIR>>/src/generic/vparam.h:304:27: note: in a call to function ‘Vparam_getAtomData’
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writematMG’:
/<<PKGBUILDDIR>>/src/routines.c:2020:30: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2020 |         sprintf(outpath, "%s.%s", writematstem, "mat");
      |                              ^~                 ~~~~~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /<<PKGBUILDDIR>>/src/apbs.h:67:
In function ‘sprintf’,
    inlined from ‘writematMG’ at /<<PKGBUILDDIR>>/src/routines.c:2020:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataMG’:
/<<PKGBUILDDIR>>/src/routines.c:2937:34: warning: ‘%s’ directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2937 |             sprintf(outpath, "%s.%s", writestem, "mcsf");
      |                                  ^~              ~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /<<PKGBUILDDIR>>/src/routines.c:2937:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 1029 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataMG’:
/<<PKGBUILDDIR>>/src/routines.c:2963:34: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2963 |             sprintf(outpath, "%s.%s", writestem, "txt");
      |                                  ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /<<PKGBUILDDIR>>/src/routines.c:2963:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataMG’:
/<<PKGBUILDDIR>>/src/routines.c:2919:34: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2919 |             sprintf(outpath, "%s.%s", writestem, "dxbin");
      |                                  ^~              ~~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /<<PKGBUILDDIR>>/src/routines.c:2919:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataMG’:
/<<PKGBUILDDIR>>/src/routines.c:2954:34: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2954 |             sprintf(outpath, "%s.%s", writestem, "dx.gz");
      |                                  ^~              ~~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /<<PKGBUILDDIR>>/src/routines.c:2954:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataMG’:
/<<PKGBUILDDIR>>/src/routines.c:2944:34: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2944 |             sprintf(outpath, "%s.%s", writestem, "grd");
      |                                  ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /<<PKGBUILDDIR>>/src/routines.c:2944:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataMG’:
/<<PKGBUILDDIR>>/src/routines.c:2930:34: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2930 |             sprintf(outpath, "%s.%s", writestem, "ucd");
      |                                  ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /<<PKGBUILDDIR>>/src/routines.c:2930:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataMG’:
/<<PKGBUILDDIR>>/src/routines.c:2909:34: warning: ‘%s’ directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2909 |             sprintf(outpath, "%s.%s", writestem, "dx");
      |                                  ^~              ~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /<<PKGBUILDDIR>>/src/routines.c:2909:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataFE’:
/<<PKGBUILDDIR>>/src/routines.c:4893:34: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 4893 |             sprintf(outpath, "%s.%s", writestem, "ucd");
      |                                  ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataFE’ at /<<PKGBUILDDIR>>/src/routines.c:4893:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataFE’:
/<<PKGBUILDDIR>>/src/routines.c:4887:34: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 4887 |             sprintf(outpath, "%s.%s", writestem, "dxbin");
      |                                  ^~              ~~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataFE’ at /<<PKGBUILDDIR>>/src/routines.c:4887:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/routines.c: In function ‘writedataFE’:
/<<PKGBUILDDIR>>/src/routines.c:4880:34: warning: ‘%s’ directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 4880 |             sprintf(outpath, "%s.%s", writestem, "dx");
      |                                  ^~              ~~~~
In function ‘sprintf’,
    inlined from ‘writedataFE’ at /<<PKGBUILDDIR>>/src/routines.c:4880:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 88%] Linking C shared library libapbs_routines.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_routines.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_routines.so.3 -o libapbs_routines.so.3 CMakeFiles/apbs_routines.dir/routines.c.o  -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp mg/libapbs_mg.so.3 fem/libapbs_fem.so.3 pmgc/libapbs_pmgc.so.3 generic/libapbs_generic.so.3 ../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libapbs_routines.so.3 libapbs_routines.so.3 libapbs_routines.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 88%] Built target apbs_routines
make  -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend
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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/CMakeFiles/apbs.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tools/mesh /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake "--color="
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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tools/mesh /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake "--color="
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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tools/mesh /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake "--color="
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[ 89%] Building C object src/CMakeFiles/apbs.dir/main.c.o
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[ 89%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o
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[ 89%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc  -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG   -fopenmp -MD -MT tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o -MF CMakeFiles/dxmath.dir/dxmath.c.o.d -o CMakeFiles/dxmath.dir/dxmath.c.o -c /<<PKGBUILDDIR>>/tools/mesh/dxmath.c
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  319 |     Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__);
      |                                                                ^~~~~~~~
/<<PKGBUILDDIR>>/src/main.c:319:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
  319 |     Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__);
      |                                                                          ^~~~~~~~
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/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc  -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG   -fopenmp -MD -MT tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o -MF CMakeFiles/tensor2dx.dir/tensor2dx.c.o.d -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c
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/<<PKGBUILDDIR>>/tools/mesh/del2dx.c: In function ‘main’:
/<<PKGBUILDDIR>>/tools/mesh/del2dx.c:76:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   76 |         fread(&igrid, 1, sizeof(int), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/del2dx.c:89:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |         fread(buffer, 1, sizeof(char) * 10, pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/del2dx.c:97:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |         fread(data, tot_grid, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/del2dx.c:103:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |         fread(&scale, 1, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/del2dx.c:106:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  106 |         fread(oldmid, 3, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 97%] Built target similarity
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 98%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/manip && /usr/bin/cc  -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG   -fopenmp -MD -MT tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -MF CMakeFiles/coulomb.dir/coulomb.c.o.d -o CMakeFiles/coulomb.dir/coulomb.c.o -c /<<PKGBUILDDIR>>/tools/manip/coulomb.c
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c: In function ‘main’:
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c: In function ‘main’:
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:97:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |         fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   30 |     scanf("%s", flnm);
      |     ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   42 |     scanf("%s", newfile);
      |     ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   54 |     fscanf(inFile, "%s", title);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   57 |     fscanf(inFile, "%lf", &scale);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |     fscanf(inFile, "%lf", &dum2);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   63 |     fscanf(inFile, "%d", &grdflg);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |     fscanf(inFile, "%d", &idum2);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     fscanf(inFile, "%d", &one);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |     fscanf(inFile, "%d", &im);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fscanf(inFile, "%d", &jm);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   84 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |     fscanf(inFile, "%lf", &h);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   90 |     fscanf(inFile, "%lf", &ox);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   93 |     fscanf(inFile, "%lf", &oy);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fscanf(inFile, "%lf", &oz);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   99 |     fscanf(inFile, "%lf", &dum3);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |     fscanf(inFile, "%lf", &dum4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  105 |     fscanf(inFile, "%lf", &dum5);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     fscanf(inFile, "%lf", &dum6);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |     fscanf(inFile, "%lf", &dum7);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  114 |     fscanf(inFile, "%lf", &dum8);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  117 |     fscanf(inFile, "%d", &idum3);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  120 |     fscanf(inFile, "%d", &idum4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  125 |         fscanf(inFile, "%d", &kk);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  128 |         fscanf(inFile, "%d", &im);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |         fscanf(inFile, "%d", &jm);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |                 fscanf(inFile, "%lf", RAT3(grid, i, j, k));
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:98:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   98 |         fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:137:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  137 |                 fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:138:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |                 fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:139:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  139 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:140:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  140 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:155:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |                 fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:156:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  156 |                 fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:157:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  157 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/tools/mesh/tensor2dx.c:158:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  158 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 99%] Linking C executable ../bin/del2dx
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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/usr/bin/cc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -fcommon -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb  ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
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[100%] Built target _apbslib
[100%] Building CXX object tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/python-pybind && /usr/bin/c++ -Dapbs_pybind_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/include -I/usr/include/suitesparse -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/mc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/base -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/bam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/whb -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/aprx -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/gem -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/pde -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/nam -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/dyn -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/mc/src/mcsh -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/vf2c/punc -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/_deps/fetk-build/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src -I/<<PKGBUILDDIR>>/debian/external_deps/fetk/punc/src/base -isystem /usr/include/python3.12 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wpedantic -fpermissive -fPIC -O2 -g -DNDEBUG -std=gnu++17 -fPIC   -fopenmp -MD -MT tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o -MF CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o.d -o CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o -c /<<PKGBUILDDIR>>/tools/python-pybind/bind_valist.cpp
[100%] Linking CXX shared module apbs.cpython-312-aarch64-linux-gnu.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/tools/python-pybind && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_pybind.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/apbs-3.4.1-5.1ubuntu2 -Wdate-time -D_FORTIFY_SOURCE=3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wpedantic -fpermissive -fPIC -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared  -o apbs.cpython-312-aarch64-linux-gnu.so CMakeFiles/apbs_pybind.dir/module.cpp.o CMakeFiles/apbs_pybind.dir/bind_nosh.cpp.o CMakeFiles/apbs_pybind.dir/bind_vatom.cpp.o CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o  -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so /usr/lib/aarch64-linux-gnu/libblas.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/aarch64-linux-gnu/libarpack.so /usr/lib/aarch64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/aarch64-linux-gnu/libumfpack.so /usr/lib/aarch64-linux-gnu/libspqr.so /usr/lib/aarch64-linux-gnu/libcholmod.so /usr/lib/aarch64-linux-gnu/libccolamd.so /usr/lib/aarch64-linux-gnu/libcamd.so /usr/lib/aarch64-linux-gnu/libcolamd.so /usr/lib/aarch64-linux-gnu/libamd.so -lm -ldl /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/libsuitesparseconfig.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -fopenmp 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[100%] Built target apbs_pybind
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=cmake
   dh_testroot -a -O--buildsystem=cmake
   dh_prep -a -O--buildsystem=cmake
   dh_auto_install -a -O--buildsystem=cmake
	cd obj-aarch64-linux-gnu && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RELWITHDEBINFO"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/cmake/FindSuperLU.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/cmake/FindARPACK.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/cmake/FindSuiteSparse.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/cmake/FindAMD.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/cmake/FindUMFPACK.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/cmake/FindLAPACK.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/punc.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/punc_base.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/punccf.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/punc_base_p.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libpunc.so.1.9.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libpunc.so.1.9
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libpunc.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/varpack.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/vblas.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/vcgcode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/vlapack.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/vpmg.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/punc/vf2c.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libvf2c.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libcgcode.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gamer/gamer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gamer/gamer_base.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gamer/triangle.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gamer/tetgen.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gamer/biom.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libgamer.so.1.9.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libgamer.so.1.9
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libgamer.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/mc_base.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/mc.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/bam.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/bmat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/bvec.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/mat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/mtool.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/slu.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/vec.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/vec3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/zslu.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/whb.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/aprx.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/bnode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/node.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/re.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/gem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/vel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/ves.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/pde.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/am.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/nam.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/dyn.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mc/mcsh.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libmc.so.1.9.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libmc.so.1.9
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libmc.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_routines.so.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_routines.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/apbs/apbs.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/apbs/routines.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/nosh.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/mgparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/femparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/pbamparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/pbsamparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/pbeparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/bemparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/geoflowparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/apolparm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vacc.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/valist.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vatom.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vpbe.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vcap.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vclist.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vstring.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vparam.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vgreen.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vmatrix.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vhal.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/generic/vunit.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_generic.so.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_generic.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/buildAd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/buildBd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/buildGd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/buildPd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/cgd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/gsd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/matvecd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/mgcsd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/mgdrvd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/mgsubd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/mikpckd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/mlinpckd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/mypdec.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/newtond.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/newdrvd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/powerd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/smoothd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pmgc/mgfasd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_pmgc.so.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_pmgc.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mg/vgrid.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mg/vmgrid.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mg/vopot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mg/vpmg.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/mg/vpmgp.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_mg.so.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_mg.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/fem/vcsm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/fem/vfetk.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/fem/vpee.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_fem.so.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libapbs_fem.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/apbs.cpython-312-aarch64-linux-gnu.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/toy_electrostatic.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/pos_1.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/pos_2.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/toy_dynamics.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/neg_1.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/pos_charge.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/neg_2.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/1a63.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/toy_energyforce.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/neg_charge.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/1a63.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/neg_3.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbam/pos_3.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.pdb.exam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.dat.exam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.inp.exam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.out.orig.exam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/acetate.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/apbs-mol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/apbs-smol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/proton.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ionize/acetic-acid.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly.vert
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_electrostatic.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_2_1.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_cg.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_1_1.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_2_2.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_dynamics.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_cg2.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_1_2.xyz
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/msms
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/msms/gly_electrostatic.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/msms/gly_msms.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_energyforce.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc/fas2.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc/param.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc/achbp.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc/apbs.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc/apbs-PDB.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/misc/mache.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/pentane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/parm.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/butane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/propane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/apbs-forces.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/force.result
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/2-methylbutane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/isobutane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/alkanes.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/ethane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/cyclopentane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/cyclohexane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/hexane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/mol.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/methane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/alkanes/neopentane.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/apbs_dx.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/PDB
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/PDB/model_outNpep.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/PDB/model_outNB.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/PDB/model_outBoxB19.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/model_outBoxB19.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/template.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/run_apdx_files.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/test.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/postprocess.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/model_outNpep.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/model_outNB.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/fit.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/protein-rna/dxmath.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-complex.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-smol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-complex.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-smol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-min.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.inp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.log
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-mol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.inp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.log
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/dss-min.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-mol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-min.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/FKBP/dmso-min.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.dat.exam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.out.orig.exam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.inp.exam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/apbs-mol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/apbs-smol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/methoxide.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/solv/methanol.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/bx6_7_lig_apbs.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd2-bin.out
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd2-lig.out
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd1-apo.out
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd1-lig.out
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd1-bin.out
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd2-apo.out
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/README
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/bx6_7_bin_apbs.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-smol-surf.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-smol-vdw.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/bx6_7_apo_apbs.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-mol-vdw.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-mol-surf.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-12.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-8.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Run_membrane-helix.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Apbs_dummy.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Apbs_solv-TEMPLATE.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-0.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/draw_membrane2.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-4.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-16.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/helix/Apbs_dummy-TEMPLATE.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-mol-auto.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/prot3.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/prot4.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/nuc.3-4.inp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/single.inp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/srsrf.dot
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/aheall-atom.charmm.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/nuc.3-4.full.log
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/mol1.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/mol2.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-smol-parallel.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-smol-auto.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/mesh.m
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/complex.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-mol-parallel.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf2.err
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf1.qcd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf.inp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.err
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.inp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf.log
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/srsrf.dot
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.out
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf2.qcd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/hca.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/apbs-mol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/mesh.m
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/complex.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/apbs-smol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/hca-bind/acet.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars/barnase.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars/barn_bars_electro.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars/barstar.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/mol1.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/mol4.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_3.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/mol0.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/mol2.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_2.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_2.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/apbs.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_3.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_4.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/point-pmf-0.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/mol3.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_1.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/runme.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/energy.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_1.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_4.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/run_selected_examples.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/parm.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/apolarforces
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/complex.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/polarforces
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/ion-pmf.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/runme.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-pmf/ion-pmf.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/lys1_charges.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_3.face
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_1.face
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_2.vert
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1.vert
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_stern.vert
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_1.vert
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_2.face
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_3.vert
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1_stern.face
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/geometry/Lys1.face
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/lys.config
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys/lys.param
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/pygbe/lys.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/1a63_NanoShaper_SES.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/451c_order1.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins/twob.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins/1a63.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins/451c.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins/1ajj.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins/twob2.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins/1bbl.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/test_proteins/oneb.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/451c_order5.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem/1a63_NanoShaper_Skin.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.log
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/491.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.inp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.e2.log
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-mol-pdiel12.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/491.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-smol-pdiel12.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-smol-pdiel2.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/small491.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/complex.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-mol-pdiel2.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/1d30_monomer1.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/1d30_monomer2.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer1.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer2.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins/1d30.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-binding-energy/1d30.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-mol-auto.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/parm.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apolarforces
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-forces.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/pmf.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-mol-fem-extmesh.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-smol-fem.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/polarforces
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-smol-parallel.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-smol-auto.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/mesh.m
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/ion.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-mol-fem.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-apolar.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/born/apbs-mol-parallel.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/run_examples.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/glycerol.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/gly.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/1a63.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/imidazole_zap.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/imidazole.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/1a63.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/geoflow/gly.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/ASH66.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-ASH66.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-noASH66.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/ASP66.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/ASH66.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-ASH66.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-noASP66.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/ASP66.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-ASP66.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-noASH66.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-ASP66.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-noASP66.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests/apbs_check_intermediate_energies.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests/apbs_logger.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests/apbs_check_results.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests/test_cases.cfg
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests/apbs_check_forces.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tests/apbs_tester.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/github
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/github/release-data.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/github/getReleases.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/bind_valist.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/module.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/bind_vatom.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/CMakeLists.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/bind_constants.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/bind_nosh.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/bind_valist.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/bind_vatom.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python-pybind/bind_nosh.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/apbslib_wrap.doc
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/apbslib.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/vgrid.i
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/Makefile.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/mergedx.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/vgridlib.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/vgrid.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/Makefile.am
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/Makefile
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/average.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/read.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/vgrid/README
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/main.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/Makefile.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/apbs.in
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/apbslib.i
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/ion.pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/CMakeLists.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/Makefile.am
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/Makefile
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/noinput.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/python/README
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/manip
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/manip/inputgen.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/manip/born.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/manip/coulomb.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/manip/CMakeLists.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/manip/psize.py
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/qcd2pqr.awk
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/WHATIF2AMBER.sed
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/vparam
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/vparam/vparam-amber-parm94.xml
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/vparam/vparam-amber-parm94.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/weiner86-param.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/amber2uhbd.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/c-alpha.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/amber-param.dat
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/conversion/amber2charmm.sh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.net
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.cm
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.cm
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.net
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.cfg
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.cfg
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.cfg
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.net
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.cfg
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.net
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/README.md
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/CMakeLists.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/tensor2dx.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/dxmath.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/dx2mol.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/mergedx.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/smooth.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/uhbd_asc2bin.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/value.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/del2dx.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/mgmesh.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/mergedx2.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/benchmark.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/similarity.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/CMakeLists.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/multivalue.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/analysis.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/mesh/dx2uhbd.c
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/benchmark
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/dxmath
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/mergedx2
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/mgmesh
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/value
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/dx2uhbd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/del2dx
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/tensor2dx
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/analysis
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/coulomb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/uhbd_asc2bin
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/dx2mol
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/mergedx
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/smooth
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/multivalue
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/similarity
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/apbs/tools/bin/born
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
   debian/rules execute_after_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
(cd tests; PATH=/<<PKGBUILDDIR>>/debian/tmp/usr/bin:${PATH} LD_LIBRARY_PATH=/<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu:${LD_LIBRARY_PATH} PYTHONPATH=${PYTHONPATH}:/<<PKGBUILDDIR>>/tools/manip python3 apbs_tester.py -c test_cases.cfg; rm -rf __pycache__)
TESTING WITH BINARY_NAME:apbs
START_DIR:/<<PKGBUILDDIR>>/build
--------------------------------------------------------------------------------
Testing forces from apbs-forces.in

Checking forces for input file apbs-forces.inChecking Polar ForcesChecking Apolar ForcesElapsed time: 0.002195 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-auto.in

CHECKING:/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
NOTE: Using apbs binary:/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
Testing all sections
The following sections will be tested: born, actin-dimer-auto, alkanes, FKBP, hca-bind, ionize, ion-pmf, pka-lig, point-pmf, solv
================================================================================
Running tests for born section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-auto.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-auto.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.607073836227E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.200266567971E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to potential.dx.gz
  Total electrostatic energy = 4.732245131587E+03 kJ/mol
  Calculating forces...
  Writing potential to potential-PE0.dx.gz
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.190871482831E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.430874049735E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.962018684215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -2.297735526282E+02 kJ/mol
  Global net ELEC energy = -2.297735526282E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.607073836227e+02, 9.607073836227e+02)
*** PASSED ***
Testing computed result against expected result (2.200266567971e+03, 2.200266567971e+03)
*** PASSED ***
Testing computed result against expected result (4.732245131587e+03, 4.732245131587e+03)
*** PASSED ***
Testing computed result against expected result (1.190871482831e+03, 1.190871482831e+03)
*** PASSED ***
Testing computed result against expected result (2.430874049735e+03, 2.430874049735e+03)
*** PASSED ***
Testing computed result against expected result (4.962018684215e+03, 4.962018684215e+03)
*** PASSED ***
Testing computed result against expected result (-2.297735526282e+02, -2.297735411962e+02)
*** PASSED ***
Elapsed time: 3.257479 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-auto.in

Checking for intermediate energies in input file apbs-mol-auto.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [960.7073836227, 2200.266567971, 4732.245131587, 1190.871482831, 2430.874049735, 4962.018684215, -229.7735526282]
EXPECTED: ['9.607073836227E+02', '2.2002665679710E+03', '4.732245131587E+03', '1.190871482831E+03', '2.4308740497350E+03', '4.962018684215E+03', '-2.297735411962E+02']
COMPUTED RESULT 960.7073836227
COMPUTED RESULT 2200.266567971
COMPUTED RESULT 4732.245131587
COMPUTED RESULT 1190.871482831
COMPUTED RESULT 2430.874049735
COMPUTED RESULT 4962.018684215
COMPUTED RESULT -229.7735526282
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-auto.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-auto.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.532928767450E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.201243880085E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.733006258977E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.190871482831E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.430874049735E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.962018684215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -2.290124252387E+02 kJ/mol
  Global net ELEC energy = -2.290124252387E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.532928767450e+02, 9.532928767450e+02)
*** PASSED ***
Testing computed result against expected result (2.201243880085e+03, 2.201243880085e+03)
*** PASSED ***
Testing computed result against expected result (4.733006258977e+03, 4.733006258977e+03)
*** PASSED ***
Testing computed result against expected result (1.190871482831e+03, 1.190871482831e+03)
*** PASSED ***
Testing computed result against expected result (2.430874049735e+03, 2.430874049735e+03)
*** PASSED ***
Testing computed result against expected result (4.962018684215e+03, 4.962018684215e+03)
*** PASSED ***
Testing computed result against expected result (-2.290124252387e+02, -2.290124171992e+02)
*** PASSED ***
Elapsed time: 3.052151 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-parallel.in

Splitting the input file into 4 separate files using the inputgen utility

Checking for intermediate energies in input file apbs-smol-auto.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [953.292876745, 2201.243880085, 4733.006258977, 1190.871482831, 2430.874049735, 4962.018684215, -229.0124252387]
EXPECTED: ['9.532928767450E+02', '2.2012438800850E+03', '4.733006258977E+03', '1.190871482831E+03', '2.4308740497350E+03', '4.962018684215E+03', '-2.290124171992E+02']
COMPUTED RESULT 953.292876745
COMPUTED RESULT 2201.243880085
COMPUTED RESULT 4733.006258977
COMPUTED RESULT 1190.871482831
COMPUTED RESULT 2430.874049735
COMPUTED RESULT 4962.018684215
COMPUTED RESULT -229.0124252387
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-parallel-PE0.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-parallel-PE0.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459022E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142935592471E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485255308186E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.761864094552E+01 kJ/mol
  Global net ELEC energy = -5.761864094552E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 0 results:
  2.401768459022e+02
  8.142935592471e+02
  1.485255308186e+03
  2.977178707009e+02
  8.799304557588e+02
  1.542873949131e+03
  -5.761864094552e+01

Checking for intermediate energies in input file apbs-mol-parallel-PE0.out
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-parallel-PE1.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-parallel-PE1.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459022E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142778312125E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485246667424E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.762728170718E+01 kJ/mol
  Global net ELEC energy = -5.762728170718E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 1 results:
  2.401768459022e+02
  8.142778312125e+02
  1.485246667424e+03
  2.977178707009e+02
  8.799304557588e+02
  1.542873949131e+03
  -5.762728170718e+01

Checking for intermediate energies in input file apbs-mol-parallel-PE1.out
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-parallel-PE2.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-parallel-PE2.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459091E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142935605695E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485255306569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.761864257239E+01 kJ/mol
  Global net ELEC energy = -5.761864257239E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 2 results:
  2.401768459091e+02
  8.142935605695e+02
  1.485255306569e+03
  2.977178707146e+02
  8.799304557596e+02
  1.542873949141e+03
  -5.761864257239e+01

Checking for intermediate energies in input file apbs-mol-parallel-PE2.out
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-parallel-PE3.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-parallel-PE3.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459091E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142778325440E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485246665692E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.762728344953E+01 kJ/mol
  Global net ELEC energy = -5.762728344953E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 3 results:
  2.401768459091e+02
  8.142778325440e+02
  1.485246665692e+03
  2.977178707146e+02
  8.799304557596e+02
  1.542873949141e+03
  -5.762728344953e+01

Testing computed result against expected result (9.607073836226e+02, 9.607073836226e+02)
*** PASSED ***
Testing computed result against expected result (3.257142783573e+03, 3.257142783573e+03)
*** PASSED ***
Testing computed result against expected result (5.941003947871e+03, 5.941003947871e+03)
*** PASSED ***
Testing computed result against expected result (1.190871482831e+03, 1.190871482831e+03)
*** PASSED ***
Testing computed result against expected result (3.519721823037e+03, 3.519721823037e+03)
*** PASSED ***
Testing computed result against expected result (6.171495796544e+03, 6.171495796544e+03)
*** PASSED ***
Testing computed result against expected result (-2.304918486746e+02, -2.304918086635e+02)
*** PASSED ***
Elapsed time: 14.518348 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-parallel.in

Splitting the input file into 4 separate files using the inputgen utility

Checking for intermediate energies in input file apbs-mol-parallel-PE3.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [960.7073836226, 3257.1427835730997, 5941.0039478710005, 1190.8714828309999, 3519.7218230368003, 6171.495796544, -230.49184867462003]
EXPECTED: ['9.607073836226E+02', '3.2571427835732E+03', '5.941003947871E+03', '1.190871482831E+03', '3.5197218230368E+03', '6.171495796544E+03', '-2.304918086635E+02']
COMPUTED RESULT 960.7073836226
COMPUTED RESULT 3257.1427835730997
COMPUTED RESULT 5941.0039478710005
COMPUTED RESULT 1190.8714828309999
COMPUTED RESULT 3519.7218230368003
COMPUTED RESULT 6171.495796544
COMPUTED RESULT -230.49184867462003
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-parallel-PE0.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-parallel-PE0.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191816E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145369591602E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485524998001E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734895113069E+01 kJ/mol
  Global net ELEC energy = -5.734895113069E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 0 results:
  2.383232191816e+02
  8.145369591602e+02
  1.485524998001e+03
  2.977178707009e+02
  8.799304557588e+02
  1.542873949131e+03
  -5.734895113069e+01

Checking for intermediate energies in input file apbs-smol-parallel-PE0.out
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-parallel-PE1.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-parallel-PE1.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191816E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145419898332E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485529328612E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734462051928E+01 kJ/mol
  Global net ELEC energy = -5.734462051928E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 1 results:
  2.383232191816e+02
  8.145419898332e+02
  1.485529328612e+03
  2.977178707009e+02
  8.799304557588e+02
  1.542873949131e+03
  -5.734462051928e+01

Checking for intermediate energies in input file apbs-smol-parallel-PE1.out
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-parallel-PE2.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-parallel-PE2.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191909E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145369593489E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485524997676E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734895146550E+01 kJ/mol
  Global net ELEC energy = -5.734895146550E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 2 results:
  2.383232191909e+02
  8.145369593489e+02
  1.485524997676e+03
  2.977178707146e+02
  8.799304557596e+02
  1.542873949141e+03
  -5.734895146550e+01

Checking for intermediate energies in input file apbs-smol-parallel-PE2.out
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-parallel-PE3.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-parallel-PE3.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from ion.pqr.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191909E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145419900310E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485529328301E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734462084052E+01 kJ/mol
  Global net ELEC energy = -5.734462084052E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Processor 3 results:
  2.383232191909e+02
  8.145419900310e+02
  1.485529328301e+03
  2.977178707146e+02
  8.799304557596e+02
  1.542873949141e+03
  -5.734462084052e+01

Testing computed result against expected result (9.532928767450e+02, 9.532928767450e+02)
*** PASSED ***
Testing computed result against expected result (3.258157898373e+03, 3.258157898373e+03)
*** PASSED ***
Testing computed result against expected result (5.942108652590e+03, 5.942108652590e+03)
*** PASSED ***
Testing computed result against expected result (1.190871482831e+03, 1.190871482831e+03)
*** PASSED ***
Testing computed result against expected result (3.519721823037e+03, 3.519721823037e+03)
*** PASSED ***
Testing computed result against expected result (6.171495796544e+03, 6.171495796544e+03)
*** PASSED ***
Testing computed result against expected result (-2.293871439560e+02, -2.293871354771e+02)
*** PASSED ***
Elapsed time: 14.140149 seconds
--------------------------------------------------------------------------------
Total elapsed time: 34.970322 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-auto.in

Checking for intermediate energies in input file apbs-smol-parallel-PE3.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [953.292876745, 3258.1578983732998, 5942.108652589999, 1190.8714828309999, 3519.7218230368003, 6171.495796544, -229.38714395599]
EXPECTED: ['9.532928767450E+02', '3.2581578983733E+03', '5.942108652590E+03', '1.190871482831E+03', '3.5197218230368E+03', '6.171495796544E+03', '-2.293871354771E+02']
COMPUTED RESULT 953.292876745
COMPUTED RESULT 3258.1578983732998
COMPUTED RESULT 5942.108652589999
COMPUTED RESULT 1190.8714828309999
COMPUTED RESULT 3519.7218230368003
COMPUTED RESULT 6171.495796544
COMPUTED RESULT -229.38714395599
Running tests for actin-dimer-auto section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-auto.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-auto.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 1028.322 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.527617850342E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.919510754196E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.527671844880E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.915468859278E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.056317807611E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2069.492 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.836028296532E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 2 (mol2) - 1 (mol1) end
  Local net energy (PE 0) = 1.048683058621E+02 kJ/mol
  Global net ELEC energy = 1.048683058621E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 2069.492 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.527617850342e+05, 1.527617850342e+05)
*** PASSED ***
Testing computed result against expected result (2.919510754196e+05, 2.919510754196e+05)
*** PASSED ***
Testing computed result against expected result (1.527671844880e+05, 1.527671844880e+05)
*** PASSED ***
Testing computed result against expected result (2.915468859278e+05, 2.915468859278e+05)
*** PASSED ***
Testing computed result against expected result (3.056317807611e+05, 3.056317807611e+05)
*** PASSED ***
Testing computed result against expected result (5.836028296532e+05, 5.836028296532e+05)
*** PASSED ***
Testing computed result against expected result (1.048683058621e+02, 1.048683060915e+02)
*** PASSED ***
Elapsed time: 202.132398 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-auto.in

Checking for intermediate energies in input file apbs-mol-auto.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [152761.7850342, 291951.0754196, 152767.184488, 291546.8859278, 305631.7807611, 583602.8296532, 104.8683058621]
EXPECTED: ['1.52761785034200E+05', '2.91951075419600E+05', '1.52767184488000E+05', '2.91546885927800E+05', '3.0563178076110E+05', '5.8360282965320E+05', '1.048683060915E+02']
COMPUTED RESULT 152761.7850342
COMPUTED RESULT 291951.0754196
COMPUTED RESULT 152767.184488
COMPUTED RESULT 291546.8859278
COMPUTED RESULT 305631.7807611
COMPUTED RESULT 583602.8296532
COMPUTED RESULT 104.8683058621
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-auto.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-auto.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 1028.322 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.528632421825E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.920618662320E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.529297900572E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.916592202835E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.059244262535E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2069.492 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.838306706232E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 2 (mol2) - 1 (mol1) end
  Local net energy (PE 0) = 1.095841077688E+02 kJ/mol
  Global net ELEC energy = 1.095841077688E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 2069.492 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.528632421825e+05, 1.528632421825e+05)
*** PASSED ***
Testing computed result against expected result (2.920618662320e+05, 2.920618662320e+05)
*** PASSED ***
Testing computed result against expected result (1.529297900572e+05, 1.529297900572e+05)
*** PASSED ***
Testing computed result against expected result (2.916592202835e+05, 2.916592202835e+05)
*** PASSED ***
Testing computed result against expected result (3.059244262535e+05, 3.059244262535e+05)
*** PASSED ***
Testing computed result against expected result (5.838306706232e+05, 5.838306706232e+05)
*** PASSED ***
Testing computed result against expected result (1.095841077688e+02, 1.095841074454e+02)
*** PASSED ***
Elapsed time: 164.271372 seconds
--------------------------------------------------------------------------------
Total elapsed time: 366.40377 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file alkanes.in

Checking for intermediate energies in input file apbs-smol-auto.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [152863.2421825, 292061.866232, 152929.7900572, 291659.2202835, 305924.4262535, 583830.6706232, 109.5841077688]
EXPECTED: ['1.52863242182500E+05', '2.92061866232000E+05', '1.52929790057200E+05', '2.91659220283500E+05', '3.0592442625350E+05', '5.8383067062320E+05', '1.095841074454E+02']
COMPUTED RESULT 152863.2421825
COMPUTED RESULT 292061.866232
COMPUTED RESULT 152929.7900572
COMPUTED RESULT 291659.2202835
COMPUTED RESULT 305924.4262535
COMPUTED RESULT 583830.6706232
COMPUTED RESULT 109.5841077688
Running tests for alkanes section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   alkanes.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'alkanes.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file alkanes.in...
rank 0 size 1...
Parsed input file.
Reading parameter data from parm.dat.
Got paths for 11 molecules
Reading PDB-format atom data from 2-methylbutane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 4.33e+00 e
Reading PDB-format atom data from butane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (3.917e+00, 7.025e-01, -8.575e+00)
  Net charge 3.51e+00 e
Reading PDB-format atom data from cyclohexane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (1.123e+00, 5.880e-01, 7.680e-01)
  Net charge 4.93e+00 e
Reading PDB-format atom data from cyclopentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  13 atoms
  Centered at (1.320e+00, 5.255e-01, 1.289e+00)
  Net charge 3.88e+00 e
Reading PDB-format atom data from ethane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  8 atoms
  Centered at (2.210e-01, -2.100e-02, 7.650e-01)
  Net charge 1.87e+00 e
Reading PDB-format atom data from hexane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  20 atoms
  Centered at (4.951e+00, -9.500e-03, -8.406e+00)
  Net charge 5.16e+00 e
Reading PDB-format atom data from isobutane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.859e+01, 1.864e+01, 1.921e+01)
  Net charge 3.51e+00 e
Reading PDB-format atom data from methane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5 atoms
  Centered at (1.803e+01, 1.779e+01, 1.782e+01)
  Net charge 1.05e+00 e
Reading PDB-format atom data from neopentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (1.867e+01, 1.894e+01, 1.920e+01)
  Net charge 4.33e+00 e
Reading PDB-format atom data from pentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (4.460e+00, 1.615e-01, -8.566e+00)
  Net charge 4.33e+00 e
Reading PDB-format atom data from propane.pdb.
  11 atoms
  Centered at (1.836e+01, 1.896e+01, 1.861e+01)
  Net charge 2.69e+00 e
Preparing to run 11 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated-2-methylbutane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.815624614267E+00
  SASA for atom 1: 0.000000000000E+00
  SASA for atom 2: 6.122920124655E-01
  SASA for atom 3: 3.957497153740E+00
  SASA for atom 4: 4.308445014544E+00
  SASA for atom 5: 1.843264951960E+01
  SASA for atom 6: 1.837011296483E+01
  SASA for atom 7: 1.666599184724E+01
  SASA for atom 8: 1.480031796315E+01
  SASA for atom 9: 1.603020354037E+01
  SASA for atom 10: 1.473778140838E+01
  SASA for atom 11: 1.611879699297E+01
  SASA for atom 12: 1.810954398660E+01
  SASA for atom 13: 1.420100931324E+01
  SASA for atom 14: 1.437298483886E+01
  SASA for atom 15: 1.814081226399E+01
  SASA for atom 16: 2.152820898091E+01

Total solvent accessible surface area: 214.202 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.243280922127E-02
  Surface tension*area energy for atom 1: 0.000000000000E+00
  Surface tension*area energy for atom 2: 5.204482105957E-03
  Surface tension*area energy for atom 3: 3.363872580679E-02
  Surface tension*area energy for atom 4: 3.662178262362E-02
  Surface tension*area energy for atom 5: 1.566775209166E-01
  Surface tension*area energy for atom 6: 1.561459602010E-01
  Surface tension*area energy for atom 7: 1.416609307015E-01
  Surface tension*area energy for atom 8: 1.258027026868E-01
  Surface tension*area energy for atom 9: 1.362567300932E-01
  Surface tension*area energy for atom 10: 1.252711419712E-01
  Surface tension*area energy for atom 11: 1.370097744402E-01
  Surface tension*area energy for atom 12: 1.539311238861E-01
  Surface tension*area energy for atom 13: 1.207085791625E-01
  Surface tension*area energy for atom 14: 1.221703711303E-01
  Surface tension*area energy for atom 15: 1.541969042439E-01
  Surface tension*area energy for atom 16: 1.829897763377E-01

Total surface tension energy: 1.82072 kJ/mol

Total solvent accessible volume: 253.665 A^3

Total pressure*volume energy: 60.7274 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.271287875274E+00
  WCA energy for atom 1: -5.600872869478E+00
  WCA energy for atom 2: -5.773775123943E+00
  WCA energy for atom 3: -6.072801488986E+00
  WCA energy for atom 4: -6.378470721845E+00
  WCA energy for atom 5: -1.573474558351E+00
  WCA energy for atom 6: -1.582338715648E+00
  WCA energy for atom 7: -1.504044838266E+00
  WCA energy for atom 8: -1.351002262819E+00
  WCA energy for atom 9: -1.437367175239E+00
  WCA energy for atom 10: -1.384626257493E+00
  WCA energy for atom 11: -1.468867560891E+00
  WCA energy for atom 12: -1.557005662832E+00
  WCA energy for atom 13: -1.473759654043E+00
  WCA energy for atom 14: -1.502261431335E+00
  WCA energy for atom 15: -1.550940901474E+00
  WCA energy for atom 16: -1.667828659696E+00

Total WCA energy: -48.1507 kJ/mol

Total non-polar energy = 1.439739455792E+01 kJ/mol
----------------------------------------
CALCULATION #2 (solvated-butane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 8.064333822716E-01
  SASA for atom 3: 4.375647796400E+00
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.660345529247E+01
  SASA for atom 8: 1.658782115377E+01
  SASA for atom 9: 1.658260977421E+01
  SASA for atom 10: 1.658260977421E+01
  SASA for atom 11: 2.145003828744E+01
  SASA for atom 12: 1.852124297220E+01
  SASA for atom 13: 1.856293400871E+01

Total solvent accessible surface area: 193.855 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 6.854683749309E-03
  Surface tension*area energy for atom 3: 3.719300626940E-02
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.411293699860E-01
  Surface tension*area energy for atom 8: 1.409964798071E-01
  Surface tension*area energy for atom 9: 1.409521830808E-01
  Surface tension*area energy for atom 10: 1.409521830808E-01
  Surface tension*area energy for atom 11: 1.823253254433E-01
  Surface tension*area energy for atom 12: 1.574305652637E-01
  Surface tension*area energy for atom 13: 1.577849390741E-01

Total surface tension energy: 1.64777 kJ/mol

Total solvent accessible volume: 217.863 A^3

Total pressure*volume energy: 52.1564 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.728858147814E+00
  WCA energy for atom 1: -6.204037472587E+00
  WCA energy for atom 2: -6.202937735018E+00
  WCA energy for atom 3: -6.728762249931E+00
  WCA energy for atom 4: -1.623549989062E+00
  WCA energy for atom 5: -1.709092300778E+00
  WCA energy for atom 6: -1.625196457114E+00
  WCA energy for atom 7: -1.484289341167E+00
  WCA energy for atom 8: -1.485410538626E+00
  WCA energy for atom 9: -1.485593139015E+00
  WCA energy for atom 10: -1.484878734279E+00
  WCA energy for atom 11: -1.708585062695E+00
  WCA energy for atom 12: -1.625094916482E+00
  WCA energy for atom 13: -1.624416805392E+00

Total WCA energy: -41.7207 kJ/mol

Total non-polar energy = 1.208346456826E+01 kJ/mol
----------------------------------------
CALCULATION #3 (solvated-cyclohexane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 7.840324549863E-01
  SASA for atom 1: 8.064333822716E-01
  SASA for atom 2: 8.288343095569E-01
  SASA for atom 3: 7.840324549863E-01
  SASA for atom 4: 7.989664065098E-01
  SASA for atom 5: 8.363012853187E-01
  SASA for atom 6: 2.001169752764E+01
  SASA for atom 7: 1.616048802948E+01
  SASA for atom 8: 2.001169752764E+01
  SASA for atom 9: 1.619175630687E+01
  SASA for atom 10: 1.616048802948E+01
  SASA for atom 11: 1.993352683418E+01
  SASA for atom 12: 2.001169752764E+01
  SASA for atom 13: 1.618133354774E+01
  SASA for atom 14: 1.617091078861E+01
  SASA for atom 15: 2.001690890721E+01
  SASA for atom 16: 1.993873821374E+01
  SASA for atom 17: 1.617091078861E+01

Total solvent accessible surface area: 221.799 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 6.664275867383E-03
  Surface tension*area energy for atom 1: 6.854683749309E-03
  Surface tension*area energy for atom 2: 7.045091631234E-03
  Surface tension*area energy for atom 3: 6.664275867383E-03
  Surface tension*area energy for atom 4: 6.791214455333E-03
  Surface tension*area energy for atom 5: 7.108560925209E-03
  Surface tension*area energy for atom 6: 1.700994289850E-01
  Surface tension*area energy for atom 7: 1.373641482506E-01
  Surface tension*area energy for atom 8: 1.700994289850E-01
  Surface tension*area energy for atom 9: 1.376299286084E-01
  Surface tension*area energy for atom 10: 1.373641482506E-01
  Surface tension*area energy for atom 11: 1.694349780905E-01
  Surface tension*area energy for atom 12: 1.700994289850E-01
  Surface tension*area energy for atom 13: 1.375413351558E-01
  Surface tension*area energy for atom 14: 1.374527417032E-01
  Surface tension*area energy for atom 15: 1.701437257113E-01
  Surface tension*area energy for atom 16: 1.694792748168E-01
  Surface tension*area energy for atom 17: 1.374527417032E-01

Total surface tension energy: 1.88529 kJ/mol

Total solvent accessible volume: 267.435 A^3

Total pressure*volume energy: 64.0239 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -5.793234697241E+00
  WCA energy for atom 1: -5.784370526583E+00
  WCA energy for atom 2: -5.791799130412E+00
  WCA energy for atom 3: -5.788504399087E+00
  WCA energy for atom 4: -5.797319672490E+00
  WCA energy for atom 5: -5.787358035342E+00
  WCA energy for atom 6: -1.523887929614E+00
  WCA energy for atom 7: -1.413678912317E+00
  WCA energy for atom 8: -1.521751604392E+00
  WCA energy for atom 9: -1.414741802525E+00
  WCA energy for atom 10: -1.413367854344E+00
  WCA energy for atom 11: -1.523407238081E+00
  WCA energy for atom 12: -1.523000623583E+00
  WCA energy for atom 13: -1.413922068538E+00
  WCA energy for atom 14: -1.416316744211E+00
  WCA energy for atom 15: -1.524577474659E+00
  WCA energy for atom 16: -1.523300410052E+00
  WCA energy for atom 17: -1.414522566061E+00

Total WCA energy: -52.3691 kJ/mol

Total non-polar energy = 1.354016672221E+01 kJ/mol
----------------------------------------
CALCULATION #4 (solvated-cyclopentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 9.490526193215E+00
  SASA for atom 1: 9.512927120500E+00
  SASA for atom 2: 2.299828534626E+00
  SASA for atom 3: 1.919012770776E+00
  SASA for atom 4: 2.307295510388E+00
  SASA for atom 5: 2.325838699632E+01
  SASA for atom 6: 2.325838699632E+01
  SASA for atom 7: 2.045987617019E+01
  SASA for atom 8: 2.067875411190E+01
  SASA for atom 9: 2.028790064456E+01
  SASA for atom 10: 1.897463299431E+01
  SASA for atom 11: 2.048593306801E+01
  SASA for atom 12: 2.070481100972E+01

Total solvent accessible surface area: 193.638 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 8.066947264233E-02
  Surface tension*area energy for atom 1: 8.085988052425E-02
  Surface tension*area energy for atom 2: 1.954854254432E-02
  Surface tension*area energy for atom 3: 1.631160855160E-02
  Surface tension*area energy for atom 4: 1.961201183830E-02
  Surface tension*area energy for atom 5: 1.976962894687E-01
  Surface tension*area energy for atom 6: 1.976962894687E-01
  Surface tension*area energy for atom 7: 1.739089474466E-01
  Surface tension*area energy for atom 8: 1.757694099511E-01
  Surface tension*area energy for atom 9: 1.724471554788E-01
  Surface tension*area energy for atom 10: 1.612843804516E-01
  Surface tension*area energy for atom 11: 1.741304310781E-01
  Surface tension*area energy for atom 12: 1.759908935826E-01

Total surface tension energy: 1.64593 kJ/mol

Total solvent accessible volume: 217.998 A^3

Total pressure*volume energy: 52.1887 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.343496616804E+00
  WCA energy for atom 1: -6.327869601807E+00
  WCA energy for atom 2: -6.334858040579E+00
  WCA energy for atom 3: -6.296075406417E+00
  WCA energy for atom 4: -6.345600816761E+00
  WCA energy for atom 5: -1.663697465126E+00
  WCA energy for atom 6: -1.662444032853E+00
  WCA energy for atom 7: -1.572325104493E+00
  WCA energy for atom 8: -1.604626551065E+00
  WCA energy for atom 9: -1.586431484963E+00
  WCA energy for atom 10: -1.554291291374E+00
  WCA energy for atom 11: -1.574315220751E+00
  WCA energy for atom 12: -1.604941679892E+00

Total WCA energy: -44.471 kJ/mol

Total non-polar energy = 9.363673200142E+00 kJ/mol
----------------------------------------
CALCULATION #5 (solvated-ethane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 5.995981536705E+00
  SASA for atom 1: 5.966113633657E+00
  SASA for atom 2: 2.121552620704E+01
  SASA for atom 3: 2.124158310486E+01
  SASA for atom 4: 2.125200586399E+01
  SASA for atom 5: 2.123116034573E+01
  SASA for atom 6: 2.125200586399E+01
  SASA for atom 7: 2.127285138225E+01

Total solvent accessible surface area: 139.427 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 5.096584306199E-02
  Surface tension*area energy for atom 1: 5.071196588609E-02
  Surface tension*area energy for atom 2: 1.803319727598E-01
  Surface tension*area energy for atom 3: 1.805534563913E-01
  Surface tension*area energy for atom 4: 1.806420498439E-01
  Surface tension*area energy for atom 5: 1.804648629387E-01
  Surface tension*area energy for atom 6: 1.806420498439E-01
  Surface tension*area energy for atom 7: 1.808192367491E-01

Total surface tension energy: 1.18513 kJ/mol

Total solvent accessible volume: 140.346 A^3

Total pressure*volume energy: 33.5988 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -7.360066353115E+00
  WCA energy for atom 1: -7.355483516201E+00
  WCA energy for atom 2: -1.776106201066E+00
  WCA energy for atom 3: -1.773973940651E+00
  WCA energy for atom 4: -1.775401936843E+00
  WCA energy for atom 5: -1.773464835521E+00
  WCA energy for atom 6: -1.774382856097E+00
  WCA energy for atom 7: -1.772366599434E+00

Total WCA energy: -25.3612 kJ/mol

Total non-polar energy = 9.422717598546E+00 kJ/mol
----------------------------------------
CALCULATION #6 (solvated-hexane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 3.285469335181E-01
  SASA for atom 3: 2.986790304710E-01
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.655655287639E+01
  SASA for atom 8: 1.655134149682E+01
  SASA for atom 9: 1.360170066332E+01
  SASA for atom 10: 1.357043238593E+01
  SASA for atom 11: 1.381536722546E+01
  SASA for atom 12: 1.384142412329E+01
  SASA for atom 13: 7.765654792245E-01
  SASA for atom 14: 1.684839013200E+01
  SASA for atom 15: 1.682233323417E+01
  SASA for atom 16: 4.166572475070E+00
  SASA for atom 17: 2.179398933870E+01
  SASA for atom 18: 1.877660057086E+01
  SASA for atom 19: 1.876096643216E+01

Total solvent accessible surface area: 250.291 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 2.792648934903E-03
  Surface tension*area energy for atom 3: 2.538771759003E-03
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.407306994493E-01
  Surface tension*area energy for atom 8: 1.406864027230E-01
  Surface tension*area energy for atom 9: 1.156144556382E-01
  Surface tension*area energy for atom 10: 1.153486752804E-01
  Surface tension*area energy for atom 11: 1.174306214164E-01
  Surface tension*area energy for atom 12: 1.176521050479E-01
  Surface tension*area energy for atom 13: 6.600806573408E-03
  Surface tension*area energy for atom 14: 1.432113161220E-01
  Surface tension*area energy for atom 15: 1.429898324905E-01
  Surface tension*area energy for atom 16: 3.541586603809E-02
  Surface tension*area energy for atom 17: 1.852489093789E-01
  Surface tension*area energy for atom 18: 1.596011048523E-01
  Surface tension*area energy for atom 19: 1.594682146734E-01

Total surface tension energy: 2.12748 kJ/mol

Total solvent accessible volume: 298.053 A^3

Total pressure*volume energy: 71.3539 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.635406071935E+00
  WCA energy for atom 1: -5.957247427848E+00
  WCA energy for atom 2: -5.524801144538E+00
  WCA energy for atom 3: -5.522294168859E+00
  WCA energy for atom 4: -1.605314409440E+00
  WCA energy for atom 5: -1.701051761776E+00
  WCA energy for atom 6: -1.606669162773E+00
  WCA energy for atom 7: -1.442505934938E+00
  WCA energy for atom 8: -1.443059002759E+00
  WCA energy for atom 9: -1.328947132810E+00
  WCA energy for atom 10: -1.328906972440E+00
  WCA energy for atom 11: -1.331566344214E+00
  WCA energy for atom 12: -1.328041776815E+00
  WCA energy for atom 13: -5.937562025661E+00
  WCA energy for atom 14: -1.442277774427E+00
  WCA energy for atom 15: -1.442777091510E+00
  WCA energy for atom 16: -6.602262542378E+00
  WCA energy for atom 17: -1.698172146664E+00
  WCA energy for atom 18: -1.600970858835E+00
  WCA energy for atom 19: -1.600841970217E+00

Total WCA energy: -57.0807 kJ/mol

Total non-polar energy = 1.640068943201E+01 kJ/mol
----------------------------------------
CALCULATION #7 (solvated-isobutane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.464676753463E+00
  SASA for atom 1: 1.984493338158E+01
  SASA for atom 2: 1.778643845361E+01
  SASA for atom 3: 1.671289426332E+01
  SASA for atom 4: 0.000000000000E+00
  SASA for atom 5: 3.531879535319E+00
  SASA for atom 6: 1.673895116114E+01
  SASA for atom 7: 1.793756846098E+01
  SASA for atom 8: 1.973549441072E+01
  SASA for atom 9: 1.710895911022E+01
  SASA for atom 10: 4.599657069253E+00
  SASA for atom 11: 1.937069784121E+01
  SASA for atom 12: 1.654613011726E+01
  SASA for atom 13: 1.936548646165E+01

Total solvent accessible surface area: 192.744 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.944975240444E-02
  Surface tension*area energy for atom 1: 1.686819337434E-01
  Surface tension*area energy for atom 2: 1.511847268556E-01
  Surface tension*area energy for atom 3: 1.420596012382E-01
  Surface tension*area energy for atom 4: 0.000000000000E+00
  Surface tension*area energy for atom 5: 3.002097605021E-02
  Surface tension*area energy for atom 6: 1.422810848697E-01
  Surface tension*area energy for atom 7: 1.524693319183E-01
  Surface tension*area energy for atom 8: 1.677517024912E-01
  Surface tension*area energy for atom 9: 1.454261524369E-01
  Surface tension*area energy for atom 10: 3.909708508865E-02
  Surface tension*area energy for atom 11: 1.646509316503E-01
  Surface tension*area energy for atom 12: 1.406421059967E-01
  Surface tension*area energy for atom 13: 1.646066349240E-01

Total surface tension energy: 1.63832 kJ/mol

Total solvent accessible volume: 218.943 A^3

Total pressure*volume energy: 52.415 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.381016335247E+00
  WCA energy for atom 1: -1.612317964554E+00
  WCA energy for atom 2: -1.588013719598E+00
  WCA energy for atom 3: -1.532162371190E+00
  WCA energy for atom 4: -5.987950445279E+00
  WCA energy for atom 5: -6.393089030861E+00
  WCA energy for atom 6: -1.533454887042E+00
  WCA energy for atom 7: -1.587650918485E+00
  WCA energy for atom 8: -1.614083521570E+00
  WCA energy for atom 9: -1.442402031577E+00
  WCA energy for atom 10: -6.408813541353E+00
  WCA energy for atom 11: -1.605830214390E+00
  WCA energy for atom 12: -1.529385873788E+00
  WCA energy for atom 13: -1.605662490385E+00

Total WCA energy: -40.8218 kJ/mol

Total non-polar energy = 1.323144287435E+01 kJ/mol
----------------------------------------
CALCULATION #8 (solvated-methane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 1.231304303117E+01
  SASA for atom 1: 2.323233009850E+01
  SASA for atom 2: 2.345641941977E+01
  SASA for atom 3: 2.377431357320E+01
  SASA for atom 4: 2.264344420771E+01

Total solvent accessible surface area: 105.42 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 1.046608657649E-01
  Surface tension*area energy for atom 1: 1.974748058372E-01
  Surface tension*area energy for atom 2: 1.993795650680E-01
  Surface tension*area energy for atom 3: 2.020816653722E-01
  Surface tension*area energy for atom 4: 1.924692757655E-01

Total surface tension energy: 0.896066 kJ/mol

Total solvent accessible volume: 95.985 A^3

Total pressure*volume energy: 22.9788 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -8.133807570805E+00
  WCA energy for atom 1: -1.962181541765E+00
  WCA energy for atom 2: -1.964078319162E+00
  WCA energy for atom 3: -1.963015006647E+00
  WCA energy for atom 4: -1.957425549100E+00

Total WCA energy: -15.9805 kJ/mol

Total non-polar energy = 7.894367190329E+00 kJ/mol
----------------------------------------
CALCULATION #9 (solvated-neopentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 2.441701074100E+00
  SASA for atom 1: 1.663993494942E+01
  SASA for atom 2: 1.715586152630E+01
  SASA for atom 3: 1.645753666466E+01
  SASA for atom 4: 0.000000000000E+00
  SASA for atom 5: 2.389432243768E+00
  SASA for atom 6: 1.638457735076E+01
  SASA for atom 7: 1.667641460637E+01
  SASA for atom 8: 1.721839808108E+01
  SASA for atom 9: 2.419300146815E+00
  SASA for atom 10: 1.640021148945E+01
  SASA for atom 11: 1.666599184724E+01
  SASA for atom 12: 1.719234118325E+01
  SASA for atom 13: 2.449168049862E+00
  SASA for atom 14: 1.723403221977E+01
  SASA for atom 15: 1.639500010989E+01
  SASA for atom 16: 1.663472356985E+01

Total solvent accessible surface area: 210.755 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.075445912985E-02
  Surface tension*area energy for atom 1: 1.414394470700E-01
  Surface tension*area energy for atom 2: 1.458248229736E-01
  Surface tension*area energy for atom 3: 1.398890616496E-01
  Surface tension*area energy for atom 4: 0.000000000000E+00
  Surface tension*area energy for atom 5: 2.031017407203E-02
  Surface tension*area energy for atom 6: 1.392689074814E-01
  Surface tension*area energy for atom 7: 1.417495241541E-01
  Surface tension*area energy for atom 8: 1.463563836891E-01
  Surface tension*area energy for atom 9: 2.056405124793E-02
  Surface tension*area energy for atom 10: 1.394017976603E-01
  Surface tension*area energy for atom 11: 1.416609307015E-01
  Surface tension*area energy for atom 12: 1.461349000577E-01
  Surface tension*area energy for atom 13: 2.081792842383E-02
  Surface tension*area energy for atom 14: 1.464892738680E-01
  Surface tension*area energy for atom 15: 1.393575009340E-01
  Surface tension*area energy for atom 16: 1.413951503437E-01

Total surface tension energy: 1.79141 kJ/mol

Total solvent accessible volume: 251.127 A^3

Total pressure*volume energy: 60.1198 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.011082520236E+00
  WCA energy for atom 1: -1.497367782613E+00
  WCA energy for atom 2: -1.498546483218E+00
  WCA energy for atom 3: -1.492562171495E+00
  WCA energy for atom 4: -5.447325863939E+00
  WCA energy for atom 5: -6.004516149175E+00
  WCA energy for atom 6: -1.492776531092E+00
  WCA energy for atom 7: -1.496078170066E+00
  WCA energy for atom 8: -1.501529655270E+00
  WCA energy for atom 9: -5.996267554365E+00
  WCA energy for atom 10: -1.492194267752E+00
  WCA energy for atom 11: -1.496027211216E+00
  WCA energy for atom 12: -1.500561393960E+00
  WCA energy for atom 13: -6.000218612907E+00
  WCA energy for atom 14: -1.500859921426E+00
  WCA energy for atom 15: -1.492908499790E+00
  WCA energy for atom 16: -1.494057174414E+00

Total WCA energy: -47.4149 kJ/mol

Total non-polar energy = 1.449633815052E+01 kJ/mol
----------------------------------------
CALCULATION #10 (solvated-pentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 3.285469335181E-01
  SASA for atom 3: 7.466975761774E-01
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.655655287639E+01
  SASA for atom 8: 1.655134149682E+01
  SASA for atom 9: 1.360170066332E+01
  SASA for atom 10: 1.357043238593E+01
  SASA for atom 11: 1.685881289113E+01
  SASA for atom 12: 1.687444702982E+01
  SASA for atom 13: 4.196440378117E+00
  SASA for atom 14: 1.881308022781E+01
  SASA for atom 15: 1.882350298694E+01
  SASA for atom 16: 2.182004623652E+01

Total solvent accessible surface area: 222.524 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 2.792648934903E-03
  Surface tension*area energy for atom 3: 6.346929397508E-03
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.407306994493E-01
  Surface tension*area energy for atom 8: 1.406864027230E-01
  Surface tension*area energy for atom 9: 1.156144556382E-01
  Surface tension*area energy for atom 10: 1.153486752804E-01
  Surface tension*area energy for atom 11: 1.432999095746E-01
  Surface tension*area energy for atom 12: 1.434327997535E-01
  Surface tension*area energy for atom 13: 3.566974321399E-02
  Surface tension*area energy for atom 14: 1.599111819364E-01
  Surface tension*area energy for atom 15: 1.599997753890E-01
  Surface tension*area energy for atom 16: 1.854703930104E-01

Total surface tension energy: 1.89145 kJ/mol

Total solvent accessible volume: 258.93 A^3

Total pressure*volume energy: 61.9878 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.655804319869E+00
  WCA energy for atom 1: -6.027315962813E+00
  WCA energy for atom 2: -5.696430965386E+00
  WCA energy for atom 3: -6.016749084714E+00
  WCA energy for atom 4: -1.608595384643E+00
  WCA energy for atom 5: -1.703300955380E+00
  WCA energy for atom 6: -1.609931495887E+00
  WCA energy for atom 7: -1.457107525189E+00
  WCA energy for atom 8: -1.457741620594E+00
  WCA energy for atom 9: -1.354235498709E+00
  WCA energy for atom 10: -1.354106470090E+00
  WCA energy for atom 11: -1.456736412636E+00
  WCA energy for atom 12: -1.455995435596E+00
  WCA energy for atom 13: -6.633650611186E+00
  WCA energy for atom 14: -1.605996088477E+00
  WCA energy for atom 15: -1.606549890103E+00
  WCA energy for atom 16: -1.700042300035E+00

Total WCA energy: -49.4003 kJ/mol

Total non-polar energy = 1.447900211546E+01 kJ/mol
----------------------------------------
CALCULATION #11 (solvated-propane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.173464698754E+00
  SASA for atom 1: 1.931858404557E+01
  SASA for atom 2: 2.014198201675E+01
  SASA for atom 3: 2.149694070352E+01
  SASA for atom 4: 1.904078819252E+00
  SASA for atom 5: 2.067354273233E+01
  SASA for atom 6: 1.937590922077E+01
  SASA for atom 7: 3.098794941136E+00
  SASA for atom 8: 1.942802301642E+01
  SASA for atom 9: 1.973028303116E+01
  SASA for atom 10: 2.204934693736E+01

Total solvent accessible surface area: 170.391 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.697444993941E-02
  Surface tension*area energy for atom 1: 1.642079643873E-01
  Surface tension*area energy for atom 2: 1.712068471424E-01
  Surface tension*area energy for atom 3: 1.827239959799E-01
  Surface tension*area energy for atom 4: 1.618466996365E-02
  Surface tension*area energy for atom 5: 1.757251132248E-01
  Surface tension*area energy for atom 6: 1.646952283766E-01
  Surface tension*area energy for atom 7: 2.633975699966E-02
  Surface tension*area energy for atom 8: 1.651381956396E-01
  Surface tension*area energy for atom 9: 1.677074057649E-01
  Surface tension*area energy for atom 10: 1.874194489675E-01

Total surface tension energy: 1.44832 kJ/mol

Total solvent accessible volume: 183.573 A^3

Total pressure*volume energy: 43.9474 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.818670105515E+00
  WCA energy for atom 1: -1.641297645338E+00
  WCA energy for atom 2: -1.649584120441E+00
  WCA energy for atom 3: -1.711408141255E+00
  WCA energy for atom 4: -6.624720142882E+00
  WCA energy for atom 5: -1.610117050515E+00
  WCA energy for atom 6: -1.596858009746E+00
  WCA energy for atom 7: -6.816460624835E+00
  WCA energy for atom 8: -1.642782751806E+00
  WCA energy for atom 9: -1.645779566650E+00
  WCA energy for atom 10: -1.714436154542E+00

Total WCA energy: -33.4721 kJ/mol

Total non-polar energy = 1.192358496286E+01 kJ/mol
----------------------------------------
PRINT STATEMENTS

print APOL energy 1 (solvated-2-methylbutane) end
  Global net APOL energy = 1.439739455792E+01 kJ/mol

print APOL energy 2 (solvated-butane) end
  Global net APOL energy = 1.208346456826E+01 kJ/mol

print APOL energy 3 (solvated-cyclohexane) end
  Global net APOL energy = 1.354016672221E+01 kJ/mol

print APOL energy 4 (solvated-cyclopentane) end
  Global net APOL energy = 9.363673200142E+00 kJ/mol

print APOL energy 5 (solvated-ethane) end
  Global net APOL energy = 9.422717598546E+00 kJ/mol

print APOL energy 6 (solvated-hexane) end
  Global net APOL energy = 1.640068943201E+01 kJ/mol

print APOL energy 7 (solvated-isobutane) end
  Global net APOL energy = 1.323144287435E+01 kJ/mol

print APOL energy 8 (solvated-methane) end
  Global net APOL energy = 7.894367190329E+00 kJ/mol

print APOL energy 9 (solvated-neopentane) end
  Global net APOL energy = 1.449633815052E+01 kJ/mol

print APOL energy 10 (solvated-pentane) end
  Global net APOL energy = 1.447900211546E+01 kJ/mol

print APOL energy 11 (solvated-propane) end
  Global net APOL energy = 1.192358496286E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 11 molecules
Final memory usage:  0.001 MB total, 2.267 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.439739455792e+01, 1.439739455792e+01)
*** PASSED ***
Testing computed result against expected result (1.208346456826e+01, 1.208346456826e+01)
*** PASSED ***
Testing computed result against expected result (1.354016672221e+01, 1.354016672221e+01)
*** PASSED ***
Testing computed result against expected result (9.363673200142e+00, 9.363673200142e+00)
*** PASSED ***
Testing computed result against expected result (9.422717598546e+00, 9.422717598546e+00)
*** PASSED ***
Testing computed result against expected result (1.640068943201e+01, 1.640068943201e+01)
*** PASSED ***
Testing computed result against expected result (1.323144287435e+01, 1.323144287435e+01)
*** PASSED ***
Testing computed result against expected result (7.894367190329e+00, 7.894367190329e+00)
*** PASSED ***
Testing computed result against expected result (1.449633815052e+01, 1.449633815052e+01)
*** PASSED ***
Testing computed result against expected result (1.447900211546e+01, 1.447900211546e+01)
*** PASSED ***
Testing computed result against expected result (1.192358496286e+01, 1.192358496286e+01)
*** PASSED ***
Elapsed time: 32.357516 seconds
--------------------------------------------------------------------------------
Total elapsed time: 32.357516 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7h-dmso-mol.in

Checking for intermediate energies in input file alkanes.out
EXPECTED COMPUTED: 11
EXPECTED EXPECTED: 11
COMPUTED: [14.39739455792, 12.08346456826, 13.54016672221, 9.363673200142, 9.422717598546, 16.40068943201, 13.23144287435, 7.894367190329, 14.49633815052, 14.47900211546, 11.92358496286]
EXPECTED: ['1.439739455792E+01', '1.208346456826E+01', '1.354016672221E+01', '9.363673200142E+00', '9.422717598546E+00', '1.640068943201E+01', '1.323144287435E+01', '7.894367190329E+00', '1.449633815052E+01', '1.447900211546E+01', '1.192358496286E+01']
COMPUTED RESULT 14.39739455792
COMPUTED RESULT 12.08346456826
COMPUTED RESULT 13.54016672221
COMPUTED RESULT 9.363673200142
COMPUTED RESULT 9.422717598546
COMPUTED RESULT 16.40068943201
COMPUTED RESULT 13.23144287435
COMPUTED RESULT 7.894367190329
COMPUTED RESULT 14.49633815052
COMPUTED RESULT 14.47900211546
COMPUTED RESULT 11.92358496286
Running tests for FKBP section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   1d7h-dmso-mol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', '1d7h-dmso-mol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file 1d7h-dmso-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7h-dmso-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1673 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dmso-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  10 atoms
  Centered at (1.775e+01, 1.777e+01, 2.049e+01)
  Net charge 2.78e-17 e
Reading PQR-format atom data from 1d7h-min.pqr.
  1663 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 122.059 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.060899690259E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.276523673491E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.399234956777E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.610066575192E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dmso-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.961107503213E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dmso-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.121048606059E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dmso-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.751571424823E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dmso-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.339101343121E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7h-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.058410584089E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7h-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.205385249581E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7h-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.395961902233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7h-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.538248433997E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.335429017008E+03 kJ/mol
  Global net ELEC energy = -3.335429017008E+03 kJ/mol

print energy 6 (dmso-solv-fine) - 8 (dmso-ref-fine) end
  Local net energy (PE 0) = -2.180527370616E+01 kJ/mol
  Global net ELEC energy = -2.180527370616E+01 kJ/mol

print energy 10 (1d7h-solv-fine) - 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = -3.328631844166E+03 kJ/mol
  Global net ELEC energy = -3.328631844166E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dmso-solv-fine) + 8 (dmso-ref-fine) - 10 (1d7h-solv-fine) + 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = 1.500810086373E+01 kJ/mol
  Global net ELEC energy = 1.500810086373E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 221.696 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.060899690259e+04, 1.060899690259e+04)
*** PASSED ***
Testing computed result against expected result (4.276523673491e+04, 4.276523673491e+04)
*** PASSED ***
Testing computed result against expected result (1.399234956777e+04, 1.399234956777e+04)
*** PASSED ***
Testing computed result against expected result (4.610066575192e+04, 4.610066575192e+04)
*** PASSED ***
Testing computed result against expected result (3.961107503213e+01, 3.961107503213e+01)
*** PASSED ***
Testing computed result against expected result (7.121048606059e+02, 7.121048606059e+02)
*** PASSED ***
Testing computed result against expected result (6.751571424823e+01, 6.751571424823e+01)
*** PASSED ***
Testing computed result against expected result (7.339101343121e+02, 7.339101343121e+02)
*** PASSED ***
Testing computed result against expected result (1.058410584089e+04, 1.058410584089e+04)
*** PASSED ***
Testing computed result against expected result (4.205385249581e+04, 4.205385249581e+04)
*** PASSED ***
Testing computed result against expected result (1.395961902233e+04, 1.395961902233e+04)
*** PASSED ***
Testing computed result against expected result (4.538248433997e+04, 4.538248433997e+04)
*** PASSED ***
Testing computed result against expected result (1.500810086373e+01, 1.500810086371e+01)
*** PASSED ***
Elapsed time: 26.266121 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7h-dmso-smol.in

Checking for intermediate energies in input file 1d7h-dmso-mol.out
EXPECTED COMPUTED: 16
EXPECTED EXPECTED: 16
COMPUTED: [10608.99690259, 42765.23673491, 13992.34956777, 46100.66575192, 39.61107503213, 712.1048606059, 67.51571424823, 733.9101343121, 10584.10584089, 42053.85249581, 13959.61902233, 45382.48433997, -3335.429017008, -21.80527370616, -3328.631844166, 15.00810086373]
EXPECTED: ['1.060899690259E+04', '4.276523673491E+04', '1.399234956777E+04', '4.610066575192E+04', '3.961107503213E+01', '7.121048606059E+02', '6.751571424823E+01', '7.339101343121E+02', '1.058410584089E+04', '4.205385249581E+04', '1.395961902233E+04', '4.538248433997E+04', '*', '*', '*', '1.500810086371E+01']
COMPUTED RESULT 10608.99690259
COMPUTED RESULT 42765.23673491
COMPUTED RESULT 13992.34956777
COMPUTED RESULT 46100.66575192
COMPUTED RESULT 39.61107503213
COMPUTED RESULT 712.1048606059
COMPUTED RESULT 67.51571424823
COMPUTED RESULT 733.9101343121
COMPUTED RESULT 10584.10584089
COMPUTED RESULT 42053.85249581
COMPUTED RESULT 13959.61902233
COMPUTED RESULT 45382.48433997
COMPUTED RESULT -3335.429017008
COMPUTED RESULT -21.80527370616
COMPUTED RESULT -3328.631844166
COMPUTED RESULT 15.00810086373
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   1d7h-dmso-smol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', '1d7h-dmso-smol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file 1d7h-dmso-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7h-dmso-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1673 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dmso-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  10 atoms
  Centered at (1.775e+01, 1.777e+01, 2.049e+01)
  Net charge 2.78e-17 e
Reading PQR-format atom data from 1d7h-min.pqr.
  1663 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 122.059 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.074948704824E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.289487256481E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.399234956777E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.610066575192E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dmso-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.719709905887E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dmso-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.125747080979E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dmso-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.751571424823E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dmso-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.339101343121E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7h-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.071654753674E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7h-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.218178203716E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7h-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.395961902233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7h-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.538248433997E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.205793187109E+03 kJ/mol
  Global net ELEC energy = -3.205793187109E+03 kJ/mol

print energy 6 (dmso-solv-fine) - 8 (dmso-ref-fine) end
  Local net energy (PE 0) = -2.133542621421E+01 kJ/mol
  Global net ELEC energy = -2.133542621421E+01 kJ/mol

print energy 10 (1d7h-solv-fine) - 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = -3.200702302816E+03 kJ/mol
  Global net ELEC energy = -3.200702302816E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dmso-solv-fine) + 8 (dmso-ref-fine) - 10 (1d7h-solv-fine) + 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = 1.624454192074E+01 kJ/mol
  Global net ELEC energy = 1.624454192074E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 221.696 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.074948704824e+04, 1.074948704824e+04)
*** PASSED ***
Testing computed result against expected result (4.289487256481e+04, 4.289487256481e+04)
*** PASSED ***
Testing computed result against expected result (1.399234956777e+04, 1.399234956777e+04)
*** PASSED ***
Testing computed result against expected result (4.610066575192e+04, 4.610066575192e+04)
*** PASSED ***
Testing computed result against expected result (3.719709905887e+01, 3.719709905887e+01)
*** PASSED ***
Testing computed result against expected result (7.125747080979e+02, 7.125747080979e+02)
*** PASSED ***
Testing computed result against expected result (6.751571424823e+01, 6.751571424823e+01)
*** PASSED ***
Testing computed result against expected result (7.339101343121e+02, 7.339101343121e+02)
*** PASSED ***
Testing computed result against expected result (1.071654753674e+04, 1.071654753674e+04)
*** PASSED ***
Testing computed result against expected result (4.218178203716e+04, 4.218178203716e+04)
*** PASSED ***
Testing computed result against expected result (1.395961902233e+04, 1.395961902233e+04)
*** PASSED ***
Testing computed result against expected result (4.538248433997e+04, 4.538248433997e+04)
*** PASSED ***
Testing computed result against expected result (1.624454192074e+01, 1.624454192072e+01)
*** PASSED ***
Elapsed time: 23.47848 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7i-dss-mol.in

Checking for intermediate energies in input file 1d7h-dmso-smol.out
EXPECTED COMPUTED: 16
EXPECTED EXPECTED: 16
COMPUTED: [10749.48704824, 42894.87256481, 13992.34956777, 46100.66575192, 37.19709905887, 712.5747080979, 67.51571424823, 733.9101343121, 10716.54753674, 42181.78203716, 13959.61902233, 45382.48433997, -3205.793187109, -21.33542621421, -3200.702302816, 16.24454192074]
EXPECTED: ['1.074948704824E+04', '4.289487256481E+04', '1.399234956777E+04', '4.610066575192E+04', '3.719709905887E+01', '7.125747080979E+02', '6.751571424823E+01', '7.339101343121E+02', '1.071654753674E+04', '4.218178203716E+04', '1.395961902233E+04', '4.538248433997E+04', '*', '*', '*', '1.624454192072E+01']
COMPUTED RESULT 10749.48704824
COMPUTED RESULT 42894.87256481
COMPUTED RESULT 13992.34956777
COMPUTED RESULT 46100.66575192
COMPUTED RESULT 37.19709905887
COMPUTED RESULT 712.5747080979
COMPUTED RESULT 67.51571424823
COMPUTED RESULT 733.9101343121
COMPUTED RESULT 10716.54753674
COMPUTED RESULT 42181.78203716
COMPUTED RESULT 13959.61902233
COMPUTED RESULT 45382.48433997
COMPUTED RESULT -3205.793187109
COMPUTED RESULT -21.33542621421
COMPUTED RESULT -3200.702302816
COMPUTED RESULT 16.24454192074
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   1d7i-dss-mol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', '1d7i-dss-mol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file 1d7i-dss-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7i-dss-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1677 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dss-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.734e+01, 1.921e+01, 2.050e+01)
  Net charge -8.33e-17 e
Reading PQR-format atom data from 1d7i-min.pqr.
  1663 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 122.425 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.160578033846E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.955701871716E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.264965939588E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.301801664829E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dss-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.431133325426E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dss-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.677348113184E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dss-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.171079106781E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dss-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.697869784185E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7i-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.040108332204E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7i-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.787747796627E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7i-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.252495566243E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7i-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.133237922574E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.460997931137E+03 kJ/mol
  Global net ELEC energy = -3.460997931137E+03 kJ/mol

print energy 6 (dss-solv-fine) - 8 (dss-ref-fine) end
  Local net energy (PE 0) = -2.052167100108E+01 kJ/mol
  Global net ELEC energy = -2.052167100108E+01 kJ/mol

print energy 10 (1d7i-solv-fine) - 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = -3.454901259473E+03 kJ/mol
  Global net ELEC energy = -3.454901259473E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dss-solv-fine) + 8 (dss-ref-fine) - 10 (1d7i-solv-fine) + 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = 1.442499933664E+01 kJ/mol
  Global net ELEC energy = 1.442499933664E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 222.305 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.160578033846e+03, 9.160578033846e+03)
*** PASSED ***
Testing computed result against expected result (3.955701871716e+04, 3.955701871716e+04)
*** PASSED ***
Testing computed result against expected result (1.264965939588e+04, 1.264965939588e+04)
*** PASSED ***
Testing computed result against expected result (4.301801664829e+04, 4.301801664829e+04)
*** PASSED ***
Testing computed result against expected result (9.431133325426e+01, 9.431133325426e+01)
*** PASSED ***
Testing computed result against expected result (1.677348113184e+03, 1.677348113184e+03)
*** PASSED ***
Testing computed result against expected result (1.171079106781e+02, 1.171079106781e+02)
*** PASSED ***
Testing computed result against expected result (1.697869784185e+03, 1.697869784185e+03)
*** PASSED ***
Testing computed result against expected result (9.040108332204e+03, 9.040108332204e+03)
*** PASSED ***
Testing computed result against expected result (3.787747796627e+04, 3.787747796627e+04)
*** PASSED ***
Testing computed result against expected result (1.252495566243e+04, 1.252495566243e+04)
*** PASSED ***
Testing computed result against expected result (4.133237922574e+04, 4.133237922574e+04)
*** PASSED ***
Testing computed result against expected result (1.442499933664e+01, 1.442500529301e+01)
*** PASSED ***
Elapsed time: 24.469294 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7i-dss-smol.in

Checking for intermediate energies in input file 1d7i-dss-mol.out
EXPECTED COMPUTED: 16
EXPECTED EXPECTED: 16
COMPUTED: [9160.578033846, 39557.01871716, 12649.65939588, 43018.01664829, 94.31133325426, 1677.348113184, 117.1079106781, 1697.869784185, 9040.108332204, 37877.47796627, 12524.95566243, 41332.37922574, -3460.997931137, -20.52167100108, -3454.901259473, 14.42499933664]
EXPECTED: ['9.160578033846E+03', '3.955701871716E+04', '1.264965939588E+04', '4.301801664829E+04', '9.431133325426E+01', '1.677348113184E+03', '1.171079106781E+02', '1.697869784185E+03', '9.040108332204E+03', '3.787747796627E+04', '1.252495566243E+04', '4.133237922574E+04', '*', '*', '*', '1.442500529301E+01']
COMPUTED RESULT 9160.578033846
COMPUTED RESULT 39557.01871716
COMPUTED RESULT 12649.65939588
COMPUTED RESULT 43018.01664829
COMPUTED RESULT 94.31133325426
COMPUTED RESULT 1677.348113184
COMPUTED RESULT 117.1079106781
COMPUTED RESULT 1697.869784185
COMPUTED RESULT 9040.108332204
COMPUTED RESULT 37877.47796627
COMPUTED RESULT 12524.95566243
COMPUTED RESULT 41332.37922574
COMPUTED RESULT -3460.997931137
COMPUTED RESULT -20.52167100108
COMPUTED RESULT -3454.901259473
COMPUTED RESULT 14.42499933664
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   1d7i-dss-smol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', '1d7i-dss-smol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file 1d7i-dss-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7i-dss-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1677 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dss-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.734e+01, 1.921e+01, 2.050e+01)
  Net charge -8.33e-17 e
Reading PQR-format atom data from 1d7i-min.pqr.
  1663 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 122.425 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.634884642408E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.003177540425E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.264965939588E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.301801664829E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dss-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.942232645345E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dss-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.677798535473E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dss-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.171079106781E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dss-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.697869784185E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7i-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.507068451372E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7i-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.835075772299E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7i-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.252495566243E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7i-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.133237922574E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -2.986241244040E+03 kJ/mol
  Global net ELEC energy = -2.986241244040E+03 kJ/mol

print energy 6 (dss-solv-fine) - 8 (dss-ref-fine) end
  Local net energy (PE 0) = -2.007124871262E+01 kJ/mol
  Global net ELEC energy = -2.007124871262E+01 kJ/mol

print energy 10 (1d7i-solv-fine) - 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = -2.981621502756E+03 kJ/mol
  Global net ELEC energy = -2.981621502756E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dss-solv-fine) + 8 (dss-ref-fine) - 10 (1d7i-solv-fine) + 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = 1.545150742843E+01 kJ/mol
  Global net ELEC energy = 1.545150742843E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 222.305 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.634884642408e+03, 9.634884642408e+03)
*** PASSED ***
Testing computed result against expected result (4.003177540425e+04, 4.003177540425e+04)
*** PASSED ***
Testing computed result against expected result (1.264965939588e+04, 1.264965939588e+04)
*** PASSED ***
Testing computed result against expected result (4.301801664829e+04, 4.301801664829e+04)
*** PASSED ***
Testing computed result against expected result (7.942232645345e+01, 7.942232645345e+01)
*** PASSED ***
Testing computed result against expected result (1.677798535473e+03, 1.677798535473e+03)
*** PASSED ***
Testing computed result against expected result (1.171079106781e+02, 1.171079106781e+02)
*** PASSED ***
Testing computed result against expected result (1.697869784185e+03, 1.697869784185e+03)
*** PASSED ***
Testing computed result against expected result (9.507068451372e+03, 9.507068451372e+03)
*** PASSED ***
Testing computed result against expected result (3.835075772299e+04, 3.835075772299e+04)
*** PASSED ***
Testing computed result against expected result (1.252495566243e+04, 1.252495566243e+04)
*** PASSED ***
Testing computed result against expected result (4.133237922574e+04, 4.133237922574e+04)
*** PASSED ***
Testing computed result against expected result (1.545150742843e+01, 1.545150009785e+01)
*** PASSED ***
Elapsed time: 23.366583 seconds
--------------------------------------------------------------------------------
Total elapsed time: 97.580478 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

Checking for intermediate energies in input file 1d7i-dss-smol.out
EXPECTED COMPUTED: 16
EXPECTED EXPECTED: 16
COMPUTED: [9634.884642408, 40031.77540425, 12649.65939588, 43018.01664829, 79.42232645345, 1677.798535473, 117.1079106781, 1697.869784185, 9507.068451372, 38350.75772299, 12524.95566243, 41332.37922574, -2986.24124404, -20.07124871262, -2981.621502756, 15.45150742843]
EXPECTED: ['9.634884642408E+03', '4.003177540425E+04', '1.264965939588E+04', '4.301801664829E+04', '7.942232645345E+01', '1.677798535473E+03', '1.171079106781E+02', '1.697869784185E+03', '9.507068451372E+03', '3.835075772299E+04', '1.252495566243E+04', '4.133237922574E+04', '*', '*', '*', '1.545150009785E+01']
COMPUTED RESULT 9634.884642408
COMPUTED RESULT 40031.77540425
COMPUTED RESULT 12649.65939588
COMPUTED RESULT 43018.01664829
COMPUTED RESULT 79.42232645345
COMPUTED RESULT 1677.798535473
COMPUTED RESULT 117.1079106781
COMPUTED RESULT 1697.869784185
COMPUTED RESULT 9507.068451372
COMPUTED RESULT 38350.75772299
COMPUTED RESULT 12524.95566243
COMPUTED RESULT 41332.37922574
COMPUTED RESULT -2986.24124404
COMPUTED RESULT -20.07124871262
COMPUTED RESULT -2981.621502756
COMPUTED RESULT 15.45150742843
Running tests for hca-bind section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acet.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (-6.028e+00, 3.898e+00, 1.518e+01)
  Net charge -1.00e+00 e
Reading PQR-format atom data from hca.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  2482 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex.pqr.
  2500 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge -1.02e-14 e
Preparing to run 9 PBE calculations.
----------------------------------------
CALCULATION #1 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 62.727 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.213600726771E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.825764811255E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.458471211905E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 146.516 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.093606095527E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #5 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.515433544464E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.786369323561E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.105322784838E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.533304996252E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #9 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.850429388099E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (acet) - 2 (hca) end
  Local net energy (PE 0) = -5.246475812684E+01 kJ/mol
  Global net ELEC energy = -5.246475812684E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 245.725 MB high water


Thanks for using APBS!

Testing computed result against expected result (2.213600726771e+02, 2.213600726771e+02)
*** PASSED ***
Testing computed result against expected result (1.825764811255e+03, 1.825764811255e+03)
*** PASSED ***
Testing computed result against expected result (6.458471211905e+03, 6.458471211905e+03)
*** PASSED ***
Testing computed result against expected result (2.093606095527e+04, 2.093606095527e+04)
*** PASSED ***
Testing computed result against expected result (1.515433544464e+05, 1.515433544464e+05)
*** PASSED ***
Testing computed result against expected result (1.786369323561e+05, 1.786369323561e+05)
*** PASSED ***
Testing computed result against expected result (2.105322784838e+04, 2.105322784838e+04)
*** PASSED ***
Testing computed result against expected result (1.533304996252e+05, 1.533304996252e+05)
*** PASSED ***
Testing computed result against expected result (1.850429388099e+05, 1.850429388099e+05)
*** PASSED ***
Testing computed result against expected result (-5.246475812684e+01, -5.246475812665e+01)
*** PASSED ***
Elapsed time: 24.019398 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

Checking for intermediate energies in input file apbs-mol.out
EXPECTED COMPUTED: 10
EXPECTED EXPECTED: 10
COMPUTED: [221.3600726771, 1825.764811255, 6458.471211905, 20936.06095527, 151543.3544464, 178636.9323561, 21053.22784838, 153330.4996252, 185042.9388099, -52.46475812684]
EXPECTED: ['2.213600726771E+02', '1.825764811255E+03', '6.458471211905E+03', '2.093606095527E+04', '1.515433544464E+05', '1.786369323561E+05', '2.105322784838E+04', '1.533304996252E+05', '1.850429388099E+05', '-5.246475812665E+01']
COMPUTED RESULT 221.3600726771
COMPUTED RESULT 1825.764811255
COMPUTED RESULT 6458.471211905
COMPUTED RESULT 20936.06095527
COMPUTED RESULT 151543.3544464
COMPUTED RESULT 178636.9323561
COMPUTED RESULT 21053.22784838
COMPUTED RESULT 153330.4996252
COMPUTED RESULT 185042.9388099
COMPUTED RESULT -52.46475812684
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acet.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (-6.028e+00, 3.898e+00, 1.518e+01)
  Net charge -1.00e+00 e
Reading PQR-format atom data from hca.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  2482 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex.pqr.
  2500 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge -1.02e-14 e
Preparing to run 9 PBE calculations.
----------------------------------------
CALCULATION #1 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 62.727 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.884888131017E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.820045922544E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.460002606908E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 146.516 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.189161497021E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #5 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.520000494925E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.790436191580E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.195842512312E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.537771604355E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #9 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.854495619747E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (acet) - 2 (hca) end
  Local net energy (PE 0) = -5.405979017059E+01 kJ/mol
  Global net ELEC energy = -5.405979017059E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 245.725 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.884888131017e+02, 1.884888131017e+02)
*** PASSED ***
Testing computed result against expected result (1.820045922544e+03, 1.820045922544e+03)
*** PASSED ***
Testing computed result against expected result (6.460002606908e+03, 6.460002606908e+03)
*** PASSED ***
Testing computed result against expected result (2.189161497021e+04, 2.189161497021e+04)
*** PASSED ***
Testing computed result against expected result (1.520000494925e+05, 1.520000494925e+05)
*** PASSED ***
Testing computed result against expected result (1.790436191580e+05, 1.790436191580e+05)
*** PASSED ***
Testing computed result against expected result (2.195842512312e+04, 2.195842512312e+04)
*** PASSED ***
Testing computed result against expected result (1.537771604355e+05, 1.537771604355e+05)
*** PASSED ***
Testing computed result against expected result (1.854495619747e+05, 1.854495619747e+05)
*** PASSED ***
Testing computed result against expected result (-5.405979017059e+01, -5.405977880082e+01)
*** PASSED ***
Elapsed time: 21.189529 seconds
--------------------------------------------------------------------------------
Total elapsed time: 45.208927 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

Checking for intermediate energies in input file apbs-smol.out
EXPECTED COMPUTED: 10
EXPECTED EXPECTED: 10
COMPUTED: [188.4888131017, 1820.045922544, 6460.002606908, 21891.61497021, 152000.0494925, 179043.619158, 21958.42512312, 153777.1604355, 185449.5619747, -54.05979017059]
EXPECTED: ['1.884888131017E+02', '1.820045922544E+03', '6.460002606908E+03', '2.189161497021E+04', '1.520000494925E+05', '1.790436191580E+05', '2.195842512312E+04', '1.537771604355E+05', '1.854495619747E+05', '-5.405977880082E+01']
COMPUTED RESULT 188.4888131017
COMPUTED RESULT 1820.045922544
COMPUTED RESULT 6460.002606908
COMPUTED RESULT 21891.61497021
COMPUTED RESULT 152000.0494925
COMPUTED RESULT 179043.619158
COMPUTED RESULT 21958.42512312
COMPUTED RESULT 153777.1604355
COMPUTED RESULT 185449.5619747
COMPUTED RESULT -54.05979017059
Running tests for ionize section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acetic-acid.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.67e-16 e
Reading PQR-format atom data from acetate.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.00e+00 e
Reading PQR-format atom data from proton.pqr.
  1 atoms
  Centered at (1.780e-01, -1.286e+00, 2.937e+00)
  Net charge 1.00e+00 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 61.598 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.823898055191E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.793274462353E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.846917564309E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.815953282539E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.219846763777E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.392741988698E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.420373979905E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.412716615065E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.862359524598E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #10 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.288156251610E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.162533113906E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.585616091973E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (acetic-solv) - 2 (acetic-ref) end
  Local net energy (PE 0) = -2.267882018629E+01 kJ/mol
  Global net ELEC energy = -2.267882018629E+01 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) end
  Local net energy (PE 0) = -1.997462636633E+02 kJ/mol
  Global net ELEC energy = -1.997462636633E+02 kJ/mol

print energy 5 (proton-solv) - 6 (proton-ref) end
  Local net energy (PE 0) = -2.974598403628E+02 kJ/mol
  Global net ELEC energy = -2.974598403628E+02 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) + 5 (proton-solv) - 6 (proton-ref) - 1 (acetic-solv) + 2 (acetic-ref) end
  Local net energy (PE 0) = -4.745272838398E+02 kJ/mol
  Global net ELEC energy = -4.745272838398E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 122.404 MB high water


Thanks for using APBS!

Testing computed result against expected result (5.823898055191e+03, 5.823898055191e+03)
*** PASSED ***
Testing computed result against expected result (9.793274462353e+03, 9.793274462353e+03)
*** PASSED ***
Testing computed result against expected result (5.846917564309e+03, 5.846917564309e+03)
*** PASSED ***
Testing computed result against expected result (9.815953282539e+03, 9.815953282539e+03)
*** PASSED ***
Testing computed result against expected result (8.219846763777e+03, 8.219846763777e+03)
*** PASSED ***
Testing computed result against expected result (1.392741988698e+04, 1.392741988698e+04)
*** PASSED ***
Testing computed result against expected result (8.420373979905e+03, 8.420373979905e+03)
*** PASSED ***
Testing computed result against expected result (1.412716615065e+04, 1.412716615065e+04)
*** PASSED ***
Testing computed result against expected result (3.862359524598e+03, 3.862359524598e+03)
*** PASSED ***
Testing computed result against expected result (6.288156251610e+03, 6.288156251610e+03)
*** PASSED ***
Testing computed result against expected result (4.162533113906e+03, 4.162533113906e+03)
*** PASSED ***
Testing computed result against expected result (6.585616091973e+03, 6.585616091973e+03)
*** PASSED ***
Testing computed result against expected result (-2.267882018629e+01, -2.267881997628e+01)
*** PASSED ***
Testing computed result against expected result (-1.997462636633e+02, -1.997462580204e+02)
*** PASSED ***
Testing computed result against expected result (-2.974598403628e+02, -2.974598331751e+02)
*** PASSED ***
Testing computed result against expected result (-4.745272838398e+02, -4.745272868358e+02)
*** PASSED ***
Elapsed time: 8.992067 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

Checking for intermediate energies in input file apbs-mol.out
EXPECTED COMPUTED: 16
EXPECTED EXPECTED: 16
COMPUTED: [5823.898055191, 9793.274462353, 5846.917564309, 9815.953282539, 8219.846763777, 13927.41988698, 8420.373979905, 14127.16615065, 3862.359524598, 6288.15625161, 4162.533113906, 6585.616091973, -22.67882018629, -199.7462636633, -297.4598403628, -474.5272838398]
EXPECTED: ['5.823898055191E+03', '9.793274462353E+03', '5.846917564309E+03', '9.815953282539E+03', '8.219846763777E+03', '1.392741988698E+04', '8.420373979905E+03', '1.412716615065E+04', '3.862359524598E+03', '6.288156251610E+03', '4.162533113906E+03', '6.585616091973E+03', '-2.267881997628E+01', '-1.997462580204E+02', '-2.974598331751E+02', '-4.745272868358E+02']
COMPUTED RESULT 5823.898055191
COMPUTED RESULT 9793.274462353
COMPUTED RESULT 5846.917564309
COMPUTED RESULT 9815.953282539
COMPUTED RESULT 8219.846763777
COMPUTED RESULT 13927.41988698
COMPUTED RESULT 8420.373979905
COMPUTED RESULT 14127.16615065
COMPUTED RESULT 3862.359524598
COMPUTED RESULT 6288.15625161
COMPUTED RESULT 4162.533113906
COMPUTED RESULT 6585.616091973
COMPUTED RESULT -22.67882018629
COMPUTED RESULT -199.7462636633
COMPUTED RESULT -297.4598403628
COMPUTED RESULT -474.5272838398
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acetic-acid.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.67e-16 e
Reading PQR-format atom data from acetate.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.00e+00 e
Reading PQR-format atom data from proton.pqr.
  1 atoms
  Centered at (1.780e-01, -1.286e+00, 2.937e+00)
  Net charge 1.00e+00 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 61.598 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.824172730822E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.793622759239E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.846917564309E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.815953282539E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.221328580569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.392867783119E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.420373979905E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.412716615065E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.863066835285E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #10 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.289649216644E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.162533113906E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.585616091973E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (acetic-solv) - 2 (acetic-ref) end
  Local net energy (PE 0) = -2.233052329981E+01 kJ/mol
  Global net ELEC energy = -2.233052329981E+01 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) end
  Local net energy (PE 0) = -1.984883194538E+02 kJ/mol
  Global net ELEC energy = -1.984883194538E+02 kJ/mol

print energy 5 (proton-solv) - 6 (proton-ref) end
  Local net energy (PE 0) = -2.959668753288E+02 kJ/mol
  Global net ELEC energy = -2.959668753288E+02 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) + 5 (proton-solv) - 6 (proton-ref) - 1 (acetic-solv) + 2 (acetic-ref) end
  Local net energy (PE 0) = -4.721246714828E+02 kJ/mol
  Global net ELEC energy = -4.721246714828E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 122.404 MB high water


Thanks for using APBS!

Testing computed result against expected result (5.824172730822e+03, 5.824172730822e+03)
*** PASSED ***
Testing computed result against expected result (9.793622759239e+03, 9.793622759239e+03)
*** PASSED ***
Testing computed result against expected result (5.846917564309e+03, 5.846917564309e+03)
*** PASSED ***
Testing computed result against expected result (9.815953282539e+03, 9.815953282539e+03)
*** PASSED ***
Testing computed result against expected result (8.221328580569e+03, 8.221328580569e+03)
*** PASSED ***
Testing computed result against expected result (1.392867783119e+04, 1.392867783119e+04)
*** PASSED ***
Testing computed result against expected result (8.420373979905e+03, 8.420373979905e+03)
*** PASSED ***
Testing computed result against expected result (1.412716615065e+04, 1.412716615065e+04)
*** PASSED ***
Testing computed result against expected result (3.863066835285e+03, 3.863066835285e+03)
*** PASSED ***
Testing computed result against expected result (6.289649216644e+03, 6.289649216644e+03)
*** PASSED ***
Testing computed result against expected result (4.162533113906e+03, 4.162533113906e+03)
*** PASSED ***
Testing computed result against expected result (6.585616091973e+03, 6.585616091973e+03)
*** PASSED ***
Testing computed result against expected result (-2.233052329981e+01, -2.233050451129e+01)
*** PASSED ***
Testing computed result against expected result (-1.984883194538e+02, -1.984883191396e+02)
*** PASSED ***
Testing computed result against expected result (-2.959668753288e+02, -2.959668653531e+02)
*** PASSED ***
Testing computed result against expected result (-4.721246714828e+02, -4.721247084138e+02)
*** PASSED ***
Elapsed time: 8.432328 seconds
--------------------------------------------------------------------------------
Total elapsed time: 17.424395 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file ion-pmf.in

Checking for intermediate energies in input file apbs-smol.out
EXPECTED COMPUTED: 16
EXPECTED EXPECTED: 16
COMPUTED: [5824.172730822, 9793.622759239, 5846.917564309, 9815.953282539, 8221.328580569, 13928.67783119, 8420.373979905, 14127.16615065, 3863.066835285, 6289.649216644, 4162.533113906, 6585.616091973, -22.33052329981, -198.4883194538, -295.9668753288, -472.1246714828]
EXPECTED: ['5.824172730822E+03', '9.793622759239E+03', '5.846917564309E+03', '9.815953282539E+03', '8.221328580569E+03', '1.392867783119E+04', '8.420373979905E+03', '1.412716615065E+04', '3.863066835285E+03', '6.289649216644E+03', '4.162533113906E+03', '6.585616091973E+03', '-2.233050451129E+01', '-1.984883191396E+02', '-2.959668653531E+02', '-4.721247084138E+02']
COMPUTED RESULT 5824.172730822
COMPUTED RESULT 9793.622759239
COMPUTED RESULT 5846.917564309
COMPUTED RESULT 9815.953282539
COMPUTED RESULT 8221.328580569
COMPUTED RESULT 13928.67783119
COMPUTED RESULT 8420.373979905
COMPUTED RESULT 14127.16615065
COMPUTED RESULT 3863.066835285
COMPUTED RESULT 6289.649216644
COMPUTED RESULT 4162.533113906
COMPUTED RESULT 6585.616091973
COMPUTED RESULT -22.33052329981
COMPUTED RESULT -198.4883194538
COMPUTED RESULT -295.9668753288
COMPUTED RESULT -472.1246714828
Running tests for ion-pmf section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   ion-pmf.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'ion-pmf.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file ion-pmf.in...
rank 0 size 1...
Parsed input file.
Reading parameter data from parm.dat.
Got paths for 1 molecules
Reading PDB-format atom data from ion-pmf.pdb.
Vpmg_ibForce:  No force for zero ionic strength!
Vpmg_ibForce:  No force for zero ionic strength!
  2 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.106 MB total, 61.106 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  All-atom solvent forces will be calculated
  Total electrostatic energy = 7.839535983197E+03 kJ/mol
  Calculating forces...
  Printing per-atom forces for molecule 1 (kJ/mol/A)
  Legend:
    tot n -- total force for atom n
    qf  n -- fixed charge force for atom n
    db  n -- dielectric boundary force for atom n
    ib  n -- ionic boundary force for atom n
mgF  tot 0  -3.760e+03  -4.398e-05  -7.763e-05
mgF  qf  0  -3.767e+03  -1.730e-05  -2.384e-05
mgF  ib  0  0.000e+00  0.000e+00  0.000e+00
mgF  db  0  6.148e+00  -2.668e-05  -5.379e-05
mgF  tot 1  -3.596e+03  -5.403e-05  -1.012e-04
mgF  qf  1  -3.598e+03  -2.253e-05  -3.831e-05
mgF  ib  1  0.000e+00  0.000e+00  0.000e+00
mgF  db  1  2.883e+00  -3.150e-05  -6.291e-05
Vpmg_ibForce:  No force for zero ionic strength!
Vpmg_ibForce:  No force for zero ionic strength!
----------------------------------------
CALCULATION #2 (ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.106 MB total, 61.155 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  All-atom solvent forces will be calculated
  Total electrostatic energy = 8.964727588811E+03 kJ/mol
  Calculating forces...
  Printing per-atom forces for molecule 1 (kJ/mol/A)
  Legend:
    tot n -- total force for atom n
    qf  n -- fixed charge force for atom n
    db  n -- dielectric boundary force for atom n
    ib  n -- ionic boundary force for atom n
mgF  tot 0  -3.850e+03  -4.055e-06  -7.703e-06
mgF  qf  0  -3.850e+03  -4.055e-06  -7.703e-06
mgF  ib  0  0.000e+00  0.000e+00  0.000e+00
mgF  db  0  0.000e+00  0.000e+00  0.000e+00
mgF  tot 1  -3.514e+03  -4.163e-06  -7.690e-06
mgF  qf  1  -3.514e+03  -4.163e-06  -7.690e-06
mgF  ib  1  0.000e+00  0.000e+00  0.000e+00
mgF  db  1  0.000e+00  0.000e+00  0.000e+00
----------------------------------------
CALCULATION #3 (asolv): APOLAR
  Printing per atom forces (kJ/mol/A)
  Legend:
    tot  n -- Total force for atom n
    sasa n -- SASA force for atom n
    sav  n -- SAV force for atom n
    wca  n -- WCA force for atom n

    gamma    0.000720
    pressure 0.000000
    bconc    0.033000 

  tot  0 2.715e-02 9.130e-07 9.128e-07
  sasa 0 -1.100e+01 0.000e+00 0.000e+00
  sav  0 0.000e+00 0.000e+00 0.000e+00
  wca  0 -5.827e-01 -2.767e-05 -2.766e-05
  tot  1 -2.723e-02 9.131e-07 9.134e-07
  sasa 1 1.112e+01 0.000e+00 0.000e+00
  sav  1 0.000e+00 0.000e+00 0.000e+00
  wca  1 5.827e-01 -2.767e-05 -2.768e-05


Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 1.153275282828E+02
  SASA for atom 1: 1.153114143344E+02

Total solvent accessible surface area: 230.639 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 8.303582036361E-02
  Surface tension*area energy for atom 1: 8.302421832080E-02

Total surface tension energy: 0.16606 kJ/mol

Total solvent accessible volume: 0 A^3

Total pressure*volume energy: 0 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.909718345777E+00
  WCA energy for atom 1: -6.909411348230E+00

Total WCA energy: -13.8191 kJ/mol

Total non-polar energy = -1.365306965532E+01 kJ/mol
----------------------------------------
PRINT STATEMENTS

print energy 1 (solv) - 2 (ref) end
  Local net energy (PE 0) = -1.125191605614E+03 kJ/mol
  Global net ELEC energy = -1.125191605614E+03 kJ/mol
print force 1 (solv) - 2 (ref) end
  Printing per-atom forces (kJ/mol/A).
  Legend:
    tot n -- Total force for atom n
    qf  n -- Fixed charge force for atom n
    db  n -- Dielectric boundary force for atom n
    ib  n -- Ionic boundary force for atom n
    tot all -- Total force for system
  qf  0  8.398642197664E+01  -1.324564203755E-05  -1.613436083011E-05
  ib  0  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  db  0  6.148357059184E+00  -2.667517416421E-05  -5.378919663831E-05
  tot 0  9.013477903582E+01  -3.992081620176E-05  -6.992355746842E-05
  qf  1  -8.466423642736E+01  -1.836748085161E-05  -3.062224261564E-05
  ib  1  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  db  1  2.882739230549E+00  -3.149946352664E-05  -6.291495498709E-05
  tot 1  -8.178149719681E+01  -4.986694437825E-05  -9.353719760273E-05
  tot all 8.353281839012E+00  -8.978776058001E-05  -1.634607550711E-04

print APOL energy 1 (asolv) end
  Global net APOL energy = -1.365306965532E+01 kJ/mol

print APOL force 1 (asolv) end
  Printing per atom forces (kJ/mol/A)
  Legend:
    tot   n -- Total force for atom n
    sasa  n -- SASA force for atom n
    sav   n -- SAV force for atom n
    wca   n -- WCA force for atom n
    tot all -- Total force for system
  sasa  0  -1.099776974333E+01  0.000000000000E+00  0.000000000000E+00
  sav   0  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  wca   0  -5.826577103767E-01  -2.766566538180E-05  -2.766098638935E-05
  tot   0  -1.158042745371E+01  -2.766566538180E-05  -2.766098638935E-05
  sasa  1  1.111862435589E+01  0.000000000000E+00  0.000000000000E+00
  sav   1  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  wca   1  5.826650307914E-01  -2.767034437463E-05  -2.767796940038E-05
  tot   1  1.170128938668E+01  -2.767034437463E-05  -2.767796940038E-05
  tot all  1.208619329787E-01  -5.533600975643E-05  -5.533895578973E-05
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 1 molecules
Final memory usage:  60.711 MB total, 62.250 MB high water


Thanks for using APBS!

Testing computed result against expected result (7.839535983197e+03, 7.839535983197e+03)
*** PASSED ***
Testing computed result against expected result (8.964727588811e+03, 8.964727588811e+03)
*** PASSED ***
Testing computed result against expected result (-1.125191605614e+03, -1.125192402906e+03)
*** PASSED ***
Elapsed time: 19.870004 seconds
--------------------------------------------------------------------------------
Total elapsed time: 19.870004 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-vdw.in

Checking for intermediate energies in input file ion-pmf.out
EXPECTED COMPUTED: 4
EXPECTED EXPECTED: 4
COMPUTED: [7839.535983197, 8964.727588811, -1125.191605614, -13.65306965532]
EXPECTED: ['7.839535983197E+03', '8.964727588811E+03', '-1.125192402906E+03', '*']
COMPUTED RESULT 7839.535983197
COMPUTED RESULT 8964.727588811
COMPUTED RESULT -1125.191605614
COMPUTED RESULT -13.65306965532
Running tests for pka-lig section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-vdw.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-vdw.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-vdw.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 204.292 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.224988750664E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.049695084686E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.818450789522E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.008254338259E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.840918409896E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 534.806 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.113304681884E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 8.083515648803E+00 kJ/mol
  Global net ELEC energy = 8.083515648803E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 534.806 MB high water


Thanks for using APBS!

Testing computed result against expected result (2.224988750664e+03, 2.224988750664e+03)
*** PASSED ***
Testing computed result against expected result (1.049695084686e+04, 1.049695084686e+04)
*** PASSED ***
Testing computed result against expected result (1.818450789522e+05, 1.818450789522e+05)
*** PASSED ***
Testing computed result against expected result (3.008254338259e+05, 3.008254338259e+05)
*** PASSED ***
Testing computed result against expected result (1.840918409896e+05, 1.840918409896e+05)
*** PASSED ***
Testing computed result against expected result (3.113304681884e+05, 3.113304681884e+05)
*** PASSED ***
Testing computed result against expected result (8.083515648803e+00, 8.083515648730e+00)
*** PASSED ***
Elapsed time: 37.234915 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-vdw.in

Checking for intermediate energies in input file apbs-mol-vdw.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [2224.988750664, 10496.95084686, 181845.0789522, 300825.4338259, 184091.8409896, 311330.4681884, 8.083515648803]
EXPECTED: ['2.224988750664E+03', '1.049695084686E+04', '1.818450789522E+05', '3.008254338259E+05', '1.840918409896E+05', '3.113304681884E+05', '8.083515648730E+00']
COMPUTED RESULT 2224.988750664
COMPUTED RESULT 10496.95084686
COMPUTED RESULT 181845.0789522
COMPUTED RESULT 300825.4338259
COMPUTED RESULT 184091.8409896
COMPUTED RESULT 311330.4681884
COMPUTED RESULT 8.083515648803
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-vdw.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-vdw.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-vdw.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 204.292 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.226793167046E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.050504485887E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.827976621645E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.017228546773E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.850819075387E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 534.806 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.122488625388E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 2.096300255720E+01 kJ/mol
  Global net ELEC energy = 2.096300255720E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 534.806 MB high water


Thanks for using APBS!

Testing computed result against expected result (2.226793167046e+03, 2.226793167046e+03)
*** PASSED ***
Testing computed result against expected result (1.050504485887e+04, 1.050504485887e+04)
*** PASSED ***
Testing computed result against expected result (1.827976621645e+05, 1.827976621645e+05)
*** PASSED ***
Testing computed result against expected result (3.017228546773e+05, 3.017228546773e+05)
*** PASSED ***
Testing computed result against expected result (1.850819075387e+05, 1.850819075387e+05)
*** PASSED ***
Testing computed result against expected result (3.122488625388e+05, 3.122488625388e+05)
*** PASSED ***
Testing computed result against expected result (2.096300255720e+01, 2.096296139195e+01)
*** PASSED ***
Elapsed time: 29.472536 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-surf.in

Checking for intermediate energies in input file apbs-smol-vdw.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [2226.793167046, 10505.04485887, 182797.6621645, 301722.8546773, 185081.9075387, 312248.8625388, 20.9630025572]
EXPECTED: ['2.226793167046E+03', '1.050504485887E+04', '1.827976621645E+05', '3.017228546773E+05', '1.850819075387E+05', '3.122488625388E+05', '2.096296139195E+01']
COMPUTED RESULT 2226.793167046
COMPUTED RESULT 10505.04485887
COMPUTED RESULT 182797.6621645
COMPUTED RESULT 301722.8546773
COMPUTED RESULT 185081.9075387
COMPUTED RESULT 312248.8625388
COMPUTED RESULT 20.9630025572
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol-surf.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol-surf.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol-surf.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 203.877 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.244350164274E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.052149475373E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.862615690066E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.051810884053E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.886625455219E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 494.601 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.158218439277E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 1.192607686582E+02 kJ/mol
  Global net ELEC energy = 1.192607686582E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 494.601 MB high water


Thanks for using APBS!

Testing computed result against expected result (2.244350164274e+03, 2.244350164274e+03)
*** PASSED ***
Testing computed result against expected result (1.052149475373e+04, 1.052149475373e+04)
*** PASSED ***
Testing computed result against expected result (1.862615690066e+05, 1.862615690066e+05)
*** PASSED ***
Testing computed result against expected result (3.051810884053e+05, 3.051810884053e+05)
*** PASSED ***
Testing computed result against expected result (1.886625455219e+05, 1.886625455219e+05)
*** PASSED ***
Testing computed result against expected result (3.158218439277e+05, 3.158218439277e+05)
*** PASSED ***
Testing computed result against expected result (1.192607686582e+02, 1.192608095265e+02)
*** PASSED ***
Elapsed time: 29.160482000000002 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-surf.in

Checking for intermediate energies in input file apbs-mol-surf.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [2244.350164274, 10521.49475373, 186261.5690066, 305181.0884053, 188662.5455219, 315821.8439277, 119.2607686582]
EXPECTED: ['2.244350164274E+03', '1.052149475373E+04', '1.862615690066E+05', '3.051810884053E+05', '1.886625455219E+05', '3.158218439277E+05', '1.192608095265E+02']
COMPUTED RESULT 2244.350164274
COMPUTED RESULT 10521.49475373
COMPUTED RESULT 186261.5690066
COMPUTED RESULT 305181.0884053
COMPUTED RESULT 188662.5455219
COMPUTED RESULT 315821.8439277
COMPUTED RESULT 119.2607686582
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol-surf.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol-surf.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol-surf.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 203.877 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.251466789420E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.052814502873E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.864071689626E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.053319953673E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.888027142979E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 494.601 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.159690177241E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 1.088773280806E+02 kJ/mol
  Global net ELEC energy = 1.088773280806E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 494.601 MB high water


Thanks for using APBS!

Testing computed result against expected result (2.251466789420e+03, 2.251466789420e+03)
*** PASSED ***
Testing computed result against expected result (1.052814502873e+04, 1.052814502873e+04)
*** PASSED ***
Testing computed result against expected result (1.864071689626e+05, 1.864071689626e+05)
*** PASSED ***
Testing computed result against expected result (3.053319953673e+05, 3.053319953673e+05)
*** PASSED ***
Testing computed result against expected result (1.888027142979e+05, 1.888027142979e+05)
*** PASSED ***
Testing computed result against expected result (3.159690177241e+05, 3.159690177241e+05)
*** PASSED ***
Testing computed result against expected result (1.088773280806e+02, 1.088773280806e+02)
*** PASSED ***
Elapsed time: 25.82147 seconds
--------------------------------------------------------------------------------
Total elapsed time: 121.689403 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_1.in

Checking for intermediate energies in input file apbs-smol-surf.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [2251.46678942, 10528.14502873, 186407.1689626, 305331.9953673, 188802.7142979, 315969.0177241, 108.8773280806]
EXPECTED: ['2.251466789420E+03', '1.052814502873E+04', '1.864071689626E+05', '3.053319953673E+05', '1.888027142979E+05', '3.159690177241E+05', '1.088773280806E+02']
COMPUTED RESULT 2251.46678942
COMPUTED RESULT 10528.14502873
COMPUTED RESULT 186407.1689626
COMPUTED RESULT 305331.9953673
COMPUTED RESULT 188802.7142979
COMPUTED RESULT 315969.0177241
COMPUTED RESULT 108.8773280806
Running tests for point-pmf section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   complex-0_1.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'complex-0_1.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file complex-0_1.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-2.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_1.pqr.
  2 atoms
  Centered at (-2.500e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.975920687031E+01 kJ/mol
  Fixed charge energy = 89.7592 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 88.6151 kJ/mol
  Per-atom energies:
      Atom 0:  8.975920687031E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.058277719334E+02 kJ/mol
  Fixed charge energy = 205.828 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 201.106 kJ/mol
  Per-atom energies:
      Atom 0:  1.069144350786E+02 kJ/mol
      Atom 1:  9.891333685475E+01 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 1.830820799027E+01 kJ/mol
  Global net ELEC energy = 1.830820799027E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.067 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.776035707281e+01, 9.776035707281e+01)
*** PASSED ***
Testing computed result against expected result (8.975920687031e+01, 8.975920687031e+01)
*** PASSED ***
Testing computed result against expected result (2.058277719334e+02, 2.058277719334e+02)
*** PASSED ***
Testing computed result against expected result (9.776040000000e+01, 9.776040000000e+01)
*** PASSED ***
Testing computed result against expected result (8.975920000000e+01, 8.975920000000e+01)
*** PASSED ***
Testing computed result against expected result (2.058280000000e+02, 2.058280000000e+02)
*** PASSED ***
Testing computed result against expected result (9.653360000000e+01, 9.653360000000e+01)
*** PASSED ***
Testing computed result against expected result (8.861510000000e+01, 8.861510000000e+01)
*** PASSED ***
Testing computed result against expected result (2.011060000000e+02, 2.011060000000e+02)
*** PASSED ***
Testing computed result against expected result (1.830820799027e+01, 1.830820799027e+01)
*** PASSED ***
Elapsed time: 1.368239 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_2.in

Checking for intermediate energies in input file complex-0_1.out
EXPECTED COMPUTED: 13
EXPECTED EXPECTED: 13
COMPUTED: [97.76035707281, 89.75920687031, 205.8277719334, 0.0, 0.0, 0.0, 97.7604, 89.7592, 205.828, 96.5336, 88.6151, 201.106, 18.30820799027]
EXPECTED: ['9.776035707281E+01', '8.975920687031E+01', '2.058277719334E+02', '*', '*', '*', '97.7604', '89.7592', '205.828', '96.5336', '88.6151', '201.106', '1.830820799027E+01']
COMPUTED RESULT 97.76035707281
COMPUTED RESULT 89.75920687031
COMPUTED RESULT 205.8277719334
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 97.7604
COMPUTED RESULT 89.7592
COMPUTED RESULT 205.828
COMPUTED RESULT 96.5336
COMPUTED RESULT 88.6151
COMPUTED RESULT 201.106
COMPUTED RESULT 18.30820799027
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   complex-0_2.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'complex-0_2.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file complex-0_2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_2.pqr.
  2 atoms
  Centered at (-2.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.017611498797E+02 kJ/mol
  Fixed charge energy = 101.761 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 100.656 kJ/mol
  Per-atom energies:
      Atom 0:  1.017611498797E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.084282010393E+02 kJ/mol
  Fixed charge energy = 208.428 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 203.83 kJ/mol
  Per-atom energies:
      Atom 0:  1.022136878480E+02 kJ/mol
      Atom 1:  1.062145131913E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 8.906694086751E+00 kJ/mol
  Global net ELEC energy = 8.906694086751E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.776035707281e+01, 9.776035707281e+01)
*** PASSED ***
Testing computed result against expected result (1.017611498797e+02, 1.017611498797e+02)
*** PASSED ***
Testing computed result against expected result (2.084282010393e+02, 2.084282010393e+02)
*** PASSED ***
Testing computed result against expected result (9.776040000000e+01, 9.776040000000e+01)
*** PASSED ***
Testing computed result against expected result (1.017610000000e+02, 1.017610000000e+02)
*** PASSED ***
Testing computed result against expected result (2.084280000000e+02, 2.084280000000e+02)
*** PASSED ***
Testing computed result against expected result (9.653360000000e+01, 9.653360000000e+01)
*** PASSED ***
Testing computed result against expected result (1.006560000000e+02, 1.006560000000e+02)
*** PASSED ***
Testing computed result against expected result (2.038300000000e+02, 2.038300000000e+02)
*** PASSED ***
Testing computed result against expected result (8.906694086751e+00, 8.906694086750e+00)
*** PASSED ***
Elapsed time: 1.4594719999999999 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_3.in

Checking for intermediate energies in input file complex-0_2.out
EXPECTED COMPUTED: 13
EXPECTED EXPECTED: 13
COMPUTED: [97.76035707281, 101.7611498797, 208.4282010393, 0.0, 0.0, 0.0, 97.7604, 101.761, 208.428, 96.5336, 100.656, 203.83, 8.906694086751]
EXPECTED: ['9.776035707281E+01', '1.017611498797E+02', '2.084282010393E+02', '*', '*', '*', '97.7604', '101.761', '208.428', '96.5336', '100.656', '203.83', '8.906694086750E+00']
COMPUTED RESULT 97.76035707281
COMPUTED RESULT 101.7611498797
COMPUTED RESULT 208.4282010393
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 97.7604
COMPUTED RESULT 101.761
COMPUTED RESULT 208.428
COMPUTED RESULT 96.5336
COMPUTED RESULT 100.656
COMPUTED RESULT 203.83
COMPUTED RESULT 8.906694086751
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   complex-0_3.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'complex-0_3.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file complex-0_3.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol3.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_3.pqr.
  2 atoms
  Centered at (-1.500e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.337661883222E+02 kJ/mol
  Fixed charge energy = 133.766 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 132.672 kJ/mol
  Per-atom energies:
      Atom 0:  1.337661883222E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.374361452120E+02 kJ/mol
  Fixed charge energy = 237.436 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 232.924 kJ/mol
  Per-atom energies:
      Atom 0:  1.007151570480E+02 kJ/mol
      Atom 1:  1.367209881640E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 5.909599816984E+00 kJ/mol
  Global net ELEC energy = 5.909599816984E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.776035707281e+01, 9.776035707281e+01)
*** PASSED ***
Testing computed result against expected result (1.337661883222e+02, 1.337661883222e+02)
*** PASSED ***
Testing computed result against expected result (2.374361452120e+02, 2.374361452120e+02)
*** PASSED ***
Testing computed result against expected result (9.776040000000e+01, 9.776040000000e+01)
*** PASSED ***
Testing computed result against expected result (1.337660000000e+02, 1.337660000000e+02)
*** PASSED ***
Testing computed result against expected result (2.374360000000e+02, 2.374360000000e+02)
*** PASSED ***
Testing computed result against expected result (9.653360000000e+01, 9.653360000000e+01)
*** PASSED ***
Testing computed result against expected result (1.326720000000e+02, 1.326720000000e+02)
*** PASSED ***
Testing computed result against expected result (2.329240000000e+02, 2.329240000000e+02)
*** PASSED ***
Testing computed result against expected result (5.909599816984e+00, 5.909599816984e+00)
*** PASSED ***
Elapsed time: 1.355567 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_4.in

Checking for intermediate energies in input file complex-0_3.out
EXPECTED COMPUTED: 13
EXPECTED EXPECTED: 13
COMPUTED: [97.76035707281, 133.7661883222, 237.436145212, 0.0, 0.0, 0.0, 97.7604, 133.766, 237.436, 96.5336, 132.672, 232.924, 5.909599816984]
EXPECTED: ['9.776035707281E+01', '1.337661883222E+02', '2.374361452120E+02', '*', '*', '*', '97.7604', '133.766', '237.436', '96.5336', '132.672', '232.924', '5.909599816984E+00']
COMPUTED RESULT 97.76035707281
COMPUTED RESULT 133.7661883222
COMPUTED RESULT 237.436145212
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 97.7604
COMPUTED RESULT 133.766
COMPUTED RESULT 237.436
COMPUTED RESULT 96.5336
COMPUTED RESULT 132.672
COMPUTED RESULT 232.924
COMPUTED RESULT 5.909599816984
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   complex-0_4.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'complex-0_4.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file complex-0_4.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol4.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_4.pqr.
  2 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.017611498797E+02 kJ/mol
  Fixed charge energy = 101.761 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 100.654 kJ/mol
  Per-atom energies:
      Atom 0:  1.017611498797E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.061 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.039516519000E+02 kJ/mol
  Fixed charge energy = 203.952 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 199.493 kJ/mol
  Per-atom energies:
      Atom 0:  9.997541697022E+01 kJ/mol
      Atom 1:  1.039762349297E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 4.430144947418E+00 kJ/mol
  Global net ELEC energy = 4.430144947418E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Testing computed result against expected result (9.776035707281e+01, 9.776035707281e+01)
*** PASSED ***
Testing computed result against expected result (1.017611498797e+02, 1.017611498797e+02)
*** PASSED ***
Testing computed result against expected result (2.039516519000e+02, 2.039516519000e+02)
*** PASSED ***
Testing computed result against expected result (9.776040000000e+01, 9.776040000000e+01)
*** PASSED ***
Testing computed result against expected result (1.017610000000e+02, 1.017610000000e+02)
*** PASSED ***
Testing computed result against expected result (2.039520000000e+02, 2.039520000000e+02)
*** PASSED ***
Testing computed result against expected result (9.653360000000e+01, 9.653360000000e+01)
*** PASSED ***
Testing computed result against expected result (1.006540000000e+02, 1.006540000000e+02)
*** PASSED ***
Testing computed result against expected result (1.994930000000e+02, 1.994930000000e+02)
*** PASSED ***
Testing computed result against expected result (4.430144947418e+00, 4.430144947418e+00)
*** PASSED ***
Elapsed time: 1.399631 seconds
--------------------------------------------------------------------------------
Total elapsed time: 5.582909 seconds
Test results have been logged
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

Checking for intermediate energies in input file complex-0_4.out
EXPECTED COMPUTED: 13
EXPECTED EXPECTED: 13
COMPUTED: [97.76035707281, 101.7611498797, 203.9516519, 0.0, 0.0, 0.0, 97.7604, 101.761, 203.952, 96.5336, 100.654, 199.493, 4.430144947418]
EXPECTED: ['9.776035707281E+01', '1.017611498797E+02', '2.039516519000E+02', '*', '*', '*', '97.7604', '101.761', '203.952', '96.5336', '100.654', '199.493', '4.430144947418E+00']
COMPUTED RESULT 97.76035707281
COMPUTED RESULT 101.7611498797
COMPUTED RESULT 203.9516519
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 0.0
COMPUTED RESULT 97.7604
COMPUTED RESULT 101.761
COMPUTED RESULT 203.952
COMPUTED RESULT 96.5336
COMPUTED RESULT 100.654
COMPUTED RESULT 199.493
COMPUTED RESULT 4.430144947418
Running tests for solv section
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-mol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-mol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 2 molecules
Reading PQR-format atom data from methanol.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3 atoms
  Centered at (3.086e-01, 0.000e+00, -2.417e-01)
  Net charge 5.55e-17 e
Reading PQR-format atom data from methoxide.pqr.
  2 atoms
  Centered at (0.000e+00, 0.000e+00, -1.279e-01)
  Net charge -1.00e+00 e
Preparing to run 4 PBE calculations.
----------------------------------------
CALCULATION #1 (methanol-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.253 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.847663548071E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (methanol-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.883912182952E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (methoxide-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.732623683321E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (methoxide-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.123035854133E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (methanol-solv) - 2 (methanol-ref) end
  Local net energy (PE 0) = -3.624863488075E+01 kJ/mol
  Global net ELEC energy = -3.624863488075E+01 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) end
  Local net energy (PE 0) = -3.904121708125E+02 kJ/mol
  Global net ELEC energy = -3.904121708125E+02 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) - 1 (methanol-solv) + 2 (methanol-ref) end
  Local net energy (PE 0) = -3.541635359318E+02 kJ/mol
  Global net ELEC energy = -3.541635359318E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 2 molecules
Final memory usage:  0.001 MB total, 61.328 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.847663548071e+03, 1.847663548071e+03)
*** PASSED ***
Testing computed result against expected result (1.883912182952e+03, 1.883912182952e+03)
*** PASSED ***
Testing computed result against expected result (2.732623683321e+03, 2.732623683321e+03)
*** PASSED ***
Testing computed result against expected result (3.123035854133e+03, 3.123035854133e+03)
*** PASSED ***
Testing computed result against expected result (-3.624863488075e+01, -3.624863445503e+01)
*** PASSED ***
Testing computed result against expected result (-3.904121708125e+02, -3.904121297757e+02)
*** PASSED ***
Testing computed result against expected result (-3.541635359318e+02, -3.541635359318e+02)
*** PASSED ***
Elapsed time: 2.025016 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

Checking for intermediate energies in input file apbs-mol.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [1847.663548071, 1883.912182952, 2732.623683321, 3123.035854133, -36.24863488075, -390.4121708125, -354.1635359318]
EXPECTED: ['1.847663548071E+03', '1.883912182952E+03', '2.732623683321E+03', '3.123035854133E+03', '-3.624863445503E+01', '-3.904121297757E+02', '-3.541635359318E+02']
COMPUTED RESULT 1847.663548071
COMPUTED RESULT 1883.912182952
COMPUTED RESULT 2732.623683321
COMPUTED RESULT 3123.035854133
COMPUTED RESULT -36.24863488075
COMPUTED RESULT -390.4121708125
COMPUTED RESULT -354.1635359318
BINARY:  /<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs
INPUT:   apbs-smol.in
COMMAND: ['/<<PKGBUILDDIR>>/debian/tmp/usr/bin/apbs', 'apbs-smol.in']
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version APBS 3.4.1
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Mar 31 2024 at 17:39:33

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 2 molecules
Reading PQR-format atom data from methanol.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3 atoms
  Centered at (3.086e-01, 0.000e+00, -2.417e-01)
  Net charge 5.55e-17 e
Reading PQR-format atom data from methoxide.pqr.
  2 atoms
  Centered at (0.000e+00, 0.000e+00, -1.279e-01)
  Net charge -1.00e+00 e
Preparing to run 4 PBE calculations.
----------------------------------------
CALCULATION #1 (methanol-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.253 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.847860440020E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (methanol-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.885436377745E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (methoxide-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.734040568569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (methoxide-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.125279428954E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (methanol-solv) - 2 (methanol-ref) end
  Local net energy (PE 0) = -3.757593772492E+01 kJ/mol
  Global net ELEC energy = -3.757593772492E+01 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) end
  Local net energy (PE 0) = -3.912388603848E+02 kJ/mol
  Global net ELEC energy = -3.912388603848E+02 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) - 1 (methanol-solv) + 2 (methanol-ref) end
  Local net energy (PE 0) = -3.536629226599E+02 kJ/mol
  Global net ELEC energy = -3.536629226599E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying finite element structures.
Destroying 2 molecules
Final memory usage:  0.001 MB total, 61.328 MB high water


Thanks for using APBS!

Testing computed result against expected result (1.847860440020e+03, 1.847860440020e+03)
*** PASSED ***
Testing computed result against expected result (1.885436377745e+03, 1.885436377745e+03)
*** PASSED ***
Testing computed result against expected result (2.734040568569e+03, 2.734040568569e+03)
*** PASSED ***
Testing computed result against expected result (3.125279428954e+03, 3.125279428954e+03)
*** PASSED ***
Testing computed result against expected result (-3.757593772492e+01, -3.757593797629e+01)
*** PASSED ***
Testing computed result against expected result (-3.912388603848e+02, -3.912388198513e+02)
*** PASSED ***
Testing computed result against expected result (-3.536629226599e+02, -3.536628818750e+02)
*** PASSED ***
Elapsed time: 2.070946 seconds
--------------------------------------------------------------------------------
Total elapsed time: 4.095962 seconds
Test results have been logged
--------------------------------------------------------------------------------
Checking for intermediate energies in input file apbs-smol.out
EXPECTED COMPUTED: 7
EXPECTED EXPECTED: 7
COMPUTED: [1847.86044002, 1885.436377745, 2734.040568569, 3125.279428954, -37.57593772492, -391.2388603848, -353.6629226599]
EXPECTED: ['1.847860440020E+03', '1.885436377745E+03', '2.734040568569E+03', '3.125279428954E+03', '-3.757593797629E+01', '-3.912388198513E+02', '-3.536628818750E+02']
COMPUTED RESULT 1847.86044002
COMPUTED RESULT 1885.436377745
COMPUTED RESULT 2734.040568569
COMPUTED RESULT 3125.279428954
COMPUTED RESULT -37.57593772492
COMPUTED RESULT -391.2388603848
COMPUTED RESULT -353.6629226599
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a -O--buildsystem=cmake
   dh_installdocs -a -O--buildsystem=cmake
   dh_sphinxdoc -a -O--buildsystem=cmake
dh_sphinxdoc: warning: Sphinx documentation not found
   dh_installchangelogs -a -O--buildsystem=cmake
   dh_installman -a -O--buildsystem=cmake
   dh_python3 -a -O--buildsystem=cmake
I: dh_python3 fs:418: renaming _apbslib.so to _apbslib.cpython-312-aarch64-linux-gnu.so
   dh_installsystemduser -a -O--buildsystem=cmake
   dh_lintian -a -O--buildsystem=cmake
   dh_perl -a -O--buildsystem=cmake
   dh_link -a -O--buildsystem=cmake
   dh_strip_nondeterminism -a -O--buildsystem=cmake
   dh_compress -a -O--buildsystem=cmake
   dh_fixperms -a -O--buildsystem=cmake
   dh_missing -a -O--buildsystem=cmake
   dh_dwz -a -O--buildsystem=cmake
dwz: debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libmc.so.1.9.3: DWARF compression not beneficial - old size 484142 new size 487745
dwz: debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3: DWARF compression not beneficial - old size 93243 new size 93706
dwz: debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libgamer.so.1.9.3: DWARF compression not beneficial - old size 985010 new size 987088
dwz: debian/python3-apbslib/usr/lib/python3/dist-packages/apbs.cpython-312-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 4457265 new size 4457321
   dh_strip -a -O--buildsystem=cmake
debugedit: debian/apbs/usr/bin/apbs: Unknown DWARF DW_FORM_0x1f20
56a94a78df67fe5f4f1fdf74844816f1f36a22c6
debugedit: debian/libapbs3t64/usr/lib/aarch64-linux-gnu/libapbs_generic.so.3: Unknown DWARF DW_FORM_0x1f20
0256f16830730578be9806d44d74fbfea8a87ab3
debugedit: debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libpunc.so.1.9.3: Unknown DWARF DW_FORM_0x1f21
9bd622f41030fd38d91cbe3d18157da77ba15d76
debugedit: debian/apbs/usr/lib/apbs/tools/bin/benchmark: Unknown DWARF DW_FORM_0x1f20
8d5575a6d460c0f47db68d1eee8f236844701766
dbcb49912fd8b1bef867ae423f73a5acf8252727
debugedit: debian/libapbs3t64/usr/lib/aarch64-linux-gnu/libapbs_pmgc.so.3: Unknown DWARF DW_FORM_0x1f20
b3b056b43a292867ded48f9b02f4606547003b0b
debugedit: debian/apbs/usr/lib/apbs/tools/bin/dxmath: Unknown DWARF DW_FORM_0x1f21
fa63fb681bcad3ec9d746dd3ba7c2a8e9ada5b73
debugedit: debian/apbs/usr/lib/apbs/tools/bin/mergedx2: Unknown DWARF DW_FORM_0x1f20
c68ccd09755c4e49ca37f2c7fa051d20e717a12c
debugedit: debian/libapbs3t64/usr/lib/aarch64-linux-gnu/libapbs_fem.so.3: Unknown DWARF DW_FORM_0x1f21
fc8e4414efbeb4144fc3245cb313b38ccd147941
f69704d52e763e5935072a64df80e5ec0b137c31
debugedit: debian/apbs/usr/lib/apbs/tools/bin/mgmesh: Unknown DWARF DW_FORM_0x1f20
9099a3b7caacf254c611cffd89d78e70db0b0e93
debugedit: debian/libapbs3t64/usr/lib/aarch64-linux-gnu/libapbs_mg.so.3: Unknown DWARF DW_FORM_0x1f21
7426f19006ec282026aedaeb93dec3e1f30c48b7
debugedit: debian/apbs/usr/lib/apbs/tools/bin/value: Unknown DWARF DW_FORM_0x1f20
65fc29725b9be2a5481e4968f81f8ff9608c2504
debugedit: debugedit: debian/libapbs3t64/usr/lib/aarch64-linux-gnu/libapbs_routines.so.3: Unknown DWARF DW_FORM_0x1f20
debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd: Unknown DWARF DW_FORM_0x1f20
9240b4dba015ea5cdc6906df097edc26b428dd8b
b54b5ada839baeef7ba5d9486a93628193868f01
debugedit: debian/apbs/usr/lib/apbs/tools/bin/del2dx: Unknown DWARF DW_FORM_0x1f20
50b18d5486867a2b2d303abf31afde9501bf1ec5
debugedit: debian/apbs/usr/lib/apbs/tools/bin/tensor2dx: Unknown DWARF DW_FORM_0x1f20
2ca69e351f3968112b1d3b20521d0f5745b625ce
debugedit: debian/apbs/usr/lib/apbs/tools/bin/analysis: Unknown DWARF DW_FORM_0x1f20
09dc1064e36f6f68d5853727a278956173e3df12
debugedit: debian/apbs/usr/lib/apbs/tools/bin/coulomb: Unknown DWARF DW_FORM_0x1f20
a9fc12d3ff2b586476f1ac05cacec47f73d24a44
2a5d749c8e9a454c48479ab8e08ac37effb80e44
debugedit: debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin: Unknown DWARF DW_FORM_0x1f20
e1486b17a713ddba91bcb1685462d39f572cb5e6
debugedit: debian/apbs/usr/lib/apbs/tools/bin/dx2mol: Unknown DWARF DW_FORM_0x1f20
42ff1c698f8a5f83f9b89e5b504e908c15ef30c8
debugedit: debian/apbs/usr/lib/apbs/tools/bin/mergedx: Unknown DWARF DW_FORM_0x1f20
70d7f52eea9ce48ba002de3cb24cbd61581f243b
debugedit: debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3: Unknown DWARF DW_FORM_0x1f20
ed357d0acbfff061a6ed0953f0042adbb69b1485
debugedit: debian/apbs/usr/lib/apbs/tools/bin/smooth: Unknown DWARF DW_FORM_0x1f20
950e336aeb86f2fd93b3a0a2245797ae34fc46ca
debugedit: debian/apbs/usr/lib/apbs/tools/bin/multivalue: Unknown DWARF DW_FORM_0x1f20
77a98c1357aaccaf0e65d9e8cb94099f7b09d23e
debugedit: debian/apbs/usr/lib/apbs/tools/bin/similarity: Unknown DWARF DW_FORM_0x1f20
68be073d2f17ec5901031b01665073f0633914d2
debugedit: debian/apbs/usr/lib/apbs/tools/bin/born: Unknown DWARF DW_FORM_0x1f20
27f67c1cf401de998671bcb45ae230a23079318d
66500431cb8de08b6ca96e2b6143d4e0bbb00b86
debugedit: debian/python3-apbslib/usr/lib/python3/dist-packages/apbslib/_apbslib.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21
22a5fbc6427f560f7a7e250e4d3a7ae3b730f869
   dh_makeshlibs -a -O--buildsystem=cmake
   dh_shlibdeps -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: symbol snrm2_ used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol s_stop used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol sqrtf used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol ddot_ used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol pow_ri used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol pow_di used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol saxpy_ used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol dcopy_ used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol pow_dd used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol log used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: symbol erf used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol atan2 used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol sinh used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol sincos used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol log used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol sin used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol tan used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol asin used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol cosh used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: symbol sqrt used by debian/libfetk1.9t64/usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcolamd.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libamd.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcamd.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libvf2c.so.1.9 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcholmod.so.5 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libccolamd.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libpunc.so.1.9 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libgomp.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libmc.so.1.9 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libsuperlu.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libsuitesparseconfig.so.7 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libspqr.so.4 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libumfpack.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libblas.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libmpi.so.40 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libarpack.so.2 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libstdc++.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libapbs_fem.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcgcode.so.1.9 (they use none of the library's symbols)
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -a -O--buildsystem=cmake
   dh_gencontrol -a -O--buildsystem=cmake
dpkg-gencontrol: warning: Depends field of package apbs: substitution variable ${sphinxdoc:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package libfetk-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package libapbs-dev: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums -a -O--buildsystem=cmake
   dh_builddeb -a -O--buildsystem=cmake
INFO: pkgstriptranslations version 154
INFO: pkgstriptranslations version 154
INFO: pkgstriptranslations version 154
pkgstriptranslations: processing libfetk-dev (in debian/libfetk-dev); do_strip: , oemstrip: 
pkgstriptranslations: processing libapbs-dev (in debian/libapbs-dev); do_strip: , oemstrip: 
pkgstriptranslations: processing apbs (in debian/apbs); do_strip: , oemstrip: 
pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com
pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com
pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com
pkgstripfiles: processing control file: debian/libfetk-dev/DEBIAN/control, package libfetk-dev, directory debian/libfetk-dev
INFO: pkgstripfiles: waiting for lock (libfetk-dev) ...
pkgstripfiles: processing control file: debian/libapbs-dev/DEBIAN/control, package libapbs-dev, directory debian/libapbs-dev
pkgstripfiles: processing control file: debian/apbs/DEBIAN/control, package apbs, directory debian/apbs
.. removing usr/share/doc/libapbs-dev/ChangeLog.md
.. removing usr/share/doc/apbs/ChangeLog.md
INFO: pkgstripfiles: waiting for lock (libapbs-dev) ...
Searching for duplicated docs in dependency libapbs3t64...
  symlinking changelog.Debian.gz in apbs to file in libapbs3t64
Searching for duplicated docs in dependency libfetk1.9t64...
pkgstripfiles: Running PNG optimization (using 4 cpus) for package apbs ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'apbs' in '../apbs_3.4.1-5.1ubuntu2_arm64.deb'.
INFO: pkgstripfiles: waiting for lock (libfetk-dev) ...
INFO: pkgstriptranslations version 154
INFO: pkgstripfiles: waiting for lock (libapbs-dev) ...
pkgstriptranslations: processing python3-apbslib (in debian/python3-apbslib); do_strip: , oemstrip: 
pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com
INFO: pkgstripfiles: waiting for lock (libfetk-dev) ...
INFO: pkgstripfiles: waiting for lock (libapbs-dev) ...
pkgstripfiles: processing control file: debian/python3-apbslib/DEBIAN/control, package python3-apbslib, directory debian/python3-apbslib
Searching for duplicated docs in dependency libapbs3t64...
  symlinking changelog.Debian.gz in python3-apbslib to file in libapbs3t64
pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-apbslib ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'python3-apbslib' in '../python3-apbslib_3.4.1-5.1ubuntu2_arm64.deb'.
INFO: pkgstripfiles: waiting for lock (libfetk-dev) ...
Searching for duplicated docs in dependency libapbs3t64...
  symlinking changelog.Debian.gz in libapbs-dev to file in libapbs3t64
pkgstripfiles: Running PNG optimization (using 4 cpus) for package libapbs-dev ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'libapbs-dev' in '../libapbs-dev_3.4.1-5.1ubuntu2_arm64.deb'.
INFO: pkgstripfiles: waiting for lock (libfetk-dev) ...
INFO: pkgstriptranslations version 154
pkgstriptranslations: processing libapbs3t64 (in debian/libapbs3t64); do_strip: , oemstrip: 
pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com
INFO: pkgstripfiles: waiting for lock (libfetk-dev) ...
pkgstripfiles: processing control file: debian/libapbs3t64/DEBIAN/control, package libapbs3t64, directory debian/libapbs3t64
Searching for duplicated docs in dependency libfetk1.9t64...
  symlinking changelog.Debian.gz in libapbs3t64 to file in libfetk1.9t64
pkgstripfiles: Running PNG optimization (using 4 cpus) for package libapbs3t64 ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'libapbs3t64' in '../libapbs3t64_3.4.1-5.1ubuntu2_arm64.deb'.
Searching for duplicated docs in dependency libfetk1.9t64...
  symlinking changelog.Debian.gz in libfetk-dev to file in libfetk1.9t64
pkgstripfiles: Running PNG optimization (using 4 cpus) for package libfetk-dev ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'libfetk-dev' in '../libfetk-dev_3.4.1-5.1ubuntu2_arm64.deb'.
INFO: pkgstriptranslations version 154
pkgstriptranslations: processing libfetk1.9t64 (in debian/libfetk1.9t64); do_strip: , oemstrip: 
pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com
pkgstripfiles: processing control file: debian/libfetk1.9t64/DEBIAN/control, package libfetk1.9t64, directory debian/libfetk1.9t64
pkgstripfiles: Running PNG optimization (using 4 cpus) for package libfetk1.9t64 ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'libfetk1.9t64' in '../libfetk1.9t64_3.4.1-5.1ubuntu2_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../apbs_3.4.1-5.1ubuntu2_arm64.buildinfo
 dpkg-genchanges --build=any -mLaunchpad Build Daemon <buildd@bos01-arm64-028.buildd> -O../apbs_3.4.1-5.1ubuntu2_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-05-12T13:13:19Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


apbs_3.4.1-5.1ubuntu2_arm64.changes:
------------------------------------

Format: 1.8
Date: Sun, 31 Mar 2024 17:39:33 +0000
Source: apbs
Binary: apbs libapbs-dev libapbs3t64 libfetk-dev libfetk1.9t64 python3-apbslib
Built-For-Profiles: noudeb
Architecture: arm64
Version: 3.4.1-5.1ubuntu2
Distribution: noble
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@bos01-arm64-028.buildd>
Changed-By: Steve Langasek <steve.langasek@ubuntu.com>
Description:
 apbs       - Adaptive Poisson Boltzmann Solver
 libapbs-dev - Adaptive Poisson Boltzmann Solver
 libapbs3t64 - Adaptive Poisson Boltzmann Solver
 libfetk-dev - FETK libraries for APBS (development headers)
 libfetk1.9t64 - FETK libraries for APBS (shared libraries)
 python3-apbslib - Adaptive Poisson Boltzmann Solver
Changes:
 apbs (3.4.1-5.1ubuntu2) noble; urgency=medium
 .
   * No-change rebuild for CVE-2024-3094
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Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
/<<BUILDDIR>>/apbs_3.4.1-5.1ubuntu2_arm64.changes.new could not be renamed to /<<BUILDDIR>>/apbs_3.4.1-5.1ubuntu2_arm64.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: apbs
Binary: apbs libapbs-dev libapbs3t64 libfetk-dev libfetk1.9t64 python3-apbslib
Architecture: arm64
Version: 3.4.1-5.1ubuntu2
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Build-Date: Sun, 12 May 2024 13:13:19 +0000
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Environment:
 DEB_BUILD_OPTIONS="noautodbgsym parallel=4"
 DEB_BUILD_PROFILES="noudeb"
 LANG="C.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1711906773"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


apbs_3.4.1-5.1ubuntu2_arm64.deb
-------------------------------

 new Debian package, version 2.0.
 size 75388 bytes: control archive=1740 bytes.
    1851 bytes,    30 lines      control
    1479 bytes,    23 lines      md5sums
 Package: apbs
 Version: 3.4.1-5.1ubuntu2
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 1254
 Depends: apbs-data (= 3.4.1-5.1ubuntu2), libapbs3t64 (= 3.4.1-5.1ubuntu2), libjs-mathjax, libamd3 (>= 1:7.0.1), libarpack2t64 (>= 2.1), libblas3 | libblas.so.3, libc6 (>= 2.34), libcamd3 (>= 1:7.0.1), libccolamd3 (>= 1:7.0.1), libcholmod5 (>= 1:7.3.1), libcolamd3 (>= 1:7.0.1), libfetk1.9t64 (>= 3.4.1), libgomp1 (>= 4.2.1), libmaloc1 (>= 0.2-1), libopenmpi3t64 (>= 4.1.6), libspqr4 (>= 1:7.6.1+dfsg), libstdc++6 (>= 4.1.1), libsuitesparseconfig7 (>= 1:7.0.1), libsuperlu6 (>= 6.0.1+dfsg1), libumfpack6 (>= 1:7.0.1)
 Section: science
 Priority: optional
 Homepage: http://www.poissonboltzmann.org/
 Description: Adaptive Poisson Boltzmann Solver
  APBS is a software package for the numerical solution of the
  Poisson-Boltzmann equation (PBE), one of the most popular continuum
  models for describing electrostatic interactions between molecular
  solutes in salty, aqueous media.  Continuum electrostatics plays an
  important role in several areas of biomolecular simulation, including:
  .
    * simulation of diffusional processes to determine ligand-protein and
      protein-protein binding kinetics,
    * implicit solvent molecular dynamics of biomolecules ,
    * solvation and binding energy calculations to determine
      ligand-protein and protein-protein equilibrium binding constants
      and aid in rational drug design,
    * and biomolecular titration studies.
  .
  APBS was designed to efficiently evaluate electrostatic properties for
  such simulations for a wide range of length scales to enable the
  investigation of molecules with tens to millions of atoms.
  .
  This package contains the apbs program and utilities.
 Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-03-31 17:39 ./
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/bin/
-rwxr-xr-x root/root     67664 2024-03-31 17:39 ./usr/bin/apbs
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/apbs/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/apbs/tools/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/apbs/tools/bin/
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-rwxr-xr-x root/root     67664 2024-03-31 17:39 ./usr/lib/apbs/tools/bin/smooth
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-rwxr-xr-x root/root     67664 2024-03-31 17:39 ./usr/lib/apbs/tools/bin/value
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/apbs/
-rw-r--r-- root/root        78 2022-04-29 18:53 ./usr/share/doc/apbs/README
-rw-r--r-- root/root       294 2024-03-29 13:58 ./usr/share/doc/apbs/README.test
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/share/doc/apbs/changelog.Debian.gz -> ../libapbs3t64/changelog.Debian.gz
-rw-r--r-- root/root      6898 2024-03-29 13:58 ./usr/share/doc/apbs/copyright
-rw-r--r-- root/root     17248 2022-04-29 18:53 ./usr/share/doc/apbs/releases.rst.gz
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/man/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/man/man1/
-rw-r--r-- root/root       835 2024-03-31 17:39 ./usr/share/man/man1/apbs.1.gz


libapbs-dev_3.4.1-5.1ubuntu2_arm64.deb
--------------------------------------

 new Debian package, version 2.0.
 size 99422 bytes: control archive=2157 bytes.
     761 bytes,    20 lines      control
    3873 bytes,    58 lines      md5sums
 Package: libapbs-dev
 Source: apbs
 Version: 3.4.1-5.1ubuntu2
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 713
 Depends: libapbs3t64 (= 3.4.1-5.1ubuntu2)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.poissonboltzmann.org/
 Description: Adaptive Poisson Boltzmann Solver
  APBS is a software package for the numerical solution of the
  Poisson-Boltzmann equation (PBE), one of the most popular continuum
  models for describing electrostatic interactions between molecular
  solutes in salty, aqueous media.
  .
  This package contains the development headers to build against
  libapbs_* shared libraries.
 Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-03-31 17:39 ./
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/apbs/
-rw-r--r-- root/root      3281 2022-04-29 18:53 ./usr/include/apbs/apbs.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/apbs/fem/
-rw-r--r-- root/root     11331 2022-04-29 18:53 ./usr/include/apbs/fem/vcsm.h
-rw-r--r-- root/root     37852 2022-04-29 18:53 ./usr/include/apbs/fem/vfetk.h
-rw-r--r-- root/root     10184 2022-04-29 18:53 ./usr/include/apbs/fem/vpee.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/apbs/generic/
-rw-r--r-- root/root      8229 2022-04-29 18:53 ./usr/include/apbs/generic/apolparm.h
-rw-r--r-- root/root      6395 2022-04-29 18:53 ./usr/include/apbs/generic/bemparm.h
-rw-r--r-- root/root      8873 2022-04-29 18:53 ./usr/include/apbs/generic/femparm.h
-rw-r--r-- root/root      6121 2022-04-29 18:53 ./usr/include/apbs/generic/geoflowparm.h
-rw-r--r-- root/root     12602 2022-04-29 18:53 ./usr/include/apbs/generic/mgparm.h
-rw-r--r-- root/root     21080 2022-04-29 18:53 ./usr/include/apbs/generic/nosh.h
-rw-r--r-- root/root     10919 2022-04-29 18:53 ./usr/include/apbs/generic/pbamparm.h
-rw-r--r-- root/root     11096 2022-04-29 18:53 ./usr/include/apbs/generic/pbeparm.h
-rw-r--r-- root/root      7321 2022-04-29 18:53 ./usr/include/apbs/generic/pbsamparm.h
-rw-r--r-- root/root     23163 2022-04-29 18:53 ./usr/include/apbs/generic/vacc.h
-rw-r--r-- root/root      8494 2022-04-29 18:53 ./usr/include/apbs/generic/valist.h
-rw-r--r-- root/root     10351 2022-04-29 18:53 ./usr/include/apbs/generic/vatom.h
-rw-r--r-- root/root      5946 2022-04-29 18:53 ./usr/include/apbs/generic/vcap.h
-rw-r--r-- root/root      9280 2022-04-29 18:53 ./usr/include/apbs/generic/vclist.h
-rw-r--r-- root/root     12789 2022-04-29 18:53 ./usr/include/apbs/generic/vgreen.h
-rw-r--r-- root/root     38131 2022-04-29 18:53 ./usr/include/apbs/generic/vhal.h
-rw-r--r-- root/root      3084 2022-04-29 18:53 ./usr/include/apbs/generic/vmatrix.h
-rw-r--r-- root/root     12145 2022-04-29 18:53 ./usr/include/apbs/generic/vparam.h
-rw-r--r-- root/root     19880 2022-04-29 18:53 ./usr/include/apbs/generic/vpbe.h
-rw-r--r-- root/root      5171 2022-04-29 18:53 ./usr/include/apbs/generic/vstring.h
-rw-r--r-- root/root      3958 2022-04-29 18:53 ./usr/include/apbs/generic/vunit.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/apbs/mg/
-rw-r--r-- root/root     14945 2022-04-29 18:53 ./usr/include/apbs/mg/vgrid.h
-rw-r--r-- root/root      6887 2022-04-29 18:53 ./usr/include/apbs/mg/vmgrid.h
-rw-r--r-- root/root      6160 2022-04-29 18:53 ./usr/include/apbs/mg/vopot.h
-rw-r--r-- root/root     52888 2022-04-29 18:53 ./usr/include/apbs/mg/vpmg.h
-rw-r--r-- root/root     11010 2022-04-29 18:53 ./usr/include/apbs/mg/vpmgp.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/apbs/pmgc/
-rw-r--r-- root/root     12319 2022-04-29 18:53 ./usr/include/apbs/pmgc/buildAd.h
-rw-r--r-- root/root      5305 2022-04-29 18:53 ./usr/include/apbs/pmgc/buildBd.h
-rw-r--r-- root/root     16972 2022-04-29 18:53 ./usr/include/apbs/pmgc/buildGd.h
-rw-r--r-- root/root     10038 2022-04-29 18:53 ./usr/include/apbs/pmgc/buildPd.h
-rw-r--r-- root/root      3475 2022-04-29 18:53 ./usr/include/apbs/pmgc/cgd.h
-rw-r--r-- root/root      5776 2022-04-29 18:53 ./usr/include/apbs/pmgc/gsd.h
-rw-r--r-- root/root     19097 2022-04-29 18:53 ./usr/include/apbs/pmgc/matvecd.h
-rw-r--r-- root/root      5762 2022-04-29 18:53 ./usr/include/apbs/pmgc/mgcsd.h
-rw-r--r-- root/root      9284 2022-04-29 18:53 ./usr/include/apbs/pmgc/mgdrvd.h
-rw-r--r-- root/root      7729 2022-04-29 18:53 ./usr/include/apbs/pmgc/mgfasd.h
-rw-r--r-- root/root     14987 2022-04-29 18:53 ./usr/include/apbs/pmgc/mgsubd.h
-rw-r--r-- root/root     12104 2022-04-29 18:53 ./usr/include/apbs/pmgc/mikpckd.h
-rw-r--r-- root/root      4008 2022-04-29 18:53 ./usr/include/apbs/pmgc/mlinpckd.h
-rw-r--r-- root/root      7781 2022-04-29 18:53 ./usr/include/apbs/pmgc/mypdec.h
-rw-r--r-- root/root      5950 2022-04-29 18:53 ./usr/include/apbs/pmgc/newdrvd.h
-rw-r--r-- root/root      6700 2022-04-29 18:53 ./usr/include/apbs/pmgc/newtond.h
-rw-r--r-- root/root      8220 2022-04-29 18:53 ./usr/include/apbs/pmgc/powerd.h
-rw-r--r-- root/root      4685 2022-04-29 18:53 ./usr/include/apbs/pmgc/smoothd.h
-rw-r--r-- root/root     33482 2022-04-29 18:53 ./usr/include/apbs/routines.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_fem.so -> libapbs_fem.so.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_generic.so -> libapbs_generic.so.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_mg.so -> libapbs_mg.so.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_pmgc.so -> libapbs_pmgc.so.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_routines.so -> libapbs_routines.so.3
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/apbs/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/apbs/cmake/
-rw-r--r-- root/root       949 2024-03-29 13:58 ./usr/share/apbs/cmake/FindAMD.cmake
-rw-r--r-- root/root      2501 2024-03-29 13:58 ./usr/share/apbs/cmake/FindARPACK.cmake
-rw-r--r-- root/root     22563 2024-03-29 13:58 ./usr/share/apbs/cmake/FindLAPACK.cmake
-rw-r--r-- root/root     23393 2024-03-29 13:58 ./usr/share/apbs/cmake/FindSuiteSparse.cmake
-rw-r--r-- root/root      2578 2024-03-29 13:58 ./usr/share/apbs/cmake/FindSuperLU.cmake
-rw-r--r-- root/root      1153 2024-03-29 13:58 ./usr/share/apbs/cmake/FindUMFPACK.cmake
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/libapbs-dev/
-rw-r--r-- root/root        78 2022-04-29 18:53 ./usr/share/doc/libapbs-dev/README
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/share/doc/libapbs-dev/changelog.Debian.gz -> ../libapbs3t64/changelog.Debian.gz
-rw-r--r-- root/root      6898 2024-03-29 13:58 ./usr/share/doc/libapbs-dev/copyright
-rw-r--r-- root/root     17248 2022-04-29 18:53 ./usr/share/doc/libapbs-dev/releases.rst.gz


libapbs3t64_3.4.1-5.1ubuntu2_arm64.deb
--------------------------------------

 new Debian package, version 2.0.
 size 265502 bytes: control archive=1032 bytes.
     867 bytes,    22 lines      control
     538 bytes,     7 lines      md5sums
     194 bytes,     5 lines      shlibs
      75 bytes,     2 lines      triggers
 Package: libapbs3t64
 Source: apbs
 Version: 3.4.1-5.1ubuntu2
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 868
 Depends: libc6 (>= 2.29), libfetk1.9t64 (>= 3.4.1), libgomp1 (>= 4.9), libmaloc1 (>= 0.2-1)
 Breaks: libapbs3 (<< 3.4.1-5.1ubuntu2)
 Replaces: libapbs3
 Provides: libapbs3 (= 3.4.1-5.1ubuntu2)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.poissonboltzmann.org/
 Description: Adaptive Poisson Boltzmann Solver
  APBS is a software package for the numerical solution of the
  Poisson-Boltzmann equation (PBE), one of the most popular continuum
  models for describing electrostatic interactions between molecular
  solutes in salty, aqueous media.
  .
  This package contains the libapbs_* shared libraries.
 Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-03-31 17:39 ./
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/
-rw-r--r-- root/root     69520 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_fem.so.3
-rw-r--r-- root/root    264120 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_generic.so.3
-rw-r--r-- root/root    198584 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_mg.so.3
-rw-r--r-- root/root    198584 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_pmgc.so.3
-rw-r--r-- root/root    133048 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libapbs_routines.so.3
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/libapbs3t64/
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/share/doc/libapbs3t64/changelog.Debian.gz -> ../libfetk1.9t64/changelog.Debian.gz
-rw-r--r-- root/root      6898 2024-03-29 13:58 ./usr/share/doc/libapbs3t64/copyright
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/lintian/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       164 2024-03-29 13:58 ./usr/share/lintian/overrides/libapbs3t64


libfetk-dev_3.4.1-5.1ubuntu2_arm64.deb
--------------------------------------

 new Debian package, version 2.0.
 size 144498 bytes: control archive=1993 bytes.
    1353 bytes,    32 lines      control
    2509 bytes,    40 lines      md5sums
 Package: libfetk-dev
 Source: apbs
 Version: 3.4.1-5.1ubuntu2
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 1505
 Depends: libfetk1.9t64 (= 3.4.1-5.1ubuntu2), libmaloc-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.poissonboltzmann.org/
 Description: FETK libraries for APBS (development headers)
  The Finite Element ToolKit (FETK) is a collection of adaptive finite
  element method (AFEM) software libraries and tools for solving
  coupled systems of nonlinear geometric partial differential equations
  (PDE). The FETK libraries and tools are written in an object-oriented
  form of ANSI-C and in C++, and include a collection of standard
  numerical libraries (PUNC), a stand-alone high-quality surface and
  volume simplex mesh generator (GAMer), a stand-alone networked
  polygon display tool (SG), a general nonlinear finite element
  modeling kernel (MC)
  .
  This package provides a fork of FETK intended for use by APBS
  (Adaptive Poisson Boltzmann Solver).
  .
  The FETK component MALOC (Minimal Abstraction Layer for
  Object-oriented C/C++ programs) is provided separately by
  libmaloc-dev.
  .
  This package contains the development headers to build against
  libapbs_* shared libraries.
 Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-03-31 17:39 ./
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/fetk/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/fetk/gamer/
-rw-r--r-- root/root     11439 2024-03-29 13:58 ./usr/include/fetk/gamer/biom.h
-rw-r--r-- root/root      1459 2024-03-29 13:58 ./usr/include/fetk/gamer/gamer.h
-rw-r--r-- root/root      2282 2024-03-29 13:58 ./usr/include/fetk/gamer/gamer_base.h
-rw-r--r-- root/root    106910 2024-03-29 13:58 ./usr/include/fetk/gamer/tetgen.h
-rw-r--r-- root/root     22024 2024-03-29 13:58 ./usr/include/fetk/gamer/triangle.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/fetk/mc/
-rw-r--r-- root/root     27753 2024-03-29 13:58 ./usr/include/fetk/mc/am.h
-rw-r--r-- root/root     49795 2024-03-29 13:58 ./usr/include/fetk/mc/aprx.h
-rw-r--r-- root/root      1297 2024-03-29 13:58 ./usr/include/fetk/mc/bam.h
-rw-r--r-- root/root     29085 2024-03-29 13:58 ./usr/include/fetk/mc/bmat.h
-rw-r--r-- root/root      5029 2024-03-29 13:58 ./usr/include/fetk/mc/bnode.h
-rw-r--r-- root/root     32284 2024-03-29 13:58 ./usr/include/fetk/mc/bvec.h
-rw-r--r-- root/root     13191 2024-03-29 13:58 ./usr/include/fetk/mc/dyn.h
-rw-r--r-- root/root    130602 2024-03-29 13:58 ./usr/include/fetk/mc/gem.h
-rw-r--r-- root/root     47965 2024-03-29 13:58 ./usr/include/fetk/mc/mat.h
-rw-r--r-- root/root      1457 2024-03-29 13:58 ./usr/include/fetk/mc/mc.h
-rw-r--r-- root/root      5705 2024-03-29 13:58 ./usr/include/fetk/mc/mc_base.h
-rw-r--r-- root/root      4665 2024-03-29 13:58 ./usr/include/fetk/mc/mcsh.h
-rw-r--r-- root/root     14987 2024-03-29 13:58 ./usr/include/fetk/mc/mtool.h
-rw-r--r-- root/root      1189 2024-03-29 13:58 ./usr/include/fetk/mc/nam.h
-rw-r--r-- root/root      4772 2024-03-29 13:58 ./usr/include/fetk/mc/node.h
-rw-r--r-- root/root     17885 2024-03-29 13:58 ./usr/include/fetk/mc/pde.h
-rw-r--r-- root/root     17026 2024-03-29 13:58 ./usr/include/fetk/mc/re.h
-rw-r--r-- root/root      4823 2024-03-29 13:58 ./usr/include/fetk/mc/slu.h
-rw-r--r-- root/root     12682 2024-03-29 13:58 ./usr/include/fetk/mc/vec.h
-rw-r--r-- root/root     14016 2024-03-29 13:58 ./usr/include/fetk/mc/vec3.h
-rw-r--r-- root/root     26120 2024-03-29 13:58 ./usr/include/fetk/mc/vel.h
-rw-r--r-- root/root     68269 2024-03-29 13:58 ./usr/include/fetk/mc/ves.h
-rw-r--r-- root/root     50938 2024-03-29 13:58 ./usr/include/fetk/mc/whb.h
-rw-r--r-- root/root      7767 2024-03-29 13:58 ./usr/include/fetk/mc/zslu.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/include/fetk/punc/
-rw-r--r-- root/root      1569 2024-03-29 13:58 ./usr/include/fetk/punc/punc.h
-rw-r--r-- root/root      1272 2024-03-29 13:58 ./usr/include/fetk/punc/punc_base.h
-rw-r--r-- root/root      1455 2024-03-29 13:58 ./usr/include/fetk/punc/punc_base_p.h
-rw-r--r-- root/root      3987 2024-03-31 17:39 ./usr/include/fetk/punc/punccf.h
-rw-r--r-- root/root     46865 2024-03-29 13:58 ./usr/include/fetk/punc/varpack.h
-rw-r--r-- root/root     39886 2024-03-29 13:58 ./usr/include/fetk/punc/vblas.h
-rw-r--r-- root/root     17098 2024-03-29 13:58 ./usr/include/fetk/punc/vcgcode.h
-rw-r--r-- root/root     13077 2024-03-29 13:58 ./usr/include/fetk/punc/vf2c.h
-rw-r--r-- root/root    552778 2024-03-29 13:58 ./usr/include/fetk/punc/vlapack.h
-rw-r--r-- root/root     82089 2024-03-29 13:58 ./usr/include/fetk/punc/vpmg.h
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libcgcode.so -> libcgcode.so.1.9
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libgamer.so -> libgamer.so.1.9
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libmc.so -> libmc.so.1.9
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libpunc.so -> libpunc.so.1.9
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libvf2c.so -> libvf2c.so.1.9
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/libfetk-dev/
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/share/doc/libfetk-dev/changelog.Debian.gz -> ../libfetk1.9t64/changelog.Debian.gz
-rw-r--r-- root/root      6898 2024-03-29 13:58 ./usr/share/doc/libfetk-dev/copyright


libfetk1.9t64_3.4.1-5.1ubuntu2_arm64.deb
----------------------------------------

 new Debian package, version 2.0.
 size 578612 bytes: control archive=1428 bytes.
    1542 bytes,    35 lines      control
     616 bytes,     8 lines      md5sums
     186 bytes,     5 lines      shlibs
      75 bytes,     2 lines      triggers
 Package: libfetk1.9t64
 Source: apbs
 Version: 3.4.1-5.1ubuntu2
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 1555
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libmaloc1 (>= 0.2-1), libstdc++6 (>= 5), libsuperlu6 (>= 6.0.1+dfsg1), libumfpack6 (>= 1:7.0.1)
 Breaks: libfetk1.9 (<< 3.4.1-5.1ubuntu2)
 Replaces: libfetk1.9
 Provides: libfetk1.9 (= 3.4.1-5.1ubuntu2)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.poissonboltzmann.org/
 Description: FETK libraries for APBS (shared libraries)
  The Finite Element ToolKit (FETK) is a collection of adaptive finite
  element method (AFEM) software libraries and tools for solving
  coupled systems of nonlinear geometric partial differential equations
  (PDE). The FETK libraries and tools are written in an object-oriented
  form of ANSI-C and in C++, and include a collection of standard
  numerical libraries (PUNC), a stand-alone high-quality surface and
  volume simplex mesh generator (GAMer), a stand-alone networked
  polygon display tool (SG), a general nonlinear finite element
  modeling kernel (MC)
  .
  This package provides a fork of FETK intended for use by APBS
  (Adaptive Poisson Boltzmann Solver).
  .
  The FETK component MALOC (Minimal Abstraction Layer for
  Object-oriented C/C++ programs) is provided separately via
  libmaloc-dev.
  .
  This package contains the libgamer, libmc, libpunc (and libcgcode,
  libvf2c) shared libraries.
 Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-03-31 17:39 ./
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libcgcode.so.1.9 -> libcgcode.so.1.9.3
-rw-r--r-- root/root    150152 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libcgcode.so.1.9.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libgamer.so.1.9 -> libgamer.so.1.9.3
-rw-r--r-- root/root    675336 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libgamer.so.1.9.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libmc.so.1.9 -> libmc.so.1.9.3
-rw-r--r-- root/root    534328 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libmc.so.1.9.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libpunc.so.1.9 -> libpunc.so.1.9.3
-rw-r--r-- root/root     67288 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libpunc.so.1.9.3
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libvf2c.so.1.9 -> libvf2c.so.1.9.3
-rw-r--r-- root/root    133672 2024-03-31 17:39 ./usr/lib/aarch64-linux-gnu/libvf2c.so.1.9.3
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/libfetk1.9t64/
-rw-r--r-- root/root      3653 2024-03-31 17:39 ./usr/share/doc/libfetk1.9t64/changelog.Debian.gz
-rw-r--r-- root/root      6898 2024-03-29 13:58 ./usr/share/doc/libfetk1.9t64/copyright
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/lintian/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       140 2024-03-29 13:58 ./usr/share/lintian/overrides/libfetk1.9t64


python3-apbslib_3.4.1-5.1ubuntu2_arm64.deb
------------------------------------------

 new Debian package, version 2.0.
 size 200412 bytes: control archive=2047 bytes.
     932 bytes,    19 lines      control
    2862 bytes,    36 lines      md5sums
     277 bytes,    12 lines   *  postinst             #!/bin/sh
     390 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-apbslib
 Source: apbs
 Version: 3.4.1-5.1ubuntu2
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 1054
 Depends: libapbs3t64 (= 3.4.1-5.1ubuntu2), python3 (<< 3.13), python3 (>= 3.12~), python3:any, libc6 (>= 2.32), libgcc-s1 (>= 3.3.1), libmaloc1 (>= 0.2-1), libpython3.12t64 (>= 3.12.1), libstdc++6 (>= 11)
 Section: python
 Priority: optional
 Homepage: http://www.poissonboltzmann.org/
 Description: Adaptive Poisson Boltzmann Solver
  APBS is a software package for the numerical solution of the
  Poisson-Boltzmann equation (PBE), one of the most popular continuum
  models for describing electrostatic interactions between molecular
  solutes in salty, aqueous media.
  .
  This package provides both the apbs and apbslib modules for Python3
  enabling Python applications to access apbs.
 Original-Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-03-31 17:39 ./
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/python3/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root    329856 2024-03-31 17:39 ./usr/lib/python3/dist-packages/apbs.cpython-312-aarch64-linux-gnu.so
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/lib/python3/dist-packages/apbslib/
-rw-r--r-- root/root        23 2024-03-29 13:58 ./usr/lib/python3/dist-packages/apbslib/__init__.py
-rw-r--r-- root/root    142208 2024-03-31 17:39 ./usr/lib/python3/dist-packages/apbslib/_apbslib.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root     14524 2024-03-31 17:39 ./usr/lib/python3/dist-packages/apbslib/apbslib.py
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/apbs/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/apbs/tools/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/apbs/tools/python-pybind/
-rw-r--r-- root/root       551 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/CMakeLists.txt
-rw-r--r-- root/root       812 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/bind_constants.hpp
-rw-r--r-- root/root      4224 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/bind_nosh.cpp
-rw-r--r-- root/root      1906 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/bind_nosh.hpp
-rw-r--r-- root/root      3131 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/bind_valist.cpp
-rw-r--r-- root/root      1018 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/bind_valist.hpp
-rw-r--r-- root/root      1601 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/bind_vatom.cpp
-rw-r--r-- root/root       702 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/bind_vatom.hpp
-rw-r--r-- root/root       988 2022-04-29 18:53 ./usr/share/apbs/tools/python-pybind/module.cpp
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/apbs/tools/python/
-rw-r--r-- root/root      1896 2024-03-31 17:39 ./usr/share/apbs/tools/python/CMakeLists.txt
-rw-r--r-- root/root     20999 2022-04-29 18:53 ./usr/share/apbs/tools/python/Makefile
-rw-r--r-- root/root       898 2022-04-29 18:53 ./usr/share/apbs/tools/python/Makefile.am
-rw-r--r-- root/root     20457 2022-04-29 18:53 ./usr/share/apbs/tools/python/Makefile.in
-rw-r--r-- root/root      1834 2022-04-29 18:53 ./usr/share/apbs/tools/python/README
-rw-r--r-- root/root      6111 2022-04-29 18:53 ./usr/share/apbs/tools/python/apbs.in
-rw-r--r-- root/root    260435 2022-04-29 18:53 ./usr/share/apbs/tools/python/apbslib.c
-rw-r--r-- root/root     14676 2022-04-29 18:53 ./usr/share/apbs/tools/python/apbslib.i
-rw-r--r-- root/root     11686 2022-04-29 18:53 ./usr/share/apbs/tools/python/apbslib_wrap.doc
-rw-r--r-- root/root        66 2022-04-29 18:53 ./usr/share/apbs/tools/python/ion.pqr
-rw-r--r-- root/root     15725 2022-04-29 18:53 ./usr/share/apbs/tools/python/main.py
-rw-r--r-- root/root     19499 2024-03-31 17:39 ./usr/share/apbs/tools/python/noinput.py
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/apbs/tools/python/vgrid/
-rw-r--r-- root/root     15551 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/Makefile
-rw-r--r-- root/root       845 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/Makefile.am
-rw-r--r-- root/root     15036 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/Makefile.in
-rw-r--r-- root/root      1638 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/README
-rw-r--r-- root/root      3134 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/average.py
-rw-r--r-- root/root     14146 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/mergedx.py
-rw-r--r-- root/root      2514 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/read.py
-rw-r--r-- root/root      3038 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/vgrid.i
-rw-r--r-- root/root      4711 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/vgrid.py
-rw-r--r-- root/root     97354 2022-04-29 18:53 ./usr/share/apbs/tools/python/vgrid/vgridlib.c
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-31 17:39 ./usr/share/doc/python3-apbslib/
lrwxrwxrwx root/root         0 2024-03-31 17:39 ./usr/share/doc/python3-apbslib/changelog.Debian.gz -> ../libapbs3t64/changelog.Debian.gz
-rw-r--r-- root/root      6898 2024-03-29 13:58 ./usr/share/doc/python3-apbslib/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: any
Build-Space: 349420
Build-Time: 980
Distribution: noble
Host Architecture: arm64
Install-Time: 43
Job: apbs_3.4.1-5.1ubuntu2.dsc
Machine Architecture: arm64
Package: apbs
Package-Time: 1028
Source-Version: 3.4.1-5.1ubuntu2
Space: 349420
Status: successful
Version: 3.4.1-5.1ubuntu2
--------------------------------------------------------------------------------
Finished at 2024-05-12T13:13:19Z
Build needed 00:17:08, 349420k disk space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28158968
Scanning for processes to kill in build PACKAGEBUILD-28158968